Reports made with https://github.com/jmonlong/pangenome-evaluation.
Depending on the modules ran, this report contains summary stats, such as graph complexity, variants, mapping, resources.
Images of selected regions using vg view and odgi viz. Regions selected across different profiles: SV, repeats, segdup, VNTR.
App to explore the same selected regions as above in an interactive “network” view. Experimental
Mapping is performed with vg (giraffe) for 50x short-reads data, and GraphAligner for 10x PacBio CCS data. Both sequenceing data come from HG002.