Visualizing regions in pangenomes
vg view
Images made using vg view | dot.
Only the reference path is shown for now.
chr11-1154049-1155049
chr11-1154049-1155049 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-101358684-101359684
chr7-101358684-101359684 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-150910169-150911169
chr7-150910169-150911169 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-475394-476016
chr7-475394-476016 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-61384029-61384762
chr13-61384029-61384762 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-131579290-131580978
chr12-131579290-131580978 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
Skipping large file: GRCh38-freeze1.cactus.feb10.chr12-131579290-131580978_c50.dot.svg (2.23 Mbytes)
GRCh38-freeze1.minigraph.feb3-paths
chr12-70128302-70129302
chr12-70128302-70129302 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr4-162695441-162696441
chr4-162695441-162696441 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr14-33544325-33545325
chr14-33544325-33545325 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-67323002-67323468
chr13-67323002-67323468 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-193582545-193582997
chr3-193582545-193582997 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr16-80356516-80356991
chr16-80356516-80356991 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-103600351-103601351
chr12-103600351-103601351 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-29676448-29677448
chr22-29676448-29677448 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-22585135-22586135
chr8-22585135-22586135 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-114996818-114997268
chr8-114996818-114997268 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-154936157-154936642
chr5-154936157-154936642 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-12037177-12037657
chr5-12037177-12037657 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-86259293-86260402
chr12-86259293-86260402 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr11-47637780-47638780
chr11-47637780-47638780 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-43927237-43928237
chr6-43927237-43928237 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-103694653-103695378
chr5-103694653-103695378 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-61997599-61998325
chr5-61997599-61998325 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-152708636-152712854
chr6-152708636-152712854 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-137152130-137153137
chr3-137152130-137153137 small SD (0.992 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr15-36103430-36104437
chr15-36103430-36104437 small SD (0.992 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-39875503-39876516
chr22-39875503-39876516 small SD (0.991 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr1-143242246-143242763
chr1-143242246-143242763 small SD (0.925 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr4-49120896-49121517
chr4-49120896-49121517 small SD (0.928 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr1-143241981-143242609
chr1-143241981-143242609 small SD (0.914 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-13309152-13310243
chr5-13309152-13310243 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-51798285-51799425
chr8-51798285-51799425 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-17173297-17174490
chr22-17173297-17174490 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-167939660-167942325
chr6-167939660-167942325 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-114246457-114248566
chr3-114246457-114248566 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-31601781-31604149
chr13-31601781-31604149 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
odgi viz
Images made using odgi viz.
chr11-1154049-1155049
chr11-1154049-1155049 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-101358684-101359684
chr7-101358684-101359684 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-150910169-150911169
chr7-150910169-150911169 GIAB >200bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr7-475394-476016
chr7-475394-476016 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-61384029-61384762
chr13-61384029-61384762 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-131579290-131580978
chr12-131579290-131580978 GIAB >200bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-70128302-70129302
chr12-70128302-70129302 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr4-162695441-162696441
chr4-162695441-162696441 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr14-33544325-33545325
chr14-33544325-33545325 GIAB <100bp INS in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-67323002-67323468
chr13-67323002-67323468 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-193582545-193582997
chr3-193582545-193582997 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr16-80356516-80356991
chr16-80356516-80356991 GIAB <100bp DEL in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-103600351-103601351
chr12-103600351-103601351 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-29676448-29677448
chr22-29676448-29677448 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-22585135-22586135
chr8-22585135-22586135 GIAB <100bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-114996818-114997268
chr8-114996818-114997268 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-154936157-154936642
chr5-154936157-154936642 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-12037177-12037657
chr5-12037177-12037657 GIAB <100bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr12-86259293-86260402
chr12-86259293-86260402 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr11-47637780-47638780
chr11-47637780-47638780 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-43927237-43928237
chr6-43927237-43928237 GIAB >200bp INS not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-103694653-103695378
chr5-103694653-103695378 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-61997599-61998325
chr5-61997599-61998325 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-152708636-152712854
chr6-152708636-152712854 GIAB >200bp DEL not in TR
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-137152130-137153137
chr3-137152130-137153137 small SD (0.992 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr15-36103430-36104437
chr15-36103430-36104437 small SD (0.992 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-39875503-39876516
chr22-39875503-39876516 small SD (0.991 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr1-143242246-143242763
chr1-143242246-143242763 small SD (0.925 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr4-49120896-49121517
chr4-49120896-49121517 small SD (0.928 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr1-143241981-143242609
chr1-143241981-143242609 small SD (0.914 sim)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr5-13309152-13310243
chr5-13309152-13310243 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr8-51798285-51799425
chr8-51798285-51799425 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr22-17173297-17174490
chr22-17173297-17174490 VNTR <200bp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr6-167939660-167942325
chr6-167939660-167942325 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr3-114246457-114248566
chr3-114246457-114248566 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
chr13-31601781-31604149
chr13-31601781-31604149 VNTR >1kbp (Chaisson Lab)
GRCh38-freeze1.cactus.feb10
GRCh38-freeze1.minigraph.feb3-paths
