Index of /~sol/labgroups/sanfordlab/rnaseq/stanford/Sanford_2017jun30/SUMMARY_old_assemblies

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]SUMMARY_allsamples_QVboxplot_chimp.pdf2017-07-31 15:25 6.8M 
[ ]SUMMARY_allsamples_QVboxplot_chimp_first25.pdf2017-07-31 15:25 5.1M 
[ ]SUMMARY_allsamples_QVboxplot_human.pdf2017-07-31 15:25 6.6M 
[ ]SUMMARY_allsamples_QVboxplot_human_first25.pdf2017-07-31 15:25 5.0M 
[ ]SUMMARY_allsamples_QVboxplot_orang.pdf2017-07-31 15:25 6.9M 
[ ]SUMMARY_allsamples_QVboxplot_orang_first25.pdf2017-07-31 15:25 5.1M 
[TXT]SUMMARY_allsamples_fastq_barcode_1to8_acgtn_bypos_stats_rd1.txt2017-08-01 07:03 24K 
[TXT]SUMMARY_allsamples_fastq_barcode_1to8_acgtn_bypos_stats_rd2.txt2017-08-01 07:03 24K 
[TXT]SUMMARY_allsamples_fastq_barcode_molecular_index_top_bottom_strings.txt2017-08-01 18:01 109K 
[ ]SUMMARY_mapalgoG1_pe50x50_nofilt_genome.bowtie.sortByFrac.stats2017-08-01 08:45 6.4K 
[ ]SUMMARY_mapalgoG1_pe50x50_nofilt_genome.bowtie.sortById.stats2017-08-01 08:44 6.4K 
[ ]SUMMARY_mapalgoG1_pe50x50_nofilt_genome_00of50_filtered.bowtie.pelength2017-08-01 08:28 51K 
[ ]SUMMARY_mapalgoRF1_pe125x125_filtonly.bowtie.filter.hits.exo.sortByFrac.table2017-08-02 09:11 3.2K 
[ ]SUMMARY_mapalgoRF1_pe125x125_filtonly.bowtie.filter.hits.exo.sortById.table2017-08-02 09:11 3.2K 
[ ]SUMMARY_mapalgoRF1_pe125x125_filtonly.bowtie.filter.sortByFrac.stats2017-08-02 09:04 5.3K 
[ ]SUMMARY_mapalgoRF1_pe125x125_filtonly.bowtie.filter.sortById.stats2017-08-02 09:04 5.3K 
[ ]SUMMARY_mapalgoRF1_pe125x125_filtonly.bowtie.filter.top.hits2017-08-02 09:06 85K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.rdb1.xpe.star.cov.allF2.region.sortByFrac.stats.txt2017-08-04 08:01 12K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.rdb1.xpe.star.cov.allF2.region.sortById.stats.txt2017-08-04 08:01 12K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.rdb1.xpe.yc.star.map.sortByFrac.stats2017-08-03 17:20 8.2K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.rdb1.xpe.yc.star.map.sortById.stats2017-08-03 17:20 8.2K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.xpe.yc.star.map.sortByFrac.stats2017-08-03 07:46 8.2K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ih1.xpe.yc.star.map.sortById.stats2017-08-03 07:47 8.2K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.ratio.ih1_vs_ih1.rdb1.MappedCnt.star.map.stats2017-08-03 17:21 4.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star.star.stats2017-08-02 13:06 8.2K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_hg19.ih1.rdb1.xpe.star.STRANDPM.cov.trk.bw.txt2019-12-20 15:19 16K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_hg19.ih1.rdb1.xpe.yc.star.map.trk.bam.txt2019-12-20 15:19 6.6K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_panTro4.ih1.rdb1.xpe.star.STRANDPM.cov.trk.bw.txt2019-12-20 15:19 16K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_panTro4.ih1.rdb1.xpe.yc.star.map.trk.bam.txt2019-12-20 15:19 6.7K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_ponAbe2.ih1.rdb1.xpe.star.STRANDPM.cov.trk.bw.txt2019-12-20 15:19 16K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_allsamples_ponAbe2.ih1.rdb1.xpe.yc.star.map.trk.bam.txt2019-12-20 15:19 6.7K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW2_rdb1.awpsi.merged.events.hg19.txt2017-12-11 19:08 2.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1.awpsi.merged.events.hg19.txt2017-12-19 08:43 2.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1.awpsi.merged.events.panTro4.txt2017-12-19 08:43 2.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1.awpsi.merged.events.ponAbe2.txt2017-12-19 16:43 2.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_allsamples_hg19.awpsi.merged.events.psi_vs_span_psi.pdf2017-12-21 14:06 3.0M 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_allsamples_panTro4.awpsi.merged.events.psi_vs_span_psi.pdf2017-12-21 14:06 2.4M 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_allsamples_ponAbe2.awpsi.merged.events.psi_vs_span_psi.pdf2017-12-21 14:06 1.8M 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_cips_poll_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_cips_poll_polm_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_cips_polm_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_cyto_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_cyto_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_hips_poll_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_hips_poll_polm_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_hips_polm_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_mono_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_mono_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_oips_poll_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:31 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_oips_poll_polm_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:31 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_oips_polm_polh_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:31 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_polh_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_polh_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_poll_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_poll_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_polm_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_polm_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_poly_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 3.4K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_poly_hips_cips_minJC_15_maxSP_0.25_pcodeOnly_minAD_0.33_pass.count2018-01-08 16:24 3.4K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_poly_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 3.4K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_untr_hips_cips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-19 09:05 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_awpsialgoTW4_rdb1_untr_hips_oips_minJC_15_maxSP_0.25_minAD_0.33_pass.count2017-12-20 11:37 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_hg19.ih1.rdb1.xpe.star.exonsUnion_SUM.bin100.gene.length.deciles.pdf2017-08-04 10:01 117K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_hg19_allF2.ih1.rdb1.xpe.star.exonsUnion.totCov.top.hits2017-08-04 10:01 53K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1.miso.merged.events.hg19.txt2017-11-01 10:46 2.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_poll_polh_minAD_0.33_minBF_0.0_pass.count2017-11-07 13:00 1.3K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_untr_cyto_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:20 1.3K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_untr_mono_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:20 1.3K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_untr_polh_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.3K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_untr_poll_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.3K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH1_rdb1_se1_hips_untr_polm_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.3K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1.miso.merged.events.hg19.txt2017-11-01 08:51 2.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_poll_polh_minAD_0.33_minBF_0.0_pass.count2017-11-07 13:00 1.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_untr_cyto_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:20 1.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_untr_mono_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:20 1.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_untr_polh_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_untr_poll_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoH2_rdb1_se1_hips_untr_polm_minAD_0.33_minBF_0.0_pass.count2017-11-01 14:21 1.1K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1.miso.merged.events.hg19.txt2017-11-22 10:03 2.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1.miso.merged.events.panTro4.txt2017-11-22 10:04 2.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_cyto_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_mono_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_polh_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_poll_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_polm_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_poly_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 3.1K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW1_rdb1_se1_untr_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-22 19:18 1.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1.miso.merged.events.hg19.txt2017-11-28 08:30 2.5K 
[TXT]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1.miso.merged.events.panTro4.txt2017-11-27 10:31 2.5K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_cips_poll_polh_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_cips_poll_polm_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_cips_polm_polh_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_cyto_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_hips_poll_polh_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_hips_poll_polm_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_hips_polm_polh_minAD_0.33_minBF_0.0_pass.count2017-12-05 16:12 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_mono_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_polh_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_poll_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_polm_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 1.6K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_poly_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:35 3.4K 
[ ]SUMMARY_mapalgoS1_pe125x125_rptfilt_star_misoalgoTW2_rdb1_se1_untr_hips_cips_minAD_0.33_minBF_0.0_pass.count2017-11-28 15:34 1.6K 
[ ]SUMMARY_mapalgoSJPM1_pe125x125_rptfilt_ponAbe2_mm10_star_mm10.star.0to4.stats2017-07-26 17:14 3.9K 
[ ]SUMMARY_mapalgoSJPM1_pe125x125_rptfilt_ponAbe2_mm10_star_ponAbe2.star.0to4.stats2017-07-26 17:14 3.9K 
[ ]SUMMARY_mapalgoSJPM1_pe125x125_rptfilt_ponAbe2_mm10_star_ponAbe2_mm10.star.0to4.stats2017-07-26 15:54 3.9K 
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