aviti0452A
Run Name
29 + 91
Lane 1 (R1 + R2)
29 + 91
Lane 2 (R1 + R2)
1,180,341,762
Polonies
97.6%
Q30
97.8%
Index Assignment
138.532
Assigned Yield (Gb)
10 + 10
Lane 1 (I1 + I2)
10 + 10
Lane 2 (I1 + I2)
0.01%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th Adept_PhiX_CB3 GCACATAGTC GACTACTAGC 3,135,337 0.2656
50th Adept_PhiX_CB4 TGTGTCGACA TGTCTGACAG 4,459,315 0.3778
95th 10xSC0367Pool CGCGCCAAAG AAATCCAAGG 1,138,369,539 96.4441
All Indices
# Sample I1 I2 Polonies % Polonies
1 10xSC0367Pool CGCGCCAAAG AAATCCAAGG 1,138,369,539 96.4441
2 Adept_PhiX_CB1 ATGTCGCTAG CTAGCTCGTA 4,685,600 0.3970
3 Adept_PhiX_CB4 TGTGTCGACA TGTCTGACAG 4,459,315 0.3778
4 Adept_PhiX_CB2 CACAGATCGT ACGAGAGTCT 3,878,518 0.3286
5 Adept_PhiX_CB3 GCACATAGTC GACTACTAGC 3,135,337 0.2656
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 CGCGCCAAGA AAATCCAAGG 5,667,023 0.4801
2 CGCGCCAAAG AATCCAAGGA 1,714,497 0.1453
3 CGCGCAAAGA AAATCCAAGG 1,373,386 0.1164
4 CCGCCAAAGA AAATCCAAGG 1,174,618 0.0995
5 GCGCCAAAGA AAATCCAAGG 1,163,760 0.0986
6 CGCGCCAAAG AAATCAAGGA 1,042,740 0.0883
7 CGCGCCAAAG AAATCCAGGA 1,026,521 0.0870
8 CCCCCCAAGA AAATCCAAGG 856,105 0.0725
9 CCGCCCAAGA AAATCCAAGG 811,379 0.0687
10 CGCGCCCAAA AAATCCAAGG 789,165 0.0669
11 CGCCCAAAGA AAATCCAAGG 609,510 0.0516
12 CCGCGCCAAA AAATCCAAGG 534,816 0.0453
13 CGCGCCAAAG AAAATCCAAG 481,962 0.0408
14 CGGCCAAAGA AAATCCAAGG 435,565 0.0369
15 CGCCGCCAAA AAATCCAAGG 269,920 0.0229
16 CGCGCCAAAG AAATCCCAAG 238,251 0.0202
17 CGCGGCCAAA AAATCCAAGG 192,126 0.0163
18 CCCCCCAAGG AAATCCAAGG 182,809 0.0155
19 CGGCGCCAAA AAATCCAAGG 178,838 0.0152
20 CGCGCCAAAG AAACCAAGGA 165,853 0.0141
21 CGCGCCAGAT AAATCCAAGG 153,548 0.0130
22 GCGCCCAAGA AAATCCAAGG 125,433 0.0106
23 CGCGCCCCAG AAATCCAAGG 123,019 0.0104
24 CCCCCCAAAA AAATCCAAGG 104,008 0.0088
25 CCCCCCAAAG AAATCCAAGG 99,439 0.0084
26 CGCGCCCACG AAATCCAAGG 77,443 0.0066
27 CGCGCCAAAG CAAATCCAAG 76,566 0.0065
28 GCCCCTAGTC GACTACTAGC 73,843 0.0063
29 CGCCAAAGAT AAATCCAAGG 72,236 0.0061
30 CGCGCCAAAG AAATTCCAAG 65,269 0.0055
31 CGCGCCAAAG AATTCCAGGG 63,184 0.0054
32 CCGCCCAAGG AAATCCAAGG 59,879 0.0051
33 CGCGCCCCCG AAATCCAAGG 58,064 0.0049
34 CGCGCCAAAG ACTAGAAACA 53,695 0.0045
35 TGTGTCGACA TATCTGACGG 45,022 0.0038
36 CCCCCAAAGA AAATCCAAGG 44,664 0.0038
37 CGCCCCAAGG AAATCCAAGG 38,458 0.0033
38 CGCCCCAAAA AAATCCAAGG 37,120 0.0031
39 CGCGCCAAAG AACTCCCAGG 35,883 0.0030
40 CGCGCCAATC AAATCCAAGG 34,598 0.0029
41 CGCGCAAGAT AAATCCAAGG 31,944 0.0027
42 CGCCCCAAGA AAATCCAAGG 30,792 0.0026
43 CGCGCCAAAG CAATCCCAGG 30,691 0.0026
44 GCCCCTAGTC GACTCCTAGC 28,837 0.0024
45 CCGCCCAGAT AAATCCAAGG 27,516 0.0023
46 CGCGCCAAAG ATCCAAGGAC 26,609 0.0023
47 CGCGCCAAGT AAATCCAAGG 25,339 0.0021
48 CACAGATCGT ACGAGAGTGG 23,766 0.0020
49 CGCCCCCAAG AAATCCAAGG 23,719 0.0020
50 CGCGCCACCG AAATCCAAGG 22,810 0.0019
51 GCCCCAAAGA AAATCCAAGG 22,298 0.0019
52 CCCCCCAGAT AAATCCAAGG 20,679 0.0018
53 CGCGCCAAAG AATCCAAGGG 20,257 0.0017
54 CGCGCCATCT AAATCCAAGG 19,526 0.0017
55 CCCCGCCAAA AAATCCAAGG 18,279 0.0015
56 CGCGAAAGAT AAATCCAAGG 17,055 0.0014
57 CCCAAAGATC AAATCCAAGG 16,480 0.0014
58 CGCCCCCCAG AAATCCAAGG 16,060 0.0014
59 GCGCCAAGAT AAATCCAAGG 15,603 0.0013
60 CGCGCCAAAG AATTCCAAGA 15,576 0.0013
61 CGCGCCAAAG ACATCCCAGG 15,490 0.0013
62 CGCGCCAAAG AATCCCAGGA 15,429 0.0013
63 TGTGTCGACA TGTTTGACGG 15,425 0.0013
64 CGCGCCAAAG AAATCCCCGG 15,408 0.0013
65 CGCGCCAAAG AAATCAGGAC 14,563 0.0012
66 CCGCCAAGAT AAATCCAAGG 14,469 0.0012
67 ATGTCGCTAG CAAGCTCATA 14,427 0.0012
68 GCCCCCAAGA AAATCCAAGG 14,351 0.0012
69 CGCGCCGATC AAATCCAAGG 13,835 0.0012
70 CGCGCCAAAG AATCCCAGGG 13,580 0.0012
71 GCCAAAGATC AAATCCAAGG 13,547 0.0011
72 TGTGTCGACA TGACTGACGG 13,334 0.0011
73 CGCCCCCCCG AAATCCAAGG 13,185 0.0011
74 CGCAAAGATC AAATCCAAGG 12,559 0.0011
75 TGTGTCGACA TATTTGACAG 11,112 0.0009
76 CACAGATCGT ACAAGAGTCG 10,938 0.0009
77 CGCGCAAAGG AAATCCAAGG 10,477 0.0009
78 CGCGCCAAAG AATCAAGGAC 10,024 0.0008
79 CGCGCCANAN AAATCCAANN 9,813 0.0008
80 CGCGCCAAAG AAATCAAGGG 9,787 0.0008
81 CNCGCCAAAG NNATCCAAGG 9,634 0.0008
82 CGCGCCCCCC AAATCCAAGG 9,627 0.0008
83 CGCGCAGATC AAATCCAAGG 9,294 0.0008
84 CGCGCCAAAG CATTCCAAGG 9,138 0.0008
85 CCCCCCCAAA AAATCCAAGG 9,083 0.0008
86 CGCGCCCAAC AAATCCAAGG 9,037 0.0008
87 CGCGCCANAG AAATCCAANN 8,850 0.0007
88 CTCTCGCTAG CTAGCTCGTA 8,802 0.0007
89 ATGTCGCAAG CAAGCTCATA 8,460 0.0007
90 TGTGTCGACA TATTTGACGG 8,173 0.0007
91 GCCCATAGAC GACTACTAGC 7,996 0.0007
92 CGCGCCAAAG CAAAACCAAA 7,729 0.0007
93 CGCGCCANNN AAATCCAANN 7,702 0.0007
94 CGCGCCAAAG AAATCCAGAC 7,479 0.0006
95 CGCGCCAAAG NNATCCAAGG 7,194 0.0006
96 ATCTCGCAAG CTAGCTCGTA 7,179 0.0006
97 CCCCCCAAAT AAATCCAAGG 6,789 0.0006
98 CGCGCCAAAG AAATCCAANN 4,726 0.0004
99 CNCGCCAAAN AAATCCAANG 4,527 0.0004
100 CGCGCCANNN AAATCCANNN 4,455 0.0004
101 CGCGCCAANN AAATCCAANN 4,425 0.0004
102 CGCCCAAGAT AAATCCAAGG 4,124 0.0003
103 CGCGCCAAAG AAATCAAAGA 4,084 0.0003
104 CGCGCCAAAG ACATCCACGG 3,855 0.0003
105 CGCGCCAAAG NAATCCCAGG 3,810 0.0003
106 CGCGCCAAAG AAAACCCAAG 3,773 0.0003
107 CGCGCCCCAC AAATCCAAGG 3,612 0.0003
42.3
Mean Q
96.6%
Q30
86.2%
Q40
N/A
Reads eliminated
29.0
Mean read length
N/A
Trim type
N/A
Min read length