aviti0423A
Run Name
30 + 92
Lane 1 (R1 + R2)
30 + 92
Lane 2 (R1 + R2)
1,334,593,974
Polonies
97.0%
Q30
99.5%
Index Assignment
161.924
Assigned Yield (Gb)
0 + 10
Lane 1 (I1 + I2)
0 + 10
Lane 2 (I1 + I2)
N/A
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th Adept_PhiX_CB3 GACTACTAGC 1,764,387 0.1322
50th Adept_PhiX_CB1 CTAGCTCGTA 2,302,430 0.1725
95th 10XSC0361 GACTGATCAT 1,318,656,047 98.8058
All Indices
# Sample I1 I2 Polonies % Polonies
1 10XSC0361 GACTGATCAT 1,318,656,047 98.8058
2 Adept_PhiX_CB2 ACGAGAGTCT 2,347,437 0.1759
3 Adept_PhiX_CB1 CTAGCTCGTA 2,302,430 0.1725
4 Adept_PhiX_CB4 TGTCTGACAG 2,265,894 0.1698
5 Adept_PhiX_CB3 GACTACTAGC 1,764,387 0.1322
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 GACTGATATA 1,243,517 0.0932
2 GACTGATCTA 781,280 0.0585
3 GACTGTCATA 679,430 0.0509
4 GATGATCATA 416,835 0.0312
5 GACTGACATA 234,998 0.0176
6 GCTGATCATA 230,682 0.0173
7 GACGATCATA 223,605 0.0168
8 GACTATCATA 203,463 0.0152
9 ACTGATCATA 188,126 0.0141
10 GAACTGATCA 177,269 0.0133
11 GACTGAATCA 159,717 0.0120
12 GGACTGATCA 151,015 0.0113
13 GACTGGATCA 142,919 0.0107
14 GACCTGATCA 88,517 0.0066
15 CGACTGATCA 84,101 0.0063
16 GACTGATCCA 81,045 0.0061
17 GACTTGATCA 65,065 0.0049
18 GACTGATTCA 61,479 0.0046
19 GACTGTCCTA 31,636 0.0024
20 GACTGATCNN 24,455 0.0018
21 GACTTATTAT 22,796 0.0017
22 GACTGATTAC 20,805 0.0016
23 GACTGCTCGC 17,334 0.0013
24 GACTATCCTA 12,423 0.0009
25 CAAGCACGTA 11,844 0.0009
26 GACTGATATT 11,750 0.0009
27 GACTGGATCT 11,137 0.0008
28 GACTGATACA 10,907 0.0008
29 NNCTGATCAT 9,623 0.0007
30 GACTGGTTAT 6,280 0.0005
31 GACTGATNNN 5,837 0.0004
32 TATCTAACAG 5,790 0.0004
33 GATGATCCTA 3,942 0.0003
41.5
Mean Q
95.4%
Q30
82.3%
Q40
N/A
Reads eliminated
30.0
Mean read length
N/A
Trim type
N/A
Min read length