# Stats by region from coverage track. # mapping algorithm: mapalgoG2_pe40x40_rptfilt_genome # coverage directory: bowtie_bam # region file directory: /hive/groups/wet/illumina/geneModels/mm10/gtf # filter file: NONE # # coverage file : SAMPLE_mm10.ih1.rd1.bowtie.strandb.cov.trk.bw # region file . cds : mm10_knowngene_regions_cds.strandb.bed.trk.gz # region file . utr3 : mm10_knowngene_regions_utr3.strandb.bed.trk.gz # region file . utr5 : mm10_knowngene_regions_utr5.strandb.bed.trk.gz # region file . nc : mm10_knowngene_regions_nc.strandb.bed.trk.gz # region file . intron : mm10_knowngene_regions_intron.strandb.bed.trk.gz # region file . intergenic : mm10_knowngene_regions_intergenic.strandb.bed.trk.gz # # basesCds : 35.22M # basesUtr3 : 29.02M # basesUtr5 : 5.48M # basesNc : 7.82M # basesIntron : 1006.20M # basesExon : 77.54M # # covTot: total coverage of all regions # covCds: total coverage of cds regions # covUtr3: total coverage of 3' UTR regions # covUtr5: total coverage of 5' UTR regions # covNc: total coverage of nonCoding regions # covIntron: total coverage of intronic regions # covInter: total coverage of intergenic regions # # covExon: covCds + covUtr3 + covUtr5 + covNc # # pctCds: covCds/covTot # pctUtr3: covUtr3/covTot # pctUtr5: covUtr5/covTot # pctNc: covNc/covTot # pctExon: covExon/covTot # pctIntron: covIntron/covTot # pctInter: covInter/covTot # # pxtCds: covCds/covExon # pxtUtr3: covUtr3/covExon # pxtUtr5: covUtr5/covExon # pxtNc: covNc/covExon # # denCds: covCds/basesCds # denUtr3: covUtr3/basesUtr3 # denUtr5: covUtr5/basesUtr5 # denNc: covNc/basesNc # denExon: covExon/basesExon # denIntron: covIntron/basesIntron # #Sample covTot covCds pctCds pxtCds denCds covUtr3 pctUtr3 pxtUtr3 denUtr3 covUtr5 pctUtr5 pxtUtr5 denUtr5 covNc pctNc pxtNc denNc covExon pctExon denExon covIntron pctIntron denIntron covInter pctInter e16_ctl_yz004 1637.95M 33.08M 2.02% 32.60% 0.939 22.23M 1.36% 21.90% 0.766 19.84M 1.21% 19.55% 3.622 26.34M 1.61% 25.95% 3.369 101.49M 6.20% 1.309 647.65M 39.54% 0.644 888.81M 54.26% e16_ctl_yz008 1537.59M 29.48M 1.92% 32.22% 0.837 19.83M 1.29% 21.67% 0.683 19.46M 1.27% 21.27% 3.551 22.72M 1.48% 24.83% 2.906 91.48M 5.95% 1.180 593.34M 38.59% 0.590 852.77M 55.46% e16_ctl_yz011 1753.91M 37.77M 2.15% 30.48% 1.072 23.74M 1.35% 19.15% 0.818 29.85M 1.70% 24.08% 5.449 32.58M 1.86% 26.29% 4.168 123.95M 7.07% 1.599 675.69M 38.52% 0.672 954.27M 54.41% e16_ctl_yz012 1686.16M 36.07M 2.14% 31.67% 1.024 23.18M 1.37% 20.35% 0.799 24.16M 1.43% 21.22% 4.411 30.47M 1.81% 26.76% 3.898 113.89M 6.75% 1.469 656.32M 38.92% 0.652 915.95M 54.32% e16_shh_yz001 1647.12M 36.54M 2.22% 32.84% 1.037 21.59M 1.31% 19.40% 0.744 28.91M 1.76% 25.98% 5.277 24.22M 1.47% 21.77% 3.098 111.26M 6.75% 1.435 635.78M 38.60% 0.632 900.09M 54.65% e16_shh_yz005 2295.19M 52.73M 2.30% 33.57% 1.497 32.07M 1.40% 20.42% 1.105 37.06M 1.61% 23.60% 6.765 35.20M 1.53% 22.41% 4.502 157.05M 6.84% 2.026 918.86M 40.03% 0.913 1219.28M 53.12% e16_shh_yz006 1644.46M 37.05M 2.25% 32.45% 1.052 22.31M 1.36% 19.55% 0.769 29.28M 1.78% 25.65% 5.346 25.51M 1.55% 22.35% 3.263 114.16M 6.94% 1.472 646.91M 39.34% 0.643 883.39M 53.72% e16_shh_yz007 2097.87M 46.03M 2.19% 35.02% 1.307 29.13M 1.39% 22.16% 1.004 27.60M 1.32% 21.00% 5.038 28.68M 1.37% 21.82% 3.669 131.45M 6.27% 1.695 845.88M 40.32% 0.841 1120.55M 53.41% e16_shh_yz010 1780.47M 38.48M 2.16% 30.25% 1.092 23.99M 1.35% 18.86% 0.827 30.27M 1.70% 23.79% 5.525 34.47M 1.94% 27.10% 4.410 127.21M 7.14% 1.641 683.38M 38.38% 0.679 969.88M 54.47% e16_shh_yz014 1367.61M 30.49M 2.23% 32.53% 0.866 19.30M 1.41% 20.59% 0.665 18.50M 1.35% 19.74% 3.377 25.43M 1.86% 27.14% 3.253 93.72M 6.85% 1.209 545.00M 39.85% 0.542 728.89M 53.30% e16_shh_yz016 1050.35M 22.87M 2.18% 28.87% 0.649 14.14M 1.35% 17.86% 0.487 17.71M 1.69% 22.36% 3.232 24.48M 2.33% 30.91% 3.131 79.20M 7.54% 1.021 395.51M 37.66% 0.393 575.64M 54.80% e16_shh_yz017 2150.40M 48.67M 2.26% 30.40% 1.382 29.30M 1.36% 18.30% 1.010 40.06M 1.86% 25.02% 7.313 42.08M 1.96% 26.28% 5.383 160.11M 7.45% 2.065 835.71M 38.86% 0.831 1154.57M 53.69%