First stage alignment aligned reads total 1: 75471298 First stage alignment aligned reads total 2: 70681268 First stage alignment aligned multi-reads 1: 4966889 First stage alignment aligned multi-reads 2: 4435140 Second stage alignment aligned reads total 1: 0 Second stage alignment aligned reads total 2: 0 Second stage alignment aligned multi-reads 1: 0 Second stage alignment aligned multi-reads 2: 0