track Kinnex
group expression
compositeTrack on
shortLabel Kinnex BAMs
longLabel Kinnex BAM Alignments
dragAndDrop subTracks
visibility hide
type bam
indelDoubleInsert on
indelQueryInsert on
showNames off
bamColorMode gray
bamGrayMode aliQual
pairEndsByName on
priority 6

    track kinnex_1
    parent Kinnex
    bigDataUrl Eulemur_macaco.1.bam
    shortLabel Kinnex_BAM 1
    longLabel Kinnex_BAM 1 - Eulemur_macaco.1
    type bam
    priority 1

    track isoseq_2
    parent Kinnex
    bigDataUrl Eulemur_macaco.2.bam
    shortLabel Kinnex_BAM 2
    longLabel Kinnex_BAM 2 - Eulemur_macaco.2
    type bam
    priority 2

track SEDEF_SD_arcs
group varRep
visibility full
shortLabel SEDEF SD arcs
longLabel SEDEF segmental duplications (arcs; blue=intra-chrom, orange=inter-chrom, shade=%identity)
type bigInteract
bigDataUrl sedef_sd.bb
interactDirectional on
maxHeightPixels 200:100:20
spectrum on
priority 4.9

track SEDEF_SD_regions
group varRep
visibility pack
shortLabel SEDEF SD regions
longLabel SEDEF segmental duplication regions (label=partner locus & %identity; blue=intra-chrom, orange=inter-chrom)
type bigBed 9 .
bigDataUrl sedef_sd_regions.bb
itemRgb on
priority 5