# grouping for fibers track pri-FIRE-fibers compositeTrack on shortLabel pri-FIRE-fibers longLabel pri-FIRE-fibers type bigBed 12 + maxItems 100000 visibility dense priority 80 html fire-description.html # grouping for peaks track pri-FIRE-peaks compositeTrack on shortLabel pri-FIRE-peaks longLabel pri-FIRE-peaks type bigBed 12 + maxItems 100000 visibility dense priority 30 html fire-description.html # track of unreliable regions just above the peak tracks track pri-unreliable-FIRE-coverage-regions parent pri-FIRE-peaks shortLabel pri-unreliable-FIRE-coverage-regions longLabel pri-unreliable-FIRE-coverage-regions type bigBed bigDataUrl bb/unreliable-coverage-regions.bb visibility dense priority 29 # grouping for coverage track pri-FIRE-coverage superTrack on show shortLabel pri-FIRE-coverage longLabel pri-FIRE-coverage priority 90 html fire-description.html track pri-all-FIRE-coverage parent pri-FIRE-coverage longLabel pri-all-FIRE-coverage shortLabel pri-all-FIRE-coverage container multiWig aggregate stacked showSubtrackColorOnUi on type bigWig 0 1000 autoScale off alwaysZero on viewLimits 0:57 visibility full maxHeightPixels 100:50:8 html fire-description.html priority 90 track pri-all-FIRE-accessible parent pri-all-FIRE-coverage bigDataUrl bw/all.fire.coverage.bw type bigWig color 139,0,0 track pri-all-FIRE-linker parent pri-all-FIRE-coverage bigDataUrl bw/all.linker.coverage.bw type bigWig color 147,112,219 track pri-all-FIRE-nucleosome parent pri-all-FIRE-coverage bigDataUrl bw/all.nucleosome.coverage.bw type bigWig color 169,169,169 track pri-narrow-FIRE-peaks parent pri-FIRE-peaks type bigNarrowPeak bigDataUrl bb/fire-peaks.bb shortLabel pri-FIRE-peaks longLabel pri-FIRE-peaks visibility dense maxHeightPixels 50:50:1 track pri-FIRE-hap-differences parent pri-FIRE-peaks type bigBed 9 + itemRgb on bigDataUrl bb/hap_differences.bb shortLabel pri-FIRE-hap-differences longLabel pri-FIRE-hap-differences visibility dense maxHeightPixels 25:25:1 track pri-wide-FIRE-peaks parent pri-FIRE-peaks shortLabel pri-wide-FIRE-peaks longLabel pri-wide-FIRE-peaks type bigBed bigDataUrl bb/fire-wide-peaks.bb visibility dense maxItems 100000 priority 30 track pri-FIRE-percent-accessible shortLabel pri-FIRE-percent-accessible longLabel pri-FIRE-percent-accessible graphTypeDefault points aggregate transparentOverlay container multiWig aggregate none showSubtrackColorOnUi on type bigWig 0 1000 alwaysZero on viewLimits 0:100 autoScale off maxItems 100000 visibility full maxHeightPixels 100:50:8 priority 1 yLineOnOff on yLineMark 100 html fire-description.html gridDefault on track pri-all-FIRE-percent-accessible parent pri-FIRE-percent-accessible shortLabel pri-all-FIRE-percent-accessible longLabel pri-all-FIRE-percent-accessible bigDataUrl bw/all.percent.accessible.bw type bigWig visibility hide color 0,0,0 track pri-H1-FIRE-fibers parent pri-FIRE-fibers shortLabel pri-H1-FIRE-fibers longLabel pri-H1-FIRE-fibers visibility dense type bigBed 12 + itemRgb On filterText.keywords H1 bigDataUrl bb/fire-fibers.bb decorator.default.bigDataUrl bb/fire-fiber-decorators.bb decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE decorator.default.filterValuesDefault.keywords LINKER,FIRE track pri-H2-FIRE-fibers parent pri-FIRE-fibers shortLabel pri-H2-FIRE-fibers longLabel pri-H2-FIRE-fibers visibility dense type bigBed 12 + itemRgb On filterText.keywords H2 bigDataUrl bb/fire-fibers.bb decorator.default.bigDataUrl bb/fire-fiber-decorators.bb decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE decorator.default.filterValuesDefault.keywords LINKER,FIRE track pri-UNK-FIRE-fibers parent pri-FIRE-fibers shortLabel pri-UNK-FIRE-fibers longLabel pri-UNK-FIRE-fibers visibility dense type bigBed 12 + itemRgb On filterText.keywords UNK bigDataUrl bb/fire-fibers.bb decorator.default.bigDataUrl bb/fire-fiber-decorators.bb decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE decorator.default.filterValuesDefault.keywords LINKER,FIRE track pri-hap1-FIRE-percent-accessible parent pri-FIRE-percent-accessible shortLabel pri-hap1-FIRE-percent-accessible longLabel pri-hap1-FIRE-percent-accessible bigDataUrl bw/hap1.percent.accessible.bw type bigWig visibility full color 0,0,255 track pri-hap2-FIRE-percent-accessible parent pri-FIRE-percent-accessible shortLabel pri-hap2-FIRE-percent-accessible longLabel pri-hap2-FIRE-percent-accessible bigDataUrl bw/hap2.percent.accessible.bw type bigWig visibility full color 255,0,0 track pri-FIRE-FDR compositeTrack on shortLabel pri-FIRE-FDR longLabel pri-FIRE-FDR type bigWig 0 1000 maxItems 100000 maxHeightPixels 100:50:1 alwaysZero on priority 10 html fire-description.html track pri-log-FIRE-FDR parent pri-FIRE-FDR bigDataUrl bw/log_FDR.bw shortLabel pri -10log10 FDR longLabel pri -10log10 FDR autoScale on visibility hide yLineOnOff on yLineMark 13.010299956639813 gridDefault on track consensusGenes type bigBed 12 bigDataUrl consensusGenes.bb shortLabel Consensus Genes longLabel Consensus Gene Set - Final Annotations color 0,60,120 priority 1 visibility pack itemRgb on searchIndex name track transMap type bigBed 12 bigDataUrl transMap.bb shortLabel TransMap longLabel TransMap - Homology-based Gene Mappings color 120,60,0 priority 2 visibility dense track augustusTM type bigBed 12 bigDataUrl augustusTM.bb shortLabel Augustus TM longLabel Augustus with TransMap Hints color 0,120,60 priority 3 visibility dense track augustusPB type bigBed 12 bigDataUrl augustusPB.bb shortLabel Augustus PB longLabel Augustus with PacBio/IsoSeq Hints color 120,0,60 priority 4 visibility dense track liftoff type bigBed 12 bigDataUrl liftoff.bb shortLabel Liftoff longLabel Liftoff - Reference-based Annotations color 60,120,0 priority 5 visibility dense track isoseq_bams_PPG00030~Macaca_nemestrina.pri~verkko group expression compositeTrack on shortLabel IsoSeq BAMs longLabel IsoSeq BAM Alignments dragAndDrop subTracks visibility hide type bam indelDoubleInsert on indelQueryInsert on showNames off bamColorMode gray bamGrayMode aliQual pairEndsByName on priority 6 track isoseq_1 parent isoseq_bams_PPG00030~Macaca_nemestrina.pri~verkko bigDataUrl Macaca_nemestrina.1.bam shortLabel IsoSeq 1 longLabel IsoSeq BAM 1 - Macaca_nemestrina.1 type bam priority 1 track isoseq_2 parent isoseq_bams_PPG00030~Macaca_nemestrina.pri~verkko bigDataUrl Macaca_nemestrina.2.bam shortLabel IsoSeq 2 longLabel IsoSeq BAM 2 - Macaca_nemestrina.2 type bam priority 2