Panprimate Consensus Gene Annotations

This track hub contains consensus gene annotations for multiple primate species, along with various sources of evidence used in the annotation process.

Track Categories

• Consensus Genes: Final consensus gene set combining all evidence
• TransMap: Gene annotations mapped from reference genome
• Augustus (TM): Ab initio predictions using transMap hints
• Augustus (PB): Ab initio predictions using PacBio/IsoSeq hints
• Liftoff: Lifted over annotations from reference genome

Species Included

• Eulemur fulvus
• Eulemur macaco
• Eulemur rubriventer
• Leontopithecus rosalia
• Lagothrix lagotricha
• Pithecia pithecia
• Colobus angolensis
• Mandrillus leucophaeus
• Papio anubis
• Macaca nemestrina

Methods

Annotations were generated using the Comparative Annotation Toolkit (CAT) with multiple lines of evidence including homology-based mapping (transMap), ab initio prediction (Augustus), reference-based liftoff, and validation with PacBio IsoSeq data.