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"Exon Annotation Support": {}, "AugPB Classes": { "possible_paralog": 6365, "putative_novel_isoform": 32266, "putative_novel": 24974 }, "denovo": { "augPB": { "Possible paralog": 0, "Poor alignment": 0, "Putative novel": 0, "Putative novel isoform": 0, "Discarded": 0 } }, "Discarded by source gene conflicts": 12846, "Completeness": { "Gene": { "lncRNA": 35130, "unprocessed_pseudogene": 1904, "transcribed_unprocessed_pseudogene": 1410, "protein_coding": 19421, "processed_pseudogene": 9152, "rRNA_pseudogene": 500, "rRNA": 298, "misc_RNA": 2219, "snRNA": 1778, "transcribed_processed_pseudogene": 1218, "miRNA": 2057, "unknown_likely_coding": 17993, "snoRNA": 899, "transcribed_unitary_pseudogene": 190, "TEC": 1292, "unitary_pseudogene": 84, "scaRNA": 46, "IG_C_gene": 14, "IG_J_gene": 18, "IG_V_gene": 115, "IG_V_pseudogene": 150, "Mt_tRNA": 80, "IG_D_gene": 26, "IG_J_pseudogene": 3, "IG_C_pseudogene": 8, "ribozyme": 8, "TR_J_gene": 79, "TR_J_pseudogene": 4, "TR_V_gene": 114, "TR_C_gene": 5, "TR_D_gene": 5, "TR_V_pseudogene": 38, "translated_processed_pseudogene": 1, "vault_RNA": 4, "sRNA": 3, "Mt_rRNA": 6, "artifact": 15 }, "Transcript": { "lncRNA": 177590, "unprocessed_pseudogene": 1964, "transcribed_unprocessed_pseudogene": 1442, "protein_coding": 222453, "retained_intron": 35161, "protein_coding_CDS_not_defined": 26288, "processed_pseudogene": 9262, "rRNA_pseudogene": 500, "rRNA": 298, "misc_RNA": 2220, "snRNA": 1779, "transcribed_processed_pseudogene": 1220, "miRNA": 2057, "nonsense_mediated_decay": 25650, "unknown_likely_coding": 50701, "non_stop_decay": 137, "snoRNA": 899, "transcribed_unitary_pseudogene": 190, "TEC": 1409, "unitary_pseudogene": 86, "scaRNA": 46, "IG_C_gene": 34, "IG_J_gene": 22, "IG_V_gene": 177, "IG_V_pseudogene": 153, "Mt_tRNA": 80, "protein_coding_LoF": 124, "processed_transcript": 12, "IG_D_gene": 26, "IG_J_pseudogene": 3, "IG_C_pseudogene": 8, "ribozyme": 8, "TR_J_gene": 85, "TR_J_pseudogene": 4, "TR_V_gene": 218, "TR_C_gene": 7, "TR_D_gene": 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