##
# varRep
##
track centromericSatellite
shortLabel CenSat
longLabel Centromeric Satellite Annotation
group varRep
visibility full
itemRgb on
maxItems 1000000
maxWindowToDraw 500000000
type bigBed 9
bigDataUrl PAN010.polished.diploid.cenSat.bb
priority 1

##
# varRep
##
track nucflagHifi
shortLabel nucflagHifi
longLabel QC annotation of coverage and secondary allele frequencies using NucFlag and HiFi reads
group varRep
visibility full
itemRgb on
maxItems 1000000
maxWindowToDraw 500000000
type bigBed 4
bigDataUrl nucflag.hifi.PAN010.bb
priority 1

##
# varRep
##
track flaggerHifi
shortLabel flaggerHifi
longLabel QC annotation of coverage using Flagger and HiFi reads
group varRep
visibility full
itemRgb on
maxItems 1000000
maxWindowToDraw 500000000
type bigBed 9
bigDataUrl flagger.PAN010.hifi.bb
priority 1

##
# varRep
##
track flaggerONT
shortLabel flaggerONT
longLabel QC annotation of coverage using Flagger and ONT reads
group varRep
visibility full
itemRgb on
maxItems 1000000
maxWindowToDraw 500000000
type bigBed 9
bigDataUrl flagger.PAN010.ONT.bb
priority 1

##
# varRep
##
track centrodip
shortLabel centrodip
longLabel CDRs and subCDRs detected using methylation dips in centromeres
group varRep
visibility full
itemRgb on
maxItems 1000000
maxWindowToDraw 500000000
type bigBed 9
bigDataUrl centrodip.PAN010.bb
priority 1