NWM-SF-track, classification and monomer-by-monomer annotation of alpha satellite suprachromosomal families and pericentromeric monomer layers in T2T NWM genome assembly.
Based on the phylogenetic and genomic analysis of alpha satellites in marmoset calJac240_pri genome assembly. Alpha satellite monomer class sequences were established as multiple sequence alignment HMM profiles and processed by HMMER to create a monomer-by-monomer annotation track for UCSC Genome Browser.
Hits with score to length ratio less then 0.7 were removed from annotation
SubSFs of NWM-SF1 are colored in different shades of red
Contact Fedor Ryabov <fedorrik1@gmail.com>
Contact Ivan A. Alexandrov <ivanalx@hotmail.com>
Fedor Ryabov (HSE University, Moscow, Russia)
Lev I. Uralsky (1. Sirius University of Science and Technology, Sochi, Russia; 2. Vavilov Institute of General Genetics, Moscow, Russia)
Valery A. Shepelev (Institute of Molecular Genetics, Moscow, Russia (currently retired))
Ivan A. Alexandrov (Tel Aviv University, Israel)