include isoseq.txt
include genes.txt
track methylation_5mc
shortLabel 5mC Methylation
longLabel 5-methylcytosine Methylation
type bigWig
bigDataUrl 5mc_methylation.bigwig
group methylation
visibility full
autoScale off
viewLimits 0:100
yLineOnOff on
priority 10
color 102,0,204
html descriptionHtml/methylation_5mc.html

track segmental_dups
shortLabel Segmental Duplications
longLabel Segmental Duplications
type bigBed
bigDataUrl SD.bb
group seg_dups
visibility pack
priority 15
color 150,100,200
html descriptionHtml/segmental_dups.html

track censat
shortLabel Centromeric Satellites
longLabel Centromeric Satellites
type bigBed
bigDataUrl cenSat.bb
group cenSat
visibility pack
priority 20
itemRgb on
html descriptionHtml/censat.html

track centrodip
shortLabel Centromere Dip
longLabel Centromere Dip Regions
type bigBed
bigDataUrl centrodip.bb
group cenSat
visibility pack
priority 21
color 100,150,200
html descriptionHtml/centrodip.html

track dimhap
shortLabel NWM Centromere SF annotations - dimhaps
longLabel NWM Centromere SF annotations - dimhaps
type bigBed
bigDataUrl dimhap.bb
group cenSat
visibility pack
priority 25
itemRgb on
html descriptionHtml/dimhap.html

track humSF
shortLabel NWM Centromere SF annotations - humSF
longLabel NWM Centromere SF annotations - humSF
type bigBed
bigDataUrl humSF.bb
group cenSat
visibility pack
priority 30
itemRgb on
html descriptionHtml/humSF.html

track nwmSF03
shortLabel NWM Centromere SF annotations - nwmSF03
longLabel NWM Centromere SF annotations - nwmSF03
type bigBed
bigDataUrl nwmSF.03.bb
group cenSat
visibility hide
priority 35
itemRgb on
html descriptionHtml/nwmSF03.html

track nwmSF07
shortLabel NWM Centromere SF annotations - nwmSF07
longLabel NWM Centromere SF annotations - nwmSF07
type bigBed
bigDataUrl nwmSF.07.bb
group cenSat
visibility hide
priority 40
itemRgb on
html descriptionHtml/nwmSF07.html

track nwmSFstrand
shortLabel NWM Centromere SF annotations - strand
longLabel NWM Centromere SF annotations - strand
type bigBed
bigDataUrl nwmSF_strand.bb
group cenSat
visibility hide
priority 45
itemRgb on
html descriptionHtml/nwmSFstrand.html