##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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1572	1	0
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3	318	0
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8	0	4
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12293	370144	311619
28743	5	0
1696	0	10
297	5	0
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932	0	5
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191	20	0
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861	8	2382
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8	7359	0
121	41202	12166
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21	32335	47635
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568	25850	14932
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5	0	25
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8	10	0
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557	0	30
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44	27830	0
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3624	0	5
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2166	42099	8892
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76	0	5
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206	5565	0
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10	9	0
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12	15	0
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4	70	0
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10	0	34
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6	50	0
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24	0	10
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12961	3411	3411
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4078	3372	3372
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530	2	0
2613	1	0
1095	0	4
12695	0	1
6099	0	1
73	12	0
272	0	2
2724	2	0
4392	0	1
9625	1	0
7862	1	0
13514	4	0
253	1	0
73	0	1
13870	0	2
11269	1	0
168	0	1
782	1	0
16952	2	0
5226	1	0
1856	0	1
11571	29	0
27	0	58
687	6	0
106	6	0
3	0	6
107	7	0
1	0	1
75	1	0
52	0	10
1	0	2
43	0	1
10	0	1
15	2	0
3	0	1
10	4	0
20	8	0
91	16	18
28	1	0
2	4	0
25	151	36
14	68	17
21	7	0
7	18	0
2	0	2
12	0	1
18	21	3
13	12	7
5	1	0
10	12	5
5	1	0
26	11	23
12	7	0
12	8	0
6	1	0
13	4	0
5	0	7
2	0	3
6	0	20
11	1	13
15	0	2
22	45	76
28	0	1
49	3	0
15	3	0
59	7	0
3	0	1
10	0	30
26	0	18
1	3	0
21	3	0
59	17	0
2	0	2
9	3	0
8	1	510
32	4	0
66	4	0
70	4	0
60	0	1
6	834	1
56	0	5
53

chain 11270777 NA20752_chrY 52219872 + 24076179 24227266 HG002_chrY 62432599 - 38399346 38539790 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
105	0	1
53	0	4
552	0	2381
638	1	0
67	4	0
123	1	0
13	4	0
207	6	0
429	1	0
145	1	0
20	1	0
8	15	0
46	0	1
62	0	1
60	0	4
498	0	2
210	1	0
435	29933	6092
7	1	0
2251	0	1
3446	1	0
864	1	0
1457	0	11
1558	1	0
3724	1	0
3316	5	0
3200	1	0
1163	0	2
860	0	1
9915	1	0
195	0	8
4130	12	0
1653	4	0
2516	0	1
1668	1	0
2015	0	1
3438	12	0
33123	0	6
224	1	0
95

chain 3058316 NA20752_chrY 52219872 + 21858572 21890865 HG002_chrY 62432599 - 40507615 40539913 3
6287	0	1
5505	0	4
20501

chain 427764 NA20752_chrY 52219872 + 23191748 23196259 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 322611 NA20752_chrY 52219872 + 14768727 14772135 HG002_chrY 62432599 - 47507067 47510475 5
3408

chain 6804 NA20752_chrY 52219872 + 24235405 24235565 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158

chain 2683 NA20752_chrY 52219872 + 12382406 12382434 HG002_chrY 62432599 + 12511308 12511336 7
28

chain 1346 NA20752_chrY 52219872 + 52218769 52218783 HG002_chrY 62432599 + 62432585 62432599 8
14