##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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179	10	0
76	2	0
49	0	2
183	0	15
6	2	0
651	4	0
1	8	0
33	2	0
7	0	4
58	28	0
1241	2	0
291	0	2
3215	0	2
2995	134	0
859	1	0
559	0	1
172	0	1
10356	4	0
486	4	0
5884	0	3
1048	1	0
2015	33	7
23	26	0
937	0	2
105	0	1
381	0	2
429	0	20
1943	2	0
5796	0	1
1924	0	10
2428	2	0
980	114	69
327	0	45
546	45	0
359	31	0
827	0	1
365	8	0
351	4	0
377	0	4
317	0	6
19	0	16
1391	8	0
793	0	4
283	12	0
455	4	0
389	0	4
1941	0	4
1483	0	14
1400	0	1
1719	56	0
120	0	2
112	0	29
35	2	31
60	0	4
1	0	2
26	3	1
56	0	2
26	0	2
18	0	2
55	0	27
39	27	0
52	0	2
211	0	4
1400	2	0
14	3	0
1519	3	0
474	3	0
11	1	0
58	6	0
19	23	0
13	0	11
11	4	0
8	3	0
5	4	0
18	0	1
1173	0	4
31	0	4
823	1	0
110	0	370
65	2	0
571	0	3
1	0	55
755	4	0
1739	3	0
1	2	0
11	1	0
81	0	816
11	0	4
199	4	0
45	2	0
517	0	1
510	12	0
65	0	12
103	0	1
115	12	4
358	16	0
125	12	0
83	36	0
20	12	0
120	0	4
18	0	16
7	0	8
160	0	4
79	20	0
172	0	4
1181	0	142
195	71	0
282	284	0
1128	0	2
434	0	9
3	0	706
262	0	1
264	0	3
37	4	0
3231	12	0
65	0	8
503	64	0
807	0	4
107	12	0
4597	0	2
2453	1	0
1132	0	1
370	28	0
512	1	0
141	0	1
1369	0	1
1094	2	0
143	0	1
480	1	0
28	0	5
1906	0	1
1773	0	96
330	49	0
48	0	49
7985	0	4
5653	0	4
10	0	9
719	0	1
1618	2	0
2274	0	1
704	0	4
10	0	4
60	400	0
28	89	0
81	121	0
93	12	0
20	176	2
55	71	0
9	26	0
321	0	6
125	6	0
76	0	2
22	2	0
192	0	4
60	0	4
1203	4	0
77	0	4
29	1	0
2151	0	5
302	1	0
7	4	0
269	0	12
32	0	4
457	4	0
80	20	0
103	0	4
32	4	0
14	4	0
27	8	0
32	0	4
504	4	0
172	0	4
2584	3	0
107	0	1
564	0	5
27	0	3
3662	0	1
170	4	0
11	1	0
12	2	0
353	0	4
131	3	0
740	0	2
401	0	4
26	0	2
882	0	3
13	0	9
893	0	2
2386	1	0
209	21	0
1003	0	1
181	0	1
531	0	4
286	0	1
29	1	0
31	1	0
7	124	0
93	0	1
328	1	0
246	4	0
703	1	0
827	0	2
314	1	0
1646	0	2
1187	1	0
5	0	4
1572	1	0
2893	0	1
41	2	0
3894	1	0
1459	4	0
118	0	2
3245	12	0
28	0	7
1	0	1
2757	538	0
530	1	0
3454	0	14
3741	4	0
12	4	0
43	0	8
56	0	4
85	4	0
13	4	0
58	4	0
302	4	0
14	4	0
68	0	4
48	4	0
32	0	4
19	0	4
37	0	4
524	0	5
811	0	1
243	0	1
2923	0	4
62	4	0
24	16	0
53	0	4
728	0	1
653	8	0
65	26	0
13	2	0
54	0	8
21	16	0
690	5786	0
18	797	8
477	0	1
239	0	1
153	2	0
362	2	0
4176	0	4
500	0	1
487	0	1
82	0	1
316	0	1
894	0	8
49	1	0
5073	0	2
871	0	1
2191	2	0
1110	0	1
445	268	0
637	0	259
2738	4	0
245	0	4
61	1	0
30	4	16
7	0	4
49	0	2
2115	0	3
538	0	4
124	0	18
776	0	18
2033	3	0
1871	0	2
29	0	18
484	0	1
1234	0	2
1381	135	0
205	5	0
2006	0	1
184	0	536
4	0	1
1200	148	0
557	0	885
86	0	590
276	0	295
2088	0	1
208	0	313
112	0	1
2950	4	0
168	0	4
366	2	0
600	2	0
133	0	2
45	135	0
2745	1	0
2433	2	0
268	0	1
7972	0	55
3193	0	1
8	3	0
8	0	1
551	0	4
30	0	1
3	0	12
1	0	3
75	0	9
10	0	14
722	2	0
1777	0	2
12129	106	0
4589	72	0
7812	1	0
2472	318	0
2477	0	2
865	2	0
32	12	0
347	2	0
335	12	0
347	2	0
60	0	1
1	0	117
68	6	0
94	4	0
16	665	11
132	0	140
135	2	0
12	2	0
105	1	0
861	0	2
1214	49	0
2129	1	0
5	2	0
1	1	0
16	34	0
1504	1	0
107	8	0
23	4	0
363	0	3
4	0	33
315	1	0
61	0	4
72	4	0
417	2	0
47	0	1
3	1	0
169	0	26
89	0	2
279	0	1
617	4	0
871	6	0
971	0	180
2	0	1
52	23	57
20	0	15
3	1	0
5	1	0
21	0	4
16	0	11
46	5	0
2	0	1
236	0	1
22	1	0
119	0	10
81	20	0
39	1	0
1	4	0
615	0	2
1133	3	0
138	0	1
638	2	0
1233	5	0
15	0	15
288	0	1
958	0	2
196	4	0
326	0	4
468	6	0
263	4	0
27	2	0
24	0	4
653	4	0
95	0	6
885	0	1
232	0	1
75	0	1
19	0	4
29	5	0
234	3867	3919
1039	4	0
42	4	0
50	0	2
168	1	0
3	0	2
103	0	4
784	0	1
105	0	47
37	0	54
3	1	0
5	0	1
3	3	0
31	3	0
12	0	8
8	544	23
14	1	3
24	120	25
9	64	0
4	7	0
31	772	5
37	63	0
11	20	0
14	0	6
11	7	0
10	15	0
7	1	0
15	0	1
6	0	2
5	2	0
4	26	0
15	20	0
6	63	19
9	439	0
3	1	0
9	3	0
65	13	0
7	13	0
37	131	0
4	1	0
10	1	0
6	2	0
7	1	0
6	46	0
9	25	6
11	26	0
10	5	0
8	24	12
10	0	1
8	81	10
9	16	0
31	153	30
19	10	0
7	3	0
9	183	5
35	18	0
68	37	0
2	2	0
14	94	75
23	26	23
17	11	0
11	1	0
7	1	0
2	0	1
12	240	19
11	26	0
48	0	1
42	4	0
1	9	0
14	24	0
27	118	7
21	3	0
4	1	0
6	19	0
9	8	0
1	2	0
35	0	1
77	0	23
12	0	1
3	0	4
6	353	0
145	197	32
76	0	4
16	61	0
12	0	24
9	43	34
13	3	0
3	0	8
5	6	0
5	0	4
6	0	6
17	4	0
12	0	1
6	0	7
9	0	1
13	0	24
1	0	1
8	0	1
3	0	2
6	528	29
438	1	0
28	0	1
244	5	0
2341	1	0
1764	832	0
1371	0	3
4	6	0
96	29	16
17	3	0
5	26	6
27	13	0
20	0	9
152	0	62
8	19	0
33	27	47
58	45	0
16	18	0
8	322	32
8	27	0
1186	0	3
586	29	0
28	1	0
194	1	0
16	0	2
830	2	0
2	83	0
773	1	0
2114	5	0
47	0	1
13	0	10
33	0	10
4729	2	0
539	3	0
4	0	2
967	30	0
152	2	0
38	0	2
60	2	0
4	0	6
2	0	2
17	0	20
8	2	0
322	0	1
1782	0	8
1427	4	0
1023	2	0
1420	4	0
542	1	0
12	0	2
1326	0	2
1037	184	0
28	60	0
32	88	0
32	56	28
78	60	0
14	0	4
28	4	0
28	28	0
57	92	0
339	0	2
1165	0	9
4	0	3
4	0	4
141	0	2
37	0	2
220	2	0
72	0	1
27	0	2
147	0	2
69	14	0
13	4	0
19	31	0
7	9	0
98	2	0
454	0	10
55	0	4
127	4	0
57	0	34
112	0	4
146	4	0
840	1	0
470	3	0
975	0	13
5	2	0
72	0	18
5928	0	5
1299	4	0
2203	0	2
5050	8	0
92	12	0
80	4	0
7471	0	4
1258	4	0
2065	0	1
5770	11	0
2	0	92
27	0	3
25	0	40
32	0	40
20	0	2
13	0	37
129	0	103
49	1	0
8	0	1
38	99	0
10	0	1
19	0	50
30	0	1
8	0	49
16	148	0
51	128	0
84	1	0
103	1	0
11	71	0
77	0	1
1	0	1
460	10	0
758	2	0
39	10	0
1044	0	4
274	0	3
433	1	0
324	1	0
952	0	4
319	0	38
505	0	4
3796	0	1
4998	0	8
7783	2	0
1033	0	1
7871	0	1
5551	0	1
105	0	5
2462	0	1
642	1	0
4026	0	2
376	1	0
1369	0	3
18	3	0
402	0	1
2	0	1
697	0	2
14	3	0
351	0	3
213	30	0
51	15	0
42	0	3
722	1	0
202	0	1
165	0	1
930	0	4
1061	1	0
225	1	0
1281	2	0
846	1	0
2972	1	0
141	0	5
193	1	0
147	5	0
3172	4	0
910	0	216
1026	432	0
524	0	430
1941	2	0
1	9	0
50	0	23
372	501	0
79	102	0
54	0	57
273	0	34
3	11	0
24	11	0
359	71	71
261	0	46
3082	0	1
2559	429	87
391	0	2
2957	0	39
18	0	38
69	0	39
103	0	78
3811	0	1
2112	0	1
659	0	19
68	30	87
54	123	9
29	54	320
793	0	4
137	0	4
45	0	8
20	4	0
42	24	0
157	0	14
35	0	4
28	4	0
947	2	0
314	1	0
585	1	0
758	1	0
74	0	1042
472	1	0
170	0	2
1436	16	0
163	0	1
174	2	0
727	35	0
836	2	0
308	1	0
90	4	0
934	1	0
352	34	0
39	0	13
341	5	0
2899	0	1
143	0	1
131	0	1
73	2	0
6275	1	0
553	0	1
1128	1	0
1113	122	0
6109	1	0
1227	0	4
229	0	1
1807	0	1
242	0	1
1372	0	4
87	0	2
443	1	0
4695	1	0
1530	0	18
11	26	0
5315	38	14
66	0	2
22	28	52
118	2	0
22	0	2
136	4	0
3619	0	12
786	0	9
23946	1	0
2487	0	4
21	7	0
5	17	0
11	10	31
216	0	3
84	18	0
515	0	1
622	0	4
26	0	29
3817	0	1
2050	0	4
2367	0	25
48	0	27
2331	0	67
227	4	0
561	0	4
937	0	4
1242	420	0
2069	1	0
4534	4	0
18	0	2
7	0	4
9	6	0
4	0	10
17	0	4
1	0	4
35	13	11
16	2	0
316	0	4
219	4	0
553	0	4
24	0	4
175	0	2
33	0	4
2243	0	4
246	0	10
90	2	0
573	0	1
2781	0	12
20	0	4
586	20	0
175	0	4
325	4	0
86	0	4
30	0	47
1966	4	0
1652	16	0
2840	4	0
12613	0	19
299	63	0
394	0	1
2294	1	0
3269	219	8
82	126	0
3846	0	38
8	0	114
76	0	38
173	0	38
4660	0	4
703	4	0
1838	0	2
1107	0	68
4	0	4
4478	0	4
2044	21	1
304	0	12
1117	4	0
3288	0	4
1324	0	8
20	0	189
2018	0	1
1676	0	2
2068	0	1
870	1	0
426	22	0
3115	5	0
256	2	0
2429	0	2
691	1	0
627	2	0
78	0	4
984	0	88
1082	180	0
19	176	0
2651	41	20
11	14	0
1404	3	0
1972	0	136
392	0	2
402	2	0
883	1	0
640	4	0
681	0	10
169	1	0
5113	0	7
3604	8	0
2	4	0
141	0	8
125	39	0
113	0	8
62	0	4
209	0	8
137	4	0
207	12	0
11	8	0
18	12	0
30	8	0
16	8	0
13	0	8
146	3	2
2564	2	0
1779	0	5
88	0	1
73	5	0
13	4	0
22	8	304
18	0	4
2	0	52
53	21	0
107	0	1
485	1	0
838	0	1
84	1	0
5652	0	1
2469	0	4
197	4	0
67	0	4
76	0	12
8	0	56
6228	12	0
4054	1	0
2966	12	0
16	8	0
286	3	0
293	1	0
300	2	0
1169	1	0
600	0	5
3379	4	0
781	0	1
215	2	0
576	1	0
3062	15	3
1179	1	0
12	0	1
817	0	1
153	0	1
1430	4	0
40	4	0
907	0	5
161	1	0
7	3	0
5144	4	0
4360	0	12
70	0	1
10435	0	1
4167	8	0
5846	12	13
2757	0	2
185	2	0
547	0	1
211	0	2
303	43	0
20	0	1
74	4	0
66	1	0
3	1	0
19	0	1
5	0	1
6	0	1
6	5	0
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12	18	0
31	0	2
16	0	1
2	0	4
5	0	2
9	0	2
1	2	0
12	0	5
1	0	1
1	0	1
7	0	1
16	1	0
35	0	1
17	1	0
17	0	10
77	0	1
40	0	2
61	0	19
2	0	2
11	16	0
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14	0	3
2	0	1
8	1	0
21	1	0
15	0	10
10	0	5
9	0	5
27	0	1
12	1	0
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15	0	3
3	0	1
10	1	0
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6	0	1
22	0	1
18	1	0
148	0	4
9	5	0
137	0	1
67	0	2
18	0	1
42	0	1
63	0	2
39	0	1
46	1	0
1179	0	1
1127	0	1
199	0	1
81	0	1
186	0	1
78	0	1
423	0	1
176	0	1
500	0	1
1310	0	1
898	0	21
38	0	2
77	1	0
46	0	1
804	0	1
262	94	0
58	47	0
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544	0	1
167	0	1
833	1	0
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267	0	1
390	0	1
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36	0	1
574	0	1
1071	0	1
49	0	3
678	0	1
469	0	1
414	374	0
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373	0	2
141	0	2
54	0	4
37	0	4
553	1	0
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836	1	0
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972	0	2
311	1	0
152	0	1
483	0	9
120	0	34
1948	0	1
259	1	0
1849	0	4
77	1	0
10	0	1
77	0	2
15	4	0
29	24	34
462	0	1
300	1	0
86	0	1
331	0	1
27	0	1
295	1	0
234	0	2
865	0	1
677	0	1
211	0	1
696	0	2
234	1	0
518	1	0
1257	4	0
208	0	2
505	0	1
64	0	1
747	0	1
398	1	0
1674	0	1
428	0	3
1336	0	1
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216	0	1
472	0	1
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155	0	1
1054	0	1
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24	0	4
1008	0	1
49	1	0
83	0	3
63	1	0
189	2	0
240	0	2
787	0	1
30	1	0
159	2	0
575	4	0
39	0	2
165	2	0
503	0	1
1428	0	1
625	5	0
1352	1	0
164	1	0
1799	48	46
80	2	0
1	0	165
46	0	83
33	166	0
84	0	83
74	0	82
7	0	83
1081	1	0
1408	0	3
494	0	1
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247	1	0
11	3	0
74	1	0
724	0	1
171	1	0
239	0	1
1	0	2
17	3	0
326	8	0
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59	1	0
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55	3	0
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40	0	1
9	0	1
704	0	1
619	0	1
315	0	1
9	0	1
38	0	3
159	0	1
535	3	0
70	0	1
152	0	1
192	1	0
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445	0	4
957	0	266
879	1	0
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129	0	2
337	0	1
21	5	0
587	1	0
433	0	2
940	0	1
492	0	1
292	0	1
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96	0	2
1405	0	1
440	0	2
18	3	0
891	0	4
82	2	0
1227	0	20
120	0	1
136	0	1
132	0	1
316	0	117
8	0	2
130	2	0
749	0	1
392	0	6
20	2	32
5	4	0
353	2	0
2	1	0
909	3	0
590	1	0
693	0	1
427	1	0
913	0	1
565	0	1
25	0	1
1169	0	12
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942	2	0
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834	1	0
719	0	1
488	1	0
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27	3	0
503	0	2
156	6	0
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75	1	0
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57	0	7
1	0	1
34	0	1
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2	0	1
8	1	0
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24	6	0
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4	4	0
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8	2	0
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16	5	22
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8	1	0
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12	0	2
5	0	2
1	0	2
20	0	4
48	0	8
4	0	30
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40	14	0
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14	278	357
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14	0	4
107	0	2
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294	0	7
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2162	4	0
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156	0	12
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17	0	1
724	0	74
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2721	1	0
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314	12	0
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27	0	2
8	0	2
722	0	2
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339	0	1
874	0	2
1154	210	180
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962	0	1
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1559	17	14
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540	0	296
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102	870	327
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1233	2	0
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548	0	25
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6446	1	0
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339	0	2
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3965	8	0
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18	5	9
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25	0	75
177	300	0
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6433	0	3326
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55	3	0
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4	0	20265
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106	0	8
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1926	1	0
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45	0	40601
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22	4	0
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37	0	121774
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8	7359	0
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2852	128328	120200
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118	0	1
50	0	3
253	2	0
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161	1542	0
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6663	0	1
892	6	0
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27090	9	0
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916	3	0
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3960	0	3
3675	1	0
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9575	12	0
49	0	4
83777	0	1
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5901	0	3
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54	0	3
6	12	0
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26	0	2
18590	1	0
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9565	1	0
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79	4	0
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11581	1	0
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5	0	20
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325	1	0
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1431	4	0
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287	1	0
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49	0	10
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63	2	0
23	0	2
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159	2	0
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23	0	4
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4875	1	0
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84	4	0
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7835	1	0
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8921	1	0
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12	0	2
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64	12	0
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11	0	2
1276	4	0
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14	0	1
3757	0	1
18	1	0
4	1	0
5379	1	0
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2	24	0
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18	0	8
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377	1	0
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530	2	0
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13	3	0
1	0	3
48	4	0
62	0	4
7094	0	1
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596	6	0
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74	4	0
4	0	1
1158	2	0
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13	0	5
7447	0	1
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378	0	2
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25	0	2
4727	4	0
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79	16	0
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3650	1	0
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773	0	1
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462	1	0
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14	0	1
52	3	0
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21	0	2
173	2	0
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32	0	2
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88	4	0
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1553	0	2
46	0	1
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3304	3377	3377
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185	48603	6037
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286	0	2
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249	0	1
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53

chain 116817014 NA19650_chrY 52099742 + 24396542 25672266 HG002_chrY 62432599 - 37148459 38401468 2
69	0	3
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399	15351	10839
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21231

chain 11270833 NA19650_chrY 52099742 + 24030589 24181674 HG002_chrY 62432599 - 38399346 38539790 3
17699	0	1
23	0	10850
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223	1	0
95

chain 3058316 NA19650_chrY 52099742 + 21813022 21845315 HG002_chrY 62432599 - 40507615 40539913 4
6287	0	1
5505	0	4
20501

chain 427764 NA19650_chrY 52099742 + 23146183 23150694 HG002_chrY 62432599 - 39338719 39343231 5
2490	0	1
2021

chain 372467 NA19650_chrY 52099742 + 26380662 26384607 HG002_chrY 62432599 - 37698898 37702843 6
3945

chain 6804 NA19650_chrY 52099742 + 24189813 24189973 HG002_chrY 62432599 - 38539790 38542814 7
2	0	2864
158

chain 2683 NA19650_chrY 52099742 + 12388522 12388550 HG002_chrY 62432599 + 12511308 12511336 8
28

chain 1446 NA19650_chrY 52099742 + 52097436 52097451 HG002_chrY 62432599 + 62432584 62432599 9
15