##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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27	60	0
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199	0	1
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44	0	5
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16	0	2
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487	0	3
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1309	5	4195
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881	0	1378
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19	0	10
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8	40	0
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15	0	5
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8	0	6
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4	5	0
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2	5	0
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163	46	41
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46	50	0
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356	4241	9672
1	2601	0
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1833	1	0
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773	6870	0
1190	38462	46676
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4119	1403	0
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34	0	5
1372	0	5
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335	0	15
1065	5	0
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4534	51052	34361
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13	0	5
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1	11015	4604
693	16596	5473
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57	0	5
297	369	0
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8	11467	3245
339	0	20
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6	8	0
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3712	0	2
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2286	0	1
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788	4	0
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24621	49	5071
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4871	1	0
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3414	46238	46210
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1351	0	25
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574	4	0
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4073	3377	3377
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48	1	0
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592	0	24
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652	39667	39663
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8628	8241	8240
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32	6	0
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11	35	0
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39	5	0
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11	13	0
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56	538673	598190
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608	6641	6611
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2	0	1760
9949	5	0
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754	0	2625
10534	10690	0
2907	10	0
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1754	3584	0
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10	0	15
8	38081	51399
2909	297873	380509
7422	15	0
691	5	0
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1342	3534	0
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1723	0	1
12855	5	0
706	0	15
1048	25	0
8333	0	1
8	29875	22625
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206	1	0
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375	7029	17675
10538	14175	0
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33	10	0
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694	0	15
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8340	5865	3
1399	5	0
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2270	5	0
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44	10	0
810	17724	0
543	15	0
4472	9515	20157
1146	0	5
6349	2411	2411
11662	9675	2412
101	8536	6119
844	1	0
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939	2	0
2472	0	2
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1009	0	5
68	10	0
207	0	15
4958

chain 353182863 NA18974_chrY 67226647 + 6232067 9996221 HG002_chrY 62432599 - 52562439 56521946 2
17919	0	4
43	1	0
13771	0	18
8	0	2
3145	0	4
8932	0	5
8239	6	0
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4055	1	0
1	11	0
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846	6	0
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117	1	0
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420	1	0
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3885	0	1
824	0	1
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623	13	101520
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51	0	1
42	2	0
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355	0	14
4699	0	1
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99	0	8
1691	0	5
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1205	2668	104118
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121	1	0
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325	0	1
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252	29	0
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311	0	1
311	1	0
292

chain 147116762 NA18974_chrY 67226647 + 23548178 25568229 HG002_chrY 62432599 - 35488234 39343231 3
86	11	11
9	0	1
65	32	0
41	1733	595
24506	0	10
4091	0	1
5948	0	1
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7000	0	2
3485	6	0
21350	1	0
18427	0	1
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60123	1	0
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67	4	0
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427	0	2
50	4	0
3377	1	0
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9994	0	16
20318	4	0
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16861	1	0
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40	8	0
15548	2	0
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14077	0	1
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271	0	2
34	4	0
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3486	2	0
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308	21689	0
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99	2138	2138
58	1	0
35	1	0
15812	0	21688
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2474	0	1
498	1	0
6620	4	0
7009	399593	2230820
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13	10	1
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280	0	4
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15925	0	2
2020

chain 64779940 NA18974_chrY 67226647 + 66450692 67224307 HG002_chrY 62432599 + 61604869 62432577 4
16	0	5
38	10	0
515	0	15
1228	0	10
530	3519	0
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172	0	3549
1039	0	10
1516	55014	74082
13	0	30
371	20	0
696	0	1
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349	0	15
28	4074	4069
6	0	10
517	10	0
315	20	0
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434	15	0
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5437	3560	0
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164	25	0
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1808	40	0
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1059	1	0
494	0	20
120	5112	1592
269	25	0
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1778	0	15
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389	1	0
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1020	1	0
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770	758	4270
2923	5	0
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21	3491	1
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1445	1	0
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214	15	0
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45	0	6
11	0	3
2374	1	0
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8119	0	5
407	1	0
1864	4	0
7215	0	1
3912	0	4
915	0	2
3143	14	0
8900	1	0
3762	0	33
14142	0	1
3703	1	0
4896	0	1
28220	0	1
52662	0	2
14553	1	0
2146	1	0
3356	3	0
17	2	0
2040	0	1
6977	0	4
68	0	4
6	2	0
37	0	4
134	6	0
716	3	0
4172	0	1
162	0	8
1373	4	0
475	0	12
3563	6	0
42	6	0
125	38	0
1489	1251	0
1129	0	3
4424	0	6
120	1	0
466	0	3
159	47	0
31	103	0
27	58	0
715	38	2
66	0	7
9	0	17
36	0	34
2	0	8
30	7	0
14	8	0
27	24	0
1	0	1
30	0	7
12	0	9
29	17	144
5	0	2
34	0	3
4	0	1
11	13	6
38	0	5
11	13	0
1	0	1
12	1	0
1	5	0
29	150	80
21	7	0
7	18	0
16	0	2
17	93	39
10	5	0
25	11	23
27	0	1
15	4	0
7	0	2
6	0	2
6	0	20
9	0	1
1	0	4
9	7	0
9	1	0
1	4	0
9	0	1
9	0	2
8	57	9
21	5	0
33	1	0
8	6	0
64	21	39
24	1	0
30	7	0
5	3	0
27	3	0
57	5	170
24	3	0
15	5	0
22	103	217
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
64	0	1
1	4	0
70	4	0
60	0	1
6	707	1
56	0	5
53

chain 58896682 NA18974_chrY 67226647 + 27558920 28181488 HG002_chrY 62432599 - 36085935 36708532 5
5235	0	2
270	0	1
1643	0	1
12206	0	2
6507	0	2
17081	0	1
16039	2	0
7744	0	1
5250	0	2
2718	0	2
27017	1	0
9163	1	0
2962	2	0
9159	0	1
15595	1	0
16168	1	0
4700	1	0
814	0	1
37563	0	2
2584	24	0
21776	0	2
20	1	0
526	14	0
7681	1	0
21480	1	0
130	3	0
10854	0	1
3982	0	2
4942	0	2
8344	0	1
5320	2	0
688	0	2
16450	0	4
3825	0	1
2411	1	0
4993	0	1
3048	4	0
28773	0	4
821	1	0
7676	0	1
2190	0	1
6780	0	2
5111	1	0
4423	1	0
21358	0	1
7973	0	1
12562	0	1
6970	0	6
7852	0	1
3315	0	1
125	0	4
19676	4	0
2531	2	0
7387	2	0
35917	1	0
21115	1	0
2197	1	0
7943	0	2
3264	0	1
471	1	0
17302	3	0
6170	0	20
59	0	16
30	2	0
63	12	0
13	4	0
4	12	0
100	0	12
3376	0	4
3343	0	15
11727	0	1
13136	0	3
7534	0	1
775	8	0
5340	2	0
1	4	0
84	0	14
1668	1	0
2474	0	4
41	0	2
887	0	2
740	0	6
4129	6	0
214	0	1
9090	3	0
818

chain 19043324 NA18974_chrY 67226647 + 27291512 27493535 HG002_chrY 62432599 - 35818513 36020550 6
33485	1	0
3720	1	0
12724	0	2
18680	4	0
20978	0	2
3093	1	0
17225	4	0
21122	1	0
10780	0	1
54	4	0
57	0	3
11	4	0
18275	0	21
3	0	2
9248	0	6
4882	0	1
5115	0	1
9863	2	0
2558	1	0
114	1	0
2327	1	0
7684

chain 8458466 NA18974_chrY 67226647 + 26442079 26532195 HG002_chrY 62432599 - 38399346 38509852 7
17723	0	10850
11996	0	4780
2804	0	4757
14711	0	1
1568	0	1
3817	0	8
1198	0	1
2015	3	0
3200	0	1
1162	2	0
1714	3	0
9259	0	10
4128	9	0
7853	0	1
3438	4	0
754	0	1
2755

chain 4735836 NA18974_chrY 67226647 + 27493536 27543716 HG002_chrY 62432599 - 36020550 36070733 8
20136	1	0
17361	0	1
12377	0	1
271	0	2
34

chain 4354820 NA18974_chrY 67226647 + 17892303 17938540 HG002_chrY 62432599 - 45214480 45260689 9
7914	0	2
5301	4	0
18650	6	0
2740	12	0
184	8	0
11418

chain 3742097 NA18974_chrY 67226647 + 20263124 20302784 HG002_chrY 62432599 - 42850342 42889998 10
8542	0	1
11422	4	0
11228	1	0
5797	2	0
881	0	2
1783

chain 2325016 NA18974_chrY 67226647 + 28232209 28256845 HG002_chrY 62432599 - 36761683 36786318 11
6913	1	0
17722

chain 1840424 NA18974_chrY 67226647 + 28181489 28201078 HG002_chrY 62432599 - 36708532 36728143 12
860	2	0
1159	0	1
3207	0	1
2015	0	1
1219	0	8
83	0	1
3722	0	2
1544	0	9
1464	0	1
4314

chain 1765396 NA18974_chrY 67226647 + 28203032 28232209 HG002_chrY 62432599 - 36742018 36761682 13
1446	0	1
6265	0	1
4084	2	0
119	2376	0
393	3	0
116	1	0
42	9	22
25	0	1
542	0	1
31	0	6
245	1	0
45	0	8
124	3	0
55	7507	350
790	1	0
4952

chain 1434888 NA18974_chrY 67226647 + 27543720 27558920 HG002_chrY 62432599 - 36070733 36085934 14
5213	1	0
8242	0	2
1744

chain 322611 NA18974_chrY 67226647 + 15647449 15650857 HG002_chrY 62432599 - 47507067 47510475 15
3408

chain 201400 NA18974_chrY 67226647 + 24857409 24859531 HG002_chrY 62432599 + 25646281 25648403 16
2122

chain 196391 NA18974_chrY 67226647 + 27289420 27291510 HG002_chrY 62432599 - 35816423 35818513 17
2090

chain 145594 NA18974_chrY 67226647 + 28201079 28202634 HG002_chrY 62432599 - 36728143 36729698 18
1555

chain 1346 NA18974_chrY 67226647 + 67225595 67225609 HG002_chrY 62432599 + 62432585 62432599 19
14

chain 1024 NA18974_chrY 67226647 + 67222093 67222105 HG002_chrY 62432599 + 62430961 62430973 20
12