##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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76	0	1
82	4	0
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69	0	5
121	0	9
77	12	0
308	0	16
9	0	26
657	0	15
217	18	0
56	3	0
322	0	1
2712	0	1
111	0	1
99	70	17
151	0	3
20	1	0
70	3	0
352	0	1
634	0	3
8263	0	1
9982	0	1
3938	0	2
1675	0	2
791	0	3
1065	0	1
257	1	0
211	10	0
878	4	0
23	0	14
16	0	14
7	0	76
17	4	0
25	25	0
164	2	0
198	2	0
74	0	4
25	0	29
12	0	2
6	0	2
25	2	0
17	0	2
6	2	0
10	75	0
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384	0	2
1024	1	0
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503	5	0
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3673	0	2
548	0	23
17	0	4
153	0	1
1082	0	2
38	4	0
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2174	16	0
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1924	4	0
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132	0	4
6	0	4
279	0	4
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82	8	0
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18	495	0
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55	1	0
123	39	39
1870	0	5
2794	1	0
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82	1	0
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4	0	2
8	0	1
34	5	0
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15	1	0
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941	0	1
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57	0	2
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59	0	1
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22	0	6
4	8	0
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7	15	0
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48	0	2
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37	0	2
6	5	0
42	2	358
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74	0	1
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71	2	0
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63	0	4
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4	0	1
22	465	110
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9	27	0
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1299	0	1
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290	0	1
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11	1	0
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11	9	16
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20	34	27
14	0	1
14	16	0
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8	38	10
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6	6	11
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9	14	16
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2	0	4
5	0	1
9	144	44
17	1	0
12	0	1
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2727	1	0
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3525	1	0
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920	0	1
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668	1	0
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53	4	0
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5	0	5
9	0	22
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721	1	0
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602	0	2
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18	10	0
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4639	0	1
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5864	0	3
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48	11	11
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4	4	0
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25	0	75
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747	0	20277
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7752	4	0
28	0	4
2420	4	0
212	4	0
55418	1	0
51762	0	1
7747	0	1
2909	0	6
17299	0	12
25548	0	451
1171	1	0
13700	4	0
31088	0	4
6664	0	1
7496	1	0
42384	0	1
22841	1	0
35127	0	1
4288	5	0
15676	2	0
28307	0	4
7381	3	0
22101	3	0
43830	1	0
21048	1	0
75312	0	1
7108	0	1
2688	0	1
64948	1	0
109	1	0
188	13	0
684	0	2
468	1	0
1150	0	1
230	1	0
225	11	0
47	1	0
160	0	4
151	1	0
205	1	0
5	1	0
118	0	1
50	0	3
253	2	0
342	0	1
161	1542	0
28320	0	1
2663	6	0
1373	0	2
14040	0	5
27090	6	0
2979	0	2
916	7	0
10917	0	3
19731	1	0
12477	1	0
58455	1	0
13000	1	0
77671	0	1
10237	1	0
36628	0	2
8270	0	2
1303	16	0
8379	0	1
75450	0	1
15854	46	0
40587	4	0
35111	1	0
18758	0	3
46539	4	0
11783	0	2
4376	14	0
33622	2	0
16977	8	0
330	15	0
10077	0	1
5714	1	0
27000	4	0
684	0	14
26	0	2
18590	1	0
325	0	1
2253	0	12
9565	1	0
24119	0	1
5322	1	0
64546	0	2
16399	4	0
6058	0	4
2054	0	2
4148	0	8
34378	29	0
11152	0	5
5	0	20
5502	0	2
351	2	0
910	1	0
856	0	1
1576	1	0
325	1	0
297	0	5
12961	3411	3411
12971	0	6
287	1	0
321	1	0
2439	1	0
910	2	0
355	0	2
5550	0	10
10165	0	1
59971	0	4
14492	1	0
251	4	0
48127	6	0
1746	8	0
1482	5	0
4460	4	0
2500	1	0
4916	0	1
3327	1	0
12534	3	0
22678	3	0
677	3	0
18962	4	0
7652	3	0
70201	2	0
5196	10	0
31182	0	1
15958	0	2
63	2	0
23	0	2
19905	4	0
1891	0	1
4787	1	0
5742	4	0
6537	42	0
80	0	46
165	2	0
21	2	0
2	21	0
21	23	0
23	19	0
39307	0	2
26052	0	1
2609	1	0
37	0	12
45020	0	2
18788	0	2
14142	1	0
12530	0	13
645	0	1
18001	0	4
18385	3	0
15	1	0
40427	0	1
15128	0	2
24365	0	4
381	0	8
3607	2	0
5884	0	2
15775	20	0
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17907	4	0
7962	2	0
21167	0	4
14590	0	1
161	3	0
66	0	2
3712	0	2
6100	43	0
22957	26	0
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17699	0	1
7477	2	0
5579	1	0
7963	1	0
8176	0	2
938	1	0
15731	1	0
873	0	2
426	1	0
12972	0	1
11135	0	6
2062	3	0
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10124	2	0
1722	0	4
3616	0	2
8303	0	1
8914	7	0
5257	4	0
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7404	0	1
9102	8	0
82	16	0
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6240	0	1
19314	0	6
10108	0	4
830	5	0
2482	4	0
3663	0	12
9819	0	1
10468	1	0
2449	0	4
238	4	0
2328	0	5
287	4	0
12418	0	8
2160	4	0
1137	0	4
4875	1	0
21227	16	0
36029	0	1
7211	1	0
14785	4	0
7487	1	0
26255	2	0
614	4	0
4980	0	1
28171	2	0
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1323	0	2
84	4	0
34548	1	0
7235	1	0
6259	0	5
5445	0	1
24006	0	1
12032	0	2
7835	1	0
8887	1	0
157	1	0
3792	2	0
24366	0	2
160	12	0
926	2	0
6580	0	14
8921	1	0
24621	0	1
13	0	2
27764	7	0
2536	4	0
21818	0	1
26131	20	0
12628	8	0
64	12	0
7	4	0
7909	1	0
13630	2	0
263	2	0
11	0	2
1276	8	0
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15208	6	0
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5646	1	0
3880	0	12
2839	4	0
5816	0	1
9698	0	1
4816	0	1
2976	0	1
930	0	6
10136	1	0
30107	3	0
14	0	1
3757	0	2
17	1	0
4	1	0
5379	1	0
6458	0	3
1974	1	0
3730	2	0
24	0	2
19522	0	4
3698	1	0
3692	0	2
10717	6	0
67	4	0
7	2	0
2287	0	1
2757	1	0
5219	2	0
2	24	0
30404	0	1
10856	2	0
7763	0	1
5700	0	4
10709	12	0
23796	4	0
18	0	8
7481	4	0
3789	4	0
2029	1	0
2577	3	0
7419	1	0
22267	1	0
1327	0	2
13779	0	2
21763	1	0
14267	4	0
9590	0	1
15124	0	1
4014	0	3
22472	0	2
377	1	0
30897	0	1
8435	2	0
6385	0	1
2341	0	4
530	2	0
7744	0	16
13	3	0
1	0	3
110	0	4
11196	0	2
14340	0	1
13385	4	0
2478	8	0
2459	6	0
16210	4	0
5303	2	0
18468	0	1
2205	0	2
2485	0	4
596	6	0
4119	1	0
7185	4	0
4	0	1
1158	2	0
9433	1	0
61	1	0
14830	0	1
22893	2	0
8001	0	1
379	0	4
864	0	2
44118	0	2
25405	4	0
14104	4	0
20451	1	0
10058	0	1
21001	21	0
6088	1	0
6347	0	2
19892	0	23
5695	0	2
5355	0	4
27912	0	8
19907	2	0
25	0	2
4727	8	0
3415	1	0
13256	12	0
44229	4	0
12531	4	0
1364	1	0
7243	1	0
7123	0	1
13256	1	0
18940	0	1
7294	12	0
18204	0	1
107	0	8
3650	1	0
1479	0	1
18462	2	0
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13058	10	0
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7929	8	0
4339	2	0
12228	0	1
2400	0	1
22673	0	4
29079	4	0
11642	0	2
25498	2	0
73	19	0
1631	1	0
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5935	0	1
4710	0	1
17517	1	0
773	0	2
749	0	2
1192	0	1
16	0	3
20	0	4
7182	3	0
3493	2	0
24834	0	1
24199	2	0
14	0	1
52	3	0
1981	1	0
17313	0	24
21	0	2
173	2	0
24366	1	0
7737	0	4
11612	0	2
17528	1	0
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32	0	2
10378	2	0
12244	5	0
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6732	1	0
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13431	0	8
5159	12	0
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961	2	0
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88	4	0
616	0	4
10335	0	3
13784	0	1
28	0	2
2	0	6
1675	0	2
4	0	1
52	0	8
41191	2	0
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7865	0	4
430	0	8
9465	0	1
65830	0	6
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6696	0	3
907	1	0
127	0	1
17172	8	0
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5481	1	0
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26159	0	4
3011	0	1
1402	1	0
6698	2	0
11910	0	3
5649	1	0
8709	1	0
1234	0	4
10876	1	0
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9919	2	0
1845	0	1
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2676	1	0
2767	2	0
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75237	0	1
1176	1	0
1336	1	0
9544	8	0
52	0	12
1378	1	0
574	4	0
2252	1	0
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2785	0	3
70	0	3
774	0	1
3306	3372	3372
8426	1	0
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1468	0	4
44	1	0
2520	0	2
7050	25	0
6	4	0
10120	15	0
59	3	0
47	4	0
1	2	0
39072	4	0
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6	25	0
1943	0	1
5064	2	0
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12	0	1
1	0	1
3045	1	0
942	2	0
2317	0	1
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3697	4	0
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3772	1	0
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2857	0	4
13631	2	0
592	1	0
1483	8	0
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5	1	0
3	6	0
6718	0	1
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1720	0	1
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38393	1	0
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6711	0	1
4399	0	12
12072	1	0
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5828	1	0
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5329	1	0
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33724	4	0
4	2	0
53	0	2
10944	0	5
49	0	5
6394	0	2
30181	1	0
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840	1	0
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1781	1	0
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14738	4	0
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3321	2	0
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1508	1	0
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4450	1	0
6972	0	1
9146	0	4
8099	2	0
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107	2	0
26	0	2
3534	0	1
207	1	0
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6906	1	0
27	21	0
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650	0	1
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41	0	6
726	1	0
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4032	6	0
2	2	0
5630	4	0
2927	4	0
35539	4	0
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18	4	11
15861	0	2
23	0	2
15409	1	0
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7981	0	3
2119	1	0
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990	0	2
75208	3	0
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18193	8	0
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13	1	0
13534	0	4
7269	1	0
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1856	4	0
579	0	9
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42	6	0
560	0	16
23288	1	0
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4380	4	0
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35	0	4
20	4	0
36	4	0
1587	0	1
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11623	1	0
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12464	10	0
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275	1	0
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32	2	0
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3346	1	0
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7227	14	0
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6418	0	1
482	0	1
33056	0	1
12964	1	0
31924	1	0
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1960	0	1
2441	1	0
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560	0	2
6470	0	3
64732	1	0
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1340	0	2
1419	3	0
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874	0	1
6580	0	1
2739	2	0
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176	10	0
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5795	0	1129
3436	0	125
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20986	69912	0
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12600	2376	0
363	125	0
71	1	0
31	4	0
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144	1	0
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84	1	0
592	0	125
49	0	4
670	1	0
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561	0	1
13	0	1
11	0	4
43	0	1
81	0	4
43	0	1
164	0	2
24	0	1
185	48603	6037
1197	0	498
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4057	0	250
15778	0	250
176	0	1
192	0	39
5	0	85
239	0	1
324	34492	29505
43	0	125
63	0	1
98	1	0
244	0	1
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164	0	2
83	4	0
3	0	3
158	2	0
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105	0	2
80	10	9
283	2	0
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164	0	2
603	0	123
307	0	124
292	1	0
102	0	5
2	5	0
16	3	1001
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293	2	0
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225	1496	0
330	0	124
28	0	1
239	0	125
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280	0	2
269	0	1
27	0	249
137	0	7
6	7	0
15	0	1
286	0	2
82	1	0
518	1	0
195	498	0
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984	0	625
47	0	999
16	0	125
123	0	125
78	0	125
145	875	0
26	1124	0
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909	0	500
4515	2624	0
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37	250	0
16324	1000	0
71	25771	14896
41	125	0
1044	1	0
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411	0	1
254	0	125
560	0	1
332	0	7
3	7	0
240	124	0
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1193	0	1
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63667	2	0
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62457	0	1
304	0	4
36	4	0
4645	0	10
2121	32294	32299
2096	2	0
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32	2	0
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5565	4	0
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72462	23544	0
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349	1	0
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11	77	0
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386	42095	2085
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76	1	0
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140	0	1
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59	0	13
118	0	3
55	4	0
161	1	0
38	10	0
10	0	68
7	0	4
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23	466	6295
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121	2	0
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50	4600	2764
121	12	0
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210	6	0
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75	0	8
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107	75522	109875
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63	5297918	5058765
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14	5079	1599
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782	1	0
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687	6	0
106	6	0
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75	1	0
52	8	26
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14	8	24
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15	1	0
3	0	5
24	1	0
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11	117	70
23	17	0
13	35	18
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12	0	1
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17	10	0
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25	59	109
9	0	1
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24	0	2
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17	11	91
31	0	5
4	20	0
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36	26	30
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11	0	10
5	0	141
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12	0	1
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15	19	262
12	0	1
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68	4	0
60	0	1
6	431	85
30	1	0
2	4	0
15

chain 11270666 NA12886_chrY 51620950 + 24016297 24167382 HG002_chrY 62432599 - 38399346 38539790 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
105	0	1
53	0	4
552	0	2381
638	1	0
67	4	0
123	1	0
13	4	0
207	6	0
429	1	0
145	1	0
20	1	0
8	15	0
46	0	1
62	0	1
60	0	4
498	0	2
210	1	0
435	29932	6092
7	1	0
2251	0	1
3446	1	0
864	1	0
1457	0	11
1558	1	0
3724	1	0
3316	5	0
3200	1	0
1163	0	2
860	0	2
9914	1	0
195	0	8
4130	12	0
740	0	1
912	2	0
2516	0	1
1668	1	0
2015	0	1
3438	12	0
33123	0	3
227	1	0
95

chain 3058185 NA12886_chrY 51620950 + 21845794 21878087 HG002_chrY 62432599 - 40507615 40539913 3
6287	0	1
5505	0	4
20501

chain 427764 NA12886_chrY 51620950 + 23131869 23136380 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 322611 NA12886_chrY 51620950 + 14739681 14743089 HG002_chrY 62432599 - 47507067 47510475 5
3408

chain 6804 NA12886_chrY 51620950 + 24175521 24175681 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158

chain 2683 NA12886_chrY 51620950 + 12353270 12353298 HG002_chrY 62432599 + 12511308 12511336 7
28