##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2151668484 HG04204_chrY 56594536 + 3690 56591312 HG002_chrY 62432599 + 2 62432577 1
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738	52	0
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39	24	0
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696	0	1
588	0	1
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2424	0	4
2358	90	0
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2100	0	4
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1484	0	13
1400	0	1
1719	16	18
216	0	29
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27	27	0
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1519	1	0
485	1	0
39	6	13
60	8	0
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5	4	0
1192	0	4
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2753	4	0
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1443	4	0
90	0	2
127	13	6
6	1	0
119	111	649
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93	0	4
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7	0	8
160	0	4
79	8	0
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434	0	9
3	0	706
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2091	1	0
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1133	1	0
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7	28	0
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2464	2	0
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480	1	0
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1643	7	0
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1436	68	0
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1333	0	830
4	1	0
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350	0	2
868	0	4
1473	3	0
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91	104	0
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4667	1	0
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3	4	0
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2859	1	0
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4124	2	0
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74	0	1
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43	0	8
4	4	0
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58	4	0
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53	0	3
1269	1	0
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27	1	0
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3245	4	0
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61	1	0
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45	0	4
37	0	2
2495	5	0
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39	0	8
3306	0	1
4575	0	590
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1098	2	0
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9	5	29
707	2	0
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143	0	1
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7	0	4
177	0	1
579	4	0
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1247	1	0
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4717	0	2
865	2	0
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145	0	14
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4	11	37
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7	16	6
57	0	2
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6	0	1
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9	0	1
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9	27	17
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56	0	2
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4	60	0
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27	0	1
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27	46	24
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14	0	1
9	0	1
553	0	6
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288	0	1
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6	0	1
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13	3	0
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234	784	772
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52	0	1
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11	0	8
8	130	10
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67	0	1
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21	67	4
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39	1	0
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11	1	0
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1	0	1
13	196	0
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6451	2	0
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3646	5112	2265
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8	1	0
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6	171	403
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382	111725	2853
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6	0	2
8220	1	0
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9553	4	0
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886	1	3
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1400	0	1
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1673	1	0
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364	0	1
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22	0	2
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43	2	0
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5864	0	3
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16329	0	10004
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2479	2	0
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6450	1	0
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6954	1	0
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86	8	0
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18	21	27
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9268	1	0
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67	5	0
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18	2	0
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134	0	3
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9875	1	0
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6340	1	0
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64	0	3
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23	1	5
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28	0	6
485	0	1
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2928	1	0
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485	0	1
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838	1	0
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14	0	4
16	1	0
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10	0	81155
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495	6	0
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29	10	0
839	0	1
1505	3	0
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4213	1	0
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1689	2	0
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838	1	0
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783	0	30
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257	11	0
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356	1	0
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96	0	8
4598	18	0
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4030	0	20277
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6511	1	0
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830	1	0
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1303	1	0
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6982	1	0
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26	6	0
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2981	0	20314
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2574	6	0
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112	0	2
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1716	2	0
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7668	2668	104118
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43	0	121774
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14	0	4
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74	0	8
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42872	600766	311619
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382	0	1
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1777	25	0
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14513	3	0
7882	4	0
19601	8	0
422	8	0
949	0	4
3719	1	0
25803	16	0
6678	0	4
8211	1	0
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1951	0	3
4432	0	4
2012	4	0
1902	0	4
17	0	4
13969	0	1
2446	0	21
968	0	15
923	4	0
516	4	0
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26712	1	0
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303	0	1
16014	8	0
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122	0	4
28619	15	0
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41565	1	0
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6588	0	1
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7969	4	0
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28	0	2
2518	4	0
116	8	0
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2	0	2
11199	0	24
32404	1	0
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7747	0	1
6554	1	0
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14746	1	0
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6664	0	1
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1485	1	0
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2214	1	0
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19964	2	0
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7381	0	25
37429	1	0
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7108	0	1
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5157	1	0
109	1	0
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684	0	2
468	1	0
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230	1	0
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47	1	0
160	0	4
151	1	0
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5	1	0
118	0	1
50	0	3
253	2	0
342	0	1
161	1542	0
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21820	0	1
14041	0	5
5	0	5
27080	3	0
2979	0	2
916	0	17
10900	3	0
32211	1	0
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4098	0	1
25768	1	0
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94	0	1
54	0	2
10	2	3946
25	0	1
3	7	0
4	0	6
18	0	1
12	1	0
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77	0	2
139	1	0
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8270	0	2
1303	8	0
49	0	4
83777	0	1
15854	46	0
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63908	1	0
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63	12	0
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50591	11	0
330	16	0
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5714	1	0
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684	0	18
22	0	2
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5967	0	4
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351	2	0
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325	1	0
297	0	4
1383	4	0
49	4	0
11530	3411	3411
11574	0	8
1389	0	6
287	2	0
321	1	0
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355	0	2
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12	7	0
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561	0	1
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6616	3	0
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65	0	2
27	0	2
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35	0	8
45024	0	2
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640	1	0
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288	4	0
93	0	4
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161	4	0
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114	12	0
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52	8	0
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84	6	0
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5445	0	1
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7835	1	0
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157	1	0
3792	6	0
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64	4	0
862	1	0
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12	0	2
36	0	4
27724	7	0
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64	12	0
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7909	1	0
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6723	1	0
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139	1	0
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18	1	0
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67	2	0
7	2	0
2287	0	1
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72	2	0
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17	0	4
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4715	1	0
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70	4	0
4	0	1
64	0	12
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13	0	5
7447	1	0
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379	2	0
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25	0	2
4727	8	0
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439	0	4
162	12	0
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1079	1	0
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73	19	0
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14	0	1
52	3	0
1981	2	0
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17	1	0
6447	0	4
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88	20	0
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52	4	2
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31369	1	0
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34	0	4
9423	0	1
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907	1	0
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2676	1	0
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53	0	8
1952	4	0
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4078	3371	3372
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1	0	1
1496	0	4
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33	0	2
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44	8	0
4	8	0
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648	39686	39663
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8095	2	0
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21	5	13
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42	6	0
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686	1	0
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2	0	5
104	0	872
702	8273	0
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324	28134	29505
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247	6368	3869
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142	677	1426
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32152	70942	326
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386	42002	2085
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217	0	1
111	0	3
22	2	0
17	0	4
49	0	1
42	10	0
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54	193	0
11	0	19
74	3	0
112	0	1
134	7	0
135	2	0
48	1	0
5	0	2
7	3	0
267	0	12
79	3	0
266	1	0
164	3	0
63	6	0
16	4	0
206	2	0
14	1	0
188	0	1
40	0	4
153	0	4
17	1	0
262	2	0
100	0	1
29	1	0
6	2	0
117	0	1
170	0	1
28	0	5
57	44	0
163	0	1
177	0	2
22	20	0
170	1	0
129	0	7
15	0	14
103	0	1
42	335	0
10	3	0
58	4	0
129	0	1502
76	1	0
88	0	17
140	0	1
83	0	1
209	5	0
88	17	0
5	0	15
23	0	1
26	0	1
82	12	0
79	329	0
27	3	0
31	0	2
32	3	0
59	0	13
118	0	3
55	4	0
161	1	0
38	10	0
10	0	68
7	0	4
12	0	2
98	1	0
43	0	11
3	16	0
63	4	0
249	0	1
53	0	4
20	0	60
130	0	2
8	1	0
295	1	0
188	0	2
295	0	4
72	0	22
46	0	4
93	0	1
253	0	4
38	1	0
27	0	3
12	107	0
26	0	6
32	0	2
91	4	0
27	3	0
176	3	0
53	1	0
26	0	4
60	0	5
57	0	6
103	0	1
105	0	1
17	2	0
92	0	1
51	1	0
310	12	0
138	1	0
109	0	1
86	0	6
267	0	3
73	0	1
550	0	4
46	6	0
609	1	0
46	1	0
146	1	0
18	1	0
44	4	0
71	1	0
73	0	4
577	0	2
141	0	1
240	1	0
15	0	1
148	0	2
211	1	0
25	3	0
116	2	0
76	0	1
104	11	0
116	0	4
3	3	0
139	0	1
109	0	1
116	0	1
188	0	5
213	1	0
192	0	1
37	0	1
10	0	1
37	0	1
50	1	0
5	0	2
178	0	3
120	2	0
98	0	1
251	2	0
28	0	1
57	1	0
23	466	6295
120	0	1
262	0	1
214	0	4
221	0	1
130	4	0
213	4	0
43	1	0
105	0	1
2	2	0
29	0	1
15	0	2
96	1	0
127	1056	0
244	0	1
60	0	7
439	0	1
41	1	0
235	11	0
7	0	1
690	0	1
254	0	1
16	36	0
97	1	0
234	0	2
27	0	1
33	4	0
1	0	5
121	2	0
25	1	0
73	0	1
50	4600	2764
121	12	0
77	12	0
117	4	0
176	0	1
95	8	0
91	0	3
210	6	0
2	0	8
75	0	8
117	0	15
117	1	0
31	0	3
197	0	1
107	75522	109875
386	0	3
114	0	2
53	32	0
4	0	28
67	0	1
218	0	7
25	2	0
72	0	2
50	0	3
53	1	0
28	9	0
20	5	0
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69	1	0
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104	14	0
315	1	0
48	0	2
5	0	1
9	12	0
72	0	1
131	0	2
61	0	6
29	0	152
200	0	1
40	1	0
288	4	0
158	1	0
5	3	0
69	0	1
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69	2	0
120	0	3
15	1	0
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94	0	2
113	0	8513
27908	4	0
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7415	1	0
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4976	0	2
101	1	0
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4059	0	4
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34	4	0
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6	0	3
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3330	0	4
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614	0	1
17084	31055276	37247231
3148	3504	0
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3574	5	0
1809	12349	1712
71	25	0
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13729	12588	2913
341	0	3
615	6425	11256
2987	0	1
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79	2	0
1111	0	2
174	0	4835
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5	0	2
600	1	0
690	2419	0
3861	4836	4836
5659	31008	41568
2711	5	0
229	0	15
111	1	0
156	0	15
499	5	0
333	10	0
87	1	0
706	15	0
1716	1	0
640	0	15
349	0	20
919	0	5
1340	48551	172223
6886	10	0
2952	0	26846
35158	0	5
20	2071	16205
3367	1	0
3534	0	1
3534	1	0
6240	0	14139
9022	5	0
28351	25	0
1881	1	0
8740	0	25
1901	3534	0
1469	15	0
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3370	15	0
150	25	0
18673	1	0
494	0	20
74	0	25
14	5079	1599
1328	1	0
494	0	20
66	0	40
6176	3495	0
3748	0	1
527	20	0
47	40	0
29907	20	0
28076	0	15
1129	3484	0
129	5	0
2606	0	5
3088	0	15
24	15	0
371	5	0
3493	5	0
909	0	3498
552	30	0
5528	5	0
3475	5	0
32	0	3508
1878	0	1
12109	5	0
7804	15	0
18741	0	2395
3769	5	0
18950	2	0
16252	0	2
2444	0	2
4919	11933	3463
24195	0	4
149	0	4
3329	0	1
5649	2	0
26	1	0
5880	0	2
2765	1	0
10992	0	3
16383	0	4
48301	0	10
2433	3	0
21	0	36
5539	0	2
4326	8	0
4255	1	0
3416	0	4
1517	4	0
861	1	0
18648	19	0
1776	0	3
1309	1	0
724	0	1
1972	4	0
1725	5	0
866	1	0
6335	1	0
9791	0	1
2723	2	0
45	0	6
1324	0	1
6011	0	1
8120	0	5
407	1	0
1864	10	0
7215	0	1
3912	0	4
915	0	2
3143	14	0
8900	1	0
658	32	0
3104	0	33
16288	0	3
6451	0	1
343	0	2
4828	0	1
6	0	3
530	2	0
2613	1	0
1095	0	4
12695	0	1
6099	0	1
73	12	0
272	0	2
2724	2	0
4392	0	1
9625	1	0
7862	1	0
13514	4	0
253	1	0
73	0	1
13870	0	2
11269	1	0
168	0	1
782	1	0
7835	0	2
15	2	0
9100	2	0
5226	1	0
14200	6	0
106	6	0
116	7	0
1	0	1
75	1	0
30	1	0
13	0	1
3	0	1
5	1	12
43	0	1
38	0	2
20	8	0
91	0	5
6	0	1
5	0	1
28	1	0
2	4	0
25	77	13
19	69	4
14	75	17
30	0	2
2	0	6
4	0	1
18	1	0
2	5	0
18	10	0
7	32	22
91	4	0
7	29	17
52	151	8
6	2	0
16	35	0
1	0	5
17	7	91
39	36	21
54	14	5
9	0	30
26	0	18
1	3	0
21	3	0
10	19	580
24	0	1
1	0	37
35	4	0
70	4	0
4	0	6
7	0	5
38	0	1
6	469	1
43	0	2
11	0	5
53

chain 10913538 HG04204_chrY 56594536 + 24547009 24684031 HG002_chrY 62432599 - 38401468 38539790 2
63	0	1
35	0	1
15477	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
715	0	4757
650	20341	6035
7	1	0
2251	0	1
4310	1	0
1457	0	11
1558	1	0
3724	1	0
967	1	0
2349	4	0
3200	0	1
2024	0	1
9915	1	0
4333	15	0
740	0	1
912	2	0
2516	0	1
1668	14	0
84	0	6
1925	0	1
3430	0	8
754	0	1
32368	0	7
223	1	0
95

chain 3742417 HG04204_chrY 56594536 + 19816223 19855902 HG002_chrY 62432599 - 42850342 42889998 3
15515	1	0
4450	4	0
6526	16	0
10499	2	0
2666

chain 427764 HG04204_chrY 56594536 + 23660478 23664989 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 322611 HG04204_chrY 56594536 + 15195259 15198667 HG002_chrY 62432599 - 47507067 47510475 5
3408

chain 6804 HG04204_chrY 56594536 + 24692170 24692330 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158

chain 2683 HG04204_chrY 56594536 + 12812870 12812898 HG002_chrY 62432599 + 12511308 12511336 7
28

chain 1346 HG04204_chrY 56594536 + 56592438 56592452 HG002_chrY 62432599 + 62432585 62432599 8
14