##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2345152637 HG04187_chrY 47534246 + 0 47531468 HG002_chrY 62432599 + 88 62432577 1
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2975	0	4
672	14	0
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45	4	0
17	8	0
13	2	0
54	8	4
23	14	0
2	16	0
690	789	0
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60	0	1
239	0	1
153	1	0
362	2	0
6467	0	4
5122	0	2
3063	4	0
1110	0	1
1082	0	259
3048	0	8
86	0	2
943	0	2
1184	0	1
365	5	0
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2992	1	0
1869	0	4
37	0	10
484	0	1
2821	0	1
4575	0	590
295	0	590
2973	1	0
3439	0	4
366	2	0
780	135	0
187	0	4
446	1	0
483	0	1
4057	2	0
268	0	1
8913	0	3
1566	1	0
1307	0	4
26	0	20
37	5	0
7	0	5
30	0	10
9	5	29
707	2	0
1777	0	2
166	1	0
6478	2	0
2	0	4
292	0	4
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273	0	1
538	0	1
2132	1	0
109	4	0
46	4	0
355	0	4
1247	1	0
275	106	0
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635	4	0
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38	4	0
335	0	4
1560	0	4
96	12	0
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10	0	36
99	0	2
111	0	72
101	1	0
2	1	0
35	1	0
407	108	0
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24	36	0
9	327	2
84	180	0
188	108	0
88	0	504
33	0	1
4	0	1
69	1	0
699	5	0
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146	4	0
1586	0	1
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1708	0	2
824	2	0
443	0	1
548	235	0
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17	0	12
319	0	6
114	6	0
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94	4	0
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133	0	26
113	116	0
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1214	49	0
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305	0	1
16	13	0
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704	0	4
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61	0	4
489	2	0
47	0	1
3	1	0
169	0	26
89	0	2
897	4	0
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28	0	60
78	0	25
1	5	0
11	10	0
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41	0	5
368	1	0
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81	20	0
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1	4	0
615	0	1
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1445	4	0
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27	2	0
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653	4	0
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1247	5	0
234	1158	1167
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21	0	4
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794	0	3
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42	0	7
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6	1	0
92	4	0
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74	0	2
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98	1	0
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3	1	0
5	0	1
3	3	0
31	3	0
12	0	8
8	149	10
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14	1	3
24	30	22
16	0	6
25	181	0
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22	35	0
9	293	0
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152	3	16
53	0	1
45	53	0
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21	68	4
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1	0	1
48	10	0
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8	0	1
4	139	0
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9	0	2
1	0	1
9	0	1
3	153	0
21	1	0
124	0	3
29	167	0
76	0	4
24	19	71
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6	0	3
12	0	4
6	0	6
17	4	0
12	0	1
6	0	7
9	0	1
13	0	24
1	0	1
8	0	1
3	0	2
6	360	29
168	0	4
266	1	0
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244	5	0
2341	1	0
1691	0	208
1029	0	1
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26	20	33
5	0	3
211	0	62
8	19	0
33	0	19
9	24	0
11	0	5
3	4	0
37	45	21
16	18	0
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3	78	0
8	2	21
8	27	0
1775	29	0
28	1	0
63	34	0
94	0	1
36	1	0
16	39	2
830	2	0
2	83	0
169	1	0
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24	0	10
8	0	1
13	0	10
13	0	5
15	0	10
577	3	0
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2314	2	0
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967	30	0
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60	2	0
4	0	6
2	0	2
17	0	20
8	2	0
322	0	1
1782	0	8
8	4	0
870	1	0
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481	0	4
34	0	20
1023	3	0
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439	0	1
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358	0	4
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1057	0	4
75	12	0
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92	0	140
4	0	76
6	0	8
6	0	12
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92	4	0
80	0	8
7463	4	0
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11	12	0
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1397	0	1
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601	0	2
1501	0	40
401	0	3
1166	7	0
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963	0	1
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448	2	0
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842	56	0
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348	0	4
2	0	4
6451	2	0
1033	0	1
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5551	0	1
105	0	5
2146	2	0
959	1	0
632	0	1
1974	0	4
173	0	8
738	1	0
498	1	0
938	353	0
142	1	0
665	0	3
18	3	0
1103	0	2
14	3	0
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60	0	60
21	15	29
991	0	1
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408	4	0
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225	1	0
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30	465	0
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1	0	1
743	3	0
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141	0	5
193	0	24
16	0	5
102	5	0
1212	0	44
2826	0	216
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690	0	57
1539	11	0
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30	570	0
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24	11	0
145	1161	285
33	22	79
169	11	0
1110	0	3
442	0	1
179	0	5
1107	0	1
260	0	1
319	1	0
2240	429	87
391	0	2
2957	0	117
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10	0	159
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296	0	3
580	0	1
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54	237	9
29	54	320
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45	0	8
20	4	0
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35	0	4
28	4	0
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174	1	0
727	30	0
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1365	5	0
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75	1	0
68	0	1
131	0	1
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3408	11230	0
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742	0	1
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18	0	4
24	0	2
152	0	3
1715	1	0
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141	0	1
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1027	0	6
43	1	0
61	0	3
390	0	18
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176	86	0
574	140	0
66	4	100
118	2	0
46	0	72
614	1	0
3047	0	12
567	0	9
531	7	0
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563	0	36
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93	63	0
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9212	1	0
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167	0	3
43	1	0
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5	39	0
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3	11	0
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84	18	0
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5868	0	4
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2625	4	0
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1040	210	0
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7	0	4
9	6	0
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17	0	4
1	0	4
35	13	11
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685	0	1
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299	63	0
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4	0	4
3236	0	1
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5	0	17
54	41	0
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62	0	4
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146	3	2
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2285	20	54
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1642	93290	9289
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2721	1	0
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21	109471	131629
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4072	3373	3373
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2809	0	10
2764	15	0
5429	15	0
732	20	0
2034	0	15
700	0	20
2245	0	1
2517	0	10
206	1	0
488	20	0
1668	0	15
346	20	0
715	10	0
254	0	5
1409	15	0
320	5	0
4	0	5
1016	5	0
1785	15	0
2727	0	5
2414	8	8
357	0	5
2729	10	0
5	0	5
26	0	5
9	0	5507
47	1	0
2681	15	0
1000	0	5
1758	0	10
3759	5	0
1335	16968	19707
1038	0	10
3159	0	10
1339	5	0
13	0	10
544	5492	4
2590	0	5
7976	24244	24284
6847	5	0
1700	0	15
444	4	0
7443	17405399	33707486
12577	2413	0
8039	0	2414
158	7	0
700	0	2
843	0	2413
832	2	0
30	0	7
450	1	0
2172	0	2
698	14469	0
11807	2	3521
154	0	15
1282	0	10603
11972	0	17673
16435	0	14139
5649	15	0
2235	1	0
4819	0	15
2414	5	0
946	10	0
86	15	0
414	0	5
156	45	0
122	0	20
583	0	5
150	1	0
432	0	15
566	5	0
940	10	0
88	15	0
402	0	10
168	45	0
122	0	20
103	1	0
2723	25	0
356	5	0
13741	0	1
1948	1	0
9307	0	7080
13414	15	0
164	25	0
356	0	10
1280	40	0
1670	0	15
1808	40	0
1686	0	15
1233	1	0
494	0	20
74	0	25
21	562	28596
7171	0	5
13915	0	5
1596	5	0
271	2	0
590	5	0
23	155	0
1022	0	10
442	15	0
1980	20	3559
33	60	0
34	0	20
27	0	40
32	6	0
1	0	16
22	0	15
29	0	3609
13249	1	0
483	5	0
2199	0	15
24	15	0
777	1	0
334	0	15
134	5	0
3513	0	3498
552	30	0
2030	5	0
3498	5	0
6204	32015	10994
3040	1	0
757	0	5
3	5	0
32709	5	0
37648	0	2
32577	4	0
13294	1	0
1748	0	4
2763	0	4
3915	0	4
7069	0	3
16380	3	23
44712	1	0
3573	0	10
12357	2	0
928	1	0
3327	1	0
3416	0	4
1517	4	0
21285	0	3
32834	0	2
10395	2	0
11128	0	12
16714	0	33
11481	1	0
4807	0	3
6451	0	1
343	0	2
4828	0	1
6	0	3
530	2	0
2613	1	0
1095	0	4
12695	0	1
6099	0	1
73	13	0
272	0	2
2724	3	0
4392	0	1
9625	1	0
21629	1	0
73	0	1
10647	1	0
1366	0	1
1509	2	0
347	0	2
256	2	0
11013	1	0
951	1	0
7835	0	1
16	2	0
9100	2	0
5226	1	0
14200	6	0
42	6	0
6	6	0
58	6	0
116	7	0
1	0	1
75	1	0
52	0	10
1	0	2
43	0	1
10	0	1
15	2	0
3	0	1
10	4	0
20	8	0
30	0	1
4	0	1
1	2	0
10	9	3
52	0	1
5	0	1
13	11	36
12	0	2
24	76	18
43	0	1
3	0	2
12	0	1
32	0	1
5	9	0
15	60	21
38	0	1
2	6	0
17	0	1
6	60	43
19	6	0
9	92	35
19	58	12
17	0	14
10	0	12
39	0	1
30	10	19
15	3	0
1	0	4
59	3	0
10	0	21
17	1	0
19	23	17
21	3	0
59	17	0
2	0	2
9	3	0
9	25	1
27	0	3
15	0	19
1	0	5
21	3	0
12	16	232
13	0	32
54	0	1
2	2	0
29	4	0
66	0	1
1	0	37
35	4	0
70	4	0
31	1476	37
56	0	5
53

chain 10914479 HG04187_chrY 47534246 + 25025444 25162448 HG002_chrY 62432599 - 38401468 38539790 2
63	0	1
35	0	1
14862	0	1
614	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
6999	1	0
715	0	4757
650	20340	6035
7	1	0
2251	0	1
4310	1	0
1457	0	11
1558	1	0
3724	1	0
3316	5	0
4363	0	2
860	0	1
9915	1	0
195	0	8
4130	12	0
1653	4	0
2516	0	1
1668	1	0
2015	0	1
3430	0	8
754	0	1
32368	0	8
222	1	0
95

chain 427764 HG04187_chrY 47534246 + 24138898 24143409 HG002_chrY 62432599 - 39338719 39343231 3
2490	0	1
2021

chain 326927 HG04187_chrY 47534246 + 19696285 19699743 HG002_chrY 62432599 - 43575590 43579047 4
819	1	0
2638

chain 322611 HG04187_chrY 47534246 + 15764578 15767986 HG002_chrY 62432599 - 47507067 47510475 5
3408

chain 6804 HG04187_chrY 47534246 + 25170587 25170747 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158