##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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15	2	0
7	0	4
58	84	0
9	28	0
1232	1	0
291	0	2
3215	0	2
2995	134	0
859	1	0
559	0	1
172	0	1
3712	0	1
864	1	0
570	10	0
925	3	0
3574	0	4
1017	0	50
919	0	3
2851	1	0
814	3	0
443	1	0
728	0	6
158	0	3
13	17	74
31	0	1
658	0	1
354	0	3
336	1	0
1721	0	52
244	26	0
629	0	405
19	0	404
1981	42	0
25	0	8
25	0	1
4	0	1
10	2	0
1742	4	0
1385	0	4
738	64	0
11	4	0
3	4	0
2	2	0
39	24	0
13	1	0
3	1	0
1285	0	1
571	1	0
495	0	1
2424	0	4
2358	90	0
350	45	0
94	45	0
12	90	0
276	45	0
84	135	0
168	270	0
45	45	0
18	45	0
27	90	0
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45	135	0
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2100	0	4
358	8	0
1015	7	0
343	0	3
18	0	12
66	0	4
277	28	0
18	13	3
425	0	4
14	0	4
70	4	0
62	24	0
45	0	4
84	12	0
194	0	4
187	0	4
18	0	8
29	4	0
11	4	0
100	20	0
14	8	0
7	20	0
54	0	4
8	0	19
90	4	0
16	12	0
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16	0	1
2614	0	4
844	0	2
1400	0	1
1719	16	18
282	0	2
27	54	0
1	6	0
93	6	0
27	0	2
67	29	0
8	0	2
121	27	0
226	0	1
1416	1	0
15	0	3
3380	0	2
1057	248	0
246	246	0
1450	4	0
1740	2	0
11	1	0
81	0	816
11	0	4
199	4	0
45	2	0
1028	20	0
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20	0	4
28	0	4
23	0	4
54	0	16
36	12	0
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46	16	0
96	4	0
4	0	8
220	0	4
5	0	4
40	4	0
77	4	0
15	0	133
104	0	4
28	0	4
123	0	4
35	0	1
3	1	0
176	0	4
34	4	0
52	0	4
649	2	0
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528	0	142
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95	0	141
1103	0	2
434	0	9
3	0	706
262	0	1
264	0	3
33	0	4
185	4	0
3	6	0
4430	8	0
107	12	0
4595	0	4
1207	0	2
36	0	309
898	0	1
1133	1	0
154	2	0
207	0	2
7	28	0
51	20	0
101	2	0
359	0	1
140	0	2
2464	2	0
143	0	1
480	1	0
30	0	3
1643	7	0
876	4	0
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63	1	0
57	0	192
31	0	96
108	1	0
18	0	48
48	0	49
218	0	48
1831	1	0
304	1	0
1948	2	0
3640	4	0
1692	0	52
91	104	0
73	52	0
3745	0	4
10	0	9
719	0	1
1618	1	0
1704	1	0
1353	0	4
198	0	12
4657	1	0
4341	4	0
4540	4	0
23	3	0
1222	0	8
431	0	2
907	6	0
894	0	1
2595	27	0
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32	0	4
5938	0	1
4558	4	0
12	4	0
43	0	8
4	4	0
29	4	0
112	4	0
13	4	0
58	4	0
302	4	0
14	4	0
68	0	4
48	8	0
32	0	4
19	0	4
33	0	8
524	0	5
811	0	1
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305	1	0
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1482	1	0
36	4	0
18	0	14
98	0	3
1	0	1
13	12	0
24	16	0
21	0	36
27	1	0
554	16	0
147	0	1
653	8	0
851	789	0
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515	2	0
387	0	3
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3628	0	4
316	0	1
896	0	6
1753	0	1
2105	1	0
1263	0	2
871	0	1
1871	1	0
320	10	0
178	4	0
932	0	1
1082	0	259
2738	4	0
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173	1	0
11	0	4
93	0	8
38	4	0
48	0	2
943	0	2
2016	0	5
4544	0	4
43	0	4
1719	0	2
1381	135	0
205	5	0
2191	0	536
4	0	1
1200	148	0
557	0	885
86	0	590
276	0	295
2088	0	1
208	0	313
112	0	1
2950	4	0
168	0	4
366	2	0
600	2	0
133	0	2
45	135	0
190	0	1
446	1	0
1008	0	2
1098	1	0
2433	1	0
268	0	1
716	0	1
1591	1	0
823	0	200
393	0	520
2215	4	0
1233	3	0
68	0	107
37	10	10
58	0	55
107	0	162
22	0	324
24	0	2
233	4	0
2888	0	4
46	16	0
2612	0	1
6644	2	0
2	0	4
271	0	4
17	0	4
201	0	1
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305	4	0
233	0	1
2132	1	0
109	4	0
46	4	0
355	0	4
1247	1	0
275	106	0
324	2	0
635	4	0
110	0	4
38	4	0
335	0	4
1560	0	4
96	12	0
113	1	0
10	0	36
99	0	2
111	0	72
101	1	0
2	1	0
35	1	0
407	108	0
24	0	36
24	36	0
9	327	2
84	180	0
188	108	0
88	0	504
33	0	1
4	0	1
69	1	0
699	5	0
233	0	2
146	4	0
1586	0	1
4125	2	0
443	0	1
77	7	0
154	0	1
2240	318	0
3344	2	0
32	2	0
110	0	10
178	0	2
36	0	317
17	0	12
325	2	0
114	4	0
21	0	1
133	2	0
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133	3	139
147	2	0
110	7	0
856	0	2
2271	343	0
770	0	2
127	0	1
177	0	1
16	15	0
1504	1	0
698	1	0
18	0	1
117	0	4
91	0	1
24	0	3
3	5	0
8	0	1
413	0	1
19	4	0
19	0	1
27	0	1
3	1	0
39	1	0
86	2	0
2	0	1
7	0	3
8	0	1
10	0	6
6	0	26
89	0	2
279	0	3
15	0	2
598	4	0
622	1	0
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212	0	1
4	0	1
517	6	46
28	0	60
78	0	25
1	5	0
11	10	15
43	1	0
2	4	0
58	0	5
277	0	1
22	1	0
103	0	1
1	0	1
13	0	10
81	20	0
39	1	0
1	4	0
82	0	1
532	0	1
276	0	1
5	0	2
283	1	0
291	0	1
275	1	0
2010	5	0
15	0	15
1445	4	0
49	0	1
144	0	2
130	0	4
468	4	0
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24	0	4
653	4	0
95	0	6
1066	0	2
114	1	0
12	0	1
18	0	5
263	996	961
94	0	1
1095	0	58
21	0	4
80	0	10
57	0	1
59	0	4
13	4	0
40	4	0
186	4	0
1270	0	2
1002	4	0
42	4	0
328	0	4
974	42	17
19	21	0
7	0	6
8	1	0
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3	3	0
31	3	0
12	0	8
8	52	0
7	16	0
10	0	3
3	55	0
14	1	3
24	43	22
16	0	6
12	0	1
12	162	0
42	0	2
2	0	18
30	0	1
28	0	2
17	0	3
14	0	5
4	0	1
5	38	0
9	279	0
3	1	0
9	3	0
84	6	0
68	0	2
1	0	1
61	33	13
6	41	0
18	6	0
12	63	1
49	10	0
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49	19	0
124	0	1
2	2	0
1	1	0
21	0	2
5	0	2
7	3	0
90	178	30
161	2	0
1	0	1
15	0	1
115	0	23
9	0	2
1	0	1
9	0	1
3	185	0
43	0	1
23	0	3
107	174	0
804	1	0
28	0	1
244	6	0
2341	1	0
1764	832	0
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4	6	0
96	12	4
24	73	16
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152	0	62
8	19	0
33	27	47
58	45	0
16	18	0
8	241	29
11	27	0
1775	29	0
28	1	0
194	1	0
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830	2	0
2	83	0
773	1	0
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301	0	2
2314	2	0
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967	30	0
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60	2	0
4	0	6
2	0	2
17	0	20
8	2	0
322	0	1
1786	0	3
9	16	0
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858	4	0
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523	0	16
2985	1	0
1359	0	3
1017	28	0
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32	60	0
32	120	0
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32	4	0
46	28	0
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72	32	0
13	60	0
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54	0	4
1313	0	10
57	0	2
330	0	4
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5541	3	0
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1072	0	4
75	8	0
141	0	12
92	0	140
4	0	76
6	0	8
10	0	8
106	0	44
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7	12	0
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126	48	0
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9	1	0
49	0	1
38	48	0
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710	1	0
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1407	0	4
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2	0	4
9833	2	0
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1	10	0
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294	0	1
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56	0	46
3082	0	1
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80	30	87
54	76	38
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8	133	0
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894	1	0
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341	5	0
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6	0	4
24	0	2
55	0	2
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1715	1	0
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1552	102	0
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5	1	1
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70	1	0
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141	0	1
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1027	0	6
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61	0	3
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5382	30	100
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140	0	72
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572	1	0
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619	4	0
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611	0	16
567	0	9
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42	7	0
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108	0	9
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56	9	0
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48	0	207
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112	0	3
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60	0	232
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146	0	466
22	3	0
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541	1	0
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898	1	0
6630	1	0
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5868	0	4
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2625	4	0
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1	0	4
35	13	11
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4478	0	4
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925	2	0
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11	1	0
438	22	0
360	0	1
757	8	0
135	0	2
17	39	0
40	3	0
1	4	0
2	1	0
1740	0	3
160	1	0
535	8	0
892	19	0
163	1	0
448	0	1
2250	1	0
490	2	0
1961	0	2
889	14	0
49	228	0
41	0	2
74	8	26
39	0	6
51	0	2
721	1	0
1022	0	1
40	4	0
22	0	4
56	2	0
747	0	2
1455	0	20
707	0	117
140	2	0
1142	0	6
28	0	5
1	0	18
4	0	1
5662	6	0
2101	0	1
3565	0	1
1419	2	0
759	8	0
412	2	0
635	0	2
805	3	0
298	1	0
1164	1	0
1750	0	5
20	0	1
150	0	1
113	0	2
1	1	0
39	0	1
123	0	2
92	0	38
11	1	0
9	0	1
2	0	3
14	6	0
12	4	0
12	9	0
3	0	1
20	0	2
236	2	0
18	0	10
38	0	5
8	2	0
26	0	2
155	0	4
8	0	2
22	0	2
14	0	8
9	0	1
23	0	1
9	0	6
39	384	383
40	2	0
14	0	4
4	18	0
18	0	2
1622	0	3
1001	0	1
962	0	1
1456	0	9
294	0	6
1952	11	0
26	0	1
1142	25	5
7	1	0
178	0	4
320	1	0
1338	1	0
572	0	1
269	1	0
825	0	6
175	0	5
23	0	180
1299	0	1
1569	0	756
2385	1	0
266	0	43
1285	0	1
6122	0	22
1359	0	1
447	0	4
329	4	0
91	3	0
5	0	1
162	0	22
444	0	4
761	0	1
2045	1	0
4524	4	0
184	2	0
808	1	0
1835	0	8
501	0	4
151	0	4
269	4	0
79	4	0
188	0	4
2225	0	2
1735	0	7
847	0	1
2430	8	5
11	0	7
854	4	0
2874	0	14
114	3	0
59	0	48
58	8	17
22	0	1
5	0	8
8	0	1
11	23	67
15	2	0
10	0	12
6	0	1
9	6	0
2	1	0
25	0	1
19	0	13
3	0	1
9	1	0
4	1	0
11	13	0
3	0	2
3	14	0
86	12	0
53	39	0
169	0	16
1	0	1
68	0	1
197	0	26
2	0	6
62	0	42
6	0	6
1065	1	0
1656	1	0
13047	0	1
1765	0	1
10193	0	30
3189	0	3
3137	0	1
1736	0	1
416	205	1
15	1	0
2	2	0
1189	16	0
485	7	0
888	2	0
1033	0	1
610	4	0
2314	5	0
2300	1	0
3050	1	0
496	7	0
3489	5	0
469	0	2
13	4	0
222	0	2
753	7	0
431	1	0
763	0	1
9	0	3
1774	0	4
168	28	0
11	4	0
302	4	0
17	3	0
1022	8	0
667	14	0
90	4	0
32	4	0
216	0	2
59	0	2
188	4	0
1230	1	0
485	0	40
15	0	2
183	34	0
2332	0	4
179	0	4
891	0	4
48	0	2
1015	4	0
78	4	0
481	4	0
33	0	8
39	4	0
542	0	1
731	0	1
638	1	0
1441	0	9
584	3	0
163	0	1
258	4	0
985	0	28
503	2	0
124	0	2
1742	1	0
7980	3	0
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1931	1	0
4472	1	0
2129	4	0
205	0	8
691	1	0
1596	231	0
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1001	1	0
3570	0	14
21	8	0
110	0	4
274	0	4
14	24	1
35	0	1
3	0	4
4	2	0
3385	0	2
1406	0	1
1647	0	1
2695	0	1
1544	0	36
852	5	0
1559	0	4
586	2	0
919	0	3
335	0	1
1238	57	0
1861	0	1
155	0	172
10	0	24
29	0	8
8213	2	0
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1426	2	0
4884	4	0
161	0	2
901	1	0
11	1	0
296	2	0
8175	0	2
1	10	0
229	0	4
260	3	0
128	3	0
24	30	0
124	2	0
254	0	4
93	1	0
3	2	0
19	2	0
296	0	4
17	0	2
1231	15	11
157	1	0
1184	4	0
2144	89	0
61	33	0
200	0	112
1391	0	3
1556	2	0
7935	0	1
5059	0	3
1104	0	1
515	1	0
141	2	0
2871	1	0
3375	4	0
1138	0	1
1430	4	0
3959	0	5
1031	0	6
889	18	0
56	3	0
322	0	1
2824	0	3
105	3	0
8	36	0
152	0	3
20	1	0
70	3	0
52	0	3
932	0	1
8265	0	1
3856	1	0
6294	1	0
3771	0	3
18	0	3
58	0	1
188	5	0
317	8	0
827	0	1
51	1	0
210	0	3
790	0	2
689	0	1
376	0	1
257	1	0
211	6	0
878	4	0
23	0	14
16	0	14
7	5	77
12	0	4
10	0	2
13	0	2
136	0	2
24	4	0
336	4	0
14	0	2
17	0	2
23	0	2
6	2	0
42	27	0
25	75	0
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100	0	10
19	0	6
384	0	2
252	0	1
771	0	1
1201	1	0
503	5	0
1075	0	1
2904	1	0
597	1	0
167	0	8
548	0	21
19	0	4
153	0	1
1082	0	2
38	4	0
45	0	2
2174	8	0
54	0	3
110	1	0
1814	4	0
59	5	0
15	4	0
140	0	4
36	0	4
31	0	21
197	0	4
1093	1	0
1584	1	0
305	0	4
518	0	3
162	9	5
50	4	0
32	4	0
281	0	4
623	0	1
51	0	121
97	41	0
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248	40	327
57	0	41
227	0	40
168	1	0
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1870	0	1
966	0	1
3459	0	4
165	0	4
1875	0	3
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1594	0	2
625	0	1
239	4	0
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671	0	30
11	0	2
24	8	0
564	0	1
7	0	1
459	0	3
2043	1	0
737	0	3
772	12	23
18	59	58
546	2	0
46	4	0
22	0	16
257	0	1
631	0	1
352	1	0
615	1	0
59	1	0
7	1	0
127	2	0
641	0	1
869	0	2
379	0	12
38	0	8
704	1	0
904	2	0
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6	10	0
65	0	64
26	12	0
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65	16	0
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35	11	0
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15	1	0
34	32	0
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1	3	0
28	11	0
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5	5	0
39	16	0
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15	1	0
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31	1	0
15	1	0
63	1	0
6	20	0
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33	0	5
11	16	0
11	0	5
37	0	1
4	0	9
23	27	0
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59	1	0
8	4	0
25	4	0
12	1	0
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8	1	0
36	4	0
2	12	0
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4	1	0
29	32	0
35	166	12
62	1	0
15	1	0
46	0	3
60	13	0
3	0	1
7	3	0
16	0	1
4	4	3
15	52	12
13	0	6
15	1	0
7	23	0
2527	0	24
489	2	0
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644	0	2
64	4	0
201	0	2
1527	6	0
1098	0	103
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9	1	0
4	2	0
48	0	4
8	8	73
6	0	8
31	1	36
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7	0	1
5	0	64
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29	0	4
4	0	26
4	0	37
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16	1	0
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14	0	27
33	0	27
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6	1	0
16	0	1
1	0	7
20	0	62
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20	13	66
29	0	5
20	0	23
31	16	121
1733	0	2
1373	3	0
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199	1	0
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63	14	0
301	6	0
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3506	41	0
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385	2	0
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704	9	0
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957	3	0
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181	2	0
17	0	6
26	0	6
536	0	2
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2078	4	0
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894	1	0
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60	1	0
2532	16	2
4107	1	0
1351	0	40
299	0	80
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173	1	0
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18	1	0
89	2	0
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6	0	2
131	2	0
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129	882	0
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33	0	1
73	2	0
32	91	0
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194	1	0
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16	2	0
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16	265	0
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93	2	0
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592	0	1
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869	1	0
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72	8	0
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134	0	8
1677	1	0
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2477	0	1
1199	39	1
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12	24	137
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34	0	20
79	15	7
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2771	0	12
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10	1	0
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7	8	33
38	28	0
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7	18	23
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67	10	27
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67	1	0
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4	0	39
69	3	0
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15	4	0
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1011	0	1
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3100	14	0
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3972	2	0
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24	0	34
1526	0	5
3683	1	0
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3	0	9
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2045	1	0
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18	5	0
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528	4	0
18	0	4
1093	1	0
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4850	1	0
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5287	8	0
16	8	16
8220	0	1
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2479	2	0
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1618	0	8
69	0	10
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6	0	2
2	0	2
50815	4	0
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1876	0	1
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18	3	7
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1796	1	0
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100	100	0
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95	0	4
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2	46	0
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81	15	0
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15	0	18
2551	1	0
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5	1	0
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5675	0	3
4	0	20265
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838	1	0
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349	1	0
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2	0	2
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1	0	2
356	0	1
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24	24	0
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40111	983436	326879
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118	0	1
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5	0	5
27080	3	0
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916	7	0
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682	1	0
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32	0	2
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8553	1	0
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6	0	2
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23	0	2
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14	0	16
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608	1	0
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78	8	0
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1790	1	0
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3	0	3
581	12645	12645
585	0	1
3730	2	0
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10	0	8
4616	8	0
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2	24	0
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758	0	1
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4	0	16
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34	0	1
74	4	0
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235	0	8
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26	0	4
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43	4	0
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8900	1	0
658	16	0
3104	0	33
16288	0	3
6451	0	1
343	0	2
4828	0	1
6	0	3
530	2	0
2613	1	0
1095	0	4
12695	0	1
6099	0	1
73	12	0
272	0	2
2724	2	0
4392	0	1
9625	1	0
21629	1	0
73	0	1
10647	1	0
1366	0	1
1509	2	0
347	0	3
255	3	0
11013	1	0
168	0	1
782	1	0
2333	0	1
14618	2	0
5226	1	0
1856	0	1
11598	29	0
745	6	0
106	6	0
82	0	6
29	0	1
25	0	12
38	1	0
52	0	10
1	0	2
43	0	1
138	7	1
23	0	1
5	0	1
17	1	25
6	0	1
12	44	2
27	48	15
11	2	0
6	5	0
21	8	0
7	18	0
6	0	6
4	0	1
20	5	0
1	12	0
13	45	33
17	1	0
36	1	0
25	1	0
7	31	30
19	8	0
24	8	0
10	92	7
22	52	9
9	0	5
7	5	0
33	1	0
8	1	0
6	0	23
53	3	5
11	3	0
1	0	4
54	7	0
5	3	0
27	3	0
10	1	0
28	0	18
1	3	0
21	3	0
21	2	0
8	0	5
7	0	11
7	17	0
2	0	2
9	3	0
9	14	0
28	0	3
61	3	0
12	1	12
13	0	1
11	0	1
43	5	0
43	0	35
9	1	0
8	0	1
50	100	71
36	2	0
29	4	0
42	2	0
6	1	0
13	2	0
7	0	37
6	1	0
6	0	1
1	0	4
17	4	0
70	4	0
60	0	1
6	1668	1
56	0	5
53

chain 27160230 HG03710_chrY_random0000095 288998 + 1 287920 HG002_chrY 62432599 - 39164328 39452294 2
544	0	3
9071	1	0
21691	2	0
9840	1	0
28435	6	0
22259	0	2
28	0	2
12	2	0
14	0	15
312	0	52
90	26	0
34	26	0
7297	1	0
20533	6	1
8	7	0
1287	0	4
3812	4	0
1605	0	11
13117	0	4
11242	0	2
25554	0	1
13275	5	0
40209	0	1
25834	0	2
21670	1	0
4168	0	1
4613	0	1
146	1	0
433	0	2
6	0	1
12	0	1
7	13	14
35	0	1
10	0	2
30	0	2
70	0	1
31	1	0
15	5	0
5	0	4
50	0	2
13	0	1
71	0	3
10	0	2
43	0	3
18	0	2
41	0	2
12	0	1
11	1	0
41	0	1
31	0	54
4	44	0
15	1	0
51

chain 3058705 HG03710_chrY 44618133 + 22458039 22490336 HG002_chrY 62432599 - 40507615 40539913 3
6287	0	2
4952	1	0
21057

chain 1191634 HG03710_chrY 44618133 + 17275695 17288338 HG002_chrY 62432599 - 45634118 45646761 4
1386	0	3
6458	1	0
4090	2	0
706

chain 1005 HG03710_chrY 44618133 + 29649674 29649690 HG002_chrY 62432599 + 29226428 29226444 5
16