##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2157506278 HG03371_chrY 55674668 + 81254 24389142 HG002_chrY 62432599 + 60340 24162561 1
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747	0	2
337	0	4
15	8	0
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75	22	0
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32	0	2
1283	309	0
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677	8	0
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73	0	4
230	0	54
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5	0	4
87	4	0
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2851	1	0
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728	0	6
158	0	3
13	17	74
32	17	0
658	0	1
354	0	3
336	1	0
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932	0	8
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25	0	1
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10	2	0
1742	12	0
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738	112	14
57	1	0
1285	0	1
571	1	0
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4	0	2
968	0	12
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816	129	129
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12	360	0
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78	270	0
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1372	8	0
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6	8	0
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1192	0	4
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1005	2	248
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4	1	0
7	1	0
81	0	816
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160	0	4
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719	0	1
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60	197	0
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3	20	0
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64	1	0
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286	0	1
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54	0	8
21	16	0
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93	1	0
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22	4	16
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12	177	0
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214	295	0
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2267	3	0
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557	0	4
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34	0	12
79	0	10
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722	2	0
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143	0	3
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1247	1	0
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486	0	4
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99	0	2
284	1	0
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35	1	0
146	0	252
69	396	35
84	216	0
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33	0	1
4	0	1
69	1	0
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82	0	1
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315	1	0
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72	8	0
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8	35	11
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48	119	0
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8	2	0
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664	1	0
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86	2	245
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50	4	27
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655	0	2
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13	0	1
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371	0	1
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127	62	0
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5	0	22
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1419	2	0
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574	4	0
39	1	0
167	0	1
3577	0	1
495	2	0
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63	2	0
243	0	2
163	82	0
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894	0	4
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17	31	0
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1740	0	3
694	0	1
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163	1	0
448	0	1
944	133	0
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1014	1	0
13	1	0
490	1	0
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1054	2	0
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75	0	2
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56	2	0
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32	2	0
1013	0	20
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26	1	30
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1619	0	2
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153	0	1
806	1	0
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1162	1	0
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14	16	37
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9	0	2
10	0	1
9	0	24
38	0	2
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41	0	2
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21	240	364
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8	0	2
54	12	0
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87	0	1
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44	8	0
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1441	5	0
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81	3	0
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37	0	3
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42	2	1151
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44	0	3
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10	0	535
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24	44	0
7	982	0
4864	347	0
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24	0	62
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285	58	0
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619	1	0
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1253	6	0
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979	0	1
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1594	1	0
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1264	19	11
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743	4	0
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2644	0	10
700	0	1
1687	15	0
499	20	0
7197	0	5
5541	0	40
30	0	5
96	1	0
1065	0	15
1473	11095	0
693	36696	8892
3259	0	3
289	10	0
234	0	20
566	30	0
3054	0	5
73	0	5
1593	10	0
256	0	10
549	0	25
5175	5569	0
370	10	0
4974	5	0
601	0	10
5007	0	5
5531	0	5
5010	3	0
528	10	0
6055	1	0
92	5	0
859	5	0
4638	5	0
385	10	0
443	5	0
2172	7676	0
1538	5	0
1290	7658	0
6270	5	0
829	20	0
415	0	5
2705	0	5
6219	0	15
502	15	0
809	5	0
4825	0	20
1890	0	5
5661	5	0
2650	15	0
4830	20	0
10189	10	0
1260	10	0
6248	20	0
2754	0	5
4755	5	0
1275	0	5
3253	0	5
720	22498	0
1141	0	5
790	10	0
1999	10962	3245
339	0	20
29	15289	0
397	0	15
700	5	0
445	0	15
234	0	15
69	0	15
1288	0	5
1788	10	0
3811	25	0
2010	0	5
3758	0	5
366	0	3826
1437	15	0
1993	0	15
56	0	3816
3815	0	5
3803	0	10
1751	5	0
675	0	15
1349	5	0
1782	5	0
3806	10	0
579	5	0
1427	15	0
7655	10	0
1770	0	5
679	0	15
84	0	15
1217	0	10
29	0	2423
33	0	5
1751	5	0
29	0	1
608	15	0
102	0	10
1263	10	0
39	5	0
1759	10	0
658	15	0
26	0	15
61	0	25
1243	0	5
1808	0	5
780	5	0
1302	0	5
9353	0	10
5721	0	5
1846	0	5
796	10	0
1216	1	0
380	1	3696
12	0	15
6	0	55
231	0	5
1198	10	0
775	20	0
608	10	0
640	0	3851
10279	5	0
491	0	5
2424	15	0
912	4	0
4449	5	0
2747	0	15
195	10	0
7047	0	10
1242	10	0
2405	0	5
3472	5	0
2691	0	5
2422	0	5
3510	0	10
1479	0	5
1250	10	0
2391	0	5
9174	0	10
3195	10	0
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5415	5	0
5837	0	10
1752	0	5
5825	0	5
853	10	0
1304	20	0
57	10	0
188	0	5
50	0	5
2473	5	0
815	0	5
195	0	5
4404	5	0
955	5	0
807	5	0
376	1	0
2094	0	5
2888	0	20
1281	5	0
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3071	5	0
43	5	0
1470	5	0
4126	0	5
329	5	0
2319	0	5
1840	20	0
81	5	0
760	10	0
218	0	5
225	5	0
25	55	0
1519	5	0
702	0	5
4006	0	10
6020	15	0
1231	5	0
964	5	0
3545	5	0
2489	0	10
1400	5	0
1533	0	5
479	0	5
428	15	0
569	0	1
172	0	10
48	0	5
610	5	0
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7273	2	0
13732	0	1
2223	1	0
7495	0	2
298	1	0
13931	0	5
27	4	0
1402	1	0
5202	1	0
1969	0	6
8008	8	0
696	6	0
836	0	1
2353	0	1
16921	0	2
2847	0	7
14507	0	1
5194	8	0
6622	1	0
7891	1	0
7882	8	0
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422	16	0
949	0	20
3703	2	0
1031	0	12
24760	0	12
4887	1	0
643	0	1
783	2	0
352	4	0
5205	1	0
7260	0	14
8339	12	0
3553	25	0
10441	1	0
2447	0	21
968	0	12
926	4	0
81	4	0
14334	0	4
12899	1	0
1181	0	1
12631	1	0
16076	2	0
25444	0	1
2762	1	0
4758	0	1
8796	0	4
2013	0	1
10869	0	8
122	0	4
22251	0	1
6367	20	0
3892	0	1
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49880	0	1
8359	0	5
5194	1	0
1394	0	1
32033	0	1
16404	0	4
29430	0	1
9141	4	0
9264	0	1
1994	4	0
6638	13	0
22502	2	0
27894	0	2
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19488	8	0
46997	11	0
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28	0	4
1061	0	4
1451	4	0
49	4	0
67	8	0
11785	4	0
31976	0	1
39833	2	0
7791	0	3
15791	0	1
7747	0	1
2909	6	0
169	1	0
12751	1	0
4385	0	12
25548	0	451
1171	0	1
10441	0	1
3104	0	2
26	1	0
7248	0	1
30632	0	1
49880	0	1
39586	1	0
18382	0	1
4288	5	0
15676	2	0
31321	1	0
4371	0	4
29733	1	0
99504	0	2
13616	1	0
19432	0	1
7108	0	1
185	0	1
5817	2	0
44231	0	1
17511	1	0
188	13	0
684	0	2
468	1	0
1150	0	1
230	1	0
225	11	0
47	1	0
160	0	4
151	1	0
205	1	0
5	1	0
118	0	1
50	0	3
253	2	0
342	0	1
161	1542	0
20433	1	0
2991	0	4
3482	1	0
5447	0	1
14046	5	0
55	5	0
18476	0	2
8557	0	3
2976	6	0
918	9	0
3626	1	0
7978	15	0
2333	1	0
13037	1	0
11502	0	5
4647	1	0
5909	1	0
22717	6	0
4373	1	0
14308	1	0
10465	0	1
682	2	0
18764	3	0
61702	0	2
128	0	4
26	0	8
10037	0	1
5559	2	0
4678	1	0
10310	0	4
34586	0	6
1299	4	0
49	4	0
7444	1	0
38422	1	0
37575	0	1
339	0	1
15942	0	2
13340	0	1
5898	0	2
18	2	0
6102	1	0
15136	0	2
623	0	8
34478	1	0
15699	0	1
3058	0	6
46473	0	4
59	0	8
1969	0	1
9805	0	2
4376	0	3
27180	4	0
6439	2	0
5933	0	1
5855	0	1
5187	0	16
314	10	0
10077	0	1
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25	2	0
5583	4	0
2309	1	0
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2865	1	0
3720	0	2
486	20	0
79196	12	0
79	4	0
1587	4	0
4392	0	4
2054	0	2
15733	7	0
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155	29	0
948	2	0
582	0	6
2882	8	0
5459	1	0
1300	0	5
5502	0	2
351	2	0
3668	0	1
296	0	4
1432	4	0
11530	3415	3411
12969	0	8
3957	2	0
355	0	2
5555	0	5
1257	0	1
3068	0	1
2379	8	0
2898	2	0
1692	25	0
36731	1	0
31423	0	1
1839	0	3
11569	1	0
6406	1	0
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7357	4	0
1746	0	7
1475	5	0
3293	0	2
1165	4	0
7416	0	2
11014	1	0
3476	0	1
1369	0	2
15114	0	1
3247	0	1
4313	3	0
677	15	0
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5196	2	0
28147	1	0
3035	0	1
3972	0	2
11984	2	0
65	2	0
23	0	2
11583	1	0
2503	3	0
5819	4	0
1602	4	0
289	0	1
10529	4	0
6828	2	0
21	2	0
2	19	0
21	23	0
153	0	69
30525	4	0
8583	0	2
28662	0	1
36	0	14
5839	0	8
1189	0	2
19042	0	2
5005	0	1
15397	0	1
13539	1	0
3783	0	2
640	1	0
44692	0	2
12504	0	1
5882	3	0
15	1	0
35959	2	0
3473	0	1
5504	2	0
4897	0	1
7133	0	1
23339	4	0
3615	2	0
5591	0	1
292	0	2
13330	1	0
2445	27	0
25992	3	0
23	0	4
7958	4	0
21167	0	4
14590	0	1
161	2	0
66	2	0
1135	1	0
2579	0	2
4972	0	1
24084	26	0
645	1	0
45373	0	1
6627	1	0
850	1	0
21718	0	2
938	1	0
14662	0	1
2598	0	1
12742	0	1
11182	2	0
19	0	2
2000	3	0
14159	0	4
3548	0	1
6603	2	0
18	2	0
6	10	0
1716	0	12
3608	0	8
4228	0	1
4068	0	1
8914	7	0
5257	2	0
5597	0	4
13839	1	0
30439	1	0
16849	1	0
17941	2	0
2784	4	0
118	0	4
78	16	0
1690	0	8
843	1	0
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3680	2	0
2554	0	1
19314	0	3
10111	0	20
767	0	5
7	5	0
35	5	0
1692	0	4
786	8	0
2970	1	0
693	0	8
17974	4	0
4767	0	4
238	4	0
2328	0	5
283	0	4
5756	5	0
4414	0	2
2190	4	0
56	4	0
2168	4	0
1137	4	0
4879	1	0
21227	0	3
36026	0	1
17079	0	1
4401	0	41
474	4	0
6923	0	3
11666	25	0
15150	0	4
610	4	0
4980	1	0
12717	1	0
3841	8	0
11614	1	0
51084	0	1
1372	0	2
35	2	0
1699	1	0
40084	3	0
11709	0	1
16813	0	1
7192	0	1
19869	1	0
8887	1	0
3949	4	0
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926	1	0
6580	0	4
5861	0	1
482	0	1
2586	0	4
35235	2	0
17162	16	0
24354	0	1
8702	0	4
17425	44	0
2591	0	1
151	1	0
9557	8	0
328	16	0
67	0	8
7905	1	0
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25257	8	0
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3667	0	1
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6723	0	1
2804	4	0
2800	0	1
50	4	0
5816	0	1
1798	0	1
2728	0	2
5169	0	1
4816	0	1
2976	0	1
928	2	14
40252	2	0
2955	0	1
801	0	1
18	1	0
4	1	0
583	12642	12645
586	5	0
3730	2	0
42	7	0
16	0	1
4634	0	2
18555	0	1
14410	6	0
67	0	2
7	0	2
2283	0	1
1675	0	1
1081	1	0
1992	1	0
3275	18	0
8	34	0
7023	0	4
877	0	1
22445	0	1
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10709	4	0
8364	1	0
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18	0	4
7485	4	0
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1711	1	0
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8187	0	1
1326	0	1
1911	2	0
6584	0	1
4120	0	4
1160	0	1
21764	1	0
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123	0	18
6440	35	0
4	3	0
2596	0	1
14767	0	1
765	0	1
3930	0	2
22557	4	0
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2628	0	2
4725	1	0
72	1	0
2264	4	0
6	8	0
534	4	0
6655	0	2
1091	0	4
17	0	4
11314	0	6
3088	2	0
11249	1	0
1539	46208	46210
1540	0	1
9013	0	1
1054	1	0
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3085	2	0
4119	1	0
7111	0	16
58	12	0
69	0	4
81	0	1
7621	4	0
533	8	0
8736	2	0
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13	0	5
10524	0	2
4262	2	0
168	1	0
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378	0	4
35768	0	1
9215	0	4
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6768	0	1
4845	0	2
2488	4	0
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3172	2	0
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2414	0	4
2932	1	0
5618	17	0
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7726	0	4
17	4	0
8245	0	1
22969	0	8
19907	2	0
25	0	2
3569	0	2
1156	8	0
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41721	2	0
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526	0	4
79	8	0
18204	0	1
1822	5	0
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670	4	0
25	0	4
12359	15	0
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1170	0	1
88	0	1
6880	4	0
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2032	2	0
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2398	0	1
15568	1	0
5617	0	1
30570	0	7
11635	0	2
579	1	0
550	0	3
24366	2	0
73	19	0
1631	1	0
31836	0	1
6326	0	1
13908	1	0
42	4	0
3074	0	1
7337	2	0
26	52	0
5019	1	0
3438	1	0
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14	0	1
52	0	2
15472	0	1
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43	0	2
8270	0	1
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27840	0	1
5549	5	0
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30	0	4
8718	0	1
1657	0	6
20132	2	0
6447	8	0
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25	8	0
4877	3	0
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963	1	0
185	1	0
13368	0	1
4294	27	5
88	8	0
616	0	4
5931	0	12
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1730	0	8
10922	1	0
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174	0	1
6986	1	0
5426	1	0
7865	0	8
9899	0	1
210	0	1
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858	0	1
4274	1	0
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42	0	1
19	0	8
21245	0	19
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174	0	4
1487	0	1
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20354	0	1
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31474	1	0
11	6	0
1	0	3
43	4	0
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4204	1	0
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129	0	13
1	0	2
65	0	3
2461	0	3
1537	3372	3372
5751	1	0
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1	2	0
39126	0	1
8	5	0
19	0	1
5	0	1
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12	0	1
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6634	0	9
130	6	0
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33	0	2
13	8	0
4	12	0
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3	7	0
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5632	2	0
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23	2	0
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4521	1	0
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6093	1	0
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54	0	3
20	4	0
902	1	0
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229	2	0
83	0	2
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3742	1	0
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27	20	0
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45	0	2
726	1	0
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2	2	0
5630	4	0
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1	0	1
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52	10	0
8033	1	0
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2890	1	0
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34	4	0
5	20	0
4	0	64
1591	0	1
1055	0	1
145	0	1
2305	0	1
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13431

chain 66688804 HG03371_chrY 55674668 + 54877601 55671304 HG002_chrY 62432599 + 61647336 62432575 2
2131	0	1
736	0	1
6215	14392	10823
4834	0	5
1676	1	0
7396	16238	6604
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22	4	0
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22	8	0
10	433	156
28

chain 4352096 HG03371_chrY 55674668 + 17353904 17400111 HG002_chrY 62432599 - 45214480 45260689 3
13217	0	12
13192	0	2
3004	2	0
2440	0	2
17	8	0
2478	0	4
239	8	0
11602

chain 1190969 HG03371_chrY 55674668 + 16967736 16980376 HG002_chrY 62432599 - 45634118 45646761 4
1386	0	6
6455	1	0
4090	2	0
706

chain 427764 HG03371_chrY 55674668 + 23358992 23363503 HG002_chrY 62432599 - 39338719 39343231 5
2490	0	1
2021

chain 322143 HG03371_chrY 55674668 + 15103901 15107313 HG002_chrY 62432599 - 47507067 47510475 6
2617	4	0
791