##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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442	1	0
935	3	5
54	0	8
17	0	27
7	40	0
2088	1	0
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572	0	389
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1480	1	0
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64	8	0
391	4	0
109	12	0
743	1	0
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219	36	0
5	8	0
1569	1	0
52	0	4
16	0	8
4	0	4
114	2	0
312	1	0
4	11	0
499	0	3
1905	1	0
47	0	1
170	1	0
767	0	69
113	0	5
1378	10	0
466	5	0
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38	0	1
1172	0	1
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366	2	0
956	1	0
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2283	0	4
2240	0	337
287	4	0
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400	0	1
494	4	8
60	4	0
16	16	0
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47	1	0
589	2	0
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9	0	5
39	0	1
12	5	0
569	0	1
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974	0	2
239	47	0
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42	241	15
6847	375	0
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1522	1	0
799	0	9
1784	34	0
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1507	1	0
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437	0	4
5	0	22
403	0	1
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163	165	0
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1903	1	0
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932	0	1
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56	2	0
588	0	2
48	0	2
107	0	2
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1712	0	117
8	2	0
882	5	0
392	0	6
22	1	30
5	4	0
1854	1	0
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97	0	1
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39	0	1
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2	0	3
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2	0	2
17	0	141
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44	0	1
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9	0	2
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1	0	2
6	0	4
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32	0	2
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4	2	0
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14	335	357
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94	12	0
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50	1	0
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6313	4	0
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280	8	5
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2162	5	0
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18	2	0
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6	0	6
1851	0	1
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964	2	0
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570	1	0
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1742	1	0
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84	3	0
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39	0	3
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37	0	3
2	0	3
11	0	45
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124	3	0
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44	3	0
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82	0	3
49	0	36
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35	45	0
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170	3	0
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9	0	6
171	0	3
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69	84	0
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42	0	3
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24	540	0
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285	58	0
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169	0	2
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6812	1	0
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92	8	0
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691	0	1
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54	8	0
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1	11	0
9804	0	1
916	67	44
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33	0	1
979	0	1
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568	1	0
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1376	4119	0
2	5	0
5858	15	0
8	2751	0
592	1373	0
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898	1	0
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1626	0	1
1119	5	0
373	35953	16546
4584	10	0
6989	15	0
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6496	20	0
33	5540	0
241	5	0
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293	0	5
13	0	5
1933	27870	0
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1880	0	10
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36	0	15
5495	0	25
45	0	5
96	1	0
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1473	11101	0
693	25563	8892
1869	0	5
76	0	5
1304	0	3
289	10	0
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561	15	0
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289	10	0
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68	0	20
883	0	5
2303	5	0
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289	10	0
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206	5565	0
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2759	0	5560
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1818	0	5
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6622	5563	0
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642	0	1
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1402	7671	0
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3	5	0
5436	5	0
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37	0	5
1232	5	0
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1265	0	5
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720	7501	0
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543	0	5
790	5	0
1999	10982	3245
339	0	20
29	15274	0
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69	0	15
1288	0	5
3806	0	5
5558	5	0
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366	0	3826
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1772	0	5
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33	5	0
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24	0	2423
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653	15	0
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61	0	25
1243	0	5
397	3731	3822
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673	15	0
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973	10	0
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38	0	5
9369	2	0
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32	0	2
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55	0	8
773	0	1
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923	16	0
81	8	0
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384	0	1
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111	1	0
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28	0	2
1063	0	4
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67	0	4
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5730	4	0
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118	0	1
50	0	3
253	2	0
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161	1542	0
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914	0	6
3620	1	0
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678	16	0
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18	2	0
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6415	2	0
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5	0	5
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56	0	2
3907	0	4
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59	5	0
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42	0	2
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32	0	10
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636	2	0
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56	4	0
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43	2	0
6	14	0
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234	4	0
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28	0	4
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474	4	0
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635	0	1
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928	2	26
453	1	0
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587	12647	12645
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4	3	0
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13	3	0
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114	4	0
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62	4	0
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527	4	0
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13	0	5
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181	0	4
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17305	1	0
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79	20	0
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579	0	1
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3517	0	1
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11	0	2
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1	7	0
44	0	2
42	4	0
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3	7	0
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4075	3368	3367
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20	4	0
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39	0	8
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955	4	0
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88	4	0
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32	0	2
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93039	70943	326
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386	41887	2085
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23	466	6295
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121	2	0
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50	4600	2764
121	12	0
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75	0	8
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107	33902	88637
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74	80	0
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657	38	2
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6	8	134
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21	8	0
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4	5	0
56	113	7
52	5	0
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7	5	0
38	0	5
4	20	0
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64	3	0
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27	0	3
61	3	0
15	9	0
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79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1668	1
114

chain 11514688 HG03050_chrY 56041276 + 24493311 24623171 HG002_chrY 62432599 - 38401468 38539790 2
99	0	1
5409	0	1
1810	4	0
3125	0	3
5129	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
1371	1	0
2178	4	0
3440	1	0
10	1	0
715	0	4757
5559	1	0
425	1	0
701	7152	0
7	1	0
2251	0	1
4310	1	0
1457	0	11
1558	1	0
3724	1	0
3316	5	0
1212	0	3
1985	0	1
1162	0	2
860	0	1
826	3	0
9089	1	0
195	0	12
4126	12	0
740	0	1
912	0	8
2508	0	1
1668	13	0
84	0	6
1925	0	1
3438	4	0
754	0	1
10674	0	2
21692	0	7
223	1	0
95

chain 1190862 HG03050_chrY 56041276 + 17119104 17131749 HG002_chrY 62432599 - 45634118 45646761 3
1386	0	3
6458	1	0
4090	4	0
706

chain 427642 HG03050_chrY_random0000537 85695 + 25204 29715 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 6804 HG03050_chrY 56041276 + 24631309 24631469 HG002_chrY 62432599 - 38539790 38542814 5
2	0	2864
158