##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2153502055 HG02738_chrY 55652133 + 84059 55639548 HG002_chrY 62432599 + 60340 62432577 1
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316	1	0
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7	154	0
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328	1	0
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874	1	0
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632	0	105
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4	4	0
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68	0	4
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33	0	8
524	0	5
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13	12	0
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27	1	0
554	18	0
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8	2	0
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906	526	0
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3032	6	0
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3555	0	8
86	0	2
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1200	148	0
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45	135	0
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34	0	12
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712	2	0
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69	1	0
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713	1	0
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211	0	62
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460	10	0
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6451	2	0
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1629	19	12
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563	0	36
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1374	0	8
614	6	0
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889	18	0
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11	0	1
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267	25	0
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18	16	0
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18	0	3
58	0	1
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7	0	4
14	2	0
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548	0	21
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3894	104	52
41	6	0
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39	52	12
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15	1	0
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12	16	0
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34	4	0
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89	0	1
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3	0	1
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99	0	2
45	0	40601
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2439	1	0
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4363	20	223258
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54	1	0
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2	9	0
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3569	1	0
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19	6	0
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1707	5	0
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4072	3372	3372
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644	39678	39663
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2952	0	26846
35158	0	5
20	2071	16205
3367	1	0
3534	0	1
3534	1	0
6240	0	14139
9022	5	0
28351	25	0
1881	1	0
8740	0	25
1901	3534	0
1469	15	0
3685	0	25
3370	15	0
150	25	0
18673	1	0
494	0	20
74	0	25
14	5079	1599
1328	1	0
494	0	20
66	0	40
6176	3495	0
3748	0	1
527	20	0
47	40	0
29907	20	0
28076	0	15
1129	3484	0
129	5	0
2606	0	5
3088	0	15
24	15	0
371	5	0
7014	5	0
1438	30	0
2030	10	0
389	1	0
1297	0	1
196	0	1
48	4	0
1566	5	0
389	1	0
1527	5	0
950	0	5
1020	1	0
447	2636	13156
3509	5	0
7804	15	0
18741	0	2395
3769	5	0
18950	2	0
16252	0	2
2444	0	2
8382	12705	0
24348	0	4
8979	2	0
26	1	0
5880	0	4
2763	1	0
1725	0	1
9266	0	3
16380	3	19
48289	0	10
2433	3	0
21	0	36
5539	0	2
4326	8	0
4255	1	0
3416	0	4
1517	4	0
861	1	0
18648	19	0
1776	0	3
1309	1	0
724	0	1
1972	4	0
1725	5	0
866	1	0
6335	1	0
9791	0	1
2723	1	0
45	0	6
1324	0	1
6011	0	1
8120	0	5
407	1	0
1864	10	0
7215	0	1
3912	0	4
915	0	2
3143	14	0
8900	1	0
658	0	32
74	80	0
2998	0	33
16288	0	3
6451	0	1
343	0	2
4828	0	1
6	0	3
530	2	0
2613	1	0
1095	0	4
12695	0	1
6099	0	1
73	12	0
272	0	2
2724	2	0
4392	0	1
9625	1	0
7862	1	0
13514	4	0
253	1	0
73	0	1
13870	0	2
11269	1	0
168	0	1
782	1	0
1717	0	1
15234	2	0
5226	1	0
13455	29	0
745	6	0
106	6	0
116	7	0
1	0	1
75	1	0
52	0	10
1	0	2
43	0	1
10	0	1
15	2	0
3	0	1
10	4	0
20	8	0
91	11	36
24	5	0
1	0	6
12	43	2
24	62	4
14	75	17
28	18	0
2	0	2
12	0	1
18	27	3
17	10	0
7	32	22
48	6	0
43	4	0
7	23	29
40	167	8
22	59	10
8	0	5
40	1	0
14	12	30
46	1	0
1	20	0
15	3	0
64	3	0
27	3	0
57	3	0
21	3	0
59	17	0
2	0	2
9	3	0
9	25	1
27	0	3
61	3	0
15	9	0
78	5	0
67	0	5
15	1	0
26	1	0
33	101	15
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1666	1
56	0	5
53

chain 10913281 HG02738_chrY 55652133 + 24134622 24271641 HG002_chrY 62432599 - 38401468 38539790 2
63	0	1
35	0	1
15477	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
7714	0	4757
650	20341	6035
7	1	0
2251	0	1
4310	1	0
1457	0	11
1558	1	0
3724	1	0
967	1	0
2349	4	0
3200	0	1
2024	0	1
9915	1	0
195	0	2
4136	15	0
740	0	1
912	2	0
2516	0	1
1668	14	0
84	0	6
1925	0	1
3430	0	8
754	0	1
32368	0	7
223	1	0
95

chain 3742662 HG02738_chrY 55652133 + 19399296 19438967 HG002_chrY 62432599 - 42850342 42889998 3
15515	1	0
4450	4	0
6526	10	0
13165

chain 427764 HG02738_chrY 55652133 + 23248111 23252622 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 327146 HG02738_chrY 55652133 + 18710219 18713676 HG002_chrY 62432599 - 43575590 43579047 5
3457

chain 322611 HG02738_chrY 55652133 + 14778360 14781768 HG002_chrY 62432599 - 47507067 47510475 6
3408

chain 6804 HG02738_chrY 55652133 + 24279780 24279940 HG002_chrY 62432599 - 38539790 38542814 7
2	0	2864
158

chain 2683 HG02738_chrY 55652133 + 12392026 12392054 HG002_chrY 62432599 + 12511308 12511336 8
28

chain 1073 HG02738_chrY 55652133 + 185795 185806 HG002_chrY 62432599 + 170344 170355 9
11