##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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27	29	0
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252	0	135
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37	0	1
1540	0	1
2927	1	0
2977	4	0
81	0	8
24	0	10
107	0	8
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2076	0	2
2814	8	0
46	5	0
172	0	3
539	0	10
2629	0	3
3684	4	0
423	0	4
20	0	12
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1648	1	0
971	0	339
2064	0	9
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177	0	1
1735	0	64
300	0	1
39	1	0
1112	0	2
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164	21	0
63	1	22
69	29	0
17	50	0
4	8	0
79	29	0
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38	16	0
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669	0	1
1637	1	0
3699	9	0
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2272	0	10
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36	0	4
2764	1	0
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876	3	5
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17	0	27
7	40	0
1718	0	4
69	0	1
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1959	1	0
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3958	0	1
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5	0	4
881	0	3
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13	16	46
7	0	21
32	5	0
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23	0	404
64	1	0
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8	2	0
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550	0	1
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3120	16	18
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66	27	0
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120	0	2
75	0	2
1764	1	0
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18	0	1
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823	1	0
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127	13	6
6	1	0
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1643	7	0
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1831	1	0
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4	1	0
12	0	55
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91	104	0
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719	0	1
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27	0	3
64	1	0
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3127	0	10
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41	2	0
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982	0	2
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75	0	9
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594	0	4
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2049	4	147
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35	1	0
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63	0	5
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6	0	1
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279	1	0
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1	4	0
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21589	1	0
7037	5	0
5175	4	0
14	0	4
24636	1	0
10789	0	2
1366	33	0
59762	2	0
8655	0	4
44	2	0
2	2	0
7266	3	0
2781	0	1
10237	1	0
36628	0	4
8268	8	0
1305	12	0
49	16	0
16234	0	2
164	1	0
6201	2	0
3188	2	0
20077	1	0
7837	0	4
10575	0	1
19498	0	1
15831	2	0
19352	0	3
17	4	0
7631	0	3
11937	4	0
2292	0	8
34478	1	0
16626	0	1
2131	3	0
46479	0	24
39	12	0
183	0	2
1792	0	1
9805	6	0
4378	0	5
30247	3	0
3370	2	0
9702	2	0
6875	1	0
400	0	27
303	11	0
3395	2	0
29386	0	2
5083	0	1
5609	0	12
28	0	2
9671	1	0
6532	4	0
2387	0	1
2498	0	12
9428	1	0
11600	2	0
4959	0	1
7776	0	1
6585	0	2
486	16	0
2349	3	0
6663	0	1
1090	0	2
352	1	0
2286	0	1
9221	0	2
7104	1	0
33724	2	0
6459	0	1
5663	2	0
4278	24	0
6058	0	4
2054	0	2
4148	0	4
58	0	4
11519	1	0
2785	5	0
19861	25	0
155	29	0
14	1	0
934	1	0
584	0	4
2220	2	0
662	8	0
2378	0	1
3077	0	1
1287	0	20
5855	2	0
1766	1	0
1902	0	1
296	0	6
1381	12	0
49	4	0
26470	0	1
40	12	0
12	4	0
1388	0	7
286	0	1
1908	2	0
1762	2	0
5912	0	5
1257	0	1
3068	0	1
2379	8	0
668	2	0
2230	2	0
1692	25	0
215	0	55
58571	0	4
14491	0	1
8229	3	0
14313	1	0
6865	1	0
18969	0	2
3228	5	0
3293	1	0
1167	4	0
7416	0	1
3327	1	0
319	1	0
12215	9	0
5341	1	0
9775	0	1
3247	1	0
325	0	1
3988	3	0
65	0	12
600	0	3
5781	0	1
1536	0	1
11640	4	0
1032	4	0
5974	1	0
18726	7	0
17013	0	1
1261	0	2
21085	1	0
12759	2	0
5196	4	0
28147	0	1
3034	0	1
3930	2	0
1807	0	1
10285	0	4
19	4	0
14088	3	0
3753	5	0
2066	8	0
1891	0	2
14876	0	1
2154	0	3
291	23	0
8	0	2
21	2	0
94	0	2
1395	2	0
10359	0	1
17366	2	0
5512	0	2
4643	0	2
11423	0	1
6512	0	1
3078	0	2
7645	5	0
37	0	20
15	0	2
6386	1	0
627	0	2
2233	1	0
1670	0	2
10919	1	0
3140	0	3
6082	0	1
5732	2	0
3419	0	4
3239	1	0
1536	2	0
1467	1	0
13540	1	0
3879	0	3
543	2	0
44692	0	2
4279	2	0
8225	0	1
163	0	4
5715	3	0
15	1	0
20555	0	1
7316	7	0
17065	2	0
35278	4	0
93	0	4
9193	4	0
302	10	0
15777	16	0
4202	4	0
3904	0	4
17882	1	0
23	0	4
7958	8	0
21167	4	0
6624	1	0
1102	0	1
6867	0	1
227	0	22
1113	0	1
2578	0	2
726	1	0
28331	26	0
645	0	1
3175	2	0
15655	4	0
2590	1	0
8506	1	0
10851	0	1
4594	0	1
6422	0	1
1054	1	0
18732	20	0
2986	2	0
940	1	0
17032	1	0
229	0	8
12735	0	1
11182	2	0
19	0	2
2000	9	0
11740	0	1
2524	4	0
146	4	0
2800	2	0
500	0	1
6576	0	4
1763	0	4
4047	2	0
3805	3	0
4069	0	1
1099	1	0
7815	7	0
5257	0	2
5595	0	4
8108	1	0
5731	1	0
8399	1	0
4773	0	1
2181	0	2
15083	1	0
33887	1	2
101	0	2
798	0	4
2898	0	4
78	12	0
1690	0	2
849	1	0
18980	0	2
20999	0	14
6230	0	1
11318	1	0
7996	0	18
7399	1	0
2697	0	4
66	0	4
760	15	0
1692	0	6
4447	0	8
49	4	0
20243	1	0
2449	0	4
238	0	4
2319	0	10
6043	0	5
4409	0	2
2190	12	0
56	0	8
2160	4	0
1137	0	8
4871	1	0
15029	0	1
6197	20	0
11666	0	1
22817	15	0
1545	0	1
1873	2	0
9964	1	0
10159	4	0
12023	0	1
6568	15	0
15150	0	10
604	8	0
4980	0	2
16556	6	0
62698	0	1
1301	0	2
20	0	4
72	0	2
8	10	0
34548	0	1
7234	1	0
6259	0	3
2769	2	0
2678	0	1
11419	1	0
4802	1	0
3309	2	0
4476	0	2
12031	1	0
7837	1	0
7772	1	0
5064	4	0
4318	0	1
770	0	11
2745	0	4
16517	2	0
1088	4	0
6580	0	4
8931	1	0
1460	0	1
23160	0	1
4136	1	0
16864	0	1
6778	11	0
24354	0	1
26131	39	0
2743	1	0
9557	0	4
324	12	0
64	0	12
21808	2	0
6165	1	0
8973	7	0
10125	4	0
1755	0	1
19445	2	0
25009	0	1
7628	0	1
5347	1	0
4706	0	1
8982	4	0
12330	0	1
50	4	0
5816	0	1
8386	0	4
1274	23	0
34	0	1
4536	1	0
280	0	1
2976	0	1
930	8	0
12861	1	0
24957	3	0
941	2	0
1473	0	6
26	5	0
3467	0	352
544	12644	12645
580	0	11
12	0	1
2301	0	3
1408	2	0
42	4	0
16	0	1
10	0	8
1456	2	0
3160	10	0
36	4	0
2372	2	0
9220	5	0
6929	0	1
3691	0	1
993	0	3
5010	0	1
3369	3	0
472	1	0
870	4	0
67	4	0
3	2	0
4	2	0
2287	0	1
1675	0	1
1081	1	0
1992	1	0
10306	8	0
3251	0	2
4859	0	16
15199	0	1
18619	0	1
5677	0	12
11	0	4
9338	0	1
1370	16	0
23814	0	8
7481	0	4
28	4	0
4074	0	1
3939	0	1
348	3	0
7419	1	0
8974	1	0
13293	0	1
1326	0	1
8495	0	3
5282	0	1
21764	1	0
14267	0	4
6577	35	0
4	3	0
3005	0	1
1115	1	0
6847	0	1
6395	0	2
764	0	1
3930	2	0
3039	1	0
13475	0	1
6044	6	0
379	0	13
7997	0	1
10645	1	0
4742	1	0
4429	2	0
3341	0	1
7194	10	0
970	2	0
7133	0	2
1592	0	4
530	0	2
7746	0	4
21	3	0
5	0	3
11306	0	8
3086	2	0
2216	0	2
7903	0	3
225	0	2
897	0	1
604	0	6
929	46209	46210
1540	0	2
9012	0	2
5291	0	4
4115	1	0
7111	0	4
139	0	12
1082	2	0
8565	2	0
868	0	1
60	0	1
6387	2	0
972	5	0
7470	1	0
7509	0	1
4739	1	0
10645	1	0
8001	0	14
366	6	0
868	2	0
5710	1	0
38410	0	6
8501	0	1
11374	0	2
19627	2	0
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6239	2	0
13823	2	0
2363	0	2
1728	0	1
4644	0	2
3708	0	2
8552	19	0
6088	0	1
18694	4	0
7546	0	24
5694	0	2
2881	0	2
2444	4	0
28	4	0
4946	0	1
9182	8	0
12638	0	1
955	12	0
10027	1	0
6955	1	0
3126	2	0
25	0	4
3567	0	3
1155	8	0
2104	1	0
13252	4	0
1315	0	4
6928	1	0
34077	4	0
31481	0	1
24817	0	1
14590	0	4
79	20	0
18204	0	1
80	0	12
15	0	8
1697	0	5
30	0	5
3392	0	1
12290	2	0
91	0	2
5002	0	2
1075	2	0
8	4	0
903	0	3
8905	1	0
632	0	8
3952	0	1
9101	15	0
4426	0	1
15923	0	4
1170	0	2
87	0	2
4851	0	2
1819	8	0
207	0	4
4128	2	0
1859	4	0
173	2	0
10196	0	1
4940	0	2
10299	1	0
8345	1	0
30571	0	10
5470	1	0
6162	0	10
19	4	0
16	0	2
534	0	1
549	0	3
7626	0	1
360	0	19
394	1	0
1876	0	2
4871	0	1
9216	0	4
69	19	0
1631	1	0
3667	0	1
2287	3	0
9881	0	1
5351	4	0
7131	4	0
3517	0	1
5165	4	0
1161	2	0
12715	0	1
1193	1	0
17	0	3
22	2	0
1266	4	0
1808	0	1
4109	3	0
3495	0	2
12166	0	1
16485	1	0
5797	0	1
10553	0	1
6074	0	5
11507	0	2
1979	0	1
3819	0	8
37	0	2
8270	0	2
1541	0	5
1451	0	2
8154	0	4
12847	0	4
11612	0	17
14911	2	0
4948	1	0
1597	1	0
6372	0	1
5549	5	0
25368	8	0
5286	0	1
3469	0	1
1657	0	8
13380	0	1
4404	1	0
2345	0	1
6446	0	4
7864	1	0
10889	0	1
7107	0	8
5130	0	4
25	12	0
4877	3	0
10738	0	2
961	0	4
15332	0	2
2514	5	0
1	7	0
88	10	0
616	0	8
24047	0	2
64	0	2
3	0	1
22	0	20
1160	4	0
690	0	4
31255	4	0
6916	0	2
3080	0	1
12412	0	1
3904	1	0
3960	0	4
10114	0	1
9320	1	0
30914	0	1
25384	4	0
13937	0	1
2123	2	0
5254	0	22
3188	0	6
3499	0	3
907	0	1
5312	0	1
1081	0	1
10904	0	4
25448	0	1
15736	0	4
5481	0	1
13389	0	3
7977	10	0
4867	0	1
4920	1	0
865	1	0
3427	0	1
5479	0	1
6603	0	4
4414	1	0
6698	0	2
11908	3	0
1655	1	0
2724	0	1
2360	8	0
7330	0	1
546	0	2
976	4	0
18238	1	0
12168	1	0
3717	1	0
28473	2	0
11764	0	1
9740	0	1
6874	0	2
652	0	2
11005	0	1
3303	0	3
7263	0	1
18870	0	1
300	0	6
5576	3	0
6722	1	0
3	0	7
1	0	5
3	0	1
62	19	0
27276	1	0
21146	0	8
39	0	4
13	0	12
11	0	28
1952	4	0
2252	1	0
9364	1	0
1995	4	0
32	4	0
2858	0	30
4054	3372	3372
2125	6	0
6300	0	1
3618	1	0
9025	3	0
2383	4	0
3698	0	1
20224	0	4
916	1	0
1529	16	0
1476	12	0
48	1	0
2520	0	2
9	8	0
7041	25	0
6	4	0
10120	12	0
54	0	4
48	8	0
1	2	0
5642	1	0
12164	6829515	6792729
17413	14584	3737
3485	0	1
3078	2	0
1874	1	0
790	6761	2006
119	2	0
4084	0	1
6265	0	1
1446	398	12320
1555	1	0
4314	0	1
1473	13	0
1544	0	2
3722	0	1
1310	0	1
13	0	2
1999	0	2
3207	0	1
2019	1	0
840	3	0
9068	0	1
210	0	4
4129	0	6
1674	0	2
2474	1	0
497	0	1
1172	0	12
84	4	0
1	2	0
1923	0	1
3412	0	4
8136	1	0
176	0	1
11157	1	0
13716	0	6
3343	0	4
3384	0	4
100	12	0
17	12	0
57	0	2
113	0	16
2035	1	0
4135	3	0
17302	1	0
471	0	1
3266	2	0
6879	1	0
1064	1	0
2197	1	0
2148	1	0
54884	1	0
7387	2	0
2569	9	0
1392	1	0
8550	0	11
5842	0	1
604	3	0
6683	0	1
7852	4	0
6976	0	1
12562	0	1
7973	0	1
663	0	1
30228	0	2
16648	1	0
821	0	4
21000	2	0
7773	2	0
3048	0	1
28374	2	0
13665	0	2
4894	0	2
48	12	0
3981	0	2
1745	0	32
432	1	0
14839	0	1
7799	1	0
8134	3	0
1774	1	0
5389	0	2
524	0	1
19	0	2
4725	4	0
15621	0	2
1428	12	0
7369	1	0
1086	1	0
4335	1	0
2238	8	0
2864	2	0
5407	2	0
16850	0	1
814	2	0
4700	1	0
4339	0	1
14	2	0
3805	0	1
2815	2	0
5193	1	0
20	0	1
534	0	1
66	0	1
769	0	5
2934	0	4
14154	0	1
4805	0	2
1458	0	4
2958	0	1
4052	0	1
179	1	0
67	0	1
955	0	2
3905	0	1
212	0	1
2705	0	1
9470	1	0
7434	1	0
7193	0	12
2708	4	0
4844	0	2
406	0	1
7346	0	1
397	2	0
11460	2	0
16	0	4
949	1	0
762	1	0
2848	0	1
935	5	0
1529	1	0
13	1	0
7535	4	0
4936	0	2
12607	1	0
8241	0	1
1930	2	0
5221	0	8
1737	0	2
5608	2	0
2634	0	10
5203	4	0
34	0	2
271	0	1
1559	0	1
10817	0	1
1725	0	1
19389	2	0
451	0	4
26052	1	0
2558	2	0
4001	0	1
4940	0	1
920	0	1
5115	0	2
14076	0	15
64	0	3
64	0	3
2694	2	0
15585	8	3
43	0	3
9455	1	0
146	0	1
1187	1	0
1169	0	1
5276	1	0
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4260	16	0
5704	0	1
902	0	1
10617	0	1
1048	0	4
2040	2	0
5587	1	0
3486	2	0
937	1	0
780	1	0
10190	4	0
8148	0	3
10529	0	11
12715	1	0
9517	0	1
2716	0	2
10688	0	1
6143	6	0
8120	2	0
37	2	0
8824	1	0
3817	1	0
2067	0	12
38	0	2
427	0	2
4398	1	0
10182	0	1
16579	0	4
32240	4	0
67	4	0
39174	1	0
6569	4	0
49	12	0
15478	0	5
3824	0	1
8077	2	0
13320	0	3
3296	1	0
9490	0	1
27201	13	0
1949	0	2
11	0	2
11387	0	1
4736	2	0
5349	0	1
3792	0	6
1442	0	1
6482	0	1
3398	1	0
8267	1	0
2147	1	0
900	0	1
8133	0	13
10295	3	0
2737	1	0
1007	1	0
5076	0	6
2374	1	0
1105	2	0
7002	0	1
2122	0	1
5948	0	1
4091	0	2
16256	1	0
23812	0	1
4548	0	1
2673	0	1
4632	0	1
1682	0	3
4647	2	0
20226	1	0
9632	0	2
24284	0	10
28	8	0
5493	0	1
142	0	1
10275	4	0
9405	1	0
221	1	0
42621	0	4
15706	1	0
679	0	1
7167	0	1
16267	2	0
29	0	4
39	0	2
511	12702	10
12719	10	0
5039	1	0
4458	0	1
21943	0	1
364	1	0
1357	0	1
10468	1	0
7467	1	0
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1885	6	0
4296	0	1
12492	12	0
3906	0	1
12016	0	2
11268	1	0
3476	0	1
306	0	1
9082	4	0
5638	0	1
8768	1	0
358	0	2
2001	1	0
5861	2	14
14385	0	12
2011	0	2
30545	1	0
5027	0	4
19	0	4
521	1	0
5466	1	0
5025	1	0
1056	0	1
8247	0	4
2	0	2
7	0	6
5479	0	1
5313	0	4
10878	2	0
1744	1	0
562	4	0
9803	0	1
13173	1	0
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10438	0	1
7048	0	1
8816	5	0
15883	15	0
7716	0	2867
8254	0	5
1600	20	0
323	0	5
377	1	0
10	0	1
547	0	30
83	1	0
15	0	1
410	15	0
1081	20	0
733	0	55
445	2893	0
24	0	15
656	1	2869
1300	5	0
364	0	1
10	1	0
522	15	0
20	5	0
58	0	8604
30	0	1
15	1	0
437	0	5
1391	0	5
860	1	0
64	0	10
2825	2878	0
594	0	5
60	0	1
1209	0	10
562	0	5
482	20	0
24	5760	0
505	0	5
32	5	0
10969	10	0
5756	5	0
1625	5	0
13	17	2
3195	5	0
3284	0	5
510	5	0
2863	10	0
548	0	10
64	0	1
1002	20	0
1264	0	5
532	10	0
64	1	0
8016	0	15
532	15	0
64	1	0
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2492	2	0
1316	0	2
10743	0	1
5009	0	2
8353	1	0
615	0	2
2893	4	0
4380	0	2
5671	0	2
1888	1	0
4311	1	0
2890	3	0
14077	1	0
5801	1	0
3380	0	12
636	6	0
12420	0	6
262	0	2
318	4	0
1856	2	0
8163	0	1
7982	1	0
730	0	2
6701	0	1
3599	1	0
3147	0	1
6694	2	0
6561	0	1
4282	0	1
1592	1	0
633	3	0
551	0	1
2259	0	3
3395	8	0
3871	0	1
33985	0	15
6916	0	4
14261	3	21
31	0	4
18140	3	0
11786	8	0
10437	0	4
11360	0	1
10053	1	0
1982	2	0
27296	0	8
1820	0	7
27637	4	0
1650	8	0
7837	0	4
16059	0	1
23831	2	0
1315	1	0
8672	0	1
17488	0	2
2169	1	0
16820	4	0
2334	1	0
2119	0	3
5800	0	1
2176	0	6
20438	0	3
13381	0	2
1864	0	4
14010	5	19
17	0	8
5661	0	2
12068	8	0
29609	0	4
5926	0	8
2919	4	0
5630	2	0
4034	0	10
4207	0	6
23	0	1
2724	0	15
4404	0	1
1258	1	0
726	0	6
41	0	2
34791	0	1
3144	0	1
3192	0	1
14511	0	1
879	0	2
732	4	0
5	0	4
4750	0	1
6092	1	0
840	1	0
2923	0	1
2757	0	1
27644	1	0
73	0	14
1312	1	0
3603	0	1
12632	1	0
3742	0	2
22	0	4
107	10	0
14740	4	0
8125	4	0
7036	1	0
2088	0	1
11422	4	0
1944	0	1
4533	0	2
46	4	0
10499	6	0
881	0	2
2458	0	4
8037	6	0
77	0	2
14659	6	0
104	0	4
6996	1	0
9403	0	1
4916	2	0
4588	1	0
25319	23	0
3480	1	0
840	1	0
10845	0	2
5	4	0
15412	92	0
11

chain 11671848 HG02666_chrY 54768090 + 19672296 19801917 HG002_chrY 62432599 - 43575590 43707112 3
15621	1	0
5642	2	0
1	8	0
48	0	4
54	12	0
10120	4	0
6	25	0
7041	8	0
2527	0	4
48	8	0
1476	20	0
2445	0	2
2318	1	0
17908	1	0
3699	4	0
2383	3	0
9025	1	0
4016	1	0
1214	1	0
1063	0	10
696	0	3
749	0	1424
744	6	0
2130	3364	3367
524	1	0
346	1	0
424	0	4
54	1	0
887	8	0
525	0	4
245	0	317
671	0	3
77	0	4
19	0	12
21	0	1
19	0	42
3	0	12
222	0	1
38	1	0
63	0	2
98	0	3
39	1	0
78	0	4
514	0	1
978	0	1
380	2	0
293	0	32
61	0	6
114	4	0
195	2	0
84	0	2
52	0	2
30	0	2
205	1	0
766	0	1
65	1	0
417	0	6
753	0	1
123	1	0
837	3	0
1804	4	0
115	0	1
46	0	2
18	1	0
640	0	1
184	5	0
425	1	0
389	0	3
3963	0	1
58	1	0
1039	1	0
31	0	6
854	0	1
96	4	0
193	0	32
2	0	2
156	3	0
414	1	0
2	0	25
235	0	1
943	1	0
85	0	1
150	8	0
23	0	11
13	0	1
26	11	0
81	0	1
233	0	10
331	0	1
156	0	29
103	0	23
406	0	1
1681	0	1
201	0	6
378	1	0
282	4	0
780	1	0
58	1	0
644	0	5
344	1	0
168	1	0
434	1	0
279	0	4
184	0	4
498	0	1
60	0	2
338	1	0
97	8	3
1270	4	0
373	0	3
146	0	1
286	3	0
596	0	1
303	1	0
775	3	0
2	0	1
197	0	7
31	0	2
161	1	0
658	1	0
419

chain 4508568 HG02666_chrY 54768090 + 26447324 26501811 HG002_chrY 62432599 - 36729698 36784196 4
283	4768	0
5204	0	1
4768	1	0
9441	1415	6195
1140	1	0
1874	2	0
3078	0	1
22413	0	1
99

chain 4349740 HG02666_chrY 54768090 + 17990749 18036957 HG002_chrY 62432599 - 45214480 45260689 5
7914	2	0
5303	0	4
13200	0	1
3005	4	0
26	2	0
2414	4	0
2497	0	8
235	0	8
176	8	0
11418

chain 1190376 HG02666_chrY 54768090 + 17604681 17617323 HG002_chrY 62432599 - 45634118 45646761 6
1386	0	6
6455	1	0
4090	4	0
706

chain 2683 HG02666_chrY 54768090 + 13313541 13313569 HG002_chrY 62432599 + 12511308 12511336 7
28

chain 1114 HG02666_chrY 54768090 + 54760372 54760386 HG002_chrY 62432599 + 62430941 62430955 8
14

chain 1055 HG02666_chrY 54768090 + 12513143 12513154 HG002_chrY 62432599 + 11945862 11945873 9
11