##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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5	0	33
235	0	1
68	1	0
67	0	1
66	34	0
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90	0	6
205	0	1
283	1	0
204	327	0
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86	4	0
10	8	0
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36	0	4
641	1	0
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1091	0	9
1029	0	1
783	0	3
649	0	5
121	0	5
1196	2	0
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41	3	0
2989	17	0
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31	668	0
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751	0	3
2346	40	0
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2173	0	16
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1370	0	2
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316	37	0
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24	0	2
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147	3	0
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634	0	4
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48	2	0
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443	4	0
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336	72	108
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661	2	0
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237	0	2
4740	1	0
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1366	15	0
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7	0	8
53	0	22
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1221	0	1
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412	267	0
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1878	1	0
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1470	0	2
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498	1	0
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68	56	0
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105	0	6
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3562	590	0
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62	10	1321
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31	0	86
57	0	169
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11	0	81
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8	1	0
54	0	4
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33	0	24
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7	0	8
132	6	0
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193	1	0
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279	0	4
2775	1	0
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1632	0	1
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3696	0	4
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88	4	0
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60	0	4
33	4	0
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1178	440	0
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1437	4	0
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2391	2	0
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39	1	0
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14	0	5
1040	0	95
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1682	170	0
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29	4	0
1674	3	0
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359	56	0
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831	2	0
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836	4	0
16	68	18
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824	1	0
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17	0	27
7	40	0
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572	0	389
30	257	0
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58	28	0
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27	60	0
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220	0	4
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60	400	0
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3	80	0
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182	0	62
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4849	19	0
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299	63	0
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7205	0	38
8	0	76
114	0	38
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6525	27	2
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1324	0	12
16	0	189
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691	1	0
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78	0	4
984	0	88
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81	0	16
54	16	0
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90	0	4
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76	0	12
8	0	56
6228	12	0
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286	3	0
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2671	0	1
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37	0	8
64	4	0
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1561	1	0
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72	0	12
56	0	1
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359	1	0
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11	0	2
3763	8	0
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5	4	0
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569	2	0
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38	0	1
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4	0	5
5472	0	1
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323	1	0
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221	1	0
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1763	80	79
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91	82	0
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82	1	0
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55	3	0
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1739	0	4
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74	8	26
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51	0	2
721	1	0
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56	2	0
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10	2	168
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14	0	8
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3	0	1
10	257	357
46	0	10
6	28	0
18	0	2
94	12	0
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3421	7	0
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3986	1	0
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65	3	0
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2633	1	0
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1674	1	0
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1774	0	4
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24	540	0
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3817	0	8
948	1	0
544	0	8
4715	1	0
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156	0	1
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6427	64	0
36	32	0
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711	0	3
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51	0	6
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362	0	4
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9271	0	4
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15	4	0
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662	0	4
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55	0	2
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1067	12	14
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494	1	0
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8	0	2
4	4	0
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18	3	7
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1338	0	4
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277	300	0
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56	4	0
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68	0	2
25	0	8
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18	2	0
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81	5	0
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71	54	0
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67	0	12
134	15	0
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1	0	2
5	1	0
69	0	2
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4	0	20265
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30	2	0
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838	1	0
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1944	2668	104118
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5913	1978	52798
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280	54725	60308
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52	0	4
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1873	2	0
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612	4	0
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12142	1	0
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1409	2	0
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160	0	1
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1084	1	0
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8915	1	0
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324	4	0
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1546	8	0
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16	4	0
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992	3	0
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67	6	0
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13	3	0
1	0	3
47	8	1
4	0	2
60	8	0
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3090	2	0
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2437	46199	46210
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1225	2	0
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379	2	0
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37	0	1
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14	0	1
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85	12	0
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32	0	2
2	0	6
1742	4	1
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31364	0	1
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175	4	0
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458	1	0
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60	0	4
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4075	3367	3367
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1	2	0
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43	0	8
54	13	0
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51	0	1
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2904	1	0
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6718	0	1
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77	2	0
8037	0	20
652	39663	39663
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466	8384	4009
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18293	8	0
31	0	4
35	8	1
10835	1	0
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6944	0	4
12706	1	0
664	0	6
1842	1	0
19132	4	0
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479	2	0
23	0	2
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9123	1	0
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59	0	4
45743	4	0
49	12	0
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29	0	4
41	2	0
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6	9	0
3	2	0
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411	2893	0
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16	5	0
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1128	19705	5143
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1588	5	0
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5	0	5
1378	0	5
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163	0	12442
6233	5	0
3089	0	10
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263	0	10
538	0	5
623	0	10
1202	1	0
474	1	0
253	0	10
1330	5	0
232	0	1
810	1	0
202	0	3127
526	0	12407
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11069	0	5
3221	5	0
14836	1	0
1	6364	0
15564	8162	2649
6	0	5
10	0	280
3526	0	10
33	0	1
1986	8	3
343	0	2763
2432	0	5
2764	5	0
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79	1	0
156	1	0
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355	0	20
57	0	1
156	0	1
783	5	0
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306	10	0
5	0	5
16	0	5507
24	5	0
47	1	0
923	0	5
1753	15	0
77	1	0
2686	0	10
77	0	1
923	0	5
1743	5	0
87	1	0
923	5	0
1745	0	5
85	0	1
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71	0	5531
8188	5	0
2764	5	0
33	5	0
2260	0	5
8831	10772	145
2515	5	0
4632	0	3574
2483	0	2146
1	14478	1700
10409	277856	302797
27131	0	1
4768	0	1
3154	70	0
364	1	0
678	0	1
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10224	0	15
322	5	0
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322	0	5
3192	0	15
260	1	0
61	5	0
3467	0	1
72	0	5
5	0	20
932	5	0
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288	1	0
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288	0	1
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288	1	0
3517	0	1
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3231	0	15
288	0	1
1218	0	5
1767	0	5
13	0	3534
11439	15	0
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843	15	0
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1624	0	5
991	0	3549
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349	0	5
8281	0	20
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526	1	0
1	4	0
771	5	0
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354	5	0
256	0	15
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3135	0	3512
8	1	53
1429	0	35302
3538	1	3505
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2235	0	15
343	5	0
16	20	0
323	20	0
590	10	0
8	3497	21148
12	5	0
1121	1	0
28	7	59
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47	0	1
817	20	0
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361	35	0
315	20	0
602	5	0
1121	1	0
28	7	59
754	0	1
649	20	0
673	0	15
175	0	1
57	5	0
490	67050	0
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8933	0	1
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3640	10	0
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18	1	3550
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1	0	349
608	3107	6611
16237	2418	0
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109	0	10
191	42428	52997
5893	1100	4638
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1150	3547	3547
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13775	576	21688
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15	5	0
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399	3571	3
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810	3489805	2471316
764	3535	3535
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9	8	8
3825	4	10636
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368	3549	0
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858	2	0
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491	1	0
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1909	0	2419
215	0	2
473	1	0
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152	0	9645
3037	0	2
249	0	2
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118	16	0
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287	7	0
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413	0	2
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303	0	1
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2732	1	2416
3032	0	1
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1709	0	2
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778	0	1
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430	1	0
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1008	2	0
80	0	2
452	3	0
53	0	2418
3066	0	1
23274	2419	0
73754	18002789	29568015
9084	7269	10823
952	0	2
12957	23474	6604
648	1	0
10611	4067	548
156	15	0
27391	0	17673
3126	1	0
7069	1	0
6240	0	14139
16573	0	10
10160	25	0
3551	0	25
1865	0	1
5188	25	0
1881	1	0
1645	25	0
3370	0	15
174	0	25
3346	0	15
150	0	25
835	185	3705
25367	577	28596
18716	3482	0
36494	0	3498
552	30	0
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3376	18303	4270
10529	5	0
32709	5	0
70227	8	0
3486	0	1
9807	2	0
4515	4	0
27378	12	0
34972	10	0
15776	3	0
21	0	36
1774	0	1
1087	2	0
2677	0	2
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6743	0	4
2550	1	0
6596	0	1
258	18	0
11577	0	7
37	19	0
1776	0	3
1309	1	0
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3697	14	0
866	1	0
4492	1	0
164	0	1
1587	0	1
2918	1	0
9687	2	0
7387	0	2
10395	4	0
7215	0	1
4831	0	1
3144	22	0
8900	1	0
15276	1	0
11261	0	1
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3356	0	3
14	2	0
6284	1	0
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106	0	2
84	0	2
74	0	4
24	0	4
68	0	4
6	2	0
37	0	4
134	2	0
4888	0	1
1543	3	0
475	0	3
3645	0	6
5	0	6
77	19	0
1489	1251	0
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120	1	0
466	0	2
160	47	0
31	74	0
27	58	0
715	42	0
68	0	7
20	1	0
40	9	10
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30	0	5
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27	24	0
1	0	1
6	1	0
13	0	45
23	15	152
33	0	54
3	1	0
6	0	5
12	0	1
4	0	1
12	2	32
12	0	2
6	0	1
17	40	35
26	0	1
3	0	2
12	0	1
18	20	3
17	10	0
8	1	0
10	68	695
5	0	1
18	3	0
15	9	0
4	0	1
12	0	61
33	0	1
2	0	47
8	0	12
36	0	1
6	0	5
13	0	32
21	0	1
23	0	1
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2	2	0
27	0	1
1	0	25
49	4	0
66	4	0
66	423	156
30	1	0
2	3	0
15

chain 4355805 HG02492_chrY 51490179 + 17226212 17272410 HG002_chrY 62432599 - 45214480 45260689 2
26421	1	0
5446	0	4
2736	0	8
11594

chain 4015237 HG02492_chrY 51490179 + 28275097 28325871 HG002_chrY 62432599 + 28548898 28610189 3
329	5	0
941	5	0
2565	25	0
964	5	0
3520	5	0
3529	5	0
4445	0	17629
8710	0	5
3532	0	5
3524	0	5
3516	0	5
3532	0	5
2298	0	1
557	7058	0
316	15	0
228	15	0
1130

chain 3743149 HG02492_chrY 51490179 + 19596804 19636460 HG002_chrY 62432599 - 42850342 42889998 4
26491	2	0
10499	0	2
2664

chain 3059364 HG02492_chrY 51490179 + 21745453 21777755 HG002_chrY 62432599 - 40507615 40539913 5
11793	4	0
20505

chain 428205 HG02492_chrY 51490179 + 22984403 22988915 HG002_chrY 62432599 - 39338719 39343231 6
4512

chain 322143 HG02492_chrY 51490179 + 14976381 14979793 HG002_chrY 62432599 - 47507067 47510475 7
619	4	0
2789