##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 1744191715 HG02392_chrY 50273937 + 77539 50269302 HG002_chrY 62432599 + 25897 62432577 1
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23	0	6
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171	0	42
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359	56	0
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1	13	0
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7	40	0
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874	0	6
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97	0	1
661	10	0
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1	1	0
87	0	1
41	0	1
112	22	0
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14	1	0
29	20	12
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8	16	46
14	0	2
10	0	1
4	1	0
7	0	2
31	36	12
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17	0	8
6	0	20
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17	4	0
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11	0	1
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24	11	32
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10	0	3
136	0	1
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14	0	8
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6	1	0
30	384	387
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4	18	0
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1624	0	1
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178	0	4
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4488	255	0
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745	4	0
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91	3	0
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1446	2	1
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807	0	150
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73	25	0
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1774	0	4
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11	0	45
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82	0	3
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171	0	3
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1569	34	11
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623	0	1
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122	58047	214974
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6	0	1
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10572	46203	46210
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4001	3372	3372
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18	6	25
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63	24823659	37303135
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447	2636	13156
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48	21	175
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24	0	1
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51

chain 328396871 HG02392_chrY 50273937 + 6274991 9796519 HG002_chrY 62432599 - 52562439 56521946 2
5191	1	0
12315	20	223258
153	0	1
240	0	4
43	1	0
560	0	5
329	0	1
54	1	0
124	0	1
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92	388	0
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281	1	0
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40	0	4
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327	0	1
722	1	0
81	0	1
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42	22	0
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786	3	0
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772	0	2
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390	0	1
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407	16	0
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2	2	0
26	2	0
3939	0	2
21681	0	1
4497	0	12
1623	0	1
21873	0	4
45055	12	0
80219	0	1
38219	1	0
26044	0	1
2548	0	4
2673	0	1
1884	4	0
48578	1	0
34568	0	4
20	0	4
36018	0	1
2839	0	1
35863	0	1
14611	2	0
35599	0	1
18102	0	1
57239	15776	0
100012	1	0
12642	4	0
14407	0	4
11395	2	0
8083	4	0
12322	4	0
38472	0	3
12352	0	2
43	4	0
91	12	0
1597	6	0
35216	2	0
77134	2	0
2481	0	2
1159	0	10004
4048	11	15
12266	0	9
2308	0	3
5864	0	27
113	0	2
28	0	3
27	0	3
252	29	0
41	29	0
4770	0	1
11167	0	1
5950	6	0
5732	8	0
15322	1	0
2362	1602	0
322	0	1
2755	2	0
1755	0	1
3328	30	0
59	2	0
43	0	2
26	0	6
2	2	0
172	8	0
176	0	1
364	0	1
1701	0	1
999	0	2
687	4	0
1023	0	14
1979	0	2
2334	0	1
1400	0	4
32	1	3
886	0	2
320	0	1
375	2	0
2675	20326	0
8061	0	1
285	19	0
569	1	0
1721	0	4
311	0	1
311	1	0
292

chain 11105822 HG02392_chrY 50273937 + 24405360 24551645 HG002_chrY 62432599 - 38399346 38539790 3
2221	1	0
15478	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
6999	1	0
715	0	4757
650	27492	6035
7	1	0
2251	0	1
4310	1	0
1457	0	10
1559	1	0
3724	1	0
1300	1	0
2016	3	0
3200	1	0
1163	2	0
862	0	1
9915	1	0
195	0	2
4136	12	0
740	0	1
912	4	0
2516	0	1
3683	0	1
11728	2	0
24833	0	25
205	1	0
95

chain 4354720 HG02392_chrY 50273937 + 17404980 17451182 HG002_chrY 62432599 - 45214480 45260689 4
13217	4	0
13204	0	1
5445	2	0
2497	0	4
239	0	8
11594

chain 6804 HG02392_chrY 50273937 + 24559784 24559944 HG002_chrY 62432599 - 38539790 38542814 5
2	0	2864
158