##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2171730113 HG02391_chrY 49213589 + 0 49209316 HG002_chrY 62432599 + 25 62432577 1
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336	1	0
2017	26	0
1561	0	8
5812	72	0
11	4	0
3	20	0
2	2	0
39	24	0
13	1	0
3	21	0
391	1	0
305	0	1
588	0	1
570	0	1
495	0	1
2424	0	4
2442	0	45
221	45	0
106	90	0
276	45	0
297	45	0
18	45	0
27	90	0
332	31	0
1193	4	0
351	4	0
377	0	4
358	4	0
1015	7	0
343	0	3
18	0	12
66	0	4
277	28	0
18	13	3
425	0	4
14	0	4
70	4	0
62	24	0
45	0	4
278	0	4
187	0	4
18	0	8
29	4	0
11	4	0
100	20	0
14	8	0
7	20	0
54	0	4
8	0	19
90	4	0
16	12	0
28	3	14
16	0	1
2614	0	4
844	0	2
1400	0	1
1719	54	0
235	1	1
6	0	2
27	0	2
27	0	2
27	60	0
1	6	0
197	0	2
121	27	0
226	0	1
1431	0	3
2078	8	0
1265	0	4
31	0	4
933	0	370
65	2	0
571	0	3
1	0	55
755	4	0
1751	1	0
119	111	649
223	3	0
1258	0	8
85	0	12
696	20	0
5261	4	0
174	4	0
10357	0	2
36	0	309
898	0	1
1133	1	0
361	0	2
7	28	0
51	20	0
101	2	0
359	0	1
140	0	2
2464	2	0
143	0	1
480	1	0
30	0	3
1643	7	0
876	4	0
974	48	0
63	1	0
57	0	192
31	0	96
108	1	0
18	0	48
48	0	49
218	0	48
1831	1	0
304	1	0
1948	2	0
3640	4	0
1692	0	52
91	104	0
73	52	0
3745	0	4
10	0	9
719	0	1
1618	1	0
3057	12	0
4564	0	5
302	1	0
276	0	12
493	4	0
77	4	0
3	20	0
103	0	4
32	4	0
14	4	0
27	8	0
540	4	0
172	0	4
3256	1	0
35	3	0
3772	0	4
57	4	0
23	2	0
488	3	0
738	0	4
1340	9	0
894	0	1
2594	0	1
1185	0	1
531	0	4
316	1	0
31	1	0
7	155	0
93	0	1
328	1	0
949	1	0
125	1	0
702	0	2
1961	0	1
313	1	0
874	1	0
272	1	0
1309	2	0
1058	0	1
632	0	105
1097	0	1
41	2	0
1031	0	4
2859	1	0
1336	2	0
4	0	7
13	0	4
23	0	4
39	0	7
15	0	11
25	0	4
2156	0	1
507	777	0
537	2	0
49	21	0
14	4	0
60	3	0
8	10	0
11	0	5
16	0	3
4	0	1
14	0	2
19	0	7
346	0	1
3777	2	0
334	0	1
119	2	0
1240	1	0
74	0	1
803	0	14
2486	0	2
1253	4	0
12	4	0
43	0	8
4	4	0
29	4	0
23	0	4
85	4	0
13	4	0
58	4	0
186	0	4
190	0	8
48	16	0
5	0	3
1269	1	0
407	0	1
1321	0	2
1482	1	0
36	4	0
18	0	14
98	0	3
1	0	1
13	12	0
24	16	0
4	4	0
17	0	36
27	1	0
554	16	0
147	0	1
653	4	0
99	0	4
49	0	4
695	526	0
743	0	1
515	2	0
387	0	3
960	0	270
3628	0	4
316	0	1
896	0	6
5122	0	2
871	0	1
3747	268	0
637	0	259
3048	1	0
46	16	0
7607	0	4
1721	2	0
6161	0	590
295	0	590
2973	1	0
3439	0	4
366	2	0
780	135	0
188	0	3
446	1	0
483	0	1
524	0	2
1098	1	0
2433	2	0
268	0	1
7309	0	4
379	3	0
68	0	107
37	10	10
58	0	55
107	0	162
22	0	324
24	0	2
233	4	0
324	0	4
2564	8	0
2657	0	2
6644	2	0
2	0	4
292	0	4
201	0	1
273	0	1
305	4	0
233	0	1
613	1	0
1519	1	0
109	4	0
46	4	0
355	0	4
1247	1	0
275	106	0
324	2	0
635	4	0
110	0	4
38	4	0
335	0	4
1560	0	4
96	12	0
113	1	0
10	0	36
99	0	2
69	0	1
41	0	72
101	1	0
2	1	0
35	1	0
407	108	0
24	0	36
24	36	0
9	327	2
84	180	0
188	108	0
88	0	504
33	0	1
4	0	1
69	1	0
699	5	0
233	0	2
146	4	0
4886	0	2
824	2	0
443	0	1
548	235	0
1924	318	0
3344	2	0
32	10	0
347	16	2
333	14	0
439	24	0
129	6	0
26	2	0
94	4	0
24	116	0
3	4	0
143	0	16
113	130	0
135	2	0
12	2	0
105	1	0
861	0	2
1214	49	0
2129	11	6
16	20	0
1606	2	0
2	1	0
3	9	0
23	4	0
704	0	4
10	1	0
61	0	4
72	0	4
427	0	6
200	0	26
102	2	1
267	1	0
618	4	0
622	1	0
249	3	0
259	1	0
612	0	1
93	0	1
49	1	0
2	0	1
108	0	15
67	10	0
24	5	0
11	10	0
9	5	0
49	46	6
34	683	0
63	2	0
9	3	0
109	0	10
59	50	0
40	0	15
20	1	0
30	75	0
52	133	0
37	0	2
8	2	0
81	20	0
39	1	0
1	4	0
85	10	0
530	0	1
563	0	2
431	1	0
138	2	0
777	2	0
1233	5	0
1723	0	12
378	0	4
156	8	0
176	0	4
83	4	0
27	2	0
1040	60	0
151	1072	1072
593	0	8
76	1	0
53	0	2
131	0	1
1287	0	58
21	0	4
117	0	3
104	4	0
17	0	8
15	4	0
795	0	2
649	0	4
42	0	7
859	0	1
1	0	2
98	4	0
42	4	0
50	0	2
12	0	1
61	0	2
2	0	1
197	0	4
122	2	0
708	0	2
57	1	196
146	3	0
7	0	340
27	0	2
28	0	1
79	2	28
13	0	49
7	1	0
1	0	7
8	0	20
3	0	12
10	0	10
9	0	26
30	0	2
54	0	61
3	0	1
8	0	168
178	171	181
210	3	0
99	1	0
16	2	0
36	64	0
443	1	0
28	0	1
2585	1	0
1691	0	208
594	0	3
432	0	1
206	0	3
4	0	39
31	105	0
26	20	33
5	0	3
8	0	5
8	0	8
182	0	62
8	19	0
33	0	19
9	24	0
11	0	5
3	4	0
58	45	0
16	18	0
11	27	0
8	2	21
8	27	0
1060	0	1
63	0	1
27	0	3
213	41	0
35	0	5
367	29	0
28	1	0
63	37	0
57	75	1
36	0	1
52	38	2
830	2	0
2	83	0
773	1	0
2114	0	5
24	0	10
8	0	1
13	0	10
13	0	5
15	0	10
577	3	0
1225	1	0
611	0	3
2313	2	0
539	3	0
4	0	2
967	30	0
152	2	0
38	0	2
15	0	2
28	4	0
6	0	9
51	6	0
8	2	0
322	0	1
1786	0	4
4	1	0
4	20	0
12	15	0
858	4	0
9	0	1
535	0	4
1023	4	0
1420	4	0
542	1	0
12	0	2
439	0	1
906	0	2
1017	60	0
28	36	0
32	32	0
32	88	0
106	28	0
46	4	0
72	32	0
13	60	0
341	4	0
1403	0	2
1097	0	10
57	0	2
330	0	4
146	4	0
189	4	0
2202	0	2
2785	0	3
549	2	0
1797	15	0
793	0	21
1052	0	4
216	0	12
92	0	140
4	0	76
6	0	8
124	0	44
522	0	2
18	0	1
534	13	10
283	1	0
3438	3	0
1548	0	1
512	0	4
28	4	0
32	4	0
468	4	0
62	0	4
86	4	0
49	0	8
26	4	0
178	4	0
62	0	4
308	0	1
370	4	0
346	0	1
1345	4	0
4667	16	0
97	0	8
174	4	0
469	0	4
364	0	8
30	0	4
1434	1	0
221	0	2
952	0	2
2735	1	0
404	0	2
195	0	2
1477	11	0
2	0	92
27	0	3
25	0	40
32	0	40
20	0	2
13	0	37
46	0	40
43	12	310
8	0	49
16	128	0
51	127	0
1496	2	0
39	10	0
1044	0	4
710	1	0
324	1	0
952	0	4
319	0	38
505	0	4
1913	0	5
566	0	4
232	4	0
113	10	0
907	0	19
32	0	6
705	4	0
1191	0	1
442	0	6
181	65	0
48	10	0
5	25	0
12	15	0
46	0	5
9	0	5
146	5	0
784	1	0
6	0	3
526	0	1
880	0	4
516	4	0
63	4	0
73	4	0
238	0	84
344	0	8
2	0	4
1445	63	0
2155	1	0
2851	1	0
1034	1	0
2348	2	0
1878	0	2
910	114	0
401	0	228
1398	3	0
706	0	1
1426	0	2
170	0	244
1137	0	1
17	0	5
1	10	0
579	1	0
683	183	0
424	0	1
861	0	1
105	0	5
309	0	2
23	0	1
294	0	1
146	1	0
474	1	0
5	2	0
2	2	0
889	7	0
317	2	0
181	3	0
461	1	0
630	0	3
882	0	1
1091	0	4
181	8	0
1236	1	0
376	1	0
1369	0	3
420	0	1
2	0	1
696	0	3
14	3	0
567	15	0
1020	0	1
165	0	1
1995	2	0
225	1	0
236	0	1
955	7	0
87	0	2
846	1	0
2318	0	2
652	1	0
141	0	5
193	1	0
147	5	0
1233	3	0
17	4	0
2706	0	87
35	0	2
2	0	216
1539	91	0
11	0	430
2387	831	0
79	102	0
19	171	0
35	0	57
764	216	0
112	444	0
149	0	46
226	10	0
1483	0	5
1368	0	1
2559	429	87
391	0	2
2957	0	39
18	0	38
69	0	39
103	0	78
2740	0	1
296	0	3
771	0	1
2112	0	1
659	0	19
68	11	87
42	88	12
38	54	320
797	8	0
137	0	4
45	0	8
20	4	0
42	32	0
157	0	14
39	8	0
28	4	0
947	1	0
313	0	1
1343	1	0
789	0	1
798	1	0
170	0	2
1436	16	0
163	0	1
174	1	0
727	25	0
836	1	0
398	4	0
36	0	4
894	1	0
245	1	0
107	34	0
39	0	13
341	5	0
1372	1	0
1602	0	1
4474	0	1
249	1	0
209	0	2
1163	164	0
126	0	1
324	2	0
552	0	2
1128	1	0
1113	122	0
6109	1	0
1226	0	5
229	0	1
1807	0	1
242	0	1
742	0	1
609	8	0
20	0	4
14	12	0
10	0	4
6	0	4
24	0	2
152	0	3
1715	1	0
287	0	7
449	0	1
1552	102	0
269	0	34
70	1	0
301	2	0
36	0	2
141	0	1
141	0	2
1027	0	6
43	1	0
61	0	3
142	16	0
248	0	18
4566	2	0
750	118	0
66	28	100
118	2	0
22	0	2
46	0	2
88	4	0
572	1	0
358	0	2
36	2	0
619	4	0
1407	0	1
9	1	0
615	0	12
504	0	9
54	0	9
210	0	9
208	9	0
14	9	0
9	9	0
30	0	9
42	7	0
9	1	1
3	2	0
182	0	9
18	0	9
108	0	9
12	27	0
153	0	18
105	9	0
36	9	0
147	0	18
67	0	9
196	0	9
56	9	0
54	0	36
66	0	207
1305	0	232
188	3	238
31	0	232
44	0	1630
48	0	232
112	0	3
37	1	0
234	1	0
82	0	230
152	0	1
401	0	232
11	0	232
60	0	232
23	0	1
146	0	466
22	3	0
234	0	1400
44	2	0
767	1	0
309	1	0
2493	1	0
881	0	1
390	5	0
324	0	41
541	1	0
281	0	6
898	1	0
6630	1	0
2487	0	4
21	7	0
5	39	0
8	7	0
3	11	0
247	0	3
84	18	0
515	0	1
622	0	4
26	0	29
3817	0	1
2050	0	4
5092	4	0
2546	210	0
23850	0	269
685	0	1
982	0	1
306	1	0
463	1	0
2635	0	1
5404	0	19
299	63	0
394	0	1
2294	1	0
3269	219	8
82	126	0
6655	0	3
1906	0	4
1130	4	0
1838	0	1
687	12	0
17	0	4
14	0	20
43	4	0
57	0	28
48	8	0
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20	0	4
91	4	0
51	0	76
28	0	4
16	4	0
24	0	4
25	8	0
36	0	4
227	1	0
2188	2	0
2196	1	0
52	4	0
1755	0	4
1	1	0
70	24	0
197	0	12
1117	4	0
635	1	0
471	0	1
2181	0	4
1324	0	12
16	0	189
2018	0	1
1676	0	2
2939	1	0
426	22	0
3115	7	0
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2429	0	2
691	1	0
627	4	0
78	0	4
984	0	88
1082	180	0
19	176	0
2651	41	20
11	14	0
1404	3	0
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377	0	1
14	0	2
402	2	0
6672	0	2
1684	0	2
688	0	1
2060	4	0
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81	0	12
58	16	0
213	0	4
51	4	0
90	0	4
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4523	4	0
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1599	1	0
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67	0	4
5793	0	5
582	4	0
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3379	4	0
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3062	15	3
1179	1	0
12	0	1
817	0	1
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784	1	0
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487	4	0
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63	4	0
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383	4	0
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815	1	0
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1569	1	0
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4698	8	0
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3763	4	0
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564	0	4
15	0	12
128	1	0
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569	2	0
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784	0	1
1453	0	4
1765	1	0
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570	0	1
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662	0	4
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403	0	1
281	1	0
587	0	1
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1931	0	1
1645	0	2
2339	2	0
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62	132	50
51	165	0
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11	1	0
798	0	1
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17	31	0
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1740	0	3
695	8	0
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74	0	20
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51	0	2
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22	1	30
5	5	0
1854	1	0
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83	0	2
42	0	2
22	0	2
14	0	8
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23	0	1
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6	1	0
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331	0	2
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57373	1	0
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20715	4	0
10	18	0
9867	0	6
114	0	8
7161	0	2
2358	0	3
783	0	20
10	0	12
1106	1	0
2431	0	1
2278	1	0
358	0	1
3303	0	1
418	0	6
25	1	0
79	0	16
1941	0	2
985	1	0
1241	1	0
2957	6	0
840	0	1
1505	3	0
786	28	0
5340	0	1
471	0	14
356	0	1
3693	10	0
43	0	1
52	6	0
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391	18	0
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28	6	0
844	1	0
3439	0	1
2431	1	0
1795	1	0
471	13	0
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4204	0	40623
484	18	0
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1505	3	0
658	1	0
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6669	0	2
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325	0	1
1797	0	1
4525	2	0
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2953	0	1
17213	0	2
98	0	2
7165	6	0
33377	4	0
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1132	1	0
8750	0	4
26	0	2
87	8	0
21	1	0
1941	2	0
2618	18	0
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26	6	0
842	0	1
2163	1	0
124	26	0
1116	0	1
823	1	0
1284	1	0
2327	3	0
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356	0	1
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491	0	4
4602	18	0
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26	4	0
842	0	1
1505	3	0
786	20	0
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356	0	1
2000	5	0
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428	0	2
106	2	0
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3661	1	0
393	2	0
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30	0	6
836	1	0
1505	0	3
2723	0	1
3402	1	0
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2412	1	0
989	1	0
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783	0	6
5365	1	0
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7	1	0
349	1	0
1211	0	3
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26	8	0
838	0	1
1505	3	0
658	1	0
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534	0	6
4030	0	20277
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6513	1	0
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99	0	2
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6	2	0
846	1	0
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6126	1	0
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1	2	0
356	1	0
3303	1	0
489	6	0
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2556	2	0
26	2	0
10	0	6
830	1	0
1505	0	3
786	0	32
1937	0	1
3402	1	0
470	11	0
1	3	0
356	1	0
3698	4	0
7273	0	10
5071	1	0
7968	0	4
112	2	0
6982	1	0
117	0	2
26	4	0
3134	28	0
1937	1	0
3885	1	0
358	1	0
3304	0	1
390	0	6
101	0	2
45	0	40601
4168	1	0
2935	0	2
22	4	0
842	0	1
1505	3	0
786	32	0
1937	1	0
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470	0	11
1	0	2
356	0	1
2000	0	5
6380	0	18
2556	0	2
26	4	0
842	0	1
1505	3	0
783	24	0
5350	0	1
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73	0	8
4570	18	0
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364	1	0
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1287	1	0
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27	0	10
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6984	1	0
132	0	4
28	6	0
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5336	1	0
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356	1	0
1206	0	3
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365	0	4
99	2	0
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32	2	0
821	0	1
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9	0	1
355	0	1
3707	0	6
76	2	0
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3426	0	1
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99	2	0
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26	0	4
842	0	1
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31	2	0
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595	0	2
79	0	2
4213	0	1
2816	1	0
166	2	0
821	1	0
2291	0	6
35	0	121774
1103	0	1
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24	24	0
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3699	2	0
97	0	2
138	1	0
3360	0	3
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14	0	4
6	0	2
18	0	6
846	1	0
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1	2	0
3100	0	3
952	0	2
45	0	1
54	0	12
123	0	1
3360	3	0
1101	18	0
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764	6	0
52	0	8
1672	1	0
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8932	2	0
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43	0	4
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33965	2	0
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3383	31	0
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52143	284499	326879
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580	10	0
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1673	5	0
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16439	1067	12127
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336	75740	198689
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206	5565	0
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325	23216	3601
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8	11427	3245
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71	3817	3731
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21809	2	0
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64	0	12
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13	0	5
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79	12	0
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2679	1	0
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4075	3373	3373
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445	7540	200905
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652	39667	39663
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2	0	8
30	7	0
14	8	0
27	24	0
1	0	1
30	0	7
12	0	9
29	16	116
10	0	1
10	4	0
12	0	2
36	0	1
22	1	0
38	0	5
6	0	1
5	0	1
12	13	1
30	290	79
21	6	0
7	18	0
2	0	2
12	0	1
18	27	3
17	10	0
3	1	0
5	1	0
10	9	0
1	3	0
9	1	0
1	5	0
7	19	0
5	1	0
5	1	0
31	8	0
12	7	0
5	0	1
19	37	30
19	7	0
24	271	48
21	5	0
17	18	0
16	1	0
8	6	0
36	5	0
46	35	21
39	0	1
11	0	1
7	3	0
1	0	1
11	0	1
13	3	0
21	1	0
14	4	0
5	1	0
11	18	9
12	1	0
6	3	0
25	0	1
3	0	5
25	17	0
2	0	2
9	3	0
9	25	1
27	0	3
15	0	19
1	0	5
21	3	0
15	5	0
15	4	14
54	8	0
36	2	0
6	1	0
55	1	0
11	1	0
33	111	15
24	2	0
68	2	0
28	1	0
1	4	0
36	0	6
32	4	0
24	0	1
41	4	0
56	8	0
14	4	0
60	0	1
6	1651	1
56	0	5
53

chain 11096668 HG02391_chrY 49213589 + 23667927 23818969 HG002_chrY 62432599 - 38399346 38539790 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
6999	1	0
715	0	4757
650	32265	6035
7	1	0
2251	0	1
4310	1	0
1457	0	10
1559	1	0
3724	1	0
3316	4	0
3200	0	1
1162	2	0
862	0	1
9915	1	0
4333	12	0
740	0	1
912	4	0
2250	0	1
265	0	1
1668	1	0
87	0	3
1925	0	1
3430	0	8
754	0	1
32368	0	26
204	1	0
95

chain 8650346 HG02391_chrY_random0000093 183184 + 91395 183183 HG002_chrY 62432599 - 43575590 43667283 3
21263	2	0
1	12	0
47	3	0
59	8	0
10120	4	0
6	25	0
7039	0	2
2531	2	0
48	4	1
1475	16	0
1529	1	0
916	6	0
23927	4	0
2383	3	0
9025	1	0
9143	1	0
776	6	0
1402

chain 8392625 HG02391_chrY_random0000093 183184 + 2349 91395 HG002_chrY 62432599 + 18764594 18853552 4
337	1	0
1787	6	0
3625	0	1
6293	1	0
9025	3	0
2383	4	0
23927	2	0
916	1	0
1529	12	0
4044	0	2
7050	25	0
6	4	0
10120	15	0
59	3	0
47	12	0
1	2	0
17806

chain 3742543 HG02391_chrY 49213589 + 19023745 19063405 HG002_chrY 62432599 - 42850342 42889998 5
19965	4	0
17025	2	0
881	0	2
1783

chain 6804 HG02391_chrY 49213589 + 23827108 23827268 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158