##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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588	0	1
570	0	1
2920	0	4
2358	90	0
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94	45	0
12	90	0
276	45	0
84	135	0
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45	45	0
18	45	0
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45	135	0
18	0	45
2100	0	4
358	4	0
1015	7	0
343	0	3
96	0	4
277	24	0
18	8	2
426	0	4
14	0	4
70	4	0
62	24	0
45	0	4
84	8	0
194	0	4
187	0	4
18	0	8
29	4	0
11	4	0
100	20	0
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7	20	0
54	0	4
8	0	19
90	4	0
16	12	0
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16	0	1
2614	0	4
844	0	2
1400	0	1
1719	54	0
235	1	1
6	0	2
27	0	2
27	0	2
27	60	0
1	6	0
197	0	2
121	27	0
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1431	0	2
2079	4	0
1302	0	2
933	0	370
65	2	0
1316	0	2
67	4	0
1751	1	0
119	38	0
2138	4	0
93	0	4
696	20	0
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174	8	0
10357	0	2
36	0	309
2402	28	0
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480	1	0
29	0	4
1643	7	0
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60	0	96
1436	68	0
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184	0	1
166	1	0
1782	6	0
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1333	0	830
4	1	0
12	0	55
350	0	2
868	0	4
1692	0	52
91	104	0
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719	0	1
1618	2	0
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10	0	4
60	394	0
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81	961	0
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20	176	4
53	71	0
9	26	0
321	0	6
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76	0	2
22	2	0
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60	0	4
1203	4	0
77	0	4
29	1	0
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493	4	0
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3	20	0
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32	4	0
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540	4	0
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3256	1	0
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57	4	0
23	3	0
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738	0	4
1340	6	0
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1	0	1
5274	0	4
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43	0	8
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68	0	4
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19	0	4
37	0	4
1177	1	0
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564	10	0
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17	8	0
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23	14	0
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690	789	0
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49	1	0
5073	0	2
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2738	4	0
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61	1	0
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9	0	2
7549	0	4
39	0	8
484	0	1
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45	135	0
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2308	1	0
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30	21	0
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75	0	9
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722	2	0
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292	0	4
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46	4	0
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1247	1	0
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35	1	0
407	108	0
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24	36	0
9	327	2
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33	0	1
4	0	1
69	1	0
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824	2	0
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77	7	0
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2240	318	0
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110	0	10
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36	0	317
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321	0	4
263	0	6
94	4	0
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151	0	8
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966	0	1
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3	1	0
169	0	26
89	0	2
897	4	0
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45	0	180
64	0	3
5	28	0
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49	1	0
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15	1	0
89	0	1
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1470	0	1
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1445	4	0
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653	4	0
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1214	0	4
29	5	0
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21	0	4
80	0	10
57	0	1
59	0	4
13	4	0
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42	4	0
328	0	4
830	0	2
57	1	196
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7	1	0
1	0	7
8	0	20
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1	0	1
9	0	191
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2	0	3
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11	0	4
3	0	22
10	4	195
48	0	19
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39	0	13
443	1	0
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1691	0	208
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4	0	39
31	105	0
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5	0	3
8	0	5
8	0	8
182	0	62
8	19	0
33	0	19
9	24	0
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3	4	0
58	45	0
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8	27	0
1124	0	1
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213	41	0
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367	29	0
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63	37	0
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2	83	0
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13	0	10
13	0	5
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51	0	9
51	6	0
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322	0	1
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8	16	0
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61	0	7
160	0	2
1116	0	2
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106	60	0
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28	36	0
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7	12	0
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2822	1	0
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5523	2990	2299
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35	13	11
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503	2	0
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940	0	1
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2	2	0
817	15	0
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84	3	0
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39	0	3
30	756	0
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39	0	3
37	0	3
2	0	3
11	0	45
26	0	3
124	3	0
47	0	6
44	3	0
37	0	3
82	0	3
49	0	36
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35	45	0
53	0	84
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170	3	0
7	0	3
106	0	132
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9	0	6
171	0	3
12	0	3
112	0	3
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21	0	45
37	0	535
194	0	3
69	84	0
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42	0	3
4	0	3
24	540	0
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430	54	113
167	282	0
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36	58	0
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169	0	2
427	0	1
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562	0	13
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4737	0	3
1064	1	0
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2287	231	0
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18	2	0
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965	0	12
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344	1	0
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1642	25	11
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149	0	5
743	4	0
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72	28	0
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932	1	0
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539	0	2
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41	6	0
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39	52	12
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15	1	0
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9	0	1
1	0	27
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1	7	0
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76	0	1
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12	0	2
3121	3	0
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63	14	0
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4	84	0
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4	0	4
81	2	0
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107	2	0
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105	1587	0
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16	346	0
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67	1	0
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830	1	0
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972	0	5
13	0	5
14956	1	0
4740	1	0
10645	1	0
8001	0	1
379	0	4
22578	0	2
22404	0	2
25405	4	0
3837	10	0
3895	0	1
6371	4	0
16686	0	2
30	2	0
26239	6	0
8554	17	0
6088	2	0
6347	0	2
19892	1	0
5718	2	0
2079	1	0
3278	0	4
26902	0	1
20924	2	0
25	0	2
3569	1	0
1158	8	0
16671	14	0
44229	10	0
1127	1	0
12768	1	0
7243	1	0
7123	0	1
32196	1	0
7212	4	0
83	16	0
18204	1	0
108	0	4
1711	10	0
3422	0	1
28913	0	4
13058	5	0
20350	0	8
8136	4	0
4132	1	0
12228	0	6
2395	1	0
21186	1	0
30571	2	0
11642	0	2
1129	3	0
10279	0	1
14089	2	0
73	19	0
1631	1	0
23827	0	1
8008	0	1
6326	0	1
12714	0	1
1235	2	0
3074	0	1
7311	0	2
49323	2	0
14	0	1
2033	4	0
17313	0	3
19469	8	0
12851	0	8
11608	0	5
10463	1	0
17377	0	1
30917	0	4
30	0	4
8718	0	1
1657	0	2
13386	0	1
6749	2	0
6447	0	8
25857	0	4
5163	12	0
15615	0	2
961	3	0
17852	1	0
1	7	0
80	0	2
6	4	0
616	0	4
24049	0	16
52	0	2
26	0	20
1734	0	4
31371	0	1
16984	1	0
13291	4	0
434	0	4
7590	0	1
1878	0	1
210	0	1
3311	0	1
83622	0	3
12	0	4
24906	6	0
10686	1	0
5129	0	1
9636	0	1
34611	0	7
31009	1	0
3128	0	4
3011	0	1
1402	2	0
6698	0	3
11907	0	3
1652	1	0
3997	0	1
9942	4	0
30406	1	0
3717	1	0
28473	1	0
2047	0	1
7871	2	0
17416	1	0
2767	1	0
9939	0	1
3305	0	1
7263	0	1
58833	1	0
3498	0	1
5641	0	1
2512	1	0
1557	0	1
7982	0	4
60	0	4
1952	8	0
2252	1	0
9364	1	0
1995	2	0
32	4	0
2858	0	12
69	0	2
4001	3376	3376
2121	9	0
9919	1	0
9025	3	0
2383	4	0
3698	0	1
877	1	0
131	1	0
443	1	0
193	9323	219689
169	0	1
7252	1	0
5	1	0
3	6	0
6718	0	1
24730	0	1
7311	1	0
3280	1	0
9940	0	1
1720	0	1
1045	0	1
17415	0	4
9919	0	1
24541	1	0
17683	1	0
20310	4	0
59	0	8
15578	6	0
18630	0	1
4399	0	12
6601	1	0
8858	1	0
10639	5	0
7813	0	8
195	0	7
12311	0	1
1077	1	0
21222	1	0
36354	0	1
1075	0	1
6231	3	0
27951	4	0
14	0	2
2	0	2
26	0	4
25157	0	4
8561	0	10
4	0	4
4024	2	0
6961	0	5
6448	0	2
4391	4	0
9881	0	3
15906	1	0
8416	0	1
411	0	5
2116	1	0
16128	2	0
4754	20	0
6093	1	0
840	1	0
3480	23	0
25319	1	0
4588	1	0
14320	1	0
21765	2	0
77	4	0
8037	0	20
652	39673	39663
604	8	0
8103	2	0
83	2	0
14657	2	0
133	0	2
3742	1	0
17548	0	1
86	1	0
27644	0	1
5681	1	0
6906	1	0
27	23	0
4754	2	0
16130	0	1
2542	1	0
650	0	1
3145	1	0
4609	0	1
25787	0	4
4388	0	4
37	0	10
726	1	0
5678	5	0
2725	2	0
4236	0	10
4031	0	1
15049	1	0
29190	0	4
17586	0	1
24	0	1
10763	2	0
17257	1	0
6491	1	0
15209	0	2
7981	0	3
2119	1	0
2334	4	0
18989	0	2
26161	1	0
49047	2	0
92278	8	0
11763	2	0
14368	1	0
3825	16	0
14264	0	4
6954	0	10
33951	0	2
7269	1	0
2811	2	0
13069	0	1
20144	0	1
8712	0	1
8159	0	4
1856	4	0
588	9	0
12414	0	6
42	12	0
5524	1	0
18340	1	0
1675	1	0
7415	0	1
5671	0	2
21254	0	1
14663	4	0
5	20	0
4	0	64
5076	0	3
21	1	0
1794	1	0
3346	0	2
7902	0	20
33453	1	0
4616	0	9
12464	15	0
2996	2	0
275	1	0
33015	5	0
31109	0	2
26790	0	13
2889	2	0
27921	1	0
12584	0	4
8374	4	0
2989	1	0
40293	0	3
13744	0	1
695	0	1
5945	0	1
9760	1	0
13712	18	0
86348	0	8
6412	0	1
482	0	1
18829	1	0
27192	2	0
17495	1	0
35804	3	0
1960	0	1
53216	0	1
63745	0	1
1340	0	1
1420	0	1
10522	1	0
874	0	1
6580	0	1
2739	6	0
2716	0	1
16798	1	0
668	1	0
176	10	0
12962	3501	0
14276	125	0
5795	0	1129
7864	0	2759
20005	0	123
328	1	0
20658	80347	25206
2695	0	125
14368	0	125
6034	47974	29501
498	0	2
78	0	1
130	0	1
133	0	1
115	4	0
3	0	3
11257	2	0
9058	250	0
5959	1	0
523	251	251
3001	125	0
3030	0	625
47	0	999
16	0	125
123	0	125
78	0	125
145	875	0
26	1124	0
2985	0	250
6002	250	0
909	0	500
3303	587	1212
52	3999	0
37	250	0
2505	0	999
2444	0	500
51	0	375
28	0	3375
1079	0	125
694	0	1
39	0	250
269	0	250
270	3389	18888
3105	0	1875
50	0	1
11496	500	0
537	3375	0
1264	125	0
34022	12	0
7813	0	1
113137	4	0
12622	0	1
29473	0	2
36121	1	0
15684	1	0
12106	0	1
15658	1	0
19701	0	16
25750	0	1
39669	0	2
25016	0	8
837	0	1
20523	0	1
5936	0	1
49669	1	0
7257	0	8
60	1	0
19378	0	2
44227	1	0
29571	0	1
13926	0	3
29309	0	34
9207	1	0
52516	0	1
713	0	1
304	0	8
32	12	0
4645	0	18
22618	2	0
5505	0	1
8384	5	0
4640	8	0
1068	0	1
11018	0	8
7233	1	0
14655	0	1
36965	0	2
34	4	0
7825	0	1
9793	4	0
4813	8	0
1624	1	0
32978	0	1
29939	1	0
10929	0	1
43674	1	0
70317	1	0
47399	0	1
112956	23541	0
9540	8	0
11185	0	1
12321	2	0
11207	0	1
3473	1	0
159	2	0
9799	0	2
5611	12	0
102	1	0
657	3	0
1	0	4
439	0	7
1	0	1
183	0	1
327	0	3
94	0	1
276	0	3
159	1	0
801	0	1
10	0	8
438	0	1
658	5	0
262	1	0
379	3	0
257	0	7
67	1	0
27	0	3
142	565	0
18	0	1
263	1	0
134	0	1
1	0	1
114	0	1
310	0	1
153	0	1
52	2	0
5	4	0
178	0	437
11	0	2244
399	1	0
154	0	1
81	4	0
59	0	10
176	0	1
442	12	0
65	0	1
105	0	3
687	1	0
350	4	0
136	1	0
21	2	0
484	0	4
268	0	1
54	0	10
71	1	0
55	0	4
154	1	0
637	1	0
84	0	1
434	3	0
323	46	0
126	1	0
569	0	1
240	1	0
460	1	0
66	1	0
795	0	2
31	5	0
55	0	1
169	0	1
66	0	1
367	0	1
201	0	3
159	3	0
206	0	17
90	0	1
88	6	0
461	0	1
81	61	0
3	0	15
205	0	10
60	0	6
1	8	0
321	4	0
148	0	1
515	0	1
22	0	1
169	0	1
573	0	2
3	2	0
84	0	1
628	1	0
64	5	0
299	0	1
250	1	0
222	0	3
575	0	1
182	0	4
123	8	0
22	0	1
162	4093851	6085410
2102	5	0
3524	0	5
8933	0	1
43973	10	0
936	5	0
2460	15	0
111	20	0
330	20	0
598	5	0
1123	1	0
29	0	52
527	0	20
214	0	1
617	0	5
13	10	0
928	5	0
2232	0	15
354	15	0
945	5	0
2607	21154	0
7	25	0
338	0	7068
804	36	3600
8387	0	3185
1	0	349
600	6619	6619
16237	2419	0
16	10667	4081
2	0	1760
9949	0	15
5237	0	5
754	0	2625
10534	7127	0
2902	0	3568
18	0	5
9138	20877	59187
1109	5	0
926	0	9430
1	0	1230
30	5	0
2081	68874	32405
416	1	0
1347	0	1
130	0	15
775	10	0
234	0	1
2793	1	0
137	0	1
395	0	10
1325	10	0
299	1	0
1064	15	0
285	0	1
417	3534	0
109	0	10
191	52986	143232
7131	0	5
3537	5	0
3563	5	0
2021	0	15
575	5	0
870	1	0
44	0	45
293	4608	34211
22	10	0
440	0	5
817	0	5
921	15	5
2695	1	0
140	10	0
606	0	1
83	5	0
10	15	0
95	0	216
1660	15	0
1498	0	5
15	0	5
1234	100342	64850
4900	0	5
16	0	5
737	0	5
6603	0	1
1177	2	0
368	10	0
202	0	15
5091	2	0
2	3	0
753	0	5
624	1	0
1917	16964	2083
687	1	0
85	0	15
200	0	5
7	0	10
3290	15	0
10772	0	5
1585	1	11
15402	15	0
686	0	5
8346	3521	3536
3494	0	25
2234	10	0
7220	0	3554
3381	20	0
4963	37454	13246
4783	16808	9563
16	0	4836
1037	2	0
6875	2416	5965
11815	5	0
6408	21292	0
5168	0	7121
825	7127	0
2294	0	1
427	0	5
1237	10	0
1361	5	0
932	0	5
1274	15	0
1318	0	5
2130	1	0
44	10	0
810	3143544	6577279
6644	0	3544
1310	10	0
811	0	15
119	5	0
292	20	0
516	0	5
42	10	0
156	0	1
504	15	0
2292	0	3554
4236	0	1
5195	0	20
112	0	1
115	0	15
567	15	0
121	0	5
339	0	1
468	5	0
716	0	15
189	0	15
987	1	0
133	15	0
1024	1	0
515	0	10
1368	0	15
354	10	0
803	0	15
119	5	0
292	20	0
516	0	5
42	10	0
661	15	0
2290	0	20
295	0	10
890	0	15
741	15	0
354	10	0
19	8	8
1497	10	0
21484	0	5
1789	0	20
1755	0	15
1117	1	0
646	0	10
3569	0	5
1780	5	0
1132	0	1
664	0	5
1772	0	10
1122	1	0
664	5	0
30	5	0
1742	10	0
1794	0	10
3568	0	5
2230	15	0
1347	5	0
3521	0	5
1291	0	8
944	0	15
647	0	1
664	0	5
30	0	5
1520	0	15
207	0	10
1122	1	0
658	15	0
1773	0	10
3563	20	0
1779	0	25
5421	15	0
1678	20	0
2225	0	15
949	15	0
380	0	25
1053	3574	0
1972	0	1
537	20	0
1703	30	0
1779	0	10
15	0	5
1727	0	30
1769	20	0
1755	30	0
1794	0	10
1740	0	30
906	10	0
878	5	0
6125	18	0
4548	5	0
10682	5	0
2493	0	1
3126	0	20
14918	5	0
680	15	0
1423	0	1
516	0	5
880	0	15
720	15	0
2869	0	15
3316	3539	0
3794	0	5
7104	0	5
3590	0	5
1725	0	5
469	15	0
61	0	5
1212	0	5
20	0	5
1785	10	0
1756	7097	0
3194	0	15
8940	3	0
7348	1	0
6412	0	7254
7200	28566682	25214933
5521	5	0
39	0	290
308	0	3559
6480	0	10
3598	5	0
1780	7132	0
1775	40	0
5	5	0
3	25	0
6363	25	0
13729	17430	2913
3225	0	16
2296	0	7258
1962	2753	14841
6922	0	2
1	2422	0
5	0	2
600	1	0
690	2417	0
5513	4837	0
1868	0	2
1301	4853	13
5660	7457	7457
8082	0	10
693	15	0
105	1	0
1002	0	10
781	15	0
122	10243	4284
812	15	0
14342	34700	368
502	15	0
14124	0	5
1247	5	0
542	10	0
51	1	0
1303	0	18712
24953	15	0
1032	0	5
7521	0	644
151	0	13575
8786	3554	0
1822	10	0
1737	0	5
16	15872	1766
34	0	10
1772	0	5
478	1	0
1304	10	0
1536	17680	0
237	20	0
138	0	10613
3252	3554	0
129	0	5
3565	0	10
3528	0	5
3219	0	3564
357	5	0
3542	0	10
530	3549	0
20671	25	0
14961	944	4478
22	0	10
15990	15	0
35279	0	31794
1092	0	15
5769	0	1
2804	898	4432
10436	1	0
6240	0	14139
750	0	1
29543	0	25
3519	25	0
5416	1	0
1645	25	0
3559	0	25
3450	0	1
60	0	25
1901	3535	0
1469	15	0
692	0	3560
2828	15	0
150	25	0
12246	40	0
1849	25	0
1644	40	0
1686	0	15
1233	1	0
494	0	20
120	3488	14047
9902	0	1
513	20	0
61	40	0
31102	0	3514
45	0	155
114	0	3609
10103	3503	0
5828	0	15
24	15	0
371	5	0
7014	5	0
1438	30	0
968	30574	2530
1241	0	1
788	5	0
389	1	0
2320	0	1
1181	1	0
737	0	17524
31560	5	0
37648	2	0
22015	0	67
10650	4	0
8	119	0
3325	0	1
11555	0	8
2759	0	10
10982	0	3
16383	18	0
37980	2	0
12768	3	0
21	0	36
1774	0	1
1087	2	0
2677	2	0
4328	12	0
928	1	0
6743	0	4
2550	1	0
6251	0	3
6451	0	1
5770	19	0
1776	0	3
2033	0	1
3697	2	0
866	1	0
6134	0	1
109	0	1
2373	1	0
1036	1	0
43	0	1
1026	2	0
1707	1	0
3695	0	1
2723	4	0
45	0	6
11	0	3
2374	1	0
4546	0	1
401	0	1
10396	2	0
7215	0	1
4831	1	0
12703	32	0
3104	0	33
22742	0	1
28566	0	1
52316	0	1
13392	0	1
1161	1	0
2146	2	0
3356	3	0
17	2	0
2040	0	1
6977	0	4
68	0	4
6	2	0
37	0	4
134	4	0
716	3	0
4172	0	1
162	0	8
1373	6	0
475	0	1
3574	6	0
42	6	0
125	38	0
1489	1251	0
1129	0	3
4424	0	6
120	1	0
466	0	2
160	47	0
31	103	0
27	29	0
715	38	2
66	0	7
9	0	17
36	0	34
2	0	8
30	7	0
14	8	0
27	24	0
1	0	1
30	0	7
12	0	9
29	16	116
10	0	1
10	4	0
12	0	2
36	0	1
22	1	0
38	0	5
6	0	1
5	0	1
12	13	1
30	0	6
6	5	0
6	62	2
6	0	1
17	61	5
13	71	17
28	18	0
16	0	1
18	22	3
17	22	23
5	1	0
13	1	0
5	1	0
8	0	17
6	8	0
24	8	0
6	1	0
13	4	0
7	0	2
6	23	9
19	8	0
34	165	7
19	55	12
9	0	5
7	5	0
23	10	12
6	1	0
26	0	4
6	5	0
38	25	9
15	3	0
1	0	4
39	0	1
19	3	0
1	0	1
25	3	0
10	1	0
30	2	0
12	8	0
5	3	0
21	3	0
29	0	5
25	17	0
2	0	2
9	3	0
9	25	1
27	0	3
61	3	0
15	9	0
78	5	0
95	0	1
50	101	15
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1668	1
56	0	5
53

chain 8087708 HG02135_chrY_random0000980 164973 + 79156 164972 HG002_chrY 62432599 - 43575590 43661327 2
21027	4	0
236	2	0
1	8	0
47	3	0
59	8	0
10120	4	0
6	25	0
7039	0	2
2531	2	0
48	0	1
1475	12	0
1529	1	0
916	4	0
2320	1	0
17908	0	1
3698	4	0
2383	3	0
9025	1	0
4016	0	1
1236	1	0
52	1	0
60

chain 7448072 HG02135_chrY_random0000980 164973 + 0 79156 HG002_chrY 62432599 + 18774491 18853552 3
242	1	0
45	1	0
97	1	0
181	1	0
24	1	0
127	1	0
30	1	0
108	0	1
155	0	1
103	1	0
18	1	0
317	0	1
40	1	0
284	1	0
18	1	0
94	1	0
260	2	0
7	1	0
307	1	0
105	1	0
510	1	0
276	0	1
134	1	0
171	1	0
313	1	0
57	1	0
51	1	0
66	1	0
99	1	0
6928	3	0
2383	4	0
3697	0	2
17908	1	0
2320	2	0
916	1	0
1529	12	0
1464	0	1
10	0	1
48	2	0
2531	0	2
7039	25	0
6	4	0
10120	8	0
59	3	0
47	12	0
1	2	0
17806

chain 3742654 HG02135_chrY 60471768 + 19592650 19632316 HG002_chrY 62432599 - 42850342 42889998 4
19965	4	0
6480	2	0
46	2	0
10499	2	0
2666