##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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1192	0	4
31	0	4
933	0	370
65	2	0
1316	0	2
67	4	0
1751	1	0
119	38	0
2231	0	4
696	20	0
189	0	4
415	0	4
4645	0	4
174	4	0
9150	1	0
1207	0	2
36	0	309
1505	0	1
709	0	76
111	28	0
512	1	0
141	0	1
2464	2	0
143	0	1
480	1	0
29	0	4
547	1	0
1096	7	0
263	0	1
1706	0	192
31	0	96
174	49	0
48	0	49
218	0	48
1830	0	1
7584	0	52
91	104	0
73	52	0
3745	0	4
10	0	9
2338	3	0
2979	0	4
10	0	4
60	308	0
28	91	0
81	959	0
93	10	0
20	176	2
55	71	0
9	26	0
321	0	6
125	6	0
76	0	2
22	2	0
192	0	4
60	0	4
1203	4	0
77	0	4
29	1	0
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302	1	0
276	0	12
493	4	0
80	20	0
103	0	4
32	4	0
14	4	0
27	8	0
32	0	4
504	4	0
172	0	4
3256	1	0
3697	0	1
170	4	0
11	1	0
12	2	0
353	0	4
131	3	0
740	0	2
401	0	4
20	0	8
882	0	3
16	0	6
893	0	2
2595	22	0
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472	0	3
7344	1	0
3966	0	4
2859	1	0
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4	0	7
13	0	4
23	0	4
39	0	7
15	0	11
25	0	4
2156	0	1
507	765	0
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294	2	0
49	21	0
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60	3	0
8	6	0
11	0	5
16	0	3
4	0	1
14	0	2
19	0	7
346	0	1
3334	0	1
1798	0	3
335	1	0
74	0	1
803	0	14
3741	4	0
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43	0	8
56	0	4
85	4	0
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58	4	0
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14	4	0
68	0	4
48	4	0
32	0	4
19	0	4
37	0	4
524	0	5
811	0	1
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95	32	0
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575	0	6
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637	0	4
11	25	9
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31	4	0
15	0	62
2	0	1
4	4	0
37	0	2
680	6838	0
18	797	8
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487	0	1
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3859	1	0
1263	0	2
871	0	1
2189	0	2
1110	0	1
1082	0	259
3078	4	16
9	0	2
37	0	2
2495	5	0
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41	0	6
484	0	1
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2973	1	0
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366	2	0
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446	1	0
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524	0	2
3531	3	0
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3749	0	80
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3690	0	107
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5	0	162
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37	21	0
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46	4	0
2612	0	1
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69	72	0
24	228	11
84	215	0
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77	7	0
154	0	1
2240	318	0
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865	2	0
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82	0	1
1	0	117
68	6	0
94	4	0
16	665	11
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363	0	3
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315	1	0
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72	4	0
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3	1	0
169	0	26
89	0	2
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78	0	25
1	5	0
11	10	0
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41	0	5
368	1	0
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81	20	0
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1	4	0
615	0	1
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1445	4	0
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24	0	4
653	4	0
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1214	0	4
29	5	0
234	1151	1109
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619	0	58
6	0	4
11	0	4
80	0	10
57	0	1
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13	4	0
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8	1	0
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21	0	1
8	3	0
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8	112	10
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14	1	3
24	30	22
16	0	6
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58	0	1
80	0	13
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113	1	0
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39	0	1
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21	65	4
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35	0	2
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8	0	4
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35	0	2
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7	3	0
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7	1	0
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3	0	4
5	0	1
10	1	0
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6	141	0
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1	0	1
84	3	0
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6	0	4
4	0	5
4	0	1
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13	0	1
2	0	2
27	13	0
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11	0	1
13	4	0
8	0	2
46	0	4
6	203	29
165	155	0
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1	0	138
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17	4	0
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6	0	7
9	0	1
13	0	24
1	0	1
8	0	1
3	0	2
6	360	29
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4	6	0
68	3	0
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12	55	25
144	0	62
8	19	0
33	0	19
9	24	0
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24	0	3
31	21	0
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8	199	32
8	27	0
1189	29	0
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57	75	1
73	1	0
16	92	20
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577	0	3
80	0	9
1133	1	0
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45	4	0
6	0	9
51	6	0
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322	0	1
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481	0	4
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1057	0	4
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6	0	12
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882	0	1
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696	0	3
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323	0	6
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2461	1	0
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3817	1	0
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35	13	11
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4752	1	0
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6228	20	0
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28	291	395
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1022	8	0
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625	14	0
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32	4	0
216	0	2
249	4	0
1230	1	0
485	0	40
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183	17	0
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43	4	0
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33	0	8
23	0	4
12	8	0
542	0	1
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584	1	0
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503	2	0
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1744	1	0
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84	3	0
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39	0	3
30	756	0
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37	0	3
2	0	3
11	0	45
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124	3	0
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44	3	0
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82	0	3
49	0	36
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35	45	0
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9	0	6
171	0	3
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50	84	0
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42	0	3
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24	540	0
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3	0	7
4	54	0
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48	4	0
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1559	17	14
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733	2	0
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540	0	296
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684	7	0
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772	12	23
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704	1	0
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1527	6	0
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31	1	36
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8	1	0
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614	8	0
4980	1	0
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62709	0	1
1349	0	2
58	2	0
22110	0	3
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4311	1	0
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5446	0	1
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8887	1	0
3949	2	0
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926	1	0
6580	6	0
5865	0	1
3069	1	0
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16633	1	0
5185	0	1
26131	5	0
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328	12	0
64	4	0
3	0	8
21809	0	2
2245	1	0
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5650	1	0
1075	0	23
5633	4	0
5816	0	1
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7793	0	1
930	2	0
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32	2	0
3757	0	35
5367	1	0
8434	0	1
3730	2	0
24	0	2
16	5	0
16	0	1
4634	10	0
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76	0	2
2283	0	1
2757	1	0
5219	2	0
2	24	0
7077	0	12
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9573	1	0
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21764	1	0
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765	0	1
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8266	0	4
4	0	16
13	3	0
1	0	3
39	0	1
74	4	0
7094	0	1
7195	2	0
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239	0	4
2497	4	0
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2205	0	2
3085	8	0
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66	4	0
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533	12	0
8736	2	0
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13	0	5
14956	1	0
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379	0	4
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30	2	0
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5716	2	0
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3278	0	4
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25	0	2
3569	1	0
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2395	1	0
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73	19	0
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1235	2	0
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14	0	1
2033	3	0
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9857	5	0
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32	0	4
8718	0	1
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6749	1	0
6447	0	8
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6	4	0
616	0	4
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52	0	2
26	0	20
1734	0	4
10922	1	0
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210	0	1
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1652	1	0
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31475	1	0
3	0	1
7	7	0
1	0	3
27343	1	0
3498	0	1
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1952	8	0
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32	2	0
2858	0	6
4078	3376	3376
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44	1	0
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7039	25	0
6	4	0
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1	2	0
236	4	0
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9557	0	2
12	0	1
1	0	1
1	0	1
3043	1	0
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2904	1	0
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44	13	4
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3523	1	0
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3	6	0
6718	0	1
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59	0	8
15578	6	0
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195	0	7
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26	0	4
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4026	2	0
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652	39673	39663
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3742	1	0
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726	1	0
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1	8	0
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162	4103145	6085410
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8736	24828	59589
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1234	100342	64850
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1707	1	0
3695	0	1
2723	4	0
45	0	6
11	0	3
2374	1	0
4546	0	1
401	0	1
10396	2	0
7215	0	1
4831	1	0
12703	32	0
3104	0	33
22742	0	1
28566	0	1
52316	0	2
13391	0	1
1161	1	0
2146	2	0
3356	3	0
17	2	0
2040	0	1
6977	0	4
68	0	4
6	2	0
37	0	4
134	4	0
716	3	0
4172	0	1
162	0	8
1373	6	0
475	0	1
3574	6	0
42	6	0
125	38	0
1489	1251	0
1129	0	3
4424	0	6
120	1	0
466	0	3
159	47	0
31	132	0
27	58	0
715	38	2
66	0	7
9	0	17
36	0	34
2	0	8
30	7	0
14	8	0
28	0	1
14	17	85
14	2	0
5	0	1
9	8	43
12	0	1
10	0	8
20	0	2
5	0	19
7	0	4
15	0	1
22	1	0
38	0	5
6	0	1
5	0	1
7	0	1
5	0	2
29	131	43
18	63	17
21	7	0
7	19	0
2	0	2
12	0	1
18	1	0
3	14	0
17	31	3
12	14	4
9	1	0
1	5	0
7	20	0
53	8	0
12	7	0
3	0	1
22	0	2
12	19	3
19	6	0
11	168	30
22	60	16
14	5	0
33	1	0
8	6	0
6	0	23
54	3	0
79	3	0
10	0	21
17	1	0
19	1	0
1	0	5
11	5	170
24	3	0
15	9	0
65	0	13
95	0	1
50	70	241
33	0	1
11	0	5
55	4	0
4	0	6
21	576	37
30	0	1
9	0	1
15	0	5
53

chain 3742654 HG02129_chrY 61212428 + 19880497 19920163 HG002_chrY 62432599 - 42850342 42889998 2
19965	4	0
6480	2	0
46	2	0
10499	2	0
2666

chain 320916 HG02129_chrY 61212428 + 15259618 15263014 HG002_chrY 62432599 - 47507067 47510475 3
619	0	12
2777

chain 1346 HG02129_chrY 61212428 + 61209446 61209460 HG002_chrY 62432599 + 62432585 62432599 4
14