##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2165320164 HG01928_chrY 52297143 + 7787 52289747 HG002_chrY 62432599 + 2 62432577 1
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1719	54	0
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27	0	2
27	33	0
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41	8	0
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58	388	0
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69	396	35
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69	1	0
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849	0	2
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10	32	261
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12	0	2
28	2	0
4	0	2
20	0	17
1	0	2
9	0	2
10	0	1
9	0	22
12	0	6
18	0	9
17	0	8
6	0	20
1	0	7
15	0	12
36	2	0
12	0	2
8	0	1
10	2	0
2	0	2
30	0	18
4	2	0
6	0	6
38	0	2
8	1	0
31	0	6
5	0	2
23	0	4
8	0	2
16	2	0
6	0	2
14	0	8
4	0	30
10	0	4
3	0	17
16	0	2
10	0	4
14	162	357
62	12	0
14	0	6
94	12	0
1530	0	1
3724	1	0
5551	0	1
269	1	0
2513	0	3
2302	255	0
21	501	0
2096	0	1
288	1	0
283	816	0
1311	0	1
3360	0	1
2761	0	22
745	4	0
614	1	0
448	0	2
329	0	2
91	3	0
168	0	22
444	0	4
761	0	1
2045	0	2
3245	0	2
8763	0	1
508	3	0
3003	0	2
280	8	5
11	0	2
859	1	0
1303	4	0
425	0	2
1272	3	0
138	0	8
1	0	1
17	0	15
58	29	70
12	2	0
10	0	12
18	2	0
19	0	52
3	0	1
158	26	0
57	0	2
110	0	16
1	0	1
75	0	14
321	10	0
6	22	0
1439	5	8
404	0	1
318	0	1
550	0	5
502	16	0
4	2	0
365	0	326
273	2	0
1460	2	0
2106	1	0
190	2	0
3481	2	0
4335	0	1
1765	0	1
3269	0	4
659	3	0
2569	0	12
19	8	0
27	0	8
43	0	12
25	0	6
6	0	2
1358	0	1
563	0	1
310	5	0
12	1	0
476	0	4
664	30	0
113	0	60
208	0	30
1090	1	0
159	0	16
4826	0	1
4733	1	0
640	0	4
1000	4	0
1451	0	1
862	5	0
2300	1	0
3050	1	0
496	7	0
3958	0	2
13	4	0
222	0	2
753	7	0
431	1	0
763	0	1
9	0	3
1774	0	4
168	28	0
11	4	0
302	4	0
17	3	0
1022	8	0
667	14	0
90	4	0
32	4	0
216	0	2
249	4	0
1230	1	0
485	0	40
15	0	2
183	17	0
2515	0	4
483	4	0
304	0	4
152	0	2
1015	4	0
28	0	7
43	4	0
258	0	4
219	4	0
33	0	8
23	0	4
12	8	0
542	0	1
2811	0	9
584	1	0
422	4	0
985	0	28
503	2	0
124	8	0
1744	2	0
3546	1	0
2	2	0
5	2	0
817	5	0
1407	2097	0
61	114	0
3	48	0
81	39	0
79	0	3
113	0	42
24	0	3
35	0	3
41	0	6
81	0	3
82	0	3
52	3	0
30	9	0
43	3	0
127	42	0
83	6	0
37	45	0
176	6	0
78	3	0
44	0	3
164	0	3
700	3	0
516	0	42
314	0	3
14313	16	0
1505	0	3
738	1	4
539	0	296
1686	0	2
1415	4	0
182	0	4
684	0	3
3548	0	1
596	0	1
1334	1	0
4472	1	0
2129	8	0
48	0	2
44	0	4
29	4	0
49	0	3
7	0	4
15	0	16
7	0	24
1941	0	77
230	231	0
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1001	1	0
3570	0	14
131	0	4
274	0	4
14	20	1
35	0	1
3	0	4
4	2	0
3234	0	4
147	0	2
1406	0	1
1647	1	0
548	0	1
15	0	1
960	0	1
1170	0	1
1547	23	0
3584	1	0
3520	4	0
7	2	0
280	0	1
189	0	172
773	3	0
1722	0	1
1054	0	1
204	0	1
2575	84	0
340	84	0
232	252	0
465	3	0
882	0	4
1622	4	0
147	0	1
1077	1	0
264	2	0
342	1	0
7095	41	0
475	0	1
160	0	2
901	1	0
11	1	0
296	1	0
2411	0	3
218	0	3
5543	4	0
229	0	4
260	3	0
128	3	0
24	30	0
78	0	4
42	2	0
68	85	82
165	257	0
36	1	0
3	2	0
19	2	0
182	0	2
112	0	4
1261	2	0
665	0	2
40	0	4
630	4	0
3908	0	3
519	0	1
1036	2	0
3540	0	1
2382	0	1
759	9	0
408	0	136
277	0	1
259	1	0
171	0	1
319	1	0
1226	1	0
476	0	1
430	3	0
1792	0	1
1921	0	2
514	1	0
141	2	0
167	0	1
2703	1	0
3375	4	0
1138	1	0
1431	0	2
314	0	2
1755	0	1
904	1	0
981	0	5
107	29	0
924	0	6
889	18	0
56	3	0
322	0	1
2714	0	3
111	297	0
264	0	3
90	3	0
987	0	3
735	0	4
1799	0	8
1684	0	2
244	25	0
23	66	0
564	2	0
10	4	0
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6619	0	1
2835	1	0
695	2	0
3771	0	1
1676	0	2
791	0	3
1065	0	1
257	1	0
211	6	0
878	4	0
23	0	14
16	0	14
7	0	76
17	4	0
25	25	0
164	2	0
198	2	0
74	0	4
25	0	29
12	0	2
6	0	2
25	2	0
17	0	2
6	2	0
10	75	0
32	27	0
4	0	4
17	50	0
38	27	0
82	0	10
19	0	6
384	0	2
1024	1	0
1202	1	0
503	4	0
633	0	2
440	0	2
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243	1	0
859	1	0
597	1	0
167	0	8
548	0	21
19	0	4
153	0	1
1082	0	2
38	4	0
45	0	2
2174	4	0
54	0	3
110	1	0
1814	4	0
59	5	0
15	0	8
132	0	4
36	0	4
33	0	4
212	0	4
1093	1	0
1584	1	0
305	0	4
518	0	3
163	12	4
50	8	0
32	4	0
281	0	4
623	0	1
51	0	121
97	41	0
156	0	41
248	40	327
57	0	41
227	0	40
168	1	0
186	42	0
301	41	0
1870	0	2
965	0	1
3459	0	4
165	0	4
1875	0	3
1120	1	0
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625	0	1
239	4	0
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671	0	30
11	0	2
24	8	0
564	0	1
7	0	1
459	0	3
2043	1	0
737	0	3
772	12	23
18	59	58
546	2	0
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22	0	16
257	0	1
631	0	1
352	1	0
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59	1	0
7	1	0
127	1	0
641	0	1
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379	0	12
38	0	8
704	1	0
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6	14	0
65	0	64
26	12	0
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94	0	1
30	0	5
36	1	0
10	28	0
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47	1	0
1	3	0
28	11	0
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3	0	15
8	0	5
5	5	0
43	1	0
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36	1	0
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48	1	0
15	1	0
31	0	12
37	0	5
11	16	0
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37	0	1
20	0	1
4	2	17
26	10	0
59	1	0
33	4	0
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27	0	1
6	12	0
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46	1	0
1	153	0
62	1	0
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46	0	3
60	13	0
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7	3	0
16	0	1
4	4	3
15	52	12
13	0	6
15	1	0
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2527	0	24
489	2	0
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64	4	0
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1527	6	0
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13	0	55
31	0	70
9	1	0
4	2	0
48	0	4
8	8	73
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31	1	36
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7	0	1
5	0	64
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8	1	0
28	0	27
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6	1	0
16	0	1
1	0	7
20	0	62
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20	13	66
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20	0	23
31	16	121
1733	0	2
1373	3	0
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199	1	0
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117	3	0
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63	14	0
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961	2	0
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181	2	0
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26	0	6
536	0	2
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2078	4	0
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894	1	0
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60	1	0
2532	16	2
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1351	0	40
299	0	80
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89	0	2
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25	1	0
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80	1	0
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34	4	0
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2121	1	0
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64	1	0
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2	0	9
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9	0	1
8	1	0
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55	0	2
82	2	0
716	70	146
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1247	1	0
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8054	0	1
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32	12	0
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662	12	0
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2954	0	3
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1249	1	0
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1345	2	0
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39	23	27
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2093	29	0
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588	4	0
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287	1	0
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281	0	1
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7577	1	0
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43	8	2
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12788	46217	46210
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66	12	0
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13	0	5
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32	52	0
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704	0	4
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1742	4	0
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4072	3371	3372
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7816	3498	0
4175	0	3483
11	0	15
4154	0	15
24	15	0
371	5	0
4402	0	3498
552	30	0
2030	5	0
3498	10	0
389	1	0
1297	0	1
195	0	1
33	5	0
14	0	1
1576	0	14027
3469	5	0
29586	0	2
3121	5	0
13996	1	0
23652	0	2
32730	0	4
2809	1	0
520	0	1
5649	4	0
26	1	0
5880	0	2
2765	0	4
10988	0	3
11089	1	0
5291	3	15
34745	0	1
214	25	0
3008	2	0
13569	0	1
1029	0	1
1087	2	0
2677	6	0
4328	12	0
928	1	0
6205	1	0
29078	1	0
27103	0	2
10395	2	0
24750	0	16
3088	0	33
22742	0	1
17049	0	2
63832	0	1
29173	2	0
5226	1	0
1856	0	1
11571	58	0
27	58	0
745	6	0
109	0	6
128	0	45
41	1	0
22	8	26
30	0	1
10	0	1
15	2	0
3	0	1
10	4	0
48	0	54
3	1	0
6	0	5
6	0	1
4	5	0
1	0	1
12	77	51
24	155	35
21	7	0
23	0	1
18	24	3
17	10	0
3	1	0
15	8	0
1	3	0
9	1	0
1	5	0
48	8	0
12	8	0
31	4	0
7	0	2
6	23	9
43	8	0
9	186	8
22	57	9
21	5	0
33	1	0
8	6	0
36	5	0
46	1	0
1	20	0
15	3	0
64	3	0
27	3	0
57	3	0
21	3	0
59	17	0
2	0	2
9	3	0
9	25	1
27	0	3
61	3	0
15	9	0
78	5	0
95	0	1
50	101	15
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1668	1
56	0	5
53

chain 11518879 HG01928_chrY 52297143 + 24700044 24829884 HG002_chrY 62432599 - 38401468 38539790 2
63	0	1
35	0	1
15477	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
715	0	4757
5559	1	0
1126	7152	0
7	1	0
2251	0	1
4310	1	0
1457	0	11
1558	1	0
3724	1	0
3316	4	0
3200	0	1
1162	0	2
860	0	1
6022	0	1
3892	1	0
195	0	4
4134	15	0
740	0	2
911	2	0
2516	0	1
1668	2	0
2015	0	1
4192	0	1
32368	0	29
201	1	0
95

chain 4355407 HG01928_chrY 52297143 + 17718874 17765090 HG002_chrY 62432599 - 45214480 45260689 3
13217	4	0
13204	1	0
3006	4	0
2440	2	0
2497	0	4
11841

chain 6804 HG01928_chrY 52297143 + 24838023 24838183 HG002_chrY 62432599 - 38539790 38542814 4
2	0	2864
158

chain 2683 HG01928_chrY 52297143 + 13082588 13082616 HG002_chrY 62432599 + 12511308 12511336 5
28