##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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1727	0	32
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1682	170	0
131	510	0
754	1	0
1457	0	2
29	4	0
1674	3	0
490	0	1
76	0	2
359	56	0
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831	2	0
1870	2	0
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225	0	9
112	0	4
854	24	0
9	1	0
1	13	0
113	2	0
38	0	2
1025	0	4
1735	1	0
3088	0	18
442	1	0
58	0	1
824	1	0
52	3	5
54	0	8
17	0	27
7	40	0
2088	4	0
408	20	0
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1036	0	2
876	1	0
2759	0	1
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171	308	0
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1105	4	0
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354	0	3
336	1	0
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2532	1	0
644	0	4
738	64	0
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39	24	0
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3	17	0
696	0	1
588	0	1
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84	0	45
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276	0	45
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382	0	4
317	0	6
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318	2	0
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88	4	0
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633	0	4
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8	0	2
1	0	19
5	0	4
27	6	0
60	0	4
1	0	2
26	3	1
56	0	27
1	0	2
75	27	0
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32	0	18
13	0	4
41	8	0
8	3	0
5	4	0
2164	0	370
65	2	0
571	0	3
1	0	55
5556	20	0
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415	0	8
4819	8	0
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36	0	309
2402	28	0
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480	1	0
30	0	3
1643	7	0
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63	1	0
57	0	192
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108	1	0
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668	0	8
3341	2	0
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431	0	2
907	12	0
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13	0	4
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39	0	7
15	0	11
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693	0	1
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60	3	0
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3	0	12
9	0	3
4	0	1
14	0	2
19	0	7
346	0	1
2365	269	0
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334	0	1
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1240	1	0
74	0	1
4558	4	0
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43	0	8
4	4	0
29	4	0
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71	4	0
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14	4	0
68	0	4
44	0	4
32	0	4
19	0	4
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524	0	5
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12	0	1
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17	0	36
575	0	6
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2	0	1
4	4	0
37	0	2
680	4208	0
18	534	8
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896	0	6
3859	1	0
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173	1	0
11	0	4
93	0	8
22	4	16
9	0	2
3000	0	5
2675	1	0
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485	1	0
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4	0	1
1109	0	147
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67	0	295
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368	0	1
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311	0	2
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5389	3	0
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1591	1	0
823	0	200
393	0	520
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379	3	0
68	0	107
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107	0	162
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271	0	3
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143	0	1
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7	0	4
177	0	1
579	4	0
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3206	0	1
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1268	1	0
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32	2	0
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5	0	12
147	2	0
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2271	343	0
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16	13	0
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89	0	2
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49	1	0
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108	0	15
67	10	0
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49	46	6
34	685	0
63	2	0
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59	50	0
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8	2	0
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1	4	0
85	10	0
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58	2	0
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83	4	0
27	2	0
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427	797	796
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129	0	2
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21	0	4
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6	1	0
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74	0	2
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197	0	4
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85	0	2
33	0	49
7	1	0
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8	0	20
3	0	12
6	0	49
86	0	61
3	0	1
8	0	168
178	171	181
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31	105	0
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5	0	3
8	0	5
8	0	8
182	0	62
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58	45	0
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8	27	0
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52	38	2
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13	0	5
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878	5	0
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1562	3	0
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330	0	4
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24	0	62
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191	0	58
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191	1	0
731	3	0
4	0	1
169	0	2
1559	17	14
810	0	1
307	0	1
2880	0	32
215	0	1
733	2	0
1267	0	1
1	0	1
540	0	296
1199	1	0
472	1	0
15	0	2
1415	4	0
182	0	4
684	5	0
3551	0	1
562	0	13
21	0	1
1334	1	0
4472	1	0
2129	8	0
48	0	2
44	0	4
29	4	0
49	0	3
7	0	4
15	0	16
7	0	24
1941	0	77
230	231	0
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341	8	0
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1136	1	0
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7	2	0
280	0	1
115	0	24
50	0	172
773	3	0
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3612	1	0
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70	0	4
3	0	4
1104	0	10
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2568	1	0
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5469	1	0
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693	3	0
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229	0	4
183	0	6
71	3	0
344	0	82
45	0	86
1642	21	11
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743	4	0
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827	0	4
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2174	8	0
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110	1	0
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1093	1	0
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623	0	1
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97	41	0
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57	0	41
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564	0	1
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772	12	23
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127	1	0
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704	1	0
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65	32	0
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48	0	30
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4	0	10
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15	21	16
59	1	0
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13	4	0
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47	0	1
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29	32	0
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1	169	0
62	1	0
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7	3	0
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15	43	45
9	0	7
2519	0	24
489	2	0
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64	4	0
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1527	6	0
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9	1	0
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8	8	73
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31	1	36
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7	0	1
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6	1	0
16	0	1
1	0	7
20	0	62
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20	13	66
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20	0	36
18	16	121
1733	0	2
1373	3	0
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199	1	0
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63	14	0
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704	9	0
32	0	4
965	3	0
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181	2	0
17	0	6
26	0	6
536	0	2
966	0	2
2078	4	0
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2532	16	2
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18	1	0
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79	0	2
6	0	2
42	2	0
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53	0	2
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89	0	2
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89	2	0
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16	2	0
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93	2	0
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134	0	8
1677	1	0
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9	1	0
7	36	35
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67	10	27
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67	1	0
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4	0	39
69	3	0
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55	0	2
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716	70	146
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14	0	1
49307	0	1
38150	0	15
8	0	4
10410	0	6
27	0	3
2	0	2
29222	0	6
90196	0	2
17557	2	0
27	8	0
3131	12	0
10	18	0
485	1	0
9382	0	14
27	0	8
18	1	0
53	0	8
4202	1	0
2931	0	2
26	0	8
846	0	1
2291	0	4
1144	1	0
2431	0	1
5940	0	1
422	4	0
112	0	10
1941	0	2
985	1	0
1632	18	0
2566	12	0
840	0	1
1505	3	0
786	32	0
5823	0	1
4052	6	0
43	0	1
52	8	0
4205	0	1
391	18	0
2568	4	0
3135	0	32
9863	0	4
101	0	2
4116	0	40623
6058	1	0
5675	0	3
4	0	20265
4318	2	0
117	4	0
20167	0	2
7265	6	0
13106	2	0
20271	4	0
10317	0	16
1130	1	0
8750	0	4
26	0	2
87	2	0
21	1	0
1941	2	0
2618	18	0
2540	0	2
26	6	0
842	0	1
1505	3	0
658	1	0
124	32	0
1940	1	0
1284	1	0
2327	3	0
258	0	13
356	0	1
2000	5	0
1303	0	1
491	0	4
7170	10	0
5071	0	1
1607	0	1
5746	3	0
620	0	2
106	2	0
18438	5	0
1696	6	0
98	0	4
7025	1	0
989	1	0
1505	0	3
787	28	0
1112	0	1
8745	2	0
100	4	0
10319	0	8
8192	5	0
1835	2	0
4559	18	0
2568	4	0
3002	1	0
3348	1	0
2117	1	0
210	3	0
269	1	0
358	1	0
3304	0	1
422	6	0
2	0	2
108	0	6
6982	1	0
117	2	0
16	2	0
6	0	2
3138	22	0
3545	0	1
2278	1	0
1570	0	3
1895	3	0
191	0	1
396	0	6
93	4	0
4055	4	0
156	1	0
2925	0	2
872	0	1
1505	3	0
786	32	0
9	0	2
1926	1	0
1440	1	0
1961	0	1
471	0	13
356	0	1
3794	0	4
7158	0	4
6	4	0
846	1	0
1505	0	3
2723	0	1
3402	1	0
470	11	0
1	2	0
356	1	0
3696	6	0
4678	0	18
2556	2	0
26	2	0
10	0	6
830	1	0
1505	0	3
786	0	32
5340	1	0
470	11	0
1	2	0
356	1	0
2000	0	5
1303	1	0
7663	0	10
8956	1	0
2361	5	0
6006	1	0
2931	0	2
26	4	0
842	0	1
1505	3	0
786	36	0
1937	1	0
3402	0	1
471	0	13
356	0	1
3303	0	1
390	0	6
101	0	2
4615	18	0
2546	0	2
855	0	1
1508	3	0
1930	2	0
2424	0	1
1797	0	1
465	0	12
9	0	1
355	0	1
3302	0	1
414	2	0
25	0	1
43	0	18
1973	0	2
984	1	0
1241	0	1
2966	2	0
24	0	2
2	4	0
4239	1	0
815	0	1
3871	12	0
364	1	0
2015	5	0
1287	1	0
414	0	103
3	0	12
4013	0	4
3110	0	2
11313	0	5
1716	4	0
78	2	0
4586	0	18
2439	1	0
117	0	2
26	4	0
3131	24	0
1953	2668	104118
1205	1	0
1570	0	3
788	0	5
1691	0	6
4312	1	0
2814	0	1
989	0	1
1505	3	0
1927	1	0
4227	0	1
472	0	14
355	0	2
3794	0	4
4211	0	1
2948	2	0
30	0	4
3112	0	4
5367	1	0
471	13	0
356	1	0
3114	0	4
606	0	2
68	2	0
3979	13	101520
3037	1	0
132	0	2
29	6	0
2331	3	0
793	16	0
1103	0	1
8792	4	0
110	2	0
6982	0	1
117	0	2
24	24	0
848	0	1
2294	6	0
9	12	0
1120	1	0
4227	0	1
471	0	13
356	0	1
3699	2	0
97	0	18
122	1	0
3360	0	3
3639	0	2
14	0	4
6	0	2
18	0	6
846	1	0
2336	4	0
1103	0	1
4697	11	0
1	2	0
3100	0	3
952	0	2
45	0	1
54	0	12
123	0	1
3360	3	0
1101	18	0
1766	0	2
764	6	0
26	0	4
22	0	8
1672	1	0
1453	4	0
5861	1	0
2378	0	5
1658	0	2
7272	2	0
16948	1	0
43	0	4
12728	1	0
5260	2	0
11134	4	0
2316	0	1
3415	3	0
17955	0	1
35177	14	0
32	0	8
29209	0	1
5473	1	0
546	0	1
10062	2	0
1194	0	8
2182	12	0
9988	0	3
73158	0	2
33965	2	0
5263	0	8
20588	0	29
3383	31	0
51969	4	0
175	0	2
1143	1	0
4296	0	1
10737	1	0
16593	2	0
4319	9	0
27213	0	4
14825	0	4
34135	2	0
29546	0	12
27181	0	2
2079	0	1
2256	0	1
22063	6	0
39330	1	0
10501	1	0
23	3	0
11950	1	0
11358	1	0
34944	0	4
350	0	2
5561	5	0
35557	1	0
11025	892100	326879
13483	0	10
575	5	0
1111	0	10
297	5	0
573	5	0
27	5	0
857	0	5
744	0	10
917	0	5
849	5	0
850	10	0
87	0	5
844	5	0
196	15	0
1950	5	0
347	0	5
1841	0	10
105	0	5
984	5	0
265	10	0
896	0	5
595	0	5
630	5	0
4030	0	20
2227	10	0
1568	0	5
843	5	0
4067	0	15
337	0	5
383	0	5
2063	0	5
3390	0	5
2220	0	10
383	0	5
282	10	0
143	5	0
881	0	10
758	5	0
757	1876	0
281	0	5
5439	0	5
1756	5	0
863	5	0
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1349	0	10
258	5	0
474	0	5
1332	0	5
1226	0	5
1784	0	10
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1615	0	5
514	5	0
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340	10	0
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244	5	0
2525	0	5
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3884	0	5
2540	0	5
1178	5	0
352	0	5
43	5	0
4830	0	5
3038	0	5
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409	0	5
2205	5	0
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879	0	5
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397	5	0
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807	5	0
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3945	0	5
207	0	5
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232	5	0
1732	0	5
2054	10	0
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2876	0	5
442	5	0
242	0	5
6668	5	0
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138	0	5
736	5	0
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892	10	0
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2681	10	0
618	0	5
8591	0	10
2358	0	5
2139	0	5
46	5	0
1304	10	0
624	15	0
1867	0	5
1039	5	0
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1707	1	0
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885	0	5
23455	20	0
4053	0	5
24741	0	5
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1331	0	5
2652	0	10
1440	10	0
380	25	0
326	0	5
287	5	0
702	5	0
1048	5	0
1317	0	5
9464	10	0
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597	5	0
30	5	0
2281	5	0
1154	0	5
5867	0	5
2742	10	0
138	0	5
10723	0	25
1165	0	10
1198	0	10
21	0	5
1428	0	10
16072	0	5
1561	5	0
9448	0	1
6415	3	0
22	0	2
13360	0	2
37249	1	0
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5938	1	0
56479	0	2
2	0	2
16899	1	0
1158	0	2
46903	0	1
7139	0	1
39454	0	1
5095	0	5
264	0	10
1801	0	25
1421	5	0
44	0	5
297	0	5
1898	0	5
541	10	0
235	10	0
93	0	5
97	0	10
305	5	0
227	0	5
383	10	0
878	0	5
619	5	0
85	20	0
86	0	5
406	0	5
302	5	0
746	0	10
368	0	5
177	0	5
535	5	0
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477	0	5
374	5	0
27382	0	1
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8858	4	0
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5571	0	2
14	0	1
1	0	2
12538	0	1
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4598	3	0
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265	5	0
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5523	0	5
1630	10	0
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5594	0	5
572	10	0
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4304	898	23336
1017	5602	0
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563	5	0
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50	5602	0
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628	0	5
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19	5	0
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25	10	0
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603	25	0
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2717	5	0
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1754	0	11080
3851	0	5
30031	0	5
12387	1378	0
81	15	0
906	0	1378
10	0	1842
3	0	5
8	5981	0
121	19097	12166
995	0	5
1788	0	10
198	6	0
19	0	5
68	1	0
209	0	1
801	10	5
556	5	0
12	15	0
63	1	0
818	12307	22120
10	5	0
149	5	0
595	0	1
381	5	0
381	10	0
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1221	0	5
1833	1	0
2270	1373	0
547	30	0
2197	0	8262
6903	0	4
208	0	1
2511	0	5
1373	5	0
299	15	0
2195	1	0
196	5	0
40	0	15
336	43028	150273
6252	22583	29426
13162	5	0
12916	5	0
3625	25	0
33	5531	0
5562	0	10
1975	22299	0
3341	5	0
296	0	10
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12982	0	5
3213	0	10
401	0	5
244	0	10
1112	0	10
3953	36658	8892
2004	0	5
1250	0	3
1109	20	0
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749	0	10
5007	0	5
10546	3	0
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1615	5558	0
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2710	5	0
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5743	0	20
509	0	5
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526	0	5
748	0	1
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2650	5	0
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785	1	0
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305	0	369
1598	0	10
731	0	5
510	25	0
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790	10	0
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838	5	0
721	5	0
3193	0	15
1310	0	10
325	11472	10781
339	0	20
29	26541	0
1107	0	5
793	5	0
1245	0	5
1831	10	0
1975	0	5
3854	5	0
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2003	5	0
3872	0	15
1747	15	0
1993	0	5
1846	0	10
1983	25	0
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2023	10	0
3812	0	10
1751	5	0
675	0	15
1349	5	0
1782	10	0
1998	0	5
1803	5	0
579	5	0
1427	5	0
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1998	0	5
1831	5	0
1998	5	0
16	11378	0
17	35	0
1775	5	0
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47	0	5
1751	20	0
1405	0	3831
603	0	5
5677	0	5
9621	0	5
3676	0	5
3888	0	5
3695	10	0
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491	5	0
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195	5	0
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698	0	5
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301	0	15
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6478	5	0
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2526	5	0
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853	5	0
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173	5	0
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5559	5	0
807	5	0
376	1	0
19	0	5
4963	0	10
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4460	5	0
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1840	0	5
76	5	0
958	0	5
10	0	15
220	20	0
25	65	0
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702	0	5
2692	5	0
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862	5	0
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1210	10	0
195	10	0
1533	10	0
1659	5	0
9432	1	0
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2223	1	0
7495	0	1
14230	3	0
32	0	4
6600	1	0
1969	0	4
4062	4	0
3948	4	0
696	2	0
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2354	0	1
10078	3	0
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5363	0	1
2848	14	0
618	2	0
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949	0	4
3719	1	0
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24760	3	0
5542	0	2
1134	0	4
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1951	0	2
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3435	0	9
929	8	0
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9672	1	0
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122	8	0
84	4	0
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8033	1	0
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355	0	1
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465	4	0
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1355	4	0
145	0	4
63	4	0
11987	0	5
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428	0	1
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118	0	1
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27080	3	0
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32196	1	0
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683	2	0
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3521	1	0
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51	8	0
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12965	3399	3411
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638	1	0
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3712	2	0
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17806	3457	3457
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12	14	4
9	1	0
1	5	0
7	22	0
41	6	0
12	7	0
5	0	1
6	7	0
3	0	1
15	4	0
7	0	2
5	23	10
19	6	0
12	0	1
11	184	17
22	41	0
10	1	0
20	5	0
9	1	0
24	1	0
8	6	0
36	5	0
46	1	0
1	20	0
15	3	0
51	0	2
6	14	5
27	3	0
10	1	0
11	1	0
14	4	0
5	1	0
11	15	6
4	0	1
16	3	0
52	0	1
6	63	23
27	0	3
15	3	28
18	3	0
15	9	0
4	0	1
17	0	1
3	0	1
51	4	0
59	0	8
28	0	1
1	0	1
48	94	15
11	0	2
4	0	25
14	0	1
35	2	0
29	4	1
73	4	0
24	0	1
41	7	0
70	4	0
30	0	1
16	0	2
11	0	1
6	1596	1
31	1	0
9	0	1
71

chain 11096225 HG01596_chrY 69976226 + 24454705 24608132 HG002_chrY 62432599 - 38399346 38539790 2
2221	1	0
15478	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
7714	0	4757
650	34647	6035
7	1	0
2251	0	1
4310	1	0
1457	0	10
1559	1	0
3724	1	0
1300	1	0
2016	4	0
3200	0	1
2024	0	1
9915	1	0
195	0	8
4130	3	0
740	1	0
913	4	0
4185	1	0
2015	0	1
3438	4	0
33123	0	25
205	1	0
95

chain 327277 HG01596_chrY 69976226 + 19118191 19121648 HG002_chrY 62432599 - 43575590 43579047 3
3457

chain 320916 HG01596_chrY 69976226 + 15186624 15190020 HG002_chrY 62432599 - 47507067 47510475 4
619	0	12
2777

chain 6804 HG01596_chrY 69976226 + 24616271 24616431 HG002_chrY 62432599 - 38539790 38542814 5
2	0	2864
158