##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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6	1	0
119	111	649
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7	0	8
160	0	4
79	8	0
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434	0	9
3	0	706
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37	8	0
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1643	7	0
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4	1	0
12	0	55
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69	12	31
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1	0	1
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2	0	1
57	86	84
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301	673	673
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1334	8	0
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71	178	6
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161	1	0
1620	5	0
360	0	5
9	0	5
202	0	25
574	0	1
540	5	0
559	23	13
1446	0	15
1869	15	0
292	0	5
1168	0	5
151	5	0
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928	0	15
2290	0	5
358	15	0
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574	1	0
1132	5	0
3049	0	1
530	5	0
4	0	5
1912	0	40
131	1	0
836	0	15
214	0	15
1473	11046	0
693	33333	37
127	10	0
77	0	25
21	0	5
202	5	0
227	2	0
339	0	3
78	1	0
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225	5	0
20	5	0
552	10	0
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215	10	0
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1548	0	10
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4418	0	3
523	0	5
581	30	0
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894	0	5
1773	10	0
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364	11109	0
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148	10	0
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528	0	10
42	5	0
993	10	0
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327	1	0
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590	0	5
7	0	5
1001	0	10
911	0	14
1372	0	1
327	0	1
1055	5	0
239	15	0
22	25	0
534	0	5
6622	5553	0
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6741	5	0
275	0	20
1284	1	0
515	0	5
3535	10	0
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263	7550	0
18	20	0
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1861	5	0
789	10	0
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483	10	0
49	5	0
305	0	369
1580	0	5
1259	25	0
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1259	15	0
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795	25	0
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37	0	10
325	3840	10781
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426	0	15
695	0	5
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69	0	15
1245	0	5
365	0	3811
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679	0	15
84	0	15
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24	0	2423
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341	3731	3822
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673	15	0
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1244	5	0
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3934	34310	25802
484	0	25
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6478	0	5
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3384	5	0
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6054	0	10
1431	0	1
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31	0	10
8563	0	4
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3715	2	0
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5512	0	1
783	2	0
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968	0	33
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81	8	0
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28	0	4
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96	4	0
49	0	4
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7050	1	0
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773	1	0
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6085	0	1
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109	1	0
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118	0	1
50	0	3
253	2	0
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161	1542	0
20433	1	0
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8933	1	0
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916	2	0
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32202	1	0
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4068	5	0
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48	1	0
3895	2	0
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45	8	0
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59	0	4
179	0	6
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330	15	0
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79	0	4
5975	0	4
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9631	0	15
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351	2	0
3965	0	3
1384	4	0
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1131	3411	3411
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287	1	0
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56	2	0
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314	21	0
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24	0	1
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161	7	0
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3519	4	0
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8933	1	0
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324	12	0
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928	2	22
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5	9	0
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2281	0	1
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8254	4	32
13	3	0
1	0	3
39	0	1
74	8	0
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8	0	1
52	4	0
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1078	2	0
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379	10	0
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17	4	0
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75	4	0
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2033	1	0
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48551	4	0
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1952	2	0
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4076	3379	3379
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598	196124	39663
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3604	0	20
2849	0	20
4280	5	0
3516	0	10
1815	5	0
1587	0	1
172	10	0
3386	1	0
156	0	20
1573	0	3549
7726	0	1
909	5	0
637	0	3559
1177	0	5
830	1	0
961	10	0
386	0	3574
3126	5	0
1809	12364	1712
63	0	5
3	25	0
6363	25	0
13729	12592	2913
7108	0	4
7645	0	9671
182	2	0
2632	0	1
6867	0	2
1414	2	0
994	3	3
607	1	0
690	2417	0
14357	36953	38068
1418	0	5
14148	3554	0
5178	0	371
19298	0	10
21011	15	0
1032	0	5
6359	0	17147
100	10	0
1507	0	1
189	0	3547
1857	0	15
4	0	5
467	0	1
2042	0	7
8	24054	2767
1796	0	15
5	0	5
3555	15	0
138	0	10613
1634	0	10
1732	5	0
5	10	0
26	10	0
7082	0	10
168	0	7113
1638	10	0
1432	0	10
320	0	5
1747	5	0
1768	0	3554
19	10	0
1705	60294	31848
9084	14372	10823
13911	11416	6604
5398	60255	99215
16826	25	0
3467	0	1
1948	1	0
5204	0	25
392	0	10
3969	185	3705
9430	0	15
150	0	25
5172	0	25
8	0	15
1656	15	0
8237	1	0
494	0	20
74	0	25
14	4123	28603
44570	3503	0
9731	5	0
909	0	3498
552	30	0
2030	10	0
389	1	0
1297	0	1
245	4	0
1566	5	0
389	1	0
1527	5	0
950	0	5
1020	1	0
737	0	17524
807	4	0
10353	1	0
398	2	0
36	6	0
4	0	4
22	1	0
30	0	3
87	1	0
20	0	5
3	2	0
44	2	0
84	2	0
443	0	22
12	0	2
58	5	0
197	0	3
146	0	1
584	1	0
226	0	14348
3618	5	0
37648	0	2
8783	30	0
23947	0	4
14885	0	8
2759	0	3
10989	0	3
16383	14	0
34972	5	0
21372	4	0
40539	1	0
27103	0	1
10396	2	0
50629	0	1
28177	3	0
62993	1	0
18887	2	0
7082	0	1
12343	6	0
99	10	16
236	0	10
1	0	2
43	0	1
26	2	0
3	0	1
10	4	0
20	8	0
30	26	20
28	7	1
9	0	1
19	0	1
7	85	61
24	1	0
6	1	0
7	37	38
9	0	2
12	0	1
8	0	39
6	14	4
13	0	1
13	1	0
8	0	17
49	4	0
7	0	2
5	0	3
2	0	589
9	3	0
15	9	0
4	0	1
17	73	443
35	4	0
70	4	0
4	0	6
21	551	37
56	0	5
53

chain 339220438 HG01530_chrY 48089256 + 6247679 10097593 HG002_chrY 62432599 - 52562439 56521946 2
17919	0	4
43	1	0
12665	2	0
11534	2	0
123	229075	5831
6265	0	1
830	0	8
22	0	4
16	0	2
4	0	2
2	6	0
2923	1	0
710	3	0
3360	0	1
131	0	4
100	0	2
3699	1	0
356	3	0
1	11	0
470	1	0
4227	0	1
1102	0	6
823	0	3
1505	1	0
846	4	0
20	0	20
2	0	8
117	1	0
7025	0	2
70	2	0
7970	0	1
1937	0	16
786	0	3
9480	6	0
110	4	0
420	1	0
3661	0	1
3885	0	1
5052	2	0
2577	18	0
249	0	121806
153	0	1
4199	0	16
51	0	1
29	6	0
966	0	3
2745	0	1
357	0	2
3885	0	1
824	1	0
1102	2	16
9	0	14
3134	0	4
26	2	0
117	0	1
2439	18	0
4562	0	16
8	4	0
51	0	1
51	0	4
1691	0	5
2002	0	1
356	0	13
471	0	1
722	2668	104118
1944	2	0
9	26	0
783	3	0
1505	0	1
842	6	0
26	0	2
8954	0	5
2000	0	1
356	0	2
1	0	11
470	0	1
3402	1	0
1937	32	0
786	3	0
1505	0	1
842	4	0
22	0	2
2935	1	0
4168	0	40601
41	0	6
101	0	6
390	0	1
3662	1	0
3885	1	0
1937	30	0
3134	6	0
26	0	2
117	1	0
6982	2	0
112	2	0
424	0	1
1301	5	0
11317	0	10
7170	8	0
103	2	0
1693	0	5
2000	1	0
356	2	0
1	11	0
470	1	0
3402	0	1
1937	0	32
786	0	3
1505	1	0
830	0	2
40	2	0
2556	0	18
4678	2	0
9862	24	0
6098	1	0
4209	0	6
2580	0	3
1570	1	0
2444	1	0
1440	1	0
5069	0	6
26	0	2
3069	0	20277
1902	0	20
2108	6	0
118	2	0
4084	0	1
269	3	0
210	1	0
2117	1	0
3348	1	0
3002	4	0
7127	4	0
1835	5	0
8192	0	8
10319	4	0
100	2	0
8745	0	1
1112	18	0
787	0	3
1505	1	0
989	1	0
7025	0	4
98	6	0
1696	10	0
14425	4	0
4013	6	0
106	0	2
620	3	0
3468	1	0
2278	0	1
1607	0	1
5071	10	0
800	0	2
6368	0	4
98	2	0
393	0	1
1303	5	0
2000	0	1
356	0	13
258	3	0
2327	1	0
1284	1	0
1940	20	0
124	1	0
658	3	0
1505	0	1
842	6	0
26	0	2
2556	18	0
2602	2	0
1941	1	0
21	6	0
87	0	2
26	0	4
8750	1	0
1130	0	16
10317	2	0
20271	2	0
13106	6	0
27421	6	0
109	2	0
4339	0	20265
4	0	3
5675	1	0
6058	0	40623
4116	0	2
86	0	4
9878	0	32
3135	2	0
2584	18	0
375	0	1
4205	6	0
52	0	1
43	6	0
15590	18	0
4544	0	4
118	2	0
9943	2	0
3144	0	2
5186	2	0
1981	0	2
112	0	8
9867	18	0
10	2	0
20715	0	2
23660	2	0
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27	0	6
10432	0	5
38150	0	1
49307	0	1
14	1	0
5	0	2
1	0	1
53	6	0
6	0	12
62	0	3
51	0	12
67	6	0
2635	1	0
12846	0	2
6601	10	0
58131	1	0
12508	1	0
3749	0	14
4119	4	0
21169	0	3
9735	1	0
50975	0	1
6452	1	0
8455	2	0
1420	0	4
67	0	88
104	66	0
15790	0	2
1696	4	0
16471	0	2
13047	3	0
10426	0	1
16702	0	8
1850	0	2
3663	0	12
177	0	1
9938	2	0
6232	1	0
38587	2	0
18399	0	2
8312	0	1
6559	1	0
33229	0	2
18890	2	0
2488	6	0
20398	0	52
117	26	0
10671	8	0
31335	0	1
21916	1	0
29742	0	6
8394	24	0
45519	0	6
140	12	0
109307	4	0
6052	4	0
86	16	0
36801	0	1
14097	0	1
6925	1	0
3955	0	1
12745	4	0
10368	0	1
8038	5	0
49	0	4
5519	1	0
24942	0	24
26	46	0
2	2	0
8	22	0
6271	0	1
2652	0	1
43025	0	1
7511	0	1
4950	1	0
9811	0	1
36184	0	1
44565	0	1
13643	0	1
57902	2	0
35768	16	0
95	0	8
60575	1	0
41025	4	0
11028	0	1
1702	8	0
53314	0	6
20871	0	5
29702	0	2
26392	1	0
19939	1	0
16017	0	2
18460	0	1
295	1	0
3738	38	0
28420	0	4
18600	1	0
2222	0	1
8650	6	0
12943	0	50
746	300	0
177	0	75
25	0	50
28417	4	0
8426	16	0
9537	1	0
13698	0	2
8380	0	4
8368	3	0
16347	0	1
7692	46	27
18	2	0
48216	8	0
86	0	4
130	0	4
36147	0	1
352	0	20
24268	2	0
12284	0	1
2426	0	1
8606	0	3
1453	0	2
14937	2	0
24915	0	1
19281	2	0
29	0	2
18583	1	0
41022	2	0
3937	0	4
21681	0	1
4501	0	8
250	0	1
1372	0	1
66932	3	0
15753	1	0
3445	0	1
35866	0	2
29	0	2
5113	1	0
20008	0	1
38219	1	0
31270	0	1
50462	1	0
23657	0	1
3606	1	0
23962	0	1
19387	0	1
2839	0	1
12973	1	0
37502	1	0
53702	0	1
33167	1	0
55800	0	1
2114	2	0
93216	0	6
11393	0	2
5775	0	2
3993	0	1
10634	4	0
50837	0	4
63	0	16
31	0	12
1597	8	0
10875	1	0
101475	2	0
2479	0	4
1159	0	10004
4052	19	11
48	0	4
12214	0	9
2308	0	3
5864	0	27
113	0	2
28	0	3
27	0	3
252	29	0
41	29	0
4770	0	1
11167	0	1
4344	0	12
1594	4	0
5732	8	0
17684	1602	0
322	0	1
2755	2	0
1755	0	1
3328	28	0
59	2	0
43	0	2
26	0	6
2	4	0
172	8	0
176	0	1
364	0	1
1701	0	1
999	0	2
687	4	0
1023	0	14
306	1	0
4009	0	1
1400	0	4
32	1	3
886	0	2
320	0	1
375	2	0
2675	20328	0
8061	0	1
285	19	0
569	1	0
1721	0	4
311	0	1
311	1	0
292

chain 14788950 HG01530_chrY 48089256 + 19769950 19926634 HG002_chrY 62432599 - 42733316 42889998 3
7730	0	1
19323	2	0
4754	0	2
6931	1	0
5681	0	1
25922	1	0
1722	1	0
86	0	1
1312	1	0
16236	1	0
3742	0	2
133	4	0
14655	0	2
83	2	0
8095	0	10
20567	4	0
6478	0	2
46	4	0
10499	2	0
2666

chain 3719813 HG01530_chrY 48089256 + 19730517 19769944 HG002_chrY 62432599 - 42850342 42889761 4
19965	4	0
6478	0	2
46	4	0
10499	2	0
2429

chain 3058429 HG01530_chrY 48089256 + 22295325 22327624 HG002_chrY 62432599 - 40507615 40539913 5
6287	0	1
4953	1	0
1362	1	0
19695

chain 427764 HG01530_chrY 48089256 + 23628489 23633000 HG002_chrY 62432599 - 39338719 39343231 6
2490	0	1
2021

chain 372672 HG01530_chrY 48089256 + 26845879 26849824 HG002_chrY 62432599 - 36078953 36082898 7
3945

chain 322611 HG01530_chrY 48089256 + 15109908 15113316 HG002_chrY 62432599 - 47507067 47510475 8
3408

chain 2683 HG01530_chrY 48089256 + 12723641 12723669 HG002_chrY 62432599 + 12511308 12511336 9
28

chain 1346 HG01530_chrY 48089256 + 48086724 48086738 HG002_chrY 62432599 + 62432585 62432599 10
14