##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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43	0	8
4	4	0
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68	0	4
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37	0	4
524	0	5
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27	1	0
554	20	0
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8	2	0
13	0	4
906	789	0
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316	0	1
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2534	5	0
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484	0	1
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45	135	0
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58	27	42
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234	4196	4187
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98	1	0
44	226	76
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12	240	19
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13	546	75
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1753	0	9
46028	0	6
22101	0	3
11803	8	0
57217	0	1
6362	0	10
21749	0	2
35125	10004	0
4029	4	0
70	0	12
12213	6	0
2309	3	0
5859	0	4
114	2	0
27	3	0
28	3	0
27	7	0
7	0	29
21	0	5
82	5	0
23	0	5
147	0	29
3020	31	0
1723	1	0
9040	1	0
2128	1	0
5950	0	4
5719	0	8
10468	4	0
8537	1	0
616	1	0
2755	0	2
1755	1	0
3315	0	28
72	0	2
43	2	0
26	8	6
172	0	8
176	1	0
364	1	0
423	1	0
1272	1	0
1004	2	0
687	0	4
1019	13	0
310	0	1
1673	2	0
2334	1	0
1398	6	0
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320	1	0
375	0	2
2711	0	20323
1592	9	0
3861	0	1
2562	1	0
285	0	20
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10110	0	4
48964	2	0
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3263	0	12
4421	0	1
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39330	1	0
22474	1	0
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11944	1	0
23354	0	2
2082	0	6
7179	0	4
30235	0	344
12293	323362	311619
28743	5	0
1696	0	10
297	10	0
2206	5	0
927	0	10
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932	0	5
844	0	5
191	15	0
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474	0	5
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110	0	30
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69	0	10
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3390	0	5
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5439	0	5
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777	10	0
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8	5	0
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409	0	5
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1725	5	0
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380	0	5
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6727	5	0
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22	0	2
1181	1	0
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5938	1	0
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6	0	7
19016	1	0
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12538	0	2
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158	1	0
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572	5	0
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1111	898	23336
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25	10	0
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572	0	5575
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1754	0	11080
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635	0	5
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906	0	1378
10	0	1842
3	0	5
8	7359	0
121	24617	12166
995	0	5
1769	5	0
6873	0	15
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2842	205639	185079
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557	0	30
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486	5	0
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33	5531	0
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18	0	5576
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3668	0	5
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512	3038	0
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9	0	5
202	0	25
574	0	1
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4	0	5
1912	0	40
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1473	11026	0
693	25523	8892
1869	0	5
76	0	5
1304	0	3
289	10	0
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206	5565	0
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193	5	0
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6736	5	0
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339	0	20
29	19085	0
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69	0	15
1615	0	3811
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5564	5	0
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2377	5	0
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88	0	6
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645	0	20
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3934	34330	25802
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2725	0	5
19	1	0
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118	0	1
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253	2	0
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161	1542	0
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5	0	5
27080	6	0
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916	3	0
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1382	8	0
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11530	3411	3411
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5130	4	0
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32	0	2
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1742	12	0
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907	1	0
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47	0	8
1952	4	0
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5630	4	0
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7862	1	0
13767	1	0
73	0	1
10647	1	0
1366	0	1
1509	2	0
347	0	4
254	2	0
11013	1	0
951	1	0
16952	2	0
5226	2	0
1381	0	7
12918	6	0
7	0	1
108	7	0
1	0	1
75	1	0
30	1	0
22	8	26
30	0	1
10	0	1
15	2	0
3	0	1
10	4	0
20	8	0
30	0	1
4	0	1
1	2	0
65	0	1
5	0	1
13	5	0
15	1	0
14	5	0
13	97	13
18	27	7
12	64	11
27	7	0
7	17	0
35	21	3
16	5	0
1	10	0
18	8	0
1	3	0
9	1	0
1	5	0
7	23	0
5	1	0
36	6	0
12	8	0
18	1	0
13	4	0
7	23	29
31	8	0
9	145	8
22	52	12
18	5	0
33	1	0
8	6	0
14	0	4
18	5	0
47	20	0
15	3	0
1	0	4
17	0	1
36	14	5
27	3	0
21	1	0
14	4	0
22	3	0
21	3	0
52	0	1
6	64	23
27	0	3
61	3	0
15	9	0
15	0	4
3	0	1
24	1	0
31	5	0
67	0	5
23	0	1
50	101	15
11	0	2
17	3	0
26	0	1
35	2	0
29	4	0
36	0	6
32	4	0
37	1	0
29	4	0
70	4	0
60	0	1
6	1634	1
56	0	5
53

chain 11118576 HG01505_chrY 52372443 + 24039387 24178540 HG002_chrY 62432599 - 38399346 38539790 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
715	0	4757
650	20341	6035
7	1	0
2251	0	1
3446	1	0
864	1	0
1457	0	11
1558	1	0
3724	1	0
3316	5	0
3200	1	0
1163	0	2
860	0	1
9915	1	0
195	0	8
4130	12	0
1653	4	0
2516	0	1
1668	1	0
2015	0	1
3438	12	0
33123	0	7
223	1	0
95

chain 3058316 HG01505_chrY 52372443 + 21821766 21854059 HG002_chrY 62432599 - 40507615 40539913 3
6287	0	1
5505	0	4
20501

chain 427764 HG01505_chrY 52372443 + 23154947 23159458 HG002_chrY 62432599 - 39338719 39343231 4
2490	0	1
2021

chain 322611 HG01505_chrY 52372443 + 14712457 14715865 HG002_chrY 62432599 - 47507067 47510475 5
3408

chain 6804 HG01505_chrY 52372443 + 24186679 24186839 HG002_chrY 62432599 - 38539790 38542814 6
2	0	2864
158

chain 2683 HG01505_chrY 52372443 + 12326094 12326122 HG002_chrY 62432599 + 12511308 12511336 7
28

chain 1042 HG01505_chrY 52372443 + 1043699 1043711 HG002_chrY 62432599 + 1023969 1023981 8
12