##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
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17	3	0
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1665	14	0
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485	0	32
23	0	2
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483	4	0
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78	4	0
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33	0	8
39	4	0
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149	1	0
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14	0	45
1915	3	0
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5	0	1
285	58	0
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7	0	4
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274	12	0
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852	3	0
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55	1	0
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20	0	8
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8	0	85
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6	24	0
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18	111052	8558
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19	6	0
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1113	1	0
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3744	0	1
51	0	18
19	4	0
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4	0	20
866	1	0
1505	0	3
794	2	34
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356	1	0
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22	0	4
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786	0	28
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715	3	0
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21	0	5
82	5	0
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147	0	29
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72	0	2
43	2	0
26	8	6
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3397	5	0
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12293	329271	326879
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8	7359	0
121	41202	12166
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21	29589	47635
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102	9616	0
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2166	42099	8892
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76	0	5
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9485	2	0
15950	6	0
43488	1	0
8759	0	2
16387	0	1
1207	0	1
5959	0	1
16267	2	0
29	0	4
41	10	0
13239	0	1
1380	1	0
3659	1	0
48672	1	0
20685	0	6
26	0	22
6479	2	0
9440	0	6
10358	2	0
4386	0	1
23796	1	0
2361	0	1
5866	0	8
7	2	0
11389	1	0
2999	0	2
37612	4	0
521	1	0
19797	0	2
2	0	2
7	0	6
10795	0	2
12621	0	1
562	4	0
4351	0	2
18623	0	1
13659	0	1
1042	0	1
16444	0	1
26381	14175	2803
20102	0	10
19581	0	55
495	0	2894
1798	10	0
3926	0	15
1625	20	0
324	5	0
58	0	1
866	15	0
1609	0	20
1243	5	0
2863	15	0
558	0	10
54	0	1
1760	5	0
505	0	5
2863	0	15
1023	0	1
601	20	0
332	5	0
1924	0	1
618	0	2878
741	0	5
495	5	0
1023	0	1
601	20	0
1264	0	5
596	1	0
1002	20	0
1249	5	0
539	5	0
16	5	0
61	1	0
1002	0	20
167	0	10
1061	0	10
1023	0	1
601	20	0
738	0	5
1122	1	0
1002	0	20
1248	10	0
547	0	10
2306	20	0
548	0	10
465	1	0
601	0	20
738	5	0
507	15	0
538	0	10
468	1	0
601	0	20
2883	20	0
167	10	0
1061	10	0
540	0	10
473	1	0
1364	5	0
507	5	0
1021	1	0
601	0	20
1248	5	0
558	10	0
54	1	0
1002	20	0
1243	0	15
547	10	0
65	0	1
1002	20	0
1800	10	0
2311	0	15
552	10	0
60	0	1
1002	20	0
1253	0	5
547	10	0
2316	0	10
2367	0	5
496	10	0
622	1	0
2252	0	5
1632	20	0
446	0	2873
1032	0	1
6055	0	10
1128	24142	14188
7	432	0
2521	0	10
815	10	0
6910	0	6262
695	0	5
6247	0	5
7176	0	5
40	0	5
17696	0	5
15558	0	5
19593	0	15
182	15	0
227	1	0
2534	5	0
137	10	0
2	10	0
15	5	0
791	0	5
5	0	5
1378	0	5
404	3151	0
383	5	0
134	10	0
820	5	0
2300	0	5
9341	5	0
22	5	0
18655	0	10
3081	5	0
4608	3107	0
4786	0	3107
36	1	0
709	5	0
4660	1	0
12506	0	10
3221	5	0
16952	5	0
4358	0	5
9086	8287	0
659	10	0
1990	5222	0
312	20	0
590	0	5
131	0	20
2044	10	0
569	0	5
131	0	30
2054	10	0
732	1	0
1627	0	15
314	0	20
8	8797	581
436	0	5
1774	5	0
561	0	1
158	10	0
2044	15	0
564	5	0
131	30	0
2019	0	15
47	0	1
118	2	0
36	0	1
495	30	0
1684	0	15
329	15	0
706	30	0
249	0	5
1749	5	0
36	0	10
720	10	0
2019	0	15
47	0	1
156	0	1
495	30	0
1684	0	15
335	15	0
211	1	0
488	30	0
254	0	5
1770	20	0
715	10	0
1668	15	0
351	0	10
47	0	1
2345	0	15
351	0	10
2727	0	5
235	1	0
2179	15	0
355	0	20
5	0	5
47	0	1
940	5	0
4150	0	15
5846	5	0
2758	0	15
77	0	1
3681	5	0
1745	0	5
85	0	1
2263	19379	0
916	2758	0
13297	5	0
2070	15	0
1443	10	0
954	0	15
708	0	15
371	5	0
244	0	5
314	0	5
389	10	0
2324	24844	0
1142	0	15
2215	0	1
6557	15	0
641	10822	145
2515	5	0
14182	0	45
13	45	7148
1363	15	0
7879	4	0
1408	0	5
6030	1285882	1140961
40	3554	0
1932	0	1
113	0	20
1966	0	15
1525	29630	33286
10	15	0
69	1	0
1132	1	0
300	0	5
7	0	10
13	0	5
505	0	14
2753	15	0
10772	0	5
9576	3505	5330
3	0	1710
379	15	0
457	0	15
219	15	0
494	14	0
754	0	20
13	10	0
5	0	15
10	0	10581
1129	15	0
818	0	15
7030	0	15
15854	49465	5937
6973	0	1
334	1567	0
1	60810	9199
9481	1	0
8430	9163	3533
5	0	2096
17456	0	10
37	0	10
954	15	0
798	15	0
1733	10	0
1804	5	0
1732	0	5
445	0	5
2324	0	5
452	15	0
3898	7108	0
1821	10	0
1728	5	0
415	10	0
1361	15	0
939	5	0
1272	15	0
1318	10	0
952	5	0
1183	1	0
44	10	0
36	0	15
759	21233	0
543	15	0
4412	15	0
75	5	0
818	0	5
1789	0	15
927	0	5
818	5	0
5343	0	3544
2290	1034	4588
1146	0	5
6349	2411	2411
174	1190	8387
3101	9675	2412
6220	0	2416
2574	4979	0
37653	2422	0
11	411	0
14	0	5
55	0	13
9	5	0
28	48	0
2	12	0
53	20	0
16	10	0
14	5	0
28	15	0
25	5	0
13	5	0
4	0	5
30	6	0
9	608	0
682	12686729	31968478
823	0	5
119	15	0
833	5	0
3	25	0
326	15	0
6037	25	0
13729	10173	2913
5552	4825	7243
5780	2	0
79	2	0
1111	0	2
174	0	4835
10750	2	0
994	0	2
1	2	0
5	0	2
600	1	0
690	2419	0
3861	4836	4836
4277	28831	42950
2711	5	0
229	0	15
111	1	0
156	0	15
499	5	0
333	10	0
87	1	0
706	15	0
1716	1	0
640	0	15
349	0	20
919	0	5
1340	53055	172223
5845	1	0
1041	10	0
2952	0	26846
6409	2	3521
154	0	15
1282	0	10603
18633	1	0
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3355	5	0
2414	0	1
167	3504	0
12	0	5
954	0	10
81	0	15
416	10	0
152	0	45
125	20	0
92	0	1
1459	1	0
656	0	1
6412	1	0
1254	25	0
4986	0	14139
2092	25	0
3557	15	0
2235	1	0
1194	0	1
5874	1	0
179	5	0
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414	0	5
156	45	0
122	0	20
583	0	5
150	1	0
432	0	15
566	5	0
940	10	0
101	15	0
8	25	0
381	0	10
168	45	0
122	0	20
103	1	0
2723	25	0
3356	0	15
7086	0	15
3693	25	0
1881	1	0
1480	0	15
3520	0	15
174	0	25
4078	0	7080
21651	1	0
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74	0	25
14	5079	1599
1328	1	0
494	0	20
66	0	40
6429	0	1
494	20	0
66	40	0
13419	0	1
513	20	0
61	40	0
51377	0	5
14	0	5
387	1	0
334	0	15
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24	15	0
777	1	0
334	0	15
134	5	0
3513	0	3498
552	30	0
2419	1	0
341	0	15
129	5	0
8828	21497	10994
3805	5	0
7804	15	0
24905	5	0
37648	0	2
32577	8	0
3486	0	1
5649	2	0
26	1	0
5880	0	4
2763	0	21
8494	1	0
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16380	0	4
48301	0	10
2433	3	0
21	0	36
2862	4	0
2677	2	0
4328	12	0
55972	0	3
7339	0	1
10396	2	0
7219	1	0
4828	1	0
3145	12	0
35437	0	1
109679	2	0
378	2	0
82	0	2
6998	0	1
11598	58	0
745	6	0
45	0	12
294	0	10
1	0	2
43	0	1
10	0	1
15	2	0
14	4	0
20	8	0
28	0	54
3	1	0
6	0	5
6	0	1
5	0	1
7	0	1
4	73	51
6	0	1
17	75	5
13	83	17
44	0	1
18	1	0
2	5	0
18	12	0
15	14	4
9	1	0
1	5	0
12	1	0
79	4	0
7	0	2
6	23	9
52	156	8
22	57	9
21	5	0
33	1	0
8	6	0
36	5	0
46	1	0
1	20	0
15	3	0
64	3	0
27	3	0
57	3	0
21	3	0
59	17	0
2	0	2
9	3	0
9	25	1
27	0	3
61	3	0
15	9	0
78	5	0
95	0	1
50	101	15
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1668	1
56	0	5
53

chain 39536020 HG01243_chrY 43015197 + 23138172 25201887 HG002_chrY 62432599 - 38399346 43071658 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4938	0	1
13	0	1
6999	1	0
105	0	1
53	0	4
552	0	2381
638	1	0
67	4	0
123	1	0
13	4	0
207	6	0
429	1	0
145	1	0
20	1	0
8	15	0
46	0	1
62	0	1
60	0	4
498	0	2
210	1	0
435	29933	6092
7	1	0
2251	0	1
3446	1	0
864	1	0
1457	0	10
1559	1	0
3724	1	0
3316	5	0
3200	1	0
1163	0	2
860	0	1
9915	1	0
195	0	6
4132	12	0
740	0	1
912	2	0
2516	0	1
1668	1	0
2015	0	1
3438	12	0
8290	1	0
24833	0	7
223	1	0
95	8139	0
2	0	2864
158	1503097	4127644
9564	4	0
5630	2	0
2	8	0
47	0	2
3983	0	12
4234	2	0
8403	1	0
726	0	8
39	0	2
4386	0	8
9881	3	0
23661	0	1
19323	2	0
4754	9	0
6093	1	0
840	1	0
5681	0	1
25948	0	1
1695	1	0
86	0	1
1312	1	0
16236	1	0
3742	0	2
131	0	2
14740	2	0
902	1	0
7181	0	20
604	39673	39663
660	0	2
2	0	8
8037	4	0
14738	2	0
104	2	0
7000	1	0
14320	1	0
4588	1	0
25319	23	0
3480	1	0
6933	23	0
4754	2	0
57214	2	0
44	2	0
6396	0	5
49	0	5
11001	0	2
14226	0	1
1409	1	0
479	1	0
877

chain 36487443 HG01243_chrY_random0000188 386035 + 3 385989 HG002_chrY 62432599 - 43058722 43444709 3
1015	0	1
3489	0	4
25159	0	2
21311	6	0
7588	1	0
6406	1	0
10908	0	6
46662	2	0
21412	5	0
10639	1	0
3387	1	0
12072	0	12
4399	0	1
6711	1	0
11919	3	0
35955	2	0
13751	1	0
38393	0	4
17415	0	1
1045	0	1
1720	0	1
6102	0	1
3837	1	0
3280	1	0
32042	0	1
6718	6	0
3	1	0
5	1	0
21786	1	0
10598	0	1
224

chain 7477399 HG01243_chrY_random0000175 192253 + 86623 191923 HG002_chrY 62432599 - 38401468 38492479 4
99	0	1
20399	0	2
25530	0	4757
158	1	0
435	25145	6092
13410	0	4
2024	0	1
1196	2	0
3200	3	0
12136	0	6
1039	1	0
522

chain 6745970 HG01243_chrY_random0000175 192253 + 1 86623 HG002_chrY 62432599 + 23940529 24033253 5
1152	0	6
12136	3	0
3200	2	0
3214	0	8
19448	14350	57
435	1	0
158	0	4757
2804	0	4780
11996	0	10850
17723

chain 4950426 HG01243_chrY_random0000071 65416 + 12855 65416 HG002_chrY 62432599 - 43579047 43631561 6
17806	2	0
1	8	0
47	3	0
59	14	0
10120	4	0
6	25	0
1955	0	1
5094	0	2
2520	2	0
48	0	1
1467	0	8
13185	1	0
56	0	1
62	1	0
75

chain 3741873 HG01243_chrY 43015197 + 24980519 25020185 HG002_chrY 62432599 + 19542601 19582257 7
2666	2	0
10499	2	0
1508	1	0
5018	4	0
4450	1	0
15515

chain 3058316 HG01243_chrY 43015197 + 20897055 20929348 HG002_chrY 62432599 - 40507615 40539913 8
6287	0	1
5505	0	4
20501

chain 1216435 HG01243_chrY_random0000071 65416 + 5 12855 HG002_chrY 62432599 + 18844159 18857009 9
12850

chain 982810 HG01243_chrY_random0000072 16384 + 0 10436 HG002_chrY 62432599 + 18846571 18857009 10
61	0	1
256	0	1
173	1	0
164	1	0
296	1	0
28	0	2
153	1	0
26	1	0
34	2	0
139	0	1
15	0	1
146	0	1
117	0	1
6596	0	1
2225

chain 559437 HG01243_chrY_random0000072 16384 + 10436 16383 HG002_chrY 62432599 - 43579047 43584998 11
527	1	0
4719	0	1
252	0	1
113	0	1
32	0	1
198	0	1
105

chain 427764 HG01243_chrY 43015197 + 22253760 22258271 HG002_chrY 62432599 - 39338719 39343231 12
2490	0	1
2021

chain 372467 HG01243_chrY 43015197 + 26044035 26047980 HG002_chrY 62432599 - 36078953 36082898 13
3945

chain 322611 HG01243_chrY 43015197 + 14844425 14847833 HG002_chrY 62432599 - 47507067 47510475 14
3408