##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 2196970892 HG00621_chrY 50449105 + 4868 50445183 HG002_chrY 62432599 + 2 62432577 1
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7	40	0
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58	28	0
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1674	1	0
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14	162	357
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75	0	14
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27	3	9
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4	0	20265
4318	2	0
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836	1	0
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4030	0	20277
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6513	1	0
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6	2	0
846	1	0
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356	1	0
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489	6	0
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830	1	0
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26	4	0
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1	0	2
356	0	1
2000	0	5
1716	2	0
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5	0	8
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8460	1	0
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35	0	121774
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24	24	0
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968	0	15
923	12	0
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79018	1	0
5532	4	0
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122	4	0
84	4	0
28539	10	0
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8029	1	0
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6588	0	1
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6632	1	0
1995	0	2
6636	13	0
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26	4	0
1065	0	4
1355	0	4
92	4	0
49	0	4
83658	1	0
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11940	1	0
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422	0	1
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806	1	0
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2765	1	0
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109	1	0
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468	1	0
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47	1	0
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151	1	0
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5	1	0
118	0	1
50	0	3
253	2	0
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161	1542	0
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6667	1	0
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5	0	5
45	0	5
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8558	6	0
43	0	4
2932	0	2
916	0	6
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32193	1	0
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683	1	0
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3521	1	0
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9575	4	0
49	4	0
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42834	3	0
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59	0	12
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317	21	0
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79	4	0
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8339	1	0
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2	2	0
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351	2	0
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297	0	1
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677	0	3
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63	2	0
23	0	2
19905	4	0
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289	0	1
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2	19	0
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11584	1	0
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7040	2	0
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640	2	0
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15	1	0
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292	4	0
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161	1	0
66	0	2
3712	0	2
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6621	2	0
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3758	1	0
693	0	4
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48	0	4
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328	12	0
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3	0	8
23087	4	0
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4090	1	0
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1974	1	0
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32	4	0
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67	4	0
7	2	0
2287	0	1
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18	0	8
15876	0	3
7416	1	0
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859	0	2
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8435	2	0
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6	4	0
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17	0	4
5	0	4
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239	0	4
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74	4	0
4	0	1
42	0	1
21	0	8
1086	2	0
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60	0	1
6387	2	0
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13	0	5
10524	1	0
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378	0	6
6692	1	0
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7767	1	0
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30	2	0
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6578	0	4
4486	1	0
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25	0	2
3569	2	0
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8529	4	0
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7212	0	4
79	24	0
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3956	0	1
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24496	1	0
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41	2	0
34	0	2
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14	0	1
2033	1	0
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35	0	2
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6749	1	0
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6	4	0
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32	0	2
2	0	6
1734	0	8
116	4	0
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27354	1	0
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32	2	0
2858	0	6
4078	3373	3373
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48	2	0
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6	4	0
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39072	8	0
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6	25	0
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44	8	0
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3	7	0
6718	0	1
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666	1	0
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902	1	0
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660	39651	39663
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1592	3	0
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10	67292	0
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307	50600	29505
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6941	0	125
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8612	7905	4279
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332	0	7
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63	4769669	4794680
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3313	19793	16291
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603	2916	9978
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71	72492	53108
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947	5	0
1183	1	0
44	10	0
810	20427728	32045929
5521	5	0
39	0	290
308	0	3559
8089	7346	3779
1775	45	0
5	5	0
3	25	0
6363	25	0
13729	15010	2913
13737	0	2
79	0	2
937	9684	21766
5	0	2
600	1	0
690	2417	0
3861	4836	4836
5660	40517	38068
502	15	0
8794	0	1404
5178	5	0
542	10	0
51	1	0
1303	0	4494
11036	5	0
9584	7137	0
15	0	30
1103	0	10
17393	15	0
354	0	5
673	0	5
4280	5	0
134	0	15
752	10	0
1178	0	17147
90	0	15
1692	0	3547
1827	2918	0
40	0	5
2519	0	7
8	32923	8095
43	0	5
465	0	1
1284	0	7063
12427	0	5
173	0	7113
3396	0	10
530	3549	0
9038	0	3549
8084	25	0
14961	944	4478
22	0	10
9052	14382	10823
13911	18663	6604
16779	0	10603
11972	0	17673
3126	1	0
7069	1	0
6255	0	10604
33814	0	25
3519	25	0
5416	1	0
1645	25	0
3559	0	25
3450	0	1
60	0	25
835	185	3705
2515	0	25
3370	15	0
3685	0	25
3370	15	0
150	25	0
3356	15	0
1810	40	0
1849	25	0
1644	40	0
1875	25	0
1059	1	0
494	0	20
120	5112	1592
269	25	0
1059	1	0
494	0	20
1778	0	15
1808	40	0
1672	0	15
1808	40	0
1851	25	0
1658	40	0
1666	0	15
1814	40	0
1672	0	15
11718	0	1
494	20	0
66	40	0
24126	0	3514
45	0	155
114	0	3609
10103	3503	0
9731	5	0
3521	5	0
1438	30	0
5528	5	0
3475	5	0
32	0	3508
13988	5	0
32709	5	0
37648	0	2
32577	16	0
153	8	0
3333	0	1
11555	0	4
2763	0	7
10985	0	3
16383	8	0
37980	2	0
12789	0	36
1774	0	1
1087	2	0
2677	2	0
4328	12	0
928	1	0
6743	0	4
2550	1	0
6251	0	3
6451	0	1
5770	19	0
1776	0	3
2033	0	1
3697	2	0
866	1	0
6134	0	1
109	0	1
2373	1	0
1036	1	0
43	0	1
1026	2	0
1707	1	0
3695	0	1
2723	5	0
45	0	6
11	0	3
2374	1	0
4546	0	1
401	0	1
10396	2	0
7215	0	1
4831	1	0
15807	0	33
22742	0	1
28566	0	1
66871	1	0
2146	1	0
12391	0	4
68	0	4
6	2	0
37	0	4
134	4	0
716	3	0
4335	0	8
1373	5	0
475	0	1
12343	6	0
243	0	45
41	1	0
22	0	10
1	0	2
43	0	1
10	0	1
15	2	0
3	0	1
10	4	0
20	8	0
6	49	13
11	0	1
16	9	3
23	5	0
5	7	0
29	18	0
14	7	0
11	48	0
32	6	0
7	183	29
14	75	17
21	33	11
12	0	1
18	27	3
15	39	5
12	14	4
9	1	0
1	5	0
7	24	0
41	6	0
12	7	0
5	0	1
6	7	0
3	0	1
15	4	0
7	0	2
6	23	9
43	183	17
22	57	9
21	5	0
33	1	0
8	6	0
36	5	0
46	1	0
1	20	0
15	3	0
59	14	5
27	3	0
51	15	6
21	3	0
59	17	0
2	0	2
9	3	0
9	25	1
27	0	3
61	3	0
15	9	0
78	5	0
95	0	1
50	101	15
11	0	2
79	2	0
29	4	0
36	0	6
32	4	0
66	4	0
70	4	0
60	0	1
6	1668	1
56	0	5
53

chain 11098360 HG00621_chrY 50449105 + 23856499 24007552 HG002_chrY 62432599 - 38399346 38539790 2
17699	0	1
23	0	10850
4459	1	0
2454	1	0
4952	0	1
6999	1	0
715	0	4757
650	32265	6035
7	1	0
2251	0	1
4310	1	0
1457	0	10
1559	1	0
3724	1	0
3316	4	0
4363	2	0
862	0	1
9915	2	0
4333	12	0
740	0	1
912	4	0
2250	0	1
265	0	1
1668	1	0
2015	0	1
3434	0	4
754	0	1
7535	1	0
24833	0	25
205	1	0
95

chain 3740603 HG00621_chrY 50449105 + 19243455 19283099 HG002_chrY 62432599 - 42850342 42889998 3
19965	4	0
6510	0	16
10499	2	0
881	0	2
1783

chain 6804 HG00621_chrY 50449105 + 24015691 24015851 HG002_chrY 62432599 - 38539790 38542814 4
2	0	2864
158