##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=axtChain O=400 E=30
chain 4163862818 HG03688_chrY 59904468 + 12442 59898952 HG002_chrY 62432599 + 1 62432599 1
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642	1	0
590	30	0
1554	0	10
394	0	1
430	5	0
744	0	15
71	20	0
414	0	5
494	1	0
282	0	20
927	0	1
181	0	15
785	0	5
1300	0	25
618	110	0
233	1	0
2225	0	20
414	15	0
489	0	1
1415	10	0
785	0	5
785	1	0
515	0	5
5436	0	10
275	20	0
494	0	10
785	0	1
513	10	0
22	0	5
3510	0	10
1906	0	784
775	1	0
3530	0	5
520	20	0
1881	0	5
2097	5	0
3532	20	0
1881	5	0
789	10	0
780	0	1
508	15	0
2268	0	5
744	0	5
520	20	0
1890	0	5
271	0	20
494	20	0
2722	0	10
2099	30	0
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785	10	0
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483	0	15
57	0	5
297	369	0
1580	5	0
739	5	0
520	0	10
2695	5	0
785	0	1
3530	5	0
520	20	0
1881	0	5
789	5	0
1656	3589	3785
339	20	0
416	15	0
686	10	0
461	15	0
234	15	0
61	20	0
1640	3584	3785
339	20	0
416	15	0
1147	15	0
234	15	0
60	20	0
1306	0	10
334	3615	0
319	20	0
416	15	0
682	15	0
455	15	0
234	15	0
61	25	0
1300	0	15
340	3579	3790
339	20	0
416	15	0
682	5	0
470	15	0
234	15	0
61	15	0
3046	5	0
2008	0	5
1808	0	10
665	0	15
1328	10	0
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579	5	0
1414	15	0
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1998	10	0
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1993	15	0
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699	0	15
61	0	15
3091	0	2403
638	15	0
26	0	15
61	0	25
5074	0	5
1808	0	5
2038	5	0
9384	0	5
2007	0	5
6368	5	0
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1873	10	0
775	0	3826
1273	0	10
6309	0	5
3931	5	0
514	0	5
3337	4	0
3552	0	15
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1280	0	15
10928	0	5
4911	0	5
3674	0	5
2466	8553	0
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6429	5	0
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2238	0	5
1032	0	5
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1749	0	10
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847	5	0
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814	0	5
195	0	5
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392	5	0
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324	5	0
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240	75	0
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703	0	5
2691	5	0
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667	10	0
8767	1	0
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2223	1	0
6017	5	0
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28	0	6
10152	1	0
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696	10	0
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386	1	0
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613	0	2
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173	0	4
8466	1	0
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299	2	0
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3723	1	0
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5530	0	1
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3916	8	0
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3443	0	15
360	1	0
558	8	0
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121	8	0
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79322	0	5
6594	0	1
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7264	1	0
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3038	2	0
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100	4	0
116	4	0
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7741	0	1
2878	0	6
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6533	1	0
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3944	0	4
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182	0	1
2498	1	0
7968	2	0
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109	1	0
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684	0	2
468	1	0
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234	1	0
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47	1	0
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151	1	0
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5	1	0
118	0	1
50	0	3
253	2	0
342	0	1
155	1542	0
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4911	1	0
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50	0	5
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915	5	0
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15357	1	0
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58447	1	0
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35610	1	0
5695	0	1
15128	0	4
35114	1	0
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235	2	0
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54975	0	13
320	20	0
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33389	10	0
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7066	2	0
6839	0	44
15	0	2
13197	0	1
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2056	0	2
18514	2	0
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1512	0	6
2903	1	0
6706	0	5
5570	0	2
2117	0	1
1580	1	0
325	1	0
290	0	3
1391	12	0
10446	1	0
1133	3414	3414
1118	0	1
10409	12	0
1409	0	4
297	1	0
345	1	0
1565	1	0
1775	2	0
5863	0	5
9625	0	2
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9324	1	0
1818	8	0
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3287	0	1
8588	0	1
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22556	0	3
126	6	0
677	15	0
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12449	1	0
7538	6	0
1608	4	0
288	0	1
17014	21	0
367	42	0
1465	1	0
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3388	0	1
15392	1	0
17331	0	2
633	2	0
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4896	0	7
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15	1	0
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5801	0	4
384	0	4
3605	4	0
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15773	22	0
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153	2	0
65	0	2
3720	0	2
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7477	1	0
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41	0	6
4455	1	0
881	0	2
8311	0	1
8914	7	0
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4411	0	2
2903	4	0
73	12	0
1692	10	0
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6239	0	1
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787	5	0
1723	0	4
790	4	0
3656	0	8
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4767	0	4
230	0	4
6013	1	0
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4878	1	0
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572	0	4
30	8	0
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5450	0	1
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17604	2	0
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8933	1	0
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18	2	0
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17	1	0
3759	0	1
33	0	1
573	12639	12641
4318	2	0
59	5	0
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4	0	2
59	0	1
11268	0	4
3091	2	0
12608	18705	21173
38	1	0
409	1	0
199	27069	24590
2422	1	0
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78	0	5
46	0	6
10	0	2
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1618	1	0
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370	8	0
871	0	4
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8557	20	0
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553	0	8
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3490	0	1
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1172	1	0
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3071	0	1
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26	4	0
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8798	0	12
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319	0	2
961	1	0
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435	0	8
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181	0	4
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31467	0	7
11	0	1
30845	1	0
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1981	4	0
2252	1	0
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2857	0	24
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1524	0	5
2526	0	2
7039	29	0
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57	19	0
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17810	3457	3457
17809	16	0
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44	0	1
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60	0	2
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2003	0	20
69	1	0
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649	0	1
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6841	2	0
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131	0	2
3742	1	0
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84	1	0
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758	1	0
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2744	3	0
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6916	1	0
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689	1	0
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30	0	77
53	0	7
15	0	7
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90	0	3
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386	156631	165295
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8	0	2
42	0	2
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102	2138	2138
91	1	0
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386	3945	3945
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66	2138	2138
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385	3945	3945
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843	15	0
1818	5	0
883	5	0
1770	20	0
1122	0	1
643	20	0
1830	10	0
1782	17	0
2	3	0
1713	20	0
1122	0	1
1629	5	0
2606	5	0
1353	0	15
417	10	0
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502	10	0
245	0	15
1093	0	15
1708	0	1
502	15	0
245	0	15
1093	0	15
1790	0	1
415	0	5
912	3595	3570
260	0	1
189	0	15
1347	15	0
864	35	0
1318	0	15
1790	0	1
395	5	0
46	10	0
204	15	0
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641	1	0
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864	30	0
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903	0	1
189	0	15
413	0	5
228	1	0
705	15	0
864	5	0
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1552	0	20
101	0	1
344	903	0
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1353	0	15
2306	0	1
1779	0	2076
1678	20	0
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417	5	0
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1093	0	15
2232	20	0
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2191	20	0
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417	0	5
1779	0	5
230	15	0
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417	5	0
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402	5	0
48	0	1
1782	0	10
1307	0	15
426	0	2646
948	1	0
821	15	0
1368	0	15
426	0	2641
948	1	0
805	23	0
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253	15	0
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1789	0	15
1775	0	5
1789	10	0
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464	0	10
26	2	0
376	15	0
817	15	0
486	0	15
1338	0	15
910	903	0
388	0	10
1353	0	15
396	25	0
863	1989	0
85	1	0
2189	0	15
421	0	2641
948	1	0
322	625	2150
253	0	1
306	15	0
193	0	15
609	15	0
486	0	5
953	1	0
736	0	1
126	10	0
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527	0	10
648	0	10
649	0	15
464	10	0
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836	5	0
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347	5	0
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375	5	0
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396	30	0
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16	1	0
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1283	15	0
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953	1	0
2099	15	0
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910	903	0
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396	30	0
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1469	0	10
46	0	5
52	0	74
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77	0	340
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2	0	4
75	0	90
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44	0	367
14	1	0
47	0	10
456	0	10
1307	0	15
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561	1	0
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1316	0	15
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1648	15	0
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83	1	0
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873	0	15
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345	15	0
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1343	0	15
2070	15	0
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953	1	0
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47	10	0
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37	10	0
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3569	5	0
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817	0	15
486	5	0
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3554	0	5
1789	5	0
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344	10	0
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2533	0	20
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543	3548	0
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36	0	5
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1755	0	5
1769	0	20
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1338	0	15
434	0	5
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1363	0	15
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481	1	0
861	2216	2194
387	5	0
1363	0	15
396	30	0
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1834	0	15
72	0	5
118	0	15
207	5	0
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637	10	0
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1093	0	15
72	0	5
387	10	0
446	903	0
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1343	0	15
396	30	0
38	0	10
900	1	0
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396	30	0
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943	1	0
412	0	15
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1643	15	0
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1238	0	1
831	15	0
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953	1	0
818	0	5
45	10	0
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1775	20	0
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354	35	0
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2705	15	0
864	5	0
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930	15	0
864	10	0
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70	0	1
1230	0	30
158	0	1
1615	20	0
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1510	0	5
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1840	10	0
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486	55	0
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816	10	0
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2804	1	0
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1820	5	0
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42	0	10
1737	15	0
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816	0	5
1900	0	1544
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286	35	0
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609	15	0
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945	1988	0
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1690	0	1
126	10	0
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3973	0	15
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898	0	5
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1398	20	0
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1551	1	0
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436	35	0
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1763	0	15
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593	0	780
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938	1	0
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45	10	0
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1764	10	0
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1825	0	10
393	1	0
70	0	1
1260	0	5
1213	4424	103961
644	5	0
342	27898	97637
427	0	1
2419	0	1
4839	1	0
3071	2419	0
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886	2	0
109	2420	0
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1982	7	0
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2703	1	0
130	3	0
1462	1	0
95	0	7
4833	0	7
1953	1	0
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28	7	0
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2413	0	7
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287	7	0
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1709	7	0
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2413	7	0
3117	8852	8840
121	7	0
386	0	3
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2418	0	2
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428	0	1
1889	0	2
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98	0	2
428	0	1
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428	0	1
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165	0	2
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165	0	2
2683	0	1
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1409	0	3
4469	2420	0
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56	0	2
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317	7	0
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391	1	0
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16	2	0
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21	2	0
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732	1	0
1889	2	0
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126	2418	0
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427	0	1
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1479	1	0
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1410	7	0
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963	2	0
317	0	7
706	0	2413
4	0	1
2410	2	0
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317	1	0
1137	0	4836
2965	3	0
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130	12084	9661
1746	0	1
554	2	0
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29	0	7
835	2419	0
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566	0	1
1938	1	0
3793	12433	19685
738	0	7
3445	0	2
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6829	2	0
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318	0	2
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329	0	1
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889	4838	0
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54	0	1
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177	0	2
1258	1	0
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35	0	1
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1267	2419	0
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79	0	2
2338	0	1
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643	1	0
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1596	0	7
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2866	2	0
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1545	7	0
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1105	1	0
439	7	0
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2420	2	0
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655	2	0
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2268	1	0
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99	2	0
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261	1	0
1990	2	0
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2299	2	0
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166	2	0
261	1	0
2011	0	1
2397	2	0
165	4	0
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263	1	0
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1409	3	0
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5561	1	0
925	1	0
723	0	3
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723	0	3
627	0	1
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1545	7	0
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318	0	2
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96	0	1
2320	2415	0
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74	0	7261
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255	2	0
164	4	0
1519	0	3
1349	9059	11479
158	2	0
134	1	0
1386	0	2920826
2397	0	1
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1163	2	0
1256	0	1
750	0	2
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3827	1	0
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1711	7	0
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2138	2	0
145	815	0
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2528	15	339527
6093	20	0
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6713	0	2
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1284	25554	27272
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72	1	0
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29	1	0
189	3	0
2526	0	4842
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1600	0	2
536	2	0
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21

chain 241610673 HG03688_chrY 59904468 + 37969218 58051941 HG002_chrY 62432599 + 39281727 46790635 2
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298

chain 162932386 HG03688_chrY 59904468 + 37154084 39230478 HG002_chrY 62432599 + 35172762 38038373 3
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228

chain 128612915 HG03688_chrY 59904468 + 41757216 43955153 HG002_chrY 62432599 + 50894770 52643357 4
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535

chain 93942265 HG03688_chrY 59904468 + 18921671 19916008 HG002_chrY 62432599 - 43080153 44074496 5
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8254

chain 86831156 HG03688_chrY 59904468 + 36588229 37644983 HG002_chrY 62432599 + 42666390 44172335 6
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1846

chain 85527362 HG03688_chrY 59904468 + 33914097 34963788 HG002_chrY 62432599 + 41450544 47953618 7
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2611

chain 69603105 HG03688_chrY 59904468 + 23467987 24204706 HG002_chrY 62432599 - 38939683 39676480 8
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444

chain 66055836 HG03688_chrY 59904468 + 55550134 56322130 HG002_chrY 62432599 + 58697731 59451945 9
247	0	1
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1903

chain 63528455 HG03688_chrY 59904468 + 47177553 47962327 HG002_chrY 62432599 + 49616046 50426803 10
273	2	0
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7425

chain 61059063 HG03688_chrY 59904468 + 34053848 34757394 HG002_chrY 62432599 + 41619810 42292036 11
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227

chain 59758576 HG03688_chrY 59904468 + 48923081 49733986 HG002_chrY 62432599 + 51566270 52228621 12
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247

chain 48345409 HG03688_chrY 59904468 + 35614190 36162241 HG002_chrY 62432599 + 48554587 49219202 13
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228

chain 44810093 HG03688_chrY 59904468 + 34584764 35200891 HG002_chrY 62432599 + 37883420 38394917 14
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89

chain 41714373 HG03688_chrY 59904468 + 57543187 58005924 HG002_chrY 62432599 + 60214286 60674512 15
5739	0	3
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4754

chain 30621090 HG03688_chrY 59904468 + 41757229 42101318 HG002_chrY 62432599 + 57535290 57872668 16
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352

chain 29384948 HG03688_chrY 59904468 + 36204076 36573348 HG002_chrY 62432599 + 42285010 42649088 17
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228	3627	2503
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527	13171	13181
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1330

chain 28003096 HG03688_chrY 59904468 + 42142422 42456452 HG002_chrY 62432599 + 57901682 58215929 18
1065	0	2
1111	0	2
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518	2420	0
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4838	2	0
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2362	1	0
632	0	1
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101	0	1
598	2	0
166	2	0
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994	2	0
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544	0	4
49

chain 25110902 HG03688_chrY 59904468 + 17625497 17891643 HG002_chrY 62432599 - 45104458 45370607 19
19387	0	3
6690	0	6
372	0	1
8015	2	0
28744	1	0
11314	8	0
530	2	0
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1102	0	2
4	0	2
56	3	0
31	0	8
7139	1	0
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6389	2	0
2590	1	0
5842	0	1
3075	0	1
28191	12	0
867	0	4
5832	4	0
19306

chain 24206464 HG03688_chrY 59904468 + 56339818 56607840 HG002_chrY 62432599 + 59466062 59745528 20
1723	10	0
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405

chain 21386880 HG03688_chrY 59904468 + 42204675 42454694 HG002_chrY 62432599 + 52828364 53095755 21
572	0	287
104	1	0
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392	0	21748
8770

chain 14413840 HG03688_chrY 59904468 + 37246113 37418761 HG002_chrY 62432599 + 43824960 43992206 22
13179	0	4840
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1761	0	1
652	2	0
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78	815	0
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3907	5	0
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1784

chain 11141217 HG03688_chrY 59904468 + 37700145 37827669 HG002_chrY 62432599 + 44200608 44356016 23
2453	1	0
1000	1	0
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29	1	0
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4127	2420	0
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7602

chain 10197591 HG03688_chrY 59904468 + 37482978 37599821 HG002_chrY 62432599 + 44010415 44130759 24
22462	0	5
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3568	3559	0
7108

chain 8785670 HG03688_chrY 59904468 + 37995760 38098942 HG002_chrY 62432599 + 44464070 44564312 25
10827	5	0
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2311

chain 8140950 HG03688_chrY 59904468 + 34869364 34960277 HG002_chrY 62432599 + 41381039 41472027 26
716	0	1
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4648

chain 6204389 HG03688_chrY 59904468 + 33957487 34027518 HG002_chrY 62432599 + 46754949 46821960 27
923	2869	0
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999	0	1
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1103	15	0
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336	0	20
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1093

chain 6109177 HG03688_chrY 59904468 + 37486002 37552984 HG002_chrY 62432599 + 38838502 38905557 28
1781	0	10
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177	30	0
1260

chain 5698465 HG03688_chrY 59904468 + 37831010 37907612 HG002_chrY 62432599 + 43933396 44422000 29
1070	0	10
10584	3514	0
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1532	0	1
6863	0	153
14770	0	5
7544	1	422436
1375	7083	0
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1758	15	0
266

chain 5562227 HG03688_chrY 59904468 + 37294808 37364399 HG002_chrY 62432599 + 38693282 38762666 30
14098	0	2419
7914	9680	0
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3181	0	1
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6517

chain 5498540 HG03688_chrY 59904468 + 33361325 33421630 HG002_chrY 62432599 + 31380031 31440163 31
47	10	0
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116	0	10
968	1	0
863	10	0
1722	10	0
1817	10	0
1065	0	1
651	0	20
3589	10	0
1765	20	0
47	10	0
344	2	0
719	0	1
656	10	0
444	1	0
513	5	0
812	20	0
1122	0	1
661	5	0
385	0	1
568	0	5
822	20	0
47	10	0
344	2	0
719	0	1
656	10	0
444	1	0
513	5	0
1268	0	20
1330	0	30
3527	10	0
1375

chain 5369843 HG03688_chrY 59904468 + 37718532 37777182 HG002_chrY 62432599 + 43839036 43897649 32
9919	0	2
957	0	2
1455	2	0
4828	2	0
3377	0	1
1450	2	0
2931	2	0
279	2	0
2137	2	0
278	2	0
1621	2	0
515	2	0
278	2	0
170	1	0
1967	2	0
278	2	0
1962	7	0
229	2	0
102	3	0
2068	0	1
1832	3	0
10849	1	0
4839	1	0
2419	1	0
1867

chain 5239353 HG03688_chrY 59904468 + 57553580 57611248 HG002_chrY 62432599 + 46281126 46338815 33
473	0	2
1944	3	0
473	0	2
3211	1	0
3024	0	5
851	2	0
6233	0	2
3444	2	0
2124	1	0
2419	1	0
2419	1	0
724	1	0
1694	1	0
4188	0	2
4701	2	0
135	0	2
1111	0	2
3633	2	0
757	0	2
446	0	2
1791	0	5
1931	0	2
3003	0	2
2418	0	2
2317	0	5
343	1	0
29	2	0
249	0	2
1307	0	2
256

chain 4664330 HG03688_chrY 59904468 + 37228856 37279756 HG002_chrY 62432599 + 38632963 38686296 34
3358	2	0
2294	3	0
72	0	1
1471	0	2
29	0	1
7868	0	2420
2160	0	2
14325	0	2
515	0	2
278	0	2
2138	0	2
278	0	2
1621	2	0
4177	0	1
3555	0	3
6754

chain 4141297 HG03688_chrY 59904468 + 37827684 37871992 HG002_chrY 62432599 + 44356016 44404054 35
4396	0	10
2398	0	1
2495	0	3544
475	1	0
568	1	0
2113	0	15
329	0	5
50	0	5
7119	1	0
20152	0	153
4210

chain 4098285 HG03688_chrY 59904468 + 33289474 33334215 HG002_chrY 62432599 + 31308191 31352929 36
2211	0	5
3559	15	0
828	15	0
1442	2	0
1298	20	0
812	15	0
1442	2	0
1303	0	20
802	15	0
276	5	0
683	0	10
473	2	0
1262	15	0
968	5	0
2611	15	0
1338	0	15
3574	0	15
407	10	0
1122	0	1
661	0	10
958	5	0
400	0	15
2201	5	0
1363	0	15
412	10	0
1122	0	1
2029	0	15
2206	0	5
1363	0	15
412	10	0
1122	0	1
661	0	10
1363	0	15
412	5	0
1474

chain 3914685 HG03688_chrY 59904468 + 49931421 49975614 HG002_chrY 62432599 + 46372246 46416499 37
9	0	3
732	0	2
2028	1	0
390	0	22
3229	0	16
3565	7	0
2413	7	0
1252	0	16
1145	7	0
2413	7	0
2413	7	0
2413	7	0
2413	7	0
2413	7	0
2220	0	1
192	7	0
2220	0	1
192	7	0
239	0	5
566	0	1
320	1	0
996	0	1
285	7	0
517	0	2
1732	0	2
962	2	0
285	0	32
2118	1	0
751	1	0
426	0	1
138	0	1
140	0	7
137	2	0
382	0	2
33	0	22
82	5	0
203	0	3
95	1	0
50	0	1
140	0	1
3	0	1
870	0	1
167	2	0
29	0	1
78	0	3
108	0	7
137	2	0
202	0	2
6	2	0
247

chain 3384930 HG03688_chrY 59904468 + 38116333 38152798 HG002_chrY 62432599 + 44142768 44179178 38
9951	0	5
8847	5	0
1288	0	15
486	10	0
2082	0	1
1466	10	0
1755	5	0
1761	25	0
3081	15	0
502	0	25
1009	1	0
724	5	0
1761	25	0
1651

chain 3367941 HG03688_chrY 59904468 + 33421630 33457602 HG002_chrY 62432599 + 31454339 31490538 39
7463	1	0
1892	0	5
3552	0	235
6861	0	5
1743	15	0
1122	0	1
651	15	0
2907	0	1
646	0	5
238	0	1
26	15	0
3304	0	15
3559	0	5
1962

chain 3290141 HG03688_chrY 59904468 + 37782022 37827441 HG002_chrY 62432599 + 43897649 43933396 40
9296	9676	0
15675	20	0
353	0	15
1589	0	5
620	0	5
1335	0	15
1852	0	15
329	40	0
472	1	0
330	15	0
136	0	25
3680

chain 2831167 HG03688_chrY 59904468 + 17340678 17370762 HG002_chrY 62432599 - 45625399 45655477 41
1905	0	3
2434	4	0
48	2	0
5705	0	3
6468	1	0
5367	0	1
16	0	1
3774	7	0
4353

chain 2830026 HG03688_chrY 59904468 + 37615414 37674591 HG002_chrY 62432599 + 38599927 38630737 42
1431	0	1
510	0	5
888	0	15
720	15	0
2865	0	15
2133	21290	0
15625	7093	0
5318	5	0
1284

chain 2720708 HG03688_chrY 59904468 + 48890164 48919192 HG002_chrY 62432599 + 51537302 51566270 43
9719	15	0
292	20	0
16471	5	0
555	15	0
1205	5	0
726

chain 2334517 HG03688_chrY 59904468 + 37220282 37246113 HG002_chrY 62432599 + 43789452 43824958 44
6813	0	2
278	2	0
2293	3	0
4914	0	1
192	0	2420
1497	3	0
7676	0	7260
2160

chain 2040894 HG03688_chrY 59904468 + 32089289 32111550 HG002_chrY 62432599 + 31495057 31517367 45
656	0	10
390	1	0
568	5	0
869	0	10
344	0	2
1422	0	10
398	0	1
523	0	5
802	10	0
37	0	10
1234	1	0
2738	15	0
1334	5	0
1754	10	0
451	15	0
1334	5	0
3035	1	0
502	0	40
1755	5	0
1281	1	0
542	0	35
218

chain 1776731 HG03688_chrY 59904468 + 42108573 42127999 HG002_chrY 62432599 + 57872668 57892097 46
1236	0	1
11387	0	1
2855	0	2
1983	1	0
1964

chain 1744653 HG03688_chrY 59904468 + 37367938 37386501 HG002_chrY 62432599 + 38762666 38781245 47
6326	0	15
1532	0	1
10705

chain 1594180 HG03688_chrY 59904468 + 39319003 39336552 HG002_chrY 62432599 + 40722123 40739667 48
2413	0	7
886	2	0
1525	0	7
1655	0	1
4317	1	0
2420	1	0
905	2	0
373	7	0
356	2	0
1893	0	2
160	7	0
624

chain 1479873 HG03688_chrY 59904468 + 35594526 35610858 HG002_chrY 62432599 + 48537331 48553673 49
2401	0	7
178	1	0
2128	0	1
437	0	2
2420	0	2
4693	1	0
721	1	0
1406	0	1
1945

chain 1340426 HG03688_chrY 59904468 + 37390015 37404246 HG002_chrY 62432599 + 38781245 38795476 50
14231

chain 1330527 HG03688_chrY 59904468 + 37578453 37599821 HG002_chrY 62432599 + 38913185 38927440 51
7133	0	5
3568	3559	0
3414	3559	0
135

chain 1320018 HG03688_chrY 59904468 + 37981765 37995759 HG002_chrY 62432599 + 44450076 44464070 52
13994

chain 1315021 HG03688_chrY 59904468 + 57528700 57543187 HG002_chrY 62432599 + 60199797 60214284 53
470	0	1
954	0	1
3416	1	0
241	1	0
2177	1	0
1423	0	1
996	1	0
1423	0	1
996	1	0
1423	0	1
963

chain 1311141 HG03688_chrY 59904468 + 37934013 37947971 HG002_chrY 62432599 + 44434237 44448195 54
13958

chain 1308981 HG03688_chrY 59904468 + 57529861 57544211 HG002_chrY 62432599 + 46257401 46271754 55
7260	0	2
2453	1	0
3612	0	2
1024

chain 1261411 HG03688_chrY 59904468 + 37440880 37454322 HG002_chrY 62432599 + 43996677 44010124 56
2642	0	5
10800

chain 1192081 HG03688_chrY 59904468 + 37464699 37477966 HG002_chrY 62432599 + 38817119 38830445 57
2641	5	0
514	0	15
375	0	20
792	0	15
119	5	0
292	20	0
516	0	5
708	15	0
712	0	15
1167	0	15
119	5	0
587	0	10
211	0	15
1117	1	0
1494	0	15
119	5	0
808	0	5
708	15	0
197

chain 1182780 HG03688_chrY 59904468 + 37909443 37922038 HG002_chrY 62432599 + 43990723 44003343 58
9126	0	15
3004	0	10
465

chain 1131680 HG03688_chrY 59904468 + 37599826 37611835 HG002_chrY 62432599 + 38927440 38939454 59
11295	0	5
714

chain 1130738 HG03688_chrY 59904468 + 37599831 37611835 HG002_chrY 62432599 + 44130759 44142768 60
11290	0	5
714

chain 1096331 HG03688_chrY 59904468 + 33268513 33280502 HG002_chrY 62432599 + 31287227 31299206 61
1293	15	0
486	5	0
953	1	0
2605	20	0
1765	5	0
1789	0	5
565	0	15
565	0	1
634	0	15
1288

chain 1010227 HG03688_chrY 59904468 + 33217536 33228587 HG002_chrY 62432599 + 31235882 31247036 62
1142	0	5
81	0	10
2310	0	1
842	0	15
417	5	0
1766	0	25
513	0	1
852	0	15
290	0	5
81	0	10
1815	0	20
495	0	1
442

chain 984320 HG03688_chrY 59904468 + 33345251 33355956 HG002_chrY 62432599 + 31363976 31374668 63
1358	0	15
417	15	0
1122	0	1
2493	10	0
1750	0	5
1762	10	0
1122	0	1
646

chain 906365 HG03688_chrY 59904468 + 46630444 46641390 HG002_chrY 62432599 + 40708851 40718792 64
3047	0	2
1689	1009	0
1029	0	2
4172

chain 900347 HG03688_chrY 59904468 + 33894648 33904418 HG002_chrY 62432599 + 41440774 41450544 65
9770

chain 888423 HG03688_chrY 59904468 + 37615414 37643086 HG002_chrY 62432599 + 43771977 43781939 66
1431	0	1
510	0	5
883	0	15
725	15	0
2865	0	15
2315	17731	0
1197

chain 809975 HG03688_chrY 59904468 + 34034640 34043503 HG002_chrY 62432599 + 46829107 46837930 67
2237	0	5
1317	15	0
417	5	0
1425	15	0
336	0	5
1371	15	0
1710

chain 792700 HG03688_chrY 59904468 + 42131310 42140002 HG002_chrY 62432599 + 57892988 57901682 68
3164	0	2
5528

chain 788757 HG03688_chrY 59904468 + 57544213 57552861 HG002_chrY 62432599 + 46271754 46280408 69
2586	0	2
1450	2	0
675	0	3
290	0	2
1281	2	0
1078	0	1
58	0	2
1226

chain 786512 HG03688_chrY 59904468 + 37707362 37716114 HG002_chrY 62432599 + 43830282 43839036 70
122	2	0
6978	0	2
278	0	2
1372

chain 710705 HG03688_chrY 59904468 + 37882552 37890096 HG002_chrY 62432599 + 44404054 44411588 71
226	10	0
7308

chain 710364 HG03688_chrY 59904468 + 57618466 57626300 HG002_chrY 62432599 + 46345947 46353804 72
2423	0	7
2251	0	2
160	0	7
2413	0	7
587

chain 708444 HG03688_chrY 59904468 + 33230531 33238325 HG002_chrY 62432599 + 31248986 31256820 73
671	0	20
1343	0	15
190	0	15
743	10	0
1263	15	0
1353	0	15
2206

chain 700865 HG03688_chrY 59904468 + 57628122 57635795 HG002_chrY 62432599 + 46355636 46363316 74
2413	0	7
5260

chain 691952 HG03688_chrY 59904468 + 37914705 37922038 HG002_chrY 62432599 + 44422000 44429333 75
7333

chain 670218 HG03688_chrY 59904468 + 37571340 37578448 HG002_chrY 62432599 + 38906077 38913185 76
7108

chain 656730 HG03688_chrY 59904468 + 48875253 48882599 HG002_chrY 62432599 + 51525896 51533281 77
1421	15	0
451	5	0
243	0	15
335	0	5
39	0	5
138	1	0
661	0	15
93	0	10
395	0	15
1138	15	0
451	5	0
243	0	15
374	0	10
788	0	15
119	5	0
292	20	0
99

chain 648338 HG03688_chrY 59904468 + 57611249 57618466 HG002_chrY 62432599 + 46338815 46345940 78
2055	104	0
639	0	3
2018	0	7
2251	0	2
150

chain 645842 HG03688_chrY 59904468 + 37666327 37673170 HG002_chrY 62432599 + 44172335 44179178 79
6843

chain 639215 HG03688_chrY 59904468 + 37284584 37294805 HG002_chrY 62432599 + 38686296 38693282 80
5583	3235	0
1403

chain 594946 HG03688_chrY 59904468 + 33887513 33894226 HG002_chrY 62432599 + 41433641 41440347 81
148	2	0
2149	2	0
2174	1	0
633	1	0
512	1	0
1090

chain 554670 HG03688_chrY 59904468 + 37479842 37486002 HG002_chrY 62432599 + 38832301 38838477 82
808	0	20
708	15	0
197	15	0
212	1	0
643	0	25
131	0	1
115	0	15
1042	0	1
929	15	0
1329

chain 531228 HG03688_chrY 59904468 + 33257426 33263198 HG002_chrY 62432599 + 31276093 31281876 83
2224	0	5
1804	10	0
240	0	1
1127	0	15
367

chain 526637 HG03688_chrY 59904468 + 57522784 57528700 HG002_chrY 62432599 + 60193870 60199796 84
102	0	1
1237	0	5
21	0	2
1144	0	1
996	1	0
1103	0	1
319	0	1
993

chain 489684 HG03688_chrY 59904468 + 37667984 37673170 HG002_chrY 62432599 + 43781939 43787125 85
5186

chain 475830 HG03688_chrY 59904468 + 56325684 56330869 HG002_chrY 62432599 + 59451945 59457124 86
1600	15	0
526	1	0
1805	0	10
1238

chain 451943 HG03688_chrY 59904468 + 33340347 33345251 HG002_chrY 62432599 + 31359052 31363971 87
2693	0	15
2211

chain 438431 HG03688_chrY 59904468 + 33251278 33256078 HG002_chrY 62432599 + 31269890 31274710 88
1251	10	0
240	0	15
1093	0	15
2206

chain 425035 HG03688_chrY 59904468 + 33356696 33361315 HG002_chrY 62432599 + 31375418 31380031 89
1055	0	10
1293	15	0
1439	1	0
816

chain 420910 HG03688_chrY 59904468 + 37415220 37419688 HG002_chrY 62432599 + 38799383 38803851 90
4468

chain 413427 HG03688_chrY 59904468 + 33240611 33245123 HG002_chrY 62432599 + 31259151 31263673 91
1273	5	0
1348	0	15
1886

chain 397066 HG03688_chrY 59904468 + 37940009 37944293 HG002_chrY 62432599 + 44003612 44007881 92
2775	10	0
922	5	0
572

chain 394358 HG03688_chrY 59904468 + 33263198 33267459 HG002_chrY 62432599 + 31281881 31286162 93
3595	0	3
2	0	2
529	0	15
135

chain 373779 HG03688_chrY 59904468 + 37922038 37926022 HG002_chrY 62432599 + 44429334 44433318 94
3984

chain 367242 HG03688_chrY 59904468 + 37411308 37415215 HG002_chrY 62432599 + 38795476 38799383 95
3907

chain 364410 HG03688_chrY 59904468 + 48882599 48886615 HG002_chrY 62432599 + 51533296 51537302 96
1852	0	15
354	0	10
917	15	0
292	20	0
566

chain 361738 HG03688_chrY 59904468 + 46626494 46630442 HG002_chrY 62432599 + 40704903 40708851 97
3948

chain 351051 HG03688_chrY 59904468 + 33245124 33248980 HG002_chrY 62432599 + 31263673 31267577 98
294	0	35
505	0	2
847	0	15
412	5	0
1122	0	1
671

chain 330703 HG03688_chrY 59904468 + 37425839 37429393 HG002_chrY 62432599 + 43992206 43995760 99
3554

chain 330134 HG03688_chrY 59904468 + 37461150 37464699 HG002_chrY 62432599 + 38813561 38817109 100
1286	1	0
2262

chain 327277 HG03688_chrY 59904468 + 19417079 19420536 HG002_chrY 62432599 - 43575590 43579047 101
3457

chain 327138 HG03688_chrY 59904468 + 33285925 33289474 HG002_chrY 62432599 + 31304612 31308176 102
464	0	10
1737	0	5
1348

chain 326116 HG03688_chrY 59904468 + 34029690 34033244 HG002_chrY 62432599 + 46824158 46827721 103
1835	0	10
1023	1	0
695

chain 322961 HG03688_chrY 59904468 + 15485481 15488895 HG002_chrY 62432599 - 47507064 47510478 104
3414

chain 320070 HG03688_chrY 59904468 + 37443497 37447046 HG002_chrY 62432599 + 38806478 38809997 105
1206	20	0
313	10	0
890	15	0
741	0	15
354

chain 305367 HG03688_chrY 59904468 + 31027414 31030770 HG002_chrY 62432599 + 30351649 30355008 106
307	6	0
163	0	15
510	1	0
1259	0	5
42	10	0
1058

chain 293574 HG03688_chrY 59904468 + 57524144 57527446 HG002_chrY 62432599 + 46251676 46254979 107
3244	0	1
58

chain 290362 HG03688_chrY 59904468 + 33282750 33285925 HG002_chrY 62432599 + 31301438 31304597 108
478	15	0
1319	0	5
948	1	0
14	5	0
395

chain 286050 HG03688_chrY 59904468 + 57639871 57643048 HG002_chrY 62432599 + 46367395 46370572 109
3177

chain 284097 HG03688_chrY 59904468 + 56336744 56339818 HG002_chrY 62432599 + 59462974 59466052 110
1765	1	0
1257	0	5
51

chain 276210 HG03688_chrY 59904468 + 41751899 41755008 HG002_chrY 62432599 + 57529909 57533024 111
596	0	1
257	15	0
207	0	5
541	0	10
167	15	0
1081	0	20
230

chain 267814 HG03688_chrY 59904468 + 33337442 33340332 HG002_chrY 62432599 + 31356162 31359052 112
2890

chain 245941 HG03688_chrY 59904468 + 34045779 34048487 HG002_chrY 62432599 + 46840191 46842879 113
554	10	0
1230	10	0
904

chain 242562 HG03688_chrY 59904468 + 37440880 37443497 HG002_chrY 62432599 + 38803851 38806473 114
838	0	5
1779

chain 219521 HG03688_chrY 59904468 + 33335050 33337442 HG002_chrY 62432599 + 31353764 31356161 115
848	0	15
412	10	0
1122

chain 218849 HG03688_chrY 59904468 + 37704923 37707362 HG002_chrY 62432599 + 43827846 43830279 116
144	2	0
39	2	0
2097	2	0
153

chain 218543 HG03688_chrY 59904468 + 57635797 57638210 HG002_chrY 62432599 + 46363316 46365734 117
1659	0	2
22	0	3
732

chain 214233 HG03688_chrY 59904468 + 34864526 34866945 HG002_chrY 62432599 + 41376215 41378623 118
1175	2	0
106	7	0
699	2	0
428

chain 213587 HG03688_chrY 59904468 + 34866945 34869364 HG002_chrY 62432599 + 41378624 41381038 119
1792	5	0
622

chain 212746 HG03688_chrY 59904468 + 56334417 56336744 HG002_chrY 62432599 + 59460652 59462964 120
1559	15	0
753

chain 207850 HG03688_chrY 59904468 + 33238325 33240601 HG002_chrY 62432599 + 31256845 31259151 121
1343	0	15
190	0	15
743

chain 204352 HG03688_chrY 59904468 + 33280517 33282750 HG002_chrY 62432599 + 31299206 31301423 122
522	15	0
912	1	0
783

chain 202955 HG03688_chrY 59904468 + 26341150 26343288 HG002_chrY 62432599 - 36784188 36786326 123
2138

chain 202730 HG03688_chrY 59904468 + 24732060 24734198 HG002_chrY 62432599 - 38399338 38401476 124
2138

chain 200960 HG03688_chrY 59904468 + 33248980 33251159 HG002_chrY 62432599 + 31267597 31269796 125
1533	0	15
207	0	5
439

chain 196498 HG03688_chrY 59904468 + 34043635 34045774 HG002_chrY 62432599 + 46838062 46840191 126
390	0	5
1317	15	0
417

chain 195222 HG03688_chrY 59904468 + 34862330 34864526 HG002_chrY 62432599 + 41374027 41376214 127
1060	7	0
700	2	0
427

chain 193814 HG03688_chrY 59904468 + 36586057 36588229 HG002_chrY 62432599 + 42664215 42666383 128
187	1	0
270	2	0
439	1	0
1272

chain 193068 HG03688_chrY 59904468 + 37447046 37449191 HG002_chrY 62432599 + 38810007 38812147 129
555	0	15
659	20	0
911

chain 179341 HG03688_chrY 59904468 + 37700514 37702502 HG002_chrY 62432599 + 43825860 43827846 130
1852	2	0
134

chain 178758 HG03688_chrY 59904468 + 37188190 37190152 HG002_chrY 62432599 + 35204445 35206407 131
1962

chain 177475 HG03688_chrY 59904468 + 37969218 37971099 HG002_chrY 62432599 + 44448195 44450076 132
1881

chain 174653 HG03688_chrY 59904468 + 33228592 33230531 HG002_chrY 62432599 + 31247036 31248985 133
400	0	15
412	5	0
1122

chain 174557 HG03688_chrY 59904468 + 41753079 41755008 HG002_chrY 62432599 + 52502018 52503957 134
603	15	0
1081	0	25
230

chain 170653 HG03688_chrY 59904468 + 57521922 57524144 HG002_chrY 62432599 + 46249733 46251674 135
574	288	0
102	0	1
986	0	1
251	0	5
21

chain 167007 HG03688_chrY 59904468 + 57626301 57628122 HG002_chrY 62432599 + 46353804 46355629 136
1721	0	4
100

chain 166330 HG03688_chrY 59904468 + 37477981 37479837 HG002_chrY 62432599 + 38830445 38832301 137
899	15	0
823	0	15
119

chain 157031 HG03688_chrY 59904468 + 34027533 34029227 HG002_chrY 62432599 + 46821960 46823670 138
861	0	1
16	0	15
817

chain 155472 HG03688_chrY 59904468 + 33215852 33217536 HG002_chrY 62432599 + 31234152 31235881 139
630	0	10
544	0	35
510

chain 152500 HG03688_chrY 59904468 + 57638212 57639871 HG002_chrY 62432599 + 46365734 46367393 140
1659

chain 144659 HG03688_chrY 59904468 + 59897350 59899004 HG002_chrY 62432599 - 62430952 62432598 141
16	0	1
26	1	0
6	1	0
6	1	0
6	1	0
12	1	0
42	2	0
11	1	0
10	0	1
89	1	0
18	1	0
57	1	0
99	0	1
1245

chain 142672 HG03688_chrY 59904468 + 36198984 36200544 HG002_chrY 62432599 + 42279917 42281477 142
1560

chain 135401 HG03688_chrY 59904468 + 41755008 41756508 HG002_chrY 62432599 + 57533039 57534549 143
578	0	15
109	5	0
808

chain 130716 HG03688_chrY 59904468 + 37456227 37457641 HG002_chrY 62432599 + 38812147 38813561 144
1414

chain 130011 HG03688_chrY 59904468 + 37890097 37902300 HG002_chrY 62432599 + 43989152 43990723 145
875	3549	0
1	7083	0
695

chain 128504 HG03688_chrY 59904468 + 36200569 36201953 HG002_chrY 62432599 + 42281477 42282861 146
1384

chain 127700 HG03688_chrY 59904468 + 37152698 37154084 HG002_chrY 62432599 + 38092196 38093582 147
1386

chain 126993 HG03688_chrY 59904468 + 34033244 34034625 HG002_chrY 62432599 + 46827726 46829107 148
1381

chain 124916 HG03688_chrY 59904468 + 33256078 33257426 HG002_chrY 62432599 + 31274715 31276078 149
255	0	15
1093

chain 114438 HG03688_chrY 59904468 + 57527446 57528700 HG002_chrY 62432599 + 46254981 46256235 150
1254

chain 110969 HG03688_chrY 59904468 + 46625244 46626494 HG002_chrY 62432599 + 40703650 40704902 151
363	0	5
652	3	0
232

chain 104301 HG03688_chrY 59904468 + 31025523 31026641 HG002_chrY 62432599 + 30476400 30477518 152
1118

chain 102853 HG03688_chrY 59904468 + 57528700 57529861 HG002_chrY 62432599 + 46256237 46257399 153
470	0	1
691

chain 102124 HG03688_chrY 59904468 + 36202340 36203446 HG002_chrY 62432599 + 42283253 42284359 154
1106

chain 101196 HG03688_chrY 59904468 + 56332432 56333545 HG002_chrY 62432599 + 59458667 59459790 155
753	0	10
360

chain 94751 HG03688_chrY 59904468 + 33267469 33268513 HG002_chrY 62432599 + 31286162 31287217 156
160	0	1
759	0	10
125

chain 87365 HG03688_chrY 59904468 + 33457602 33458532 HG002_chrY 62432599 + 31494127 31495057 157
930

chain 87332 HG03688_chrY 59904468 + 56330879 56331827 HG002_chrY 62432599 + 59457124 59458072 158
948

chain 85190 HG03688_chrY 59904468 + 37436419 37437351 HG002_chrY 62432599 + 43995760 43996677 159
225	15	0
692

chain 84585 HG03688_chrY 59904468 + 58013653 58014607 HG002_chrY 62432599 + 60258834 60259788 160
954

chain 82808 HG03688_chrY 59904468 + 42130417 42131308 HG002_chrY 62432599 + 57892097 57892988 161
891

chain 81582 HG03688_chrY 59904468 + 35613278 35614190 HG002_chrY 62432599 + 48553673 48554585 162
912

chain 79150 HG03688_chrY 59904468 + 56333545 56334397 HG002_chrY 62432599 + 59459800 59460652 163
852

chain 77281 HG03688_chrY 59904468 + 41755700 41756550 HG002_chrY 62432599 + 52504674 52505529 164
808	0	5
42

chain 76618 HG03688_chrY 59904468 + 33334216 33335050 HG002_chrY 62432599 + 31352929 31353763 165
834

chain 66317 HG03688_chrY 59904468 + 41756508 41757229 HG002_chrY 62432599 + 57534554 57535275 166
721

chain 66296 HG03688_chrY 59904468 + 33355956 33356686 HG002_chrY 62432599 + 31374673 31375418 167
595	0	15
135

chain 63756 HG03688_chrY 59904468 + 33886791 33887513 HG002_chrY 62432599 + 41432919 41433639 168
603	2	0
117

chain 63384 HG03688_chrY 59904468 + 57552861 57553577 HG002_chrY 62432599 + 46280410 46281126 169
716

chain 61983 HG03688_chrY 59904468 + 41755008 41755695 HG002_chrY 62432599 + 52503972 52504674 170
579	0	15
108

chain 58350 HG03688_chrY 59904468 + 37929849 37930469 HG002_chrY 62432599 + 44433617 44434237 171
620

chain 57502 HG03688_chrY 59904468 + 36203446 36204076 HG002_chrY 62432599 + 42284360 42284990 172
630

chain 54677 HG03688_chrY 59904468 + 56331827 56332417 HG002_chrY 62432599 + 59458077 59458667 173
590

chain 50404 HG03688_chrY 59904468 + 42349411 42350008 HG002_chrY 62432599 + 53104173 53104766 174
544	4	0
49

chain 49084 HG03688_chrY 59904468 + 37570815 37571335 HG002_chrY 62432599 + 38905557 38906077 175
520

chain 43354 HG03688_chrY 59904468 + 34029227 34029690 HG002_chrY 62432599 + 46823685 46824148 176
463

chain 42086 HG03688_chrY 59904468 + 37680437 37680893 HG002_chrY 62432599 + 36244019 36244475 177
456

chain 41763 HG03688_chrY 59904468 + 34048487 34048936 HG002_chrY 62432599 + 46842884 46843333 178
449

chain 37477 HG03688_chrY 59904468 + 33894226 33894646 HG002_chrY 62432599 + 41440354 41440774 179
420

chain 34698 HG03688_chrY 59904468 + 37219882 37220282 HG002_chrY 62432599 + 43789048 43789450 180
239	0	2
161

chain 33404 HG03688_chrY 59904468 + 36201953 36202330 HG002_chrY 62432599 + 42282866 42283253 181
128	0	15
197	5	0
47

chain 27808 HG03688_chrY 59904468 + 38115289 38115584 HG002_chrY 62432599 + 44564312 44564607 182
295

chain 26937 HG03688_chrY 59904468 + 37472011 37472302 HG002_chrY 62432599 + 44010124 44010415 183
291

chain 25652 HG03688_chrY 59904468 + 37926022 37926316 HG002_chrY 62432599 + 44433323 44433617 184
294

chain 24450 HG03688_chrY 59904468 + 37922038 37922321 HG002_chrY 62432599 + 44003344 44003612 185
59	15	0
209

chain 16114 HG03688_chrY 59904468 + 36300222 36300395 HG002_chrY 62432599 + 34173652 34173825 186
173

chain 15878 HG03688_chrY 59904468 + 1139486 1139678 HG002_chrY 62432599 + 1153461 1153652 187
17	1	0
174

chain 15754 HG03688_chrY 59904468 + 35674836 35675011 HG002_chrY 62432599 + 33523455 33523630 188
175

chain 13468 HG03688_chrY 59904468 + 37680293 37680437 HG002_chrY 62432599 + 36173237 36173381 189
144

chain 10874 HG03688_chrY 59904468 + 34043503 34043620 HG002_chrY 62432599 + 46837945 46838062 190
117

chain 8551 HG03688_chrY 59904468 + 33251174 33251268 HG002_chrY 62432599 + 31269796 31269890 191
94

chain 5139 HG03688_chrY 59904468 + 43425457 43425511 HG002_chrY 62432599 + 53750414 53750468 192
54