##gff-version 3
HG002_chrY	Liftoff	gene	99009	100712	.	-	.	ID=hg002_chrY_paternal_1;gene_name=LOC124905300;gene_biotype=protein_coding;origin_ID=LOC124905300;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.1_0
HG002_chrY	Liftoff	transcript	99009	100712	.	-	.	ID=hg002_chrY_paternal_1.1;Parent=hg002_chrY_paternal_1;transcript_biotype=protein_coding;origin_ID=XM_047442785.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_1;gene_name=LOC124905300;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_1.1;transcript_name=hg002_chrY_paternal_1.1
HG002_chrY	Liftoff	exon	99009	99536	.	-	.	Parent=hg002_chrY_paternal_1.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	99777	100147	.	-	.	Parent=hg002_chrY_paternal_1.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	100455	100492	.	-	.	Parent=hg002_chrY_paternal_1.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	100672	100712	.	-	.	Parent=hg002_chrY_paternal_1.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	99009	99536	.	-	0	Parent=hg002_chrY_paternal_1.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	99777	100147	.	-	2	Parent=hg002_chrY_paternal_1.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	100455	100492	.	-	1	Parent=hg002_chrY_paternal_1.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	100672	100712	.	-	0	Parent=hg002_chrY_paternal_1.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	100071	126722	.	+	.	ID=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;origin_ID=PLCXD1_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=9;extra_copy_number=0;copy_num_ID=REF.chrY.2_0
HG002_chrY	Liftoff	transcript	100071	126722	.	+	.	ID=hg002_chrY_paternal_2.1;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=NM_001370370.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.1;transcript_name=hg002_chrY_paternal_2.1
HG002_chrY	Liftoff	exon	100071	100109	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	105040	105242	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	100071	126722	.	+	.	ID=hg002_chrY_paternal_2.2;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=NM_001370371.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.2;transcript_name=hg002_chrY_paternal_2.2
HG002_chrY	Liftoff	exon	100071	100109	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	100071	126722	.	+	.	ID=hg002_chrY_paternal_2.3;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=NM_001370372.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.3;transcript_name=hg002_chrY_paternal_2.3
HG002_chrY	Liftoff	exon	100071	100109	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	105040	105242	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	100071	126722	.	+	.	ID=hg002_chrY_paternal_2.4;Parent=hg002_chrY_paternal_2;transcript_biotype=transcript;origin_ID=NR_028057.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.4;transcript_name=hg002_chrY_paternal_2.4
HG002_chrY	Liftoff	exon	100071	100109	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	105040	105242	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	122756	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	125959	126722	.	+	.	Parent=hg002_chrY_paternal_2.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	100468	126722	.	+	.	ID=hg002_chrY_paternal_2.5;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=XM_047442741.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.5;transcript_name=hg002_chrY_paternal_2.5
HG002_chrY	Liftoff	exon	100468	100482	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	105040	105242	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	104717	126722	.	+	.	ID=hg002_chrY_paternal_2.6;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=XM_011545633.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.6;transcript_name=hg002_chrY_paternal_2.6
HG002_chrY	Liftoff	exon	104717	104814	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	105040	105242	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	104939	126722	.	+	.	ID=hg002_chrY_paternal_2.7;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=NM_018390.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.7;transcript_name=hg002_chrY_paternal_2.7
HG002_chrY	Liftoff	exon	104939	105242	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	104939	126722	.	+	.	ID=hg002_chrY_paternal_2.8;Parent=hg002_chrY_paternal_2;transcript_biotype=transcript;origin_ID=NR_163416.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.8;transcript_name=hg002_chrY_paternal_2.8
HG002_chrY	Liftoff	exon	104939	105242	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	123143	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	125255	126722	.	+	.	Parent=hg002_chrY_paternal_2.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	107023	126722	.	+	.	ID=hg002_chrY_paternal_2.9;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=NM_001370373.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.9;transcript_name=hg002_chrY_paternal_2.9
HG002_chrY	Liftoff	exon	107023	107065	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	107063	126722	.	+	.	ID=hg002_chrY_paternal_2.10;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=XM_024452491.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.10;transcript_name=hg002_chrY_paternal_2.10
HG002_chrY	Liftoff	exon	107063	107320	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	107456	126722	.	+	.	ID=hg002_chrY_paternal_2.11;Parent=hg002_chrY_paternal_2;transcript_biotype=protein_coding;origin_ID=XM_047442740.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_2;gene_name=PLCXD1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_2.11;transcript_name=hg002_chrY_paternal_2.11
HG002_chrY	Liftoff	exon	107456	107801	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	107935	108082	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	112719	112855	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	114634	114762	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	115361	115516	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	116897	117080	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	122461	126722	.	+	.	Parent=hg002_chrY_paternal_2.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	107956	108082	.	+	0	Parent=hg002_chrY_paternal_2.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	112719	112855	.	+	2	Parent=hg002_chrY_paternal_2.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	114634	114762	.	+	0	Parent=hg002_chrY_paternal_2.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	115361	115516	.	+	0	Parent=hg002_chrY_paternal_2.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	116897	117080	.	+	0	Parent=hg002_chrY_paternal_2.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	122461	122699	.	+	2	Parent=hg002_chrY_paternal_2.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	128125	144925	.	-	.	ID=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;origin_ID=GTPBP6_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=5;extra_copy_number=0;copy_num_ID=REF.chrY.3_0
HG002_chrY	Liftoff	transcript	128125	142975	.	-	.	ID=hg002_chrY_paternal_3.1;Parent=hg002_chrY_paternal_3;transcript_biotype=protein_coding;origin_ID=XM_047442762.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_3.1;transcript_name=hg002_chrY_paternal_3.1
HG002_chrY	Liftoff	exon	128125	128563	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	130726	130878	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	131098	131246	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	134785	134993	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	135995	136393	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	137619	137686	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	138359	138489	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	138695	138765	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	142910	142975	.	-	.	Parent=hg002_chrY_paternal_3.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	128440	128563	.	-	1	Parent=hg002_chrY_paternal_3.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	130726	130878	.	-	1	Parent=hg002_chrY_paternal_3.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	131098	131246	.	-	0	Parent=hg002_chrY_paternal_3.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	134785	134993	.	-	2	Parent=hg002_chrY_paternal_3.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	135995	136393	.	-	2	Parent=hg002_chrY_paternal_3.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	137619	137686	.	-	1	Parent=hg002_chrY_paternal_3.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138359	138489	.	-	0	Parent=hg002_chrY_paternal_3.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138695	138712	.	-	0	Parent=hg002_chrY_paternal_3.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	128125	144925	.	-	.	ID=hg002_chrY_paternal_3.2;Parent=hg002_chrY_paternal_3;transcript_biotype=protein_coding;origin_ID=NM_012227.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_3.2;transcript_name=hg002_chrY_paternal_3.2
HG002_chrY	Liftoff	exon	128125	128563	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	130726	130878	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	131098	131246	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	134785	134993	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	136235	136393	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	137619	137686	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	138359	138489	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	138695	138765	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	143044	143181	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	144568	144925	.	-	.	Parent=hg002_chrY_paternal_3.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	128440	128563	.	-	1	Parent=hg002_chrY_paternal_3.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	130726	130878	.	-	1	Parent=hg002_chrY_paternal_3.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	131098	131246	.	-	0	Parent=hg002_chrY_paternal_3.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	134785	134993	.	-	2	Parent=hg002_chrY_paternal_3.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	136235	136393	.	-	2	Parent=hg002_chrY_paternal_3.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	137619	137686	.	-	1	Parent=hg002_chrY_paternal_3.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138359	138489	.	-	0	Parent=hg002_chrY_paternal_3.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138695	138765	.	-	2	Parent=hg002_chrY_paternal_3.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	143044	143181	.	-	2	Parent=hg002_chrY_paternal_3.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	144568	144916	.	-	0	Parent=hg002_chrY_paternal_3.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	128125	144925	.	-	.	ID=hg002_chrY_paternal_3.3;Parent=hg002_chrY_paternal_3;transcript_biotype=protein_coding;origin_ID=XM_047442759.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_3.3;transcript_name=hg002_chrY_paternal_3.3
HG002_chrY	Liftoff	exon	128125	128563	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	130726	130878	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	131098	131246	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	134785	134993	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	135995	136393	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	137619	137686	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	138359	138489	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	138695	138765	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	143044	143181	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	144568	144925	.	-	.	Parent=hg002_chrY_paternal_3.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	128440	128563	.	-	1	Parent=hg002_chrY_paternal_3.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	130726	130878	.	-	1	Parent=hg002_chrY_paternal_3.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	131098	131246	.	-	0	Parent=hg002_chrY_paternal_3.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	134785	134993	.	-	2	Parent=hg002_chrY_paternal_3.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	135995	136393	.	-	2	Parent=hg002_chrY_paternal_3.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	137619	137686	.	-	1	Parent=hg002_chrY_paternal_3.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138359	138489	.	-	0	Parent=hg002_chrY_paternal_3.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138695	138765	.	-	2	Parent=hg002_chrY_paternal_3.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	143044	143181	.	-	2	Parent=hg002_chrY_paternal_3.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	144568	144916	.	-	0	Parent=hg002_chrY_paternal_3.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	128125	144925	.	-	.	ID=hg002_chrY_paternal_3.4;Parent=hg002_chrY_paternal_3;transcript_biotype=protein_coding;origin_ID=XM_047442760.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_3.4;transcript_name=hg002_chrY_paternal_3.4
HG002_chrY	Liftoff	exon	128125	128563	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	130726	130878	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	131098	131246	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	134785	134993	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	135995	136393	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	137619	137686	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	138359	138489	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	138695	138765	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	143044	143181	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	143409	143614	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	144568	144925	.	-	.	Parent=hg002_chrY_paternal_3.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	128440	128563	.	-	1	Parent=hg002_chrY_paternal_3.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	130726	130878	.	-	1	Parent=hg002_chrY_paternal_3.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	131098	131246	.	-	0	Parent=hg002_chrY_paternal_3.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	134785	134993	.	-	2	Parent=hg002_chrY_paternal_3.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	135995	136393	.	-	2	Parent=hg002_chrY_paternal_3.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	137619	137686	.	-	1	Parent=hg002_chrY_paternal_3.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138359	138489	.	-	0	Parent=hg002_chrY_paternal_3.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138695	138765	.	-	2	Parent=hg002_chrY_paternal_3.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	143044	143113	.	-	0	Parent=hg002_chrY_paternal_3.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	128125	144925	.	-	.	ID=hg002_chrY_paternal_3.5;Parent=hg002_chrY_paternal_3;transcript_biotype=protein_coding;origin_ID=XM_047442761.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_3;gene_name=GTPBP6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_3.5;transcript_name=hg002_chrY_paternal_3.5
HG002_chrY	Liftoff	exon	128125	128563	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	130726	130878	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	131098	131246	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	134785	134993	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	135995	136393	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	137619	137686	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	138359	138489	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	138695	138765	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	143044	143181	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	143409	143549	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	144568	144925	.	-	.	Parent=hg002_chrY_paternal_3.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	128440	128563	.	-	1	Parent=hg002_chrY_paternal_3.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	130726	130878	.	-	1	Parent=hg002_chrY_paternal_3.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	131098	131246	.	-	0	Parent=hg002_chrY_paternal_3.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	134785	134993	.	-	2	Parent=hg002_chrY_paternal_3.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	135995	136393	.	-	2	Parent=hg002_chrY_paternal_3.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	137619	137686	.	-	1	Parent=hg002_chrY_paternal_3.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138359	138489	.	-	0	Parent=hg002_chrY_paternal_3.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	138695	138765	.	-	2	Parent=hg002_chrY_paternal_3.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	143044	143113	.	-	0	Parent=hg002_chrY_paternal_3.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	145274	147458	.	+	.	ID=hg002_chrY_paternal_4;gene_name=LINC00685;gene_biotype=lncRNA;origin_ID=LINC00685_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.4_0
HG002_chrY	Liftoff	transcript	145274	147458	.	+	.	ID=hg002_chrY_paternal_4.1;Parent=hg002_chrY_paternal_4;transcript_biotype=lnc_RNA;origin_ID=NR_027231.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_4;gene_name=LINC00685;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_4.1;transcript_name=hg002_chrY_paternal_4.1
HG002_chrY	Liftoff	exon	145274	145677	.	+	.	Parent=hg002_chrY_paternal_4.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	146334	147458	.	+	.	Parent=hg002_chrY_paternal_4.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	145274	147458	.	+	.	ID=hg002_chrY_paternal_4.2;Parent=hg002_chrY_paternal_4;transcript_biotype=lnc_RNA;origin_ID=NR_027232.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_4;gene_name=LINC00685;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_4.2;transcript_name=hg002_chrY_paternal_4.2
HG002_chrY	Liftoff	exon	145274	147458	.	+	.	Parent=hg002_chrY_paternal_4.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	164530	220772	.	-	.	ID=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;origin_ID=PPP2R3B_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=8;extra_copy_number=0;copy_num_ID=REF.chrY.5_0
HG002_chrY	Liftoff	transcript	164530	210016	.	-	.	ID=hg002_chrY_paternal_5.1;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442728.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.1;transcript_name=hg002_chrY_paternal_5.1
HG002_chrY	Liftoff	exon	164530	165114	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	207339	210016	.	-	.	Parent=hg002_chrY_paternal_5.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165114	.	-	1	Parent=hg002_chrY_paternal_5.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192490	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	207339	207578	.	-	0	Parent=hg002_chrY_paternal_5.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164530	220772	.	-	.	ID=hg002_chrY_paternal_5.2;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=NM_013239.5_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.2;transcript_name=hg002_chrY_paternal_5.2
HG002_chrY	Liftoff	exon	164530	165114	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	220233	220772	.	-	.	Parent=hg002_chrY_paternal_5.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165114	.	-	1	Parent=hg002_chrY_paternal_5.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192490	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	220233	220556	.	-	0	Parent=hg002_chrY_paternal_5.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164835	199232	.	-	.	ID=hg002_chrY_paternal_5.3;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442725.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.3;transcript_name=hg002_chrY_paternal_5.3
HG002_chrY	Liftoff	exon	164835	165660	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	193155	193232	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	198677	199232	.	-	.	Parent=hg002_chrY_paternal_5.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165660	.	-	1	Parent=hg002_chrY_paternal_5.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192331	.	-	0	Parent=hg002_chrY_paternal_5.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164835	210016	.	-	.	ID=hg002_chrY_paternal_5.4;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442724.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.4;transcript_name=hg002_chrY_paternal_5.4
HG002_chrY	Liftoff	exon	164835	165660	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	207339	210016	.	-	.	Parent=hg002_chrY_paternal_5.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165660	.	-	1	Parent=hg002_chrY_paternal_5.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192490	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	207339	207578	.	-	0	Parent=hg002_chrY_paternal_5.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164835	220772	.	-	.	ID=hg002_chrY_paternal_5.5;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442723.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.5;transcript_name=hg002_chrY_paternal_5.5
HG002_chrY	Liftoff	exon	164835	165660	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	220233	220772	.	-	.	Parent=hg002_chrY_paternal_5.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165660	.	-	1	Parent=hg002_chrY_paternal_5.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192490	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	220233	220556	.	-	0	Parent=hg002_chrY_paternal_5.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164835	220772	.	-	.	ID=hg002_chrY_paternal_5.6;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442726.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.6;transcript_name=hg002_chrY_paternal_5.6
HG002_chrY	Liftoff	exon	164835	165660	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	193155	193232	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	220233	220772	.	-	.	Parent=hg002_chrY_paternal_5.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165660	.	-	1	Parent=hg002_chrY_paternal_5.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192331	.	-	0	Parent=hg002_chrY_paternal_5.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	164835	220772	.	-	.	ID=hg002_chrY_paternal_5.7;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_047442727.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.7;transcript_name=hg002_chrY_paternal_5.7
HG002_chrY	Liftoff	exon	164835	165660	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	193155	193232	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	218908	218971	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	220233	220772	.	-	.	Parent=hg002_chrY_paternal_5.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	164964	165660	.	-	1	Parent=hg002_chrY_paternal_5.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192331	.	-	0	Parent=hg002_chrY_paternal_5.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	165555	220772	.	-	.	ID=hg002_chrY_paternal_5.8;Parent=hg002_chrY_paternal_5;transcript_biotype=protein_coding;origin_ID=XM_011545630.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_5;gene_name=PPP2R3B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_5.8;transcript_name=hg002_chrY_paternal_5.8
HG002_chrY	Liftoff	exon	165555	166595	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	169201	169307	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	169375	169493	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	171360	171535	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	171902	171991	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	172478	172526	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	176138	176294	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	176796	176882	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	177323	177397	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	177856	177958	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	178212	178315	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	192305	192490	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	220233	220772	.	-	.	Parent=hg002_chrY_paternal_5.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	166475	166595	.	-	1	Parent=hg002_chrY_paternal_5.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169201	169307	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	169375	169493	.	-	2	Parent=hg002_chrY_paternal_5.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171360	171535	.	-	1	Parent=hg002_chrY_paternal_5.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	171902	171991	.	-	1	Parent=hg002_chrY_paternal_5.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	172478	172526	.	-	2	Parent=hg002_chrY_paternal_5.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176138	176294	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	176796	176882	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177323	177397	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	177856	177958	.	-	1	Parent=hg002_chrY_paternal_5.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	178212	178315	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	192305	192490	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	220233	220556	.	-	0	Parent=hg002_chrY_paternal_5.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	265205	311876	.	+	.	ID=hg002_chrY_paternal_6;gene_name=LOC102724521;gene_biotype=lncRNA;origin_ID=LOC102724521_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.6_0
HG002_chrY	Liftoff	transcript	265205	311876	.	+	.	ID=hg002_chrY_paternal_6.1;Parent=hg002_chrY_paternal_6;transcript_biotype=lnc_RNA;origin_ID=XR_001756015.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_6;gene_name=LOC102724521;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_6.1;transcript_name=hg002_chrY_paternal_6.1
HG002_chrY	Liftoff	exon	265205	265673	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	272135	272392	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	273881	273995	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	275532	275698	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	279244	279316	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	279550	279854	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	298381	298993	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	308659	308779	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	309832	310030	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	310637	311876	.	+	.	Parent=hg002_chrY_paternal_6.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	265449	281326	.	+	.	ID=hg002_chrY_paternal_6.2;Parent=hg002_chrY_paternal_6;transcript_biotype=lnc_RNA;origin_ID=XR_007068454.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_6;gene_name=LOC102724521;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_6.2;transcript_name=hg002_chrY_paternal_6.2
HG002_chrY	Liftoff	exon	265449	265673	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	272135	272392	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	273881	273995	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	275532	275698	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	279767	279854	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	280642	281326	.	+	.	Parent=hg002_chrY_paternal_6.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	367593	367953	.	-	.	ID=hg002_chrY_paternal_7;gene_name=FABP5P13;gene_biotype=pseudogene;origin_ID=FABP5P13_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.7_0
HG002_chrY	Liftoff	gene	393849	393965	.	-	.	ID=hg002_chrY_paternal_8;gene_name=KRT18P53;gene_biotype=pseudogene;origin_ID=KRT18P53_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.8_0
HG002_chrY	Liftoff	gene	473965	508447	.	+	.	ID=hg002_chrY_paternal_9;gene_name=SHOX;gene_biotype=protein_coding;origin_ID=SHOX_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.9_0
HG002_chrY	Liftoff	transcript	473965	508447	.	+	.	ID=hg002_chrY_paternal_9.1;Parent=hg002_chrY_paternal_9;transcript_biotype=protein_coding;origin_ID=NM_006883.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_9;gene_name=SHOX;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_9.1;transcript_name=hg002_chrY_paternal_9.1
HG002_chrY	Liftoff	exon	473965	474225	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	479731	480439	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	483883	484091	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	489917	489974	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	490095	490183	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	507822	508447	.	+	.	Parent=hg002_chrY_paternal_9.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	480163	480439	.	+	0	Parent=hg002_chrY_paternal_9.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	483883	484091	.	+	2	Parent=hg002_chrY_paternal_9.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	489917	489974	.	+	0	Parent=hg002_chrY_paternal_9.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	490095	490183	.	+	2	Parent=hg002_chrY_paternal_9.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	507822	507866	.	+	0	Parent=hg002_chrY_paternal_9.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	480056	500553	.	+	.	ID=hg002_chrY_paternal_9.2;Parent=hg002_chrY_paternal_9;transcript_biotype=protein_coding;origin_ID=NM_000451.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_9;gene_name=SHOX;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_9.2;transcript_name=hg002_chrY_paternal_9.2
HG002_chrY	Liftoff	exon	480056	480439	.	+	.	Parent=hg002_chrY_paternal_9.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	483883	484091	.	+	.	Parent=hg002_chrY_paternal_9.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	489917	489974	.	+	.	Parent=hg002_chrY_paternal_9.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	490095	490183	.	+	.	Parent=hg002_chrY_paternal_9.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	493431	500553	.	+	.	Parent=hg002_chrY_paternal_9.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	480163	480439	.	+	0	Parent=hg002_chrY_paternal_9.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	483883	484091	.	+	2	Parent=hg002_chrY_paternal_9.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	489917	489974	.	+	0	Parent=hg002_chrY_paternal_9.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	490095	490183	.	+	2	Parent=hg002_chrY_paternal_9.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	493431	493676	.	+	0	Parent=hg002_chrY_paternal_9.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	860025	860405	.	-	.	ID=hg002_chrY_paternal_10;gene_name=RPL14P5;gene_biotype=pseudogene;origin_ID=RPL14P5_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.10_0
HG002_chrY	Liftoff	gene	980898	982489	.	+	.	ID=hg002_chrY_paternal_11;gene_name=LOC100418703;gene_biotype=pseudogene;origin_ID=LOC100418703_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.11_0
HG002_chrY	Liftoff	gene	1029104	1031427	.	+	.	ID=hg002_chrY_paternal_12;gene_name=LOC652608;gene_biotype=pseudogene;origin_ID=LOC652608_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.12_0
HG002_chrY	Liftoff	gene	1046379	1068626	.	-	.	ID=hg002_chrY_paternal_13;gene_name=CRLF2;gene_biotype=protein_coding;origin_ID=CRLF2_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.13_0
HG002_chrY	Liftoff	transcript	1046379	1068626	.	-	.	ID=hg002_chrY_paternal_13.1;Parent=hg002_chrY_paternal_13;transcript_biotype=protein_coding;origin_ID=NM_001012288.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_13;gene_name=CRLF2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_13.1;transcript_name=hg002_chrY_paternal_13.1
HG002_chrY	Liftoff	exon	1046379	1047049	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1049119	1049203	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1052683	1052803	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1054500	1054662	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1058349	1058482	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1062405	1062571	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1068533	1068626	.	-	.	Parent=hg002_chrY_paternal_13.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1046786	1047049	.	-	0	Parent=hg002_chrY_paternal_13.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1049119	1049203	.	-	1	Parent=hg002_chrY_paternal_13.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1052683	1052803	.	-	2	Parent=hg002_chrY_paternal_13.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1054500	1054662	.	-	0	Parent=hg002_chrY_paternal_13.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1058349	1058482	.	-	2	Parent=hg002_chrY_paternal_13.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1062405	1062417	.	-	0	Parent=hg002_chrY_paternal_13.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1046379	1068626	.	-	.	ID=hg002_chrY_paternal_13.2;Parent=hg002_chrY_paternal_13;transcript_biotype=protein_coding;origin_ID=NM_022148.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_13;gene_name=CRLF2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_13.2;transcript_name=hg002_chrY_paternal_13.2
HG002_chrY	Liftoff	exon	1046379	1047049	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1049119	1049203	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1052683	1052803	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1054500	1054662	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1058349	1058482	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1062405	1062571	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1064775	1064877	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1068533	1068626	.	-	.	Parent=hg002_chrY_paternal_13.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1046786	1047049	.	-	0	Parent=hg002_chrY_paternal_13.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1049119	1049203	.	-	1	Parent=hg002_chrY_paternal_13.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1052683	1052803	.	-	2	Parent=hg002_chrY_paternal_13.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1054500	1054662	.	-	0	Parent=hg002_chrY_paternal_13.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1058349	1058482	.	-	2	Parent=hg002_chrY_paternal_13.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1062405	1062571	.	-	1	Parent=hg002_chrY_paternal_13.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1064775	1064877	.	-	2	Parent=hg002_chrY_paternal_13.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1068533	1068611	.	-	0	Parent=hg002_chrY_paternal_13.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1046379	1068626	.	-	.	ID=hg002_chrY_paternal_13.3;Parent=hg002_chrY_paternal_13;transcript_biotype=transcript;origin_ID=NR_110830.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_13;gene_name=CRLF2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_13.3;transcript_name=hg002_chrY_paternal_13.3
HG002_chrY	Liftoff	exon	1046379	1047049	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1049119	1049203	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1052683	1052803	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1054741	1055085	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1058349	1058482	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1062405	1062571	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1064775	1064874	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1068533	1068626	.	-	.	Parent=hg002_chrY_paternal_13.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1046379	1068626	.	-	.	ID=hg002_chrY_paternal_13.4;Parent=hg002_chrY_paternal_13;transcript_biotype=protein_coding;origin_ID=XM_011545634.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_13;gene_name=CRLF2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_13.4;transcript_name=hg002_chrY_paternal_13.4
HG002_chrY	Liftoff	exon	1046379	1047049	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1049119	1049203	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1052683	1052803	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1054500	1054662	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1058349	1058482	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1062405	1062571	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1064775	1064874	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1068533	1068626	.	-	.	Parent=hg002_chrY_paternal_13.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1046786	1047049	.	-	0	Parent=hg002_chrY_paternal_13.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1049119	1049203	.	-	1	Parent=hg002_chrY_paternal_13.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1052683	1052803	.	-	2	Parent=hg002_chrY_paternal_13.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1054500	1054662	.	-	0	Parent=hg002_chrY_paternal_13.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1058349	1058482	.	-	2	Parent=hg002_chrY_paternal_13.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1062405	1062571	.	-	1	Parent=hg002_chrY_paternal_13.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1064775	1064874	.	-	2	Parent=hg002_chrY_paternal_13.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1068533	1068611	.	-	0	Parent=hg002_chrY_paternal_13.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;origin_ID=CSF2RA_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=37;extra_copy_number=0;copy_num_ID=REF.chrY.14_0
HG002_chrY	Liftoff	transcript	1125365	1165776	.	+	.	ID=hg002_chrY_paternal_14.1;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001161531.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.1;transcript_name=hg002_chrY_paternal_14.1
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165463	1165776	.	+	.	Parent=hg002_chrY_paternal_14.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165463	1165570	.	+	0	Parent=hg002_chrY_paternal_14.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1165776	.	+	.	ID=hg002_chrY_paternal_14.2;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379155.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.2;transcript_name=hg002_chrY_paternal_14.2
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165463	1165776	.	+	.	Parent=hg002_chrY_paternal_14.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165463	1165570	.	+	0	Parent=hg002_chrY_paternal_14.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.3;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_172246.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.3;transcript_name=hg002_chrY_paternal_14.3
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169779	.	+	2	Parent=hg002_chrY_paternal_14.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.4;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_172247.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.4;transcript_name=hg002_chrY_paternal_14.4
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.5;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_172249.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.5;transcript_name=hg002_chrY_paternal_14.5
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.6;Parent=hg002_chrY_paternal_14;transcript_biotype=transcript;origin_ID=NR_027760.3_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.6;transcript_name=hg002_chrY_paternal_14.6
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.7;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001161529.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.7;transcript_name=hg002_chrY_paternal_14.7
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1140825	1140976	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.8;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001161530.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.8;transcript_name=hg002_chrY_paternal_14.8
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163096	1163197	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163096	1163197	.	+	2	Parent=hg002_chrY_paternal_14.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.9;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001161532.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.9;transcript_name=hg002_chrY_paternal_14.9
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147213	1147286	.	+	0	Parent=hg002_chrY_paternal_14.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.10;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379153.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.10;transcript_name=hg002_chrY_paternal_14.10
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163096	1163197	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163096	1163197	.	+	2	Parent=hg002_chrY_paternal_14.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.11;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379154.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.11;transcript_name=hg002_chrY_paternal_14.11
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163096	1163197	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163096	1163197	.	+	2	Parent=hg002_chrY_paternal_14.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.12;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379156.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.12;transcript_name=hg002_chrY_paternal_14.12
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.13;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379158.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.13;transcript_name=hg002_chrY_paternal_14.13
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133144	1133197	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.14;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379160.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.14;transcript_name=hg002_chrY_paternal_14.14
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.15;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379166.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.15;transcript_name=hg002_chrY_paternal_14.15
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153041	1153155	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1158837	1158899	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153041	1153155	.	+	2	Parent=hg002_chrY_paternal_14.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	1	Parent=hg002_chrY_paternal_14.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1158837	1158899	.	+	1	Parent=hg002_chrY_paternal_14.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.16;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379167.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.16;transcript_name=hg002_chrY_paternal_14.16
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1129202	1129323	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.16;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.17;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379168.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.17;transcript_name=hg002_chrY_paternal_14.17
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.17;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.18;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379169.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.18;transcript_name=hg002_chrY_paternal_14.18
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.18;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.18;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.18;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.18;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.18;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.19;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_006140.6_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.19;transcript_name=hg002_chrY_paternal_14.19
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.19;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.19;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.19;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.19;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.19;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.19;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.19;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1170125	.	+	.	ID=hg002_chrY_paternal_14.20;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_172245.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.20;transcript_name=hg002_chrY_paternal_14.20
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1169592	1170125	.	+	.	Parent=hg002_chrY_paternal_14.20;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.20;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.20;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.20;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.20;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.20;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1169592	1169669	.	+	0	Parent=hg002_chrY_paternal_14.20;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1182639	.	+	.	ID=hg002_chrY_paternal_14.21;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442714.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.21;transcript_name=hg002_chrY_paternal_14.21
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182439	1182457	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182639	.	+	.	Parent=hg002_chrY_paternal_14.21;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.21;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.21;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.21;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.21;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182439	1182457	.	+	0	Parent=hg002_chrY_paternal_14.21;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182562	.	+	2	Parent=hg002_chrY_paternal_14.21;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1182816	.	+	.	ID=hg002_chrY_paternal_14.22;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442710.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.22;transcript_name=hg002_chrY_paternal_14.22
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1182457	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182816	.	+	.	Parent=hg002_chrY_paternal_14.22;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.22;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.22;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.22;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.22;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.22;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182457	.	+	0	Parent=hg002_chrY_paternal_14.22;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182684	.	+	1	Parent=hg002_chrY_paternal_14.22;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1182816	.	+	.	ID=hg002_chrY_paternal_14.23;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442711.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.23;transcript_name=hg002_chrY_paternal_14.23
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1182457	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182816	.	+	.	Parent=hg002_chrY_paternal_14.23;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.23;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.23;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.23;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.23;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.23;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182457	.	+	0	Parent=hg002_chrY_paternal_14.23;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182684	.	+	1	Parent=hg002_chrY_paternal_14.23;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1182816	.	+	.	ID=hg002_chrY_paternal_14.24;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442712.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.24;transcript_name=hg002_chrY_paternal_14.24
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1182457	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182816	.	+	.	Parent=hg002_chrY_paternal_14.24;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.24;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.24;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.24;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.24;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.24;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182457	.	+	0	Parent=hg002_chrY_paternal_14.24;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182684	.	+	1	Parent=hg002_chrY_paternal_14.24;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.25;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379161.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.25;transcript_name=hg002_chrY_paternal_14.25
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182439	1183098	.	+	.	Parent=hg002_chrY_paternal_14.25;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.25;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.25;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.25;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.25;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.25;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.25;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.25;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.25;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182439	1182483	.	+	0	Parent=hg002_chrY_paternal_14.25;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.26;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379164.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.26;transcript_name=hg002_chrY_paternal_14.26
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1183098	.	+	.	Parent=hg002_chrY_paternal_14.26;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.26;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.26;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.26;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.26;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.26;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.26;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182461	.	+	0	Parent=hg002_chrY_paternal_14.26;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.27;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379165.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.27;transcript_name=hg002_chrY_paternal_14.27
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1183098	.	+	.	Parent=hg002_chrY_paternal_14.27;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.27;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.27;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.27;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.27;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.27;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.27;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.27;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.27;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.27;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.27;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182461	.	+	0	Parent=hg002_chrY_paternal_14.27;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.28;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_011545620.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.28;transcript_name=hg002_chrY_paternal_14.28
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182439	1183098	.	+	.	Parent=hg002_chrY_paternal_14.28;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.28;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.28;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.28;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.28;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.28;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.28;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.28;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.28;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.28;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.28;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182439	1182483	.	+	0	Parent=hg002_chrY_paternal_14.28;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.29;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_011545627.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.29;transcript_name=hg002_chrY_paternal_14.29
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1183098	.	+	.	Parent=hg002_chrY_paternal_14.29;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.29;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.29;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.29;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.29;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.29;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.29;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.29;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.29;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.29;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.30;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442715.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.30;transcript_name=hg002_chrY_paternal_14.30
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182439	1183098	.	+	.	Parent=hg002_chrY_paternal_14.30;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.30;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.30;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.30;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.30;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.30;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.30;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.30;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.30;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.30;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.30;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182439	1182483	.	+	0	Parent=hg002_chrY_paternal_14.30;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1183098	.	+	.	ID=hg002_chrY_paternal_14.31;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442718.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.31;transcript_name=hg002_chrY_paternal_14.31
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182439	1183098	.	+	.	Parent=hg002_chrY_paternal_14.31;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.31;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.31;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.31;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.31;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.31;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.31;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.31;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.31;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.31;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14.32;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379159.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.32;transcript_name=hg002_chrY_paternal_14.32
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1172459	1172565	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1184997	1185187	.	+	.	Parent=hg002_chrY_paternal_14.32;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.32;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.32;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.32;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.32;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.32;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.32;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.32;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.32;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.32;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.32;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1172459	1172527	.	+	0	Parent=hg002_chrY_paternal_14.32;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14.33;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379162.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.33;transcript_name=hg002_chrY_paternal_14.33
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1184997	1185187	.	+	.	Parent=hg002_chrY_paternal_14.33;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.33;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.33;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.33;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.33;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.33;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.33;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.33;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.33;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.33;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.33;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1184997	1185032	.	+	0	Parent=hg002_chrY_paternal_14.33;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14.34;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=NM_001379163.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.34;transcript_name=hg002_chrY_paternal_14.34
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133221	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1184997	1185187	.	+	.	Parent=hg002_chrY_paternal_14.34;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.34;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.34;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.34;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.34;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.34;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.34;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.34;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.34;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.34;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.34;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1184997	1185032	.	+	0	Parent=hg002_chrY_paternal_14.34;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14.35;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_011545628.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.35;transcript_name=hg002_chrY_paternal_14.35
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1184997	1185187	.	+	.	Parent=hg002_chrY_paternal_14.35;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.35;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.35;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.35;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.35;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.35;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.35;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.35;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.35;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165336	.	+	2	Parent=hg002_chrY_paternal_14.35;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1125365	1185187	.	+	.	ID=hg002_chrY_paternal_14.36;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442716.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.36;transcript_name=hg002_chrY_paternal_14.36
HG002_chrY	Liftoff	exon	1125365	1125430	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1133134	1133197	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1184997	1185187	.	+	.	Parent=hg002_chrY_paternal_14.36;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.36;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.36;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.36;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.36;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.36;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.36;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.36;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.36;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.36;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.36;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1184997	1185032	.	+	0	Parent=hg002_chrY_paternal_14.36;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1140652	1182816	.	+	.	ID=hg002_chrY_paternal_14.37;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442713.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.37;transcript_name=hg002_chrY_paternal_14.37
HG002_chrY	Liftoff	exon	1140652	1140976	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1141094	1141195	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1182457	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182816	.	+	.	Parent=hg002_chrY_paternal_14.37;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1141120	1141195	.	+	0	Parent=hg002_chrY_paternal_14.37;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144184	1144326	.	+	2	Parent=hg002_chrY_paternal_14.37;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.37;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.37;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.37;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.37;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.37;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.37;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.37;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.37;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182457	.	+	0	Parent=hg002_chrY_paternal_14.37;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182684	.	+	1	Parent=hg002_chrY_paternal_14.37;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1141219	1182820	.	+	.	ID=hg002_chrY_paternal_14.38;Parent=hg002_chrY_paternal_14;transcript_biotype=protein_coding;origin_ID=XM_047442717.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_14;gene_name=CSF2RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_14.38;transcript_name=hg002_chrY_paternal_14.38
HG002_chrY	Liftoff	exon	1141219	1141458	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1144184	1144326	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1146917	1147040	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1147157	1147286	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1148733	1148905	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1153022	1153155	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1154121	1154150	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1160325	1160460	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1163758	1163854	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1165281	1165362	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182435	1182457	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1182546	1182820	.	+	.	Parent=hg002_chrY_paternal_14.38;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1144240	1144326	.	+	0	Parent=hg002_chrY_paternal_14.38;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1146917	1147040	.	+	0	Parent=hg002_chrY_paternal_14.38;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1147157	1147286	.	+	2	Parent=hg002_chrY_paternal_14.38;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1148733	1148905	.	+	1	Parent=hg002_chrY_paternal_14.38;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1153022	1153155	.	+	2	Parent=hg002_chrY_paternal_14.38;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1154121	1154150	.	+	0	Parent=hg002_chrY_paternal_14.38;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1160325	1160460	.	+	0	Parent=hg002_chrY_paternal_14.38;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1163758	1163854	.	+	2	Parent=hg002_chrY_paternal_14.38;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1165281	1165362	.	+	1	Parent=hg002_chrY_paternal_14.38;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182435	1182457	.	+	0	Parent=hg002_chrY_paternal_14.38;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1182546	1182684	.	+	1	Parent=hg002_chrY_paternal_14.38;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	gene	1151935	1152387	.	-	.	ID=hg002_chrY_paternal_15;gene_name=LOC124905238;gene_biotype=lncRNA;origin_ID=LOC124905238_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.15_0
HG002_chrY	Liftoff	transcript	1151935	1152387	.	-	.	ID=hg002_chrY_paternal_15.1;Parent=hg002_chrY_paternal_15;transcript_biotype=lnc_RNA;origin_ID=XR_007068468.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_15;gene_name=LOC124905238;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_15.1;transcript_name=hg002_chrY_paternal_15.1
HG002_chrY	Liftoff	exon	1151935	1151971	.	-	.	Parent=hg002_chrY_paternal_15.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1152232	1152274	.	-	.	Parent=hg002_chrY_paternal_15.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1152318	1152387	.	-	.	Parent=hg002_chrY_paternal_15.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1152004	1152078	.	+	.	ID=hg002_chrY_paternal_16;gene_name=MIR3690;gene_biotype=miRNA;origin_ID=MIR3690_1_3;coverage=1.0;sequence_ID=0.989;extra_copy_number=2;copy_num_ID=REF.chrY.16_2
HG002_chrY	Liftoff	transcript	1152004	1152078	.	+	.	ID=hg002_chrY_paternal_16.1;Parent=hg002_chrY_paternal_16;transcript_biotype=primary_transcript;origin_ID=NR_037461.1_1_3;extra_copy_number=2;gene_id=hg002_chrY_paternal_16;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_16.1;transcript_name=hg002_chrY_paternal_16.1
HG002_chrY	Liftoff	exon	1152004	1152078	.	+	.	Parent=hg002_chrY_paternal_16.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	transcript	1152013	1152035	.	+	.	ID=hg002_chrY_paternal_16.2;Parent=hg002_chrY_paternal_16;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3894_3;extra_copy_number=2;gene_id=hg002_chrY_paternal_16;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_16.2;transcript_name=hg002_chrY_paternal_16.2
HG002_chrY	Liftoff	exon	1152013	1152035	.	+	.	Parent=hg002_chrY_paternal_16.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	gene	1152307	1152381	.	+	.	ID=hg002_chrY_paternal_17;gene_name=MIR3690;gene_biotype=miRNA;origin_ID=MIR3690_1_3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.16_0
HG002_chrY	Liftoff	transcript	1152307	1152381	.	+	.	ID=hg002_chrY_paternal_17.1;Parent=hg002_chrY_paternal_17;transcript_biotype=primary_transcript;origin_ID=NR_037461.1_1_3;extra_copy_number=0;gene_id=hg002_chrY_paternal_17;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_17.1;transcript_name=hg002_chrY_paternal_17.1
HG002_chrY	Liftoff	exon	1152307	1152381	.	+	.	Parent=hg002_chrY_paternal_17.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1152316	1152338	.	+	.	ID=hg002_chrY_paternal_17.2;Parent=hg002_chrY_paternal_17;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3894_3;extra_copy_number=0;gene_id=hg002_chrY_paternal_17;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_17.2;transcript_name=hg002_chrY_paternal_17.2
HG002_chrY	Liftoff	exon	1152316	1152338	.	+	.	Parent=hg002_chrY_paternal_17.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1152610	1152684	.	+	.	ID=hg002_chrY_paternal_18;gene_name=MIR3690;gene_biotype=miRNA;origin_ID=MIR3690_1_3;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.16_1
HG002_chrY	Liftoff	transcript	1152610	1152684	.	+	.	ID=hg002_chrY_paternal_18.1;Parent=hg002_chrY_paternal_18;transcript_biotype=primary_transcript;origin_ID=NR_037461.1_1_3;extra_copy_number=1;gene_id=hg002_chrY_paternal_18;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_18.1;transcript_name=hg002_chrY_paternal_18.1
HG002_chrY	Liftoff	exon	1152610	1152684	.	+	.	Parent=hg002_chrY_paternal_18.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	transcript	1152619	1152641	.	+	.	ID=hg002_chrY_paternal_18.2;Parent=hg002_chrY_paternal_18;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3894_3;extra_copy_number=1;gene_id=hg002_chrY_paternal_18;gene_name=MIR3690;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_18.2;transcript_name=hg002_chrY_paternal_18.2
HG002_chrY	Liftoff	exon	1152619	1152641	.	+	.	Parent=hg002_chrY_paternal_18.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	1160090	1160209	.	-	.	ID=hg002_chrY_paternal_19;gene_name=RNA5SP498;gene_biotype=pseudogene;origin_ID=RNA5SP498_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.17_0
HG002_chrY	Liftoff	gene	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;origin_ID=IL3RA_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=7;extra_copy_number=0;copy_num_ID=REF.chrY.18_0
HG002_chrY	Liftoff	transcript	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20.1;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=NM_001267713.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.1;transcript_name=hg002_chrY_paternal_20.1
HG002_chrY	Liftoff	exon	1197497	1197638	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202437	1202538	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213046	1213230	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202475	1202538	.	+	0	Parent=hg002_chrY_paternal_20.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213046	1213230	.	+	1	Parent=hg002_chrY_paternal_20.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20.2;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=NM_002183.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.2;transcript_name=hg002_chrY_paternal_20.2
HG002_chrY	Liftoff	exon	1197497	1197638	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202437	1202538	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213046	1213230	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202475	1202538	.	+	0	Parent=hg002_chrY_paternal_20.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213046	1213230	.	+	1	Parent=hg002_chrY_paternal_20.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20.3;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=XM_005274780.6;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.3;transcript_name=hg002_chrY_paternal_20.3
HG002_chrY	Liftoff	exon	1197497	1197638	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202440	1202538	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213046	1213230	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202475	1202538	.	+	0	Parent=hg002_chrY_paternal_20.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213046	1213230	.	+	1	Parent=hg002_chrY_paternal_20.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20.4;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=XM_005274781.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.4;transcript_name=hg002_chrY_paternal_20.4
HG002_chrY	Liftoff	exon	1197497	1197638	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202437	1202538	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213049	1213230	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202475	1202538	.	+	0	Parent=hg002_chrY_paternal_20.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213049	1213230	.	+	1	Parent=hg002_chrY_paternal_20.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1197497	1242410	.	+	.	ID=hg002_chrY_paternal_20.5;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=XM_017030043.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.5;transcript_name=hg002_chrY_paternal_20.5
HG002_chrY	Liftoff	exon	1197497	1197638	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202440	1202538	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213049	1213230	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202475	1202538	.	+	0	Parent=hg002_chrY_paternal_20.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213049	1213230	.	+	1	Parent=hg002_chrY_paternal_20.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	gene	1197684	1238099	.	-	.	ID=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;origin_ID=LOC101928032_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.19_0
HG002_chrY	Liftoff	transcript	1197684	1238099	.	-	.	ID=hg002_chrY_paternal_21.1;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068475.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.1;transcript_name=hg002_chrY_paternal_21.1
HG002_chrY	Liftoff	exon	1197684	1198228	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1220159	.	-	.	ID=hg002_chrY_paternal_21.2;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756029.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.2;transcript_name=hg002_chrY_paternal_21.2
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219444	1220159	.	-	.	Parent=hg002_chrY_paternal_21.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1220159	.	-	.	ID=hg002_chrY_paternal_21.3;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756030.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.3;transcript_name=hg002_chrY_paternal_21.3
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219218	1220159	.	-	.	Parent=hg002_chrY_paternal_21.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.4;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756018.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.4;transcript_name=hg002_chrY_paternal_21.4
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228731	1228882	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.5;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756022.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.5;transcript_name=hg002_chrY_paternal_21.5
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228744	1228882	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.6;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756026.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.6;transcript_name=hg002_chrY_paternal_21.6
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228744	1228882	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.7;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756027.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.7;transcript_name=hg002_chrY_paternal_21.7
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228731	1228882	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.8;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756028.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.8;transcript_name=hg002_chrY_paternal_21.8
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.9;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068470.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.9;transcript_name=hg002_chrY_paternal_21.9
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1222321	1222465	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.10;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068471.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.10;transcript_name=hg002_chrY_paternal_21.10
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1222087	1222465	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.11;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068472.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.11;transcript_name=hg002_chrY_paternal_21.11
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213276	1213442	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1222087	1222465	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.12;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068473.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.12;transcript_name=hg002_chrY_paternal_21.12
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1222087	1222465	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228731	1228882	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.13;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068474.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.13;transcript_name=hg002_chrY_paternal_21.13
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1198286	1238099	.	-	.	ID=hg002_chrY_paternal_21.14;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756017.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.14;transcript_name=hg002_chrY_paternal_21.14
HG002_chrY	Liftoff	exon	1198286	1199501	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1202307	1202522	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1202291	1242410	.	+	.	ID=hg002_chrY_paternal_20.6;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=XM_047442730.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.6;transcript_name=hg002_chrY_paternal_20.6
HG002_chrY	Liftoff	exon	1202291	1202538	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213046	1213230	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202295	1202538	.	+	0	Parent=hg002_chrY_paternal_20.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213046	1213230	.	+	1	Parent=hg002_chrY_paternal_20.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1202291	1242410	.	+	.	ID=hg002_chrY_paternal_20.7;Parent=hg002_chrY_paternal_20;transcript_biotype=protein_coding;origin_ID=XM_047442731.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_20;gene_name=IL3RA;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_20.7;transcript_name=hg002_chrY_paternal_20.7
HG002_chrY	Liftoff	exon	1202291	1202538	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1206029	1206147	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1209147	1209261	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1212824	1212956	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213049	1213230	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216905	1217020	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1219545	1219571	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225865	1225979	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1238282	1238387	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1240665	1240746	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1242111	1242410	.	+	.	Parent=hg002_chrY_paternal_20.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1202295	1202538	.	+	0	Parent=hg002_chrY_paternal_20.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1206029	1206147	.	+	2	Parent=hg002_chrY_paternal_20.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1209147	1209261	.	+	0	Parent=hg002_chrY_paternal_20.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1212824	1212956	.	+	2	Parent=hg002_chrY_paternal_20.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1213049	1213230	.	+	1	Parent=hg002_chrY_paternal_20.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1216905	1217020	.	+	2	Parent=hg002_chrY_paternal_20.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1219545	1219571	.	+	0	Parent=hg002_chrY_paternal_20.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1225865	1225979	.	+	0	Parent=hg002_chrY_paternal_20.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1238282	1238387	.	+	2	Parent=hg002_chrY_paternal_20.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1240665	1240746	.	+	1	Parent=hg002_chrY_paternal_20.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1242111	1242185	.	+	0	Parent=hg002_chrY_paternal_20.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1210746	1238099	.	-	.	ID=hg002_chrY_paternal_21.15;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756023.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.15;transcript_name=hg002_chrY_paternal_21.15
HG002_chrY	Liftoff	exon	1210746	1211303	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1211490	1238099	.	-	.	ID=hg002_chrY_paternal_21.16;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756019.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.16;transcript_name=hg002_chrY_paternal_21.16
HG002_chrY	Liftoff	exon	1211490	1211576	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213276	1213442	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1211490	1238099	.	-	.	ID=hg002_chrY_paternal_21.17;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_007068476.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.17;transcript_name=hg002_chrY_paternal_21.17
HG002_chrY	Liftoff	exon	1211490	1211922	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1222087	1222465	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1211883	1238099	.	-	.	ID=hg002_chrY_paternal_21.18;Parent=hg002_chrY_paternal_21;transcript_biotype=lnc_RNA;origin_ID=XR_001756020.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_21;gene_name=LOC101928032;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_21.18;transcript_name=hg002_chrY_paternal_21.18
HG002_chrY	Liftoff	exon	1211883	1211922	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213034	1213195	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1213344	1213442	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1216256	1216824	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1225830	1225898	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1228748	1228882	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1237945	1238099	.	-	.	Parent=hg002_chrY_paternal_21.18;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1245867	1251947	.	-	.	ID=hg002_chrY_paternal_22;gene_name=SLC25A6;gene_biotype=protein_coding;origin_ID=SLC25A6_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.20_0
HG002_chrY	Liftoff	transcript	1245867	1251947	.	-	.	ID=hg002_chrY_paternal_22.1;Parent=hg002_chrY_paternal_22;transcript_biotype=protein_coding;origin_ID=NM_001636.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_22;gene_name=SLC25A6;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_22.1;transcript_name=hg002_chrY_paternal_22.1
HG002_chrY	Liftoff	exon	1245867	1246474	.	-	.	Parent=hg002_chrY_paternal_22.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1246994	1247134	.	-	.	Parent=hg002_chrY_paternal_22.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1248956	1249442	.	-	.	Parent=hg002_chrY_paternal_22.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1251733	1251947	.	-	.	Parent=hg002_chrY_paternal_22.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1246317	1246474	.	-	2	Parent=hg002_chrY_paternal_22.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1246994	1247134	.	-	2	Parent=hg002_chrY_paternal_22.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1248956	1249442	.	-	0	Parent=hg002_chrY_paternal_22.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1251733	1251843	.	-	0	Parent=hg002_chrY_paternal_22.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1251827	1256735	.	+	.	ID=hg002_chrY_paternal_23;gene_name=LOC105373102;gene_biotype=protein_coding;origin_ID=LOC105373102;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.21_0
HG002_chrY	Liftoff	transcript	1251827	1256735	.	+	.	ID=hg002_chrY_paternal_23.1;Parent=hg002_chrY_paternal_23;transcript_biotype=protein_coding;origin_ID=XM_047442787.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_23;gene_name=LOC105373102;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_23.1;transcript_name=hg002_chrY_paternal_23.1
HG002_chrY	Liftoff	exon	1251827	1252175	.	+	.	Parent=hg002_chrY_paternal_23.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1254984	1255402	.	+	.	Parent=hg002_chrY_paternal_23.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1256226	1256735	.	+	.	Parent=hg002_chrY_paternal_23.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1251827	1252175	.	+	0	Parent=hg002_chrY_paternal_23.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1254984	1255402	.	+	2	Parent=hg002_chrY_paternal_23.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1256226	1256246	.	+	0	Parent=hg002_chrY_paternal_23.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1251827	1256735	.	+	.	ID=hg002_chrY_paternal_23.2;Parent=hg002_chrY_paternal_23;transcript_biotype=transcript;origin_ID=XR_007068469.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_23;gene_name=LOC105373102;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_23.2;transcript_name=hg002_chrY_paternal_23.2
HG002_chrY	Liftoff	exon	1251827	1252175	.	+	.	Parent=hg002_chrY_paternal_23.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1254984	1255402	.	+	.	Parent=hg002_chrY_paternal_23.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1256226	1256369	.	+	.	Parent=hg002_chrY_paternal_23.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1256464	1256735	.	+	.	Parent=hg002_chrY_paternal_23.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	1256879	1259266	.	+	.	ID=hg002_chrY_paternal_24;gene_name=LINC00106;gene_biotype=lncRNA;origin_ID=LINC00106_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.22_0
HG002_chrY	Liftoff	transcript	1256879	1259266	.	+	.	ID=hg002_chrY_paternal_24.1;Parent=hg002_chrY_paternal_24;transcript_biotype=lnc_RNA;origin_ID=NR_130733.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_24;gene_name=LINC00106;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_24.1;transcript_name=hg002_chrY_paternal_24.1
HG002_chrY	Liftoff	exon	1256879	1257078	.	+	.	Parent=hg002_chrY_paternal_24.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1258679	1258812	.	+	.	Parent=hg002_chrY_paternal_24.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1259221	1259266	.	+	.	Parent=hg002_chrY_paternal_24.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	1260385	1273768	.	+	.	ID=hg002_chrY_paternal_25;gene_name=ASMTL-AS1;gene_biotype=lncRNA;origin_ID=ASMTL-AS1_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.23_0
HG002_chrY	Liftoff	transcript	1260385	1271911	.	+	.	ID=hg002_chrY_paternal_25.1;Parent=hg002_chrY_paternal_25;transcript_biotype=lnc_RNA;origin_ID=NR_026710.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_25;gene_name=ASMTL-AS1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_25.1;transcript_name=hg002_chrY_paternal_25.1
HG002_chrY	Liftoff	exon	1260385	1260440	.	+	.	Parent=hg002_chrY_paternal_25.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1261316	1262079	.	+	.	Parent=hg002_chrY_paternal_25.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1263232	1263356	.	+	.	Parent=hg002_chrY_paternal_25.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271068	1271911	.	+	.	Parent=hg002_chrY_paternal_25.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1260385	1273768	.	+	.	ID=hg002_chrY_paternal_25.2;Parent=hg002_chrY_paternal_25;transcript_biotype=lnc_RNA;origin_ID=NR_026711.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_25;gene_name=ASMTL-AS1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_25.2;transcript_name=hg002_chrY_paternal_25.2
HG002_chrY	Liftoff	exon	1260385	1260440	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1261316	1262079	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1263232	1263356	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271068	1271213	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1272087	1272635	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1273068	1273768	.	+	.	Parent=hg002_chrY_paternal_25.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	1262910	1312680	.	-	.	ID=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;origin_ID=ASMTL_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=8;extra_copy_number=0;copy_num_ID=REF.chrY.24_0
HG002_chrY	Liftoff	transcript	1262910	1295371	.	-	.	ID=hg002_chrY_paternal_26.1;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=XM_011545638.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.1;transcript_name=hg002_chrY_paternal_26.1
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1295214	1295371	.	-	.	Parent=hg002_chrY_paternal_26.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294916	.	-	0	Parent=hg002_chrY_paternal_26.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1295214	1295237	.	-	0	Parent=hg002_chrY_paternal_26.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1298713	.	-	.	ID=hg002_chrY_paternal_26.2;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=XM_017030084.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.2;transcript_name=hg002_chrY_paternal_26.2
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298552	1298713	.	-	.	Parent=hg002_chrY_paternal_26.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294862	.	-	0	Parent=hg002_chrY_paternal_26.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1311833	.	-	.	ID=hg002_chrY_paternal_26.3;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=NM_001173474.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.3;transcript_name=hg002_chrY_paternal_26.3
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1311672	1311833	.	-	.	Parent=hg002_chrY_paternal_26.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294916	.	-	0	Parent=hg002_chrY_paternal_26.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301474	.	-	0	Parent=hg002_chrY_paternal_26.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1311672	1311764	.	-	0	Parent=hg002_chrY_paternal_26.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1311833	.	-	.	ID=hg002_chrY_paternal_26.4;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=NM_004192.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.4;transcript_name=hg002_chrY_paternal_26.4
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1311672	1311833	.	-	.	Parent=hg002_chrY_paternal_26.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294916	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1298254	1298301	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301474	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1311672	1311764	.	-	0	Parent=hg002_chrY_paternal_26.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1311833	.	-	.	ID=hg002_chrY_paternal_26.5;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=XM_047442774.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.5;transcript_name=hg002_chrY_paternal_26.5
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1311672	1311833	.	-	.	Parent=hg002_chrY_paternal_26.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1298254	1298301	.	-	1	Parent=hg002_chrY_paternal_26.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301404	.	-	0	Parent=hg002_chrY_paternal_26.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1312680	.	-	.	ID=hg002_chrY_paternal_26.6;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=NM_001173473.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.6;transcript_name=hg002_chrY_paternal_26.6
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1312542	1312680	.	-	.	Parent=hg002_chrY_paternal_26.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294916	.	-	0	Parent=hg002_chrY_paternal_26.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1298254	1298301	.	-	0	Parent=hg002_chrY_paternal_26.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301393	.	-	0	Parent=hg002_chrY_paternal_26.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1312680	.	-	.	ID=hg002_chrY_paternal_26.7;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=XM_005274783.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.7;transcript_name=hg002_chrY_paternal_26.7
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294852	1294916	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1311672	1311830	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1312542	1312680	.	-	.	Parent=hg002_chrY_paternal_26.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294852	1294916	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1298254	1298301	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301474	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1311672	1311764	.	-	0	Parent=hg002_chrY_paternal_26.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1262910	1312680	.	-	.	ID=hg002_chrY_paternal_26.8;Parent=hg002_chrY_paternal_26;transcript_biotype=protein_coding;origin_ID=XM_047442773.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_26;gene_name=ASMTL;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_26.8;transcript_name=hg002_chrY_paternal_26.8
HG002_chrY	Liftoff	exon	1262910	1263260	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	1271057	1271179	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	1276311	1276454	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	1277320	1277452	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1280009	1280193	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1283876	1284038	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1286085	1286472	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1290619	1290727	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1294181	1294242	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1298254	1298301	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1301343	1301474	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1312542	1312680	.	-	.	Parent=hg002_chrY_paternal_26.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1263040	1263260	.	-	2	Parent=hg002_chrY_paternal_26.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1271057	1271179	.	-	2	Parent=hg002_chrY_paternal_26.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1276311	1276454	.	-	2	Parent=hg002_chrY_paternal_26.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1277320	1277452	.	-	0	Parent=hg002_chrY_paternal_26.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1280009	1280193	.	-	2	Parent=hg002_chrY_paternal_26.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1283876	1284038	.	-	0	Parent=hg002_chrY_paternal_26.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1286085	1286472	.	-	1	Parent=hg002_chrY_paternal_26.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1290619	1290727	.	-	2	Parent=hg002_chrY_paternal_26.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1294181	1294242	.	-	1	Parent=hg002_chrY_paternal_26.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1298254	1298301	.	-	1	Parent=hg002_chrY_paternal_26.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1301343	1301404	.	-	0	Parent=hg002_chrY_paternal_26.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	1321896	1397458	.	-	.	ID=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;origin_ID=P2RY8_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=5;extra_copy_number=0;copy_num_ID=REF.chrY.25_0
HG002_chrY	Liftoff	transcript	1321896	1327035	.	-	.	ID=hg002_chrY_paternal_27.1;Parent=hg002_chrY_paternal_27;transcript_biotype=protein_coding;origin_ID=XM_005274778.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_27.1;transcript_name=hg002_chrY_paternal_27.1
HG002_chrY	Liftoff	exon	1321896	1325895	.	-	.	Parent=hg002_chrY_paternal_27.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1326344	1327035	.	-	.	Parent=hg002_chrY_paternal_27.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1324792	1325871	.	-	0	Parent=hg002_chrY_paternal_27.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1321896	1353074	.	-	.	ID=hg002_chrY_paternal_27.2;Parent=hg002_chrY_paternal_27;transcript_biotype=protein_coding;origin_ID=XM_047442729.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_27.2;transcript_name=hg002_chrY_paternal_27.2
HG002_chrY	Liftoff	exon	1321896	1325895	.	-	.	Parent=hg002_chrY_paternal_27.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1353020	1353074	.	-	.	Parent=hg002_chrY_paternal_27.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1324792	1325871	.	-	0	Parent=hg002_chrY_paternal_27.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1321896	1354699	.	-	.	ID=hg002_chrY_paternal_27.3;Parent=hg002_chrY_paternal_27;transcript_biotype=protein_coding;origin_ID=XM_011545632.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_27.3;transcript_name=hg002_chrY_paternal_27.3
HG002_chrY	Liftoff	exon	1321896	1325895	.	-	.	Parent=hg002_chrY_paternal_27.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1354083	1354699	.	-	.	Parent=hg002_chrY_paternal_27.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1324792	1325871	.	-	0	Parent=hg002_chrY_paternal_27.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1321896	1397458	.	-	.	ID=hg002_chrY_paternal_27.4;Parent=hg002_chrY_paternal_27;transcript_biotype=protein_coding;origin_ID=NM_178129.5_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_27.4;transcript_name=hg002_chrY_paternal_27.4
HG002_chrY	Liftoff	exon	1321896	1325895	.	-	.	Parent=hg002_chrY_paternal_27.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1397194	1397458	.	-	.	Parent=hg002_chrY_paternal_27.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1324792	1325871	.	-	0	Parent=hg002_chrY_paternal_27.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1321896	1397458	.	-	.	ID=hg002_chrY_paternal_27.5;Parent=hg002_chrY_paternal_27;transcript_biotype=protein_coding;origin_ID=XM_006724864.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_27;gene_name=P2RY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_27.5;transcript_name=hg002_chrY_paternal_27.5
HG002_chrY	Liftoff	exon	1321896	1325895	.	-	.	Parent=hg002_chrY_paternal_27.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1327815	1327983	.	-	.	Parent=hg002_chrY_paternal_27.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1397194	1397458	.	-	.	Parent=hg002_chrY_paternal_27.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1324792	1325871	.	-	0	Parent=hg002_chrY_paternal_27.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	1451940	1462597	.	+	.	ID=hg002_chrY_paternal_28;gene_name=AKAP17A;gene_biotype=protein_coding;origin_ID=AKAP17A_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.26_0
HG002_chrY	Liftoff	transcript	1451940	1462597	.	+	.	ID=hg002_chrY_paternal_28.1;Parent=hg002_chrY_paternal_28;transcript_biotype=protein_coding;origin_ID=NM_005088.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_28;gene_name=AKAP17A;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_28.1;transcript_name=hg002_chrY_paternal_28.1
HG002_chrY	Liftoff	exon	1451940	1452105	.	+	.	Parent=hg002_chrY_paternal_28.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1453780	1454560	.	+	.	Parent=hg002_chrY_paternal_28.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1455713	1455861	.	+	.	Parent=hg002_chrY_paternal_28.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1459269	1459509	.	+	.	Parent=hg002_chrY_paternal_28.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1460736	1462597	.	+	.	Parent=hg002_chrY_paternal_28.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1453799	1454560	.	+	0	Parent=hg002_chrY_paternal_28.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1455713	1455861	.	+	0	Parent=hg002_chrY_paternal_28.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1459269	1459509	.	+	1	Parent=hg002_chrY_paternal_28.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1460736	1461671	.	+	0	Parent=hg002_chrY_paternal_28.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1451940	1462597	.	+	.	ID=hg002_chrY_paternal_28.2;Parent=hg002_chrY_paternal_28;transcript_biotype=transcript;origin_ID=NR_027383.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_28;gene_name=AKAP17A;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_28.2;transcript_name=hg002_chrY_paternal_28.2
HG002_chrY	Liftoff	exon	1451940	1452105	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1453780	1454560	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1455713	1455861	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1459269	1459509	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1460215	1460284	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1460736	1462597	.	+	.	Parent=hg002_chrY_paternal_28.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	1455784	1498825	.	+	.	ID=hg002_chrY_paternal_29;gene_name=ASMT;gene_biotype=protein_coding;origin_ID=ASMT_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.27_0
HG002_chrY	Liftoff	transcript	1455784	1498825	.	+	.	ID=hg002_chrY_paternal_29.1;Parent=hg002_chrY_paternal_29;transcript_biotype=protein_coding;origin_ID=NM_004043.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_29;gene_name=ASMT;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_29.1;transcript_name=hg002_chrY_paternal_29.1
HG002_chrY	Liftoff	exon	1455784	1455861	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1474840	1474975	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1482846	1483020	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1483976	1484105	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1487396	1487464	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1489515	1489633	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1492398	1492481	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1492844	1492984	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1496133	1496255	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	1498547	1498825	.	+	.	Parent=hg002_chrY_paternal_29.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1474907	1474975	.	+	0	Parent=hg002_chrY_paternal_29.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1482846	1483020	.	+	0	Parent=hg002_chrY_paternal_29.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1483976	1484105	.	+	2	Parent=hg002_chrY_paternal_29.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1487396	1487464	.	+	1	Parent=hg002_chrY_paternal_29.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1489515	1489633	.	+	1	Parent=hg002_chrY_paternal_29.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1492398	1492481	.	+	2	Parent=hg002_chrY_paternal_29.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1492844	1492984	.	+	2	Parent=hg002_chrY_paternal_29.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1496133	1496255	.	+	2	Parent=hg002_chrY_paternal_29.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1498547	1498758	.	+	2	Parent=hg002_chrY_paternal_29.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1474766	1498825	.	+	.	ID=hg002_chrY_paternal_29.2;Parent=hg002_chrY_paternal_29;transcript_biotype=protein_coding;origin_ID=NM_001171038.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_29;gene_name=ASMT;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_29.2;transcript_name=hg002_chrY_paternal_29.2
HG002_chrY	Liftoff	exon	1474766	1474975	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1482846	1483020	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1483976	1484105	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1487396	1487464	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1489515	1489633	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1492398	1492481	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1492844	1492984	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1496133	1496255	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	1498547	1498825	.	+	.	Parent=hg002_chrY_paternal_29.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1474907	1474975	.	+	0	Parent=hg002_chrY_paternal_29.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1482846	1483020	.	+	0	Parent=hg002_chrY_paternal_29.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1483976	1484105	.	+	2	Parent=hg002_chrY_paternal_29.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1487396	1487464	.	+	1	Parent=hg002_chrY_paternal_29.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1489515	1489633	.	+	1	Parent=hg002_chrY_paternal_29.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1492398	1492481	.	+	2	Parent=hg002_chrY_paternal_29.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1492844	1492984	.	+	2	Parent=hg002_chrY_paternal_29.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1496133	1496255	.	+	2	Parent=hg002_chrY_paternal_29.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1498547	1498758	.	+	2	Parent=hg002_chrY_paternal_29.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1474840	1498825	.	+	.	ID=hg002_chrY_paternal_29.3;Parent=hg002_chrY_paternal_29;transcript_biotype=protein_coding;origin_ID=NM_001171039.1_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_29;gene_name=ASMT;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_29.3;transcript_name=hg002_chrY_paternal_29.3
HG002_chrY	Liftoff	exon	1474840	1474975	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1482846	1483020	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1483976	1484105	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1487396	1487464	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1489515	1489633	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1496133	1496255	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1498547	1498825	.	+	.	Parent=hg002_chrY_paternal_29.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1474907	1474975	.	+	0	Parent=hg002_chrY_paternal_29.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1482846	1483020	.	+	0	Parent=hg002_chrY_paternal_29.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1483976	1484105	.	+	2	Parent=hg002_chrY_paternal_29.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1487396	1487464	.	+	1	Parent=hg002_chrY_paternal_29.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1489515	1489633	.	+	1	Parent=hg002_chrY_paternal_29.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1496133	1496255	.	+	2	Parent=hg002_chrY_paternal_29.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1498547	1498758	.	+	2	Parent=hg002_chrY_paternal_29.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	1588079	1612002	.	+	.	ID=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;origin_ID=LINC02968_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.28_0
HG002_chrY	Liftoff	transcript	1588079	1612002	.	+	.	ID=hg002_chrY_paternal_30.1;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_001756035.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.1;transcript_name=hg002_chrY_paternal_30.1
HG002_chrY	Liftoff	exon	1588079	1588383	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589614	1589857	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599499	1599712	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1588133	1612002	.	+	.	ID=hg002_chrY_paternal_30.2;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_007068480.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.2;transcript_name=hg002_chrY_paternal_30.2
HG002_chrY	Liftoff	exon	1588133	1588383	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589611	1589872	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1597949	1598044	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599302	1599712	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1588216	1612002	.	+	.	ID=hg002_chrY_paternal_30.3;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_007068477.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.3;transcript_name=hg002_chrY_paternal_30.3
HG002_chrY	Liftoff	exon	1588216	1588383	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589611	1589857	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1597949	1598044	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599499	1599712	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1588216	1612002	.	+	.	ID=hg002_chrY_paternal_30.4;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_007068478.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.4;transcript_name=hg002_chrY_paternal_30.4
HG002_chrY	Liftoff	exon	1588216	1588383	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589611	1589857	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1597949	1598044	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599496	1599712	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1588216	1612002	.	+	.	ID=hg002_chrY_paternal_30.5;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_007068479.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.5;transcript_name=hg002_chrY_paternal_30.5
HG002_chrY	Liftoff	exon	1588216	1588383	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589614	1589857	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1597949	1598044	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599499	1599712	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1588216	1612002	.	+	.	ID=hg002_chrY_paternal_30.6;Parent=hg002_chrY_paternal_30;transcript_biotype=lnc_RNA;origin_ID=XR_950580.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_30;gene_name=LINC02968;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_30.6;transcript_name=hg002_chrY_paternal_30.6
HG002_chrY	Liftoff	exon	1588216	1588383	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1589611	1589857	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1597949	1598044	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599607	1599712	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1599806	1600590	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1603308	1603559	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1607303	1607362	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1611702	1612002	.	+	.	Parent=hg002_chrY_paternal_30.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	gene	1626199	1639491	.	+	.	ID=hg002_chrY_paternal_31;gene_name=LOC105379413;gene_biotype=lncRNA;origin_ID=LOC105379413_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.29_0
HG002_chrY	Liftoff	transcript	1626199	1639491	.	+	.	ID=hg002_chrY_paternal_31.1;Parent=hg002_chrY_paternal_31;transcript_biotype=lnc_RNA;origin_ID=XR_001756042.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_31;gene_name=LOC105379413;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_31.1;transcript_name=hg002_chrY_paternal_31.1
HG002_chrY	Liftoff	exon	1626199	1626775	.	+	.	Parent=hg002_chrY_paternal_31.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1631219	1631432	.	+	.	Parent=hg002_chrY_paternal_31.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1636362	1639491	.	+	.	Parent=hg002_chrY_paternal_31.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	1626199	1639491	.	+	.	ID=hg002_chrY_paternal_31.2;Parent=hg002_chrY_paternal_31;transcript_biotype=lnc_RNA;origin_ID=XR_001756045.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_31;gene_name=LOC105379413;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_31.2;transcript_name=hg002_chrY_paternal_31.2
HG002_chrY	Liftoff	exon	1626199	1626775	.	+	.	Parent=hg002_chrY_paternal_31.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	1631219	1631381	.	+	.	Parent=hg002_chrY_paternal_31.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1636362	1639491	.	+	.	Parent=hg002_chrY_paternal_31.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	1734398	1740697	.	-	.	ID=hg002_chrY_paternal_32;gene_name=LOC107985677;gene_biotype=lncRNA;origin_ID=LOC107985677_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.30_0
HG002_chrY	Liftoff	transcript	1734398	1740697	.	-	.	ID=hg002_chrY_paternal_32.1;Parent=hg002_chrY_paternal_32;transcript_biotype=lnc_RNA;origin_ID=XR_007068481.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_32;gene_name=LOC107985677;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_32.1;transcript_name=hg002_chrY_paternal_32.1
HG002_chrY	Liftoff	exon	1734398	1735451	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1736606	1736719	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1737209	1737335	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	1738667	1738982	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	1739383	1739982	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	1740359	1740697	.	-	.	Parent=hg002_chrY_paternal_32.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1890055	2173607	.	-	.	ID=hg002_chrY_paternal_33;gene_name=DHRSX;gene_biotype=protein_coding;origin_ID=DHRSX_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.31_0
HG002_chrY	Liftoff	transcript	1890055	2173607	.	-	.	ID=hg002_chrY_paternal_33.1;Parent=hg002_chrY_paternal_33;transcript_biotype=protein_coding;origin_ID=NM_145177.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_33;gene_name=DHRSX;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_33.1;transcript_name=hg002_chrY_paternal_33.1
HG002_chrY	Liftoff	exon	1890055	1891778	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	1914331	1914538	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	1938063	1938270	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	1958713	1958814	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2081347	2081415	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2097800	2097907	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2173448	2173607	.	-	.	Parent=hg002_chrY_paternal_33.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1891590	1891778	.	-	0	Parent=hg002_chrY_paternal_33.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1914331	1914538	.	-	1	Parent=hg002_chrY_paternal_33.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1938063	1938270	.	-	2	Parent=hg002_chrY_paternal_33.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	1958713	1958814	.	-	2	Parent=hg002_chrY_paternal_33.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2081347	2081415	.	-	2	Parent=hg002_chrY_paternal_33.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2097800	2097907	.	-	2	Parent=hg002_chrY_paternal_33.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2173448	2173556	.	-	0	Parent=hg002_chrY_paternal_33.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	1993158	2010214	.	+	.	ID=hg002_chrY_paternal_34;gene_name=LOC124905239;gene_biotype=lncRNA;origin_ID=LOC124905239_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.32_0
HG002_chrY	Liftoff	transcript	1993158	2010214	.	+	.	ID=hg002_chrY_paternal_34.1;Parent=hg002_chrY_paternal_34;transcript_biotype=lnc_RNA;origin_ID=XR_007068482.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_34;gene_name=LOC124905239;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_34.1;transcript_name=hg002_chrY_paternal_34.1
HG002_chrY	Liftoff	exon	1993158	1994435	.	+	.	Parent=hg002_chrY_paternal_34.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2001937	2002063	.	+	.	Parent=hg002_chrY_paternal_34.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2010048	2010214	.	+	.	Parent=hg002_chrY_paternal_34.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	2159063	2173607	.	-	.	ID=hg002_chrY_paternal_35;gene_name=ZBED1;gene_biotype=protein_coding;origin_ID=ZBED1_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.33_0
HG002_chrY	Liftoff	transcript	2159063	2173256	.	-	.	ID=hg002_chrY_paternal_35.1;Parent=hg002_chrY_paternal_35;transcript_biotype=protein_coding;origin_ID=NM_001171135.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_35;gene_name=ZBED1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_35.1;transcript_name=hg002_chrY_paternal_35.1
HG002_chrY	Liftoff	exon	2159063	2163400	.	-	.	Parent=hg002_chrY_paternal_35.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2172942	2173256	.	-	.	Parent=hg002_chrY_paternal_35.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2161263	2163347	.	-	0	Parent=hg002_chrY_paternal_35.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2159063	2173607	.	-	.	ID=hg002_chrY_paternal_35.2;Parent=hg002_chrY_paternal_35;transcript_biotype=protein_coding;origin_ID=NM_001171136.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_35;gene_name=ZBED1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_35.2;transcript_name=hg002_chrY_paternal_35.2
HG002_chrY	Liftoff	exon	2159063	2163400	.	-	.	Parent=hg002_chrY_paternal_35.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2173448	2173607	.	-	.	Parent=hg002_chrY_paternal_35.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2161263	2163347	.	-	0	Parent=hg002_chrY_paternal_35.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2159063	2173607	.	-	.	ID=hg002_chrY_paternal_35.3;Parent=hg002_chrY_paternal_35;transcript_biotype=protein_coding;origin_ID=NM_004729.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_35;gene_name=ZBED1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_35.3;transcript_name=hg002_chrY_paternal_35.3
HG002_chrY	Liftoff	exon	2159063	2163397	.	-	.	Parent=hg002_chrY_paternal_35.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2173448	2173607	.	-	.	Parent=hg002_chrY_paternal_35.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2161263	2163347	.	-	0	Parent=hg002_chrY_paternal_35.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	2238469	2282025	.	-	.	ID=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;origin_ID=LOC101928092_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.34_0
HG002_chrY	Liftoff	transcript	2238469	2247035	.	-	.	ID=hg002_chrY_paternal_36.1;Parent=hg002_chrY_paternal_36;transcript_biotype=lnc_RNA;origin_ID=XR_001756048.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_36.1;transcript_name=hg002_chrY_paternal_36.1
HG002_chrY	Liftoff	exon	2238469	2239732	.	-	.	Parent=hg002_chrY_paternal_36.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2242450	2242605	.	-	.	Parent=hg002_chrY_paternal_36.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2246498	2247035	.	-	.	Parent=hg002_chrY_paternal_36.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2238469	2247035	.	-	.	ID=hg002_chrY_paternal_36.2;Parent=hg002_chrY_paternal_36;transcript_biotype=lnc_RNA;origin_ID=XR_950583.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_36.2;transcript_name=hg002_chrY_paternal_36.2
HG002_chrY	Liftoff	exon	2238469	2239732	.	-	.	Parent=hg002_chrY_paternal_36.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2242450	2242605	.	-	.	Parent=hg002_chrY_paternal_36.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2246515	2247035	.	-	.	Parent=hg002_chrY_paternal_36.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2238469	2281957	.	-	.	ID=hg002_chrY_paternal_36.3;Parent=hg002_chrY_paternal_36;transcript_biotype=lnc_RNA;origin_ID=XR_001756050.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_36.3;transcript_name=hg002_chrY_paternal_36.3
HG002_chrY	Liftoff	exon	2238469	2239732	.	-	.	Parent=hg002_chrY_paternal_36.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2242450	2242605	.	-	.	Parent=hg002_chrY_paternal_36.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2281891	2281957	.	-	.	Parent=hg002_chrY_paternal_36.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2238469	2281968	.	-	.	ID=hg002_chrY_paternal_36.4;Parent=hg002_chrY_paternal_36;transcript_biotype=lnc_RNA;origin_ID=XR_001756049.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_36.4;transcript_name=hg002_chrY_paternal_36.4
HG002_chrY	Liftoff	exon	2238469	2239732	.	-	.	Parent=hg002_chrY_paternal_36.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2242450	2242605	.	-	.	Parent=hg002_chrY_paternal_36.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2246498	2246691	.	-	.	Parent=hg002_chrY_paternal_36.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2281891	2281968	.	-	.	Parent=hg002_chrY_paternal_36.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2238469	2282025	.	-	.	ID=hg002_chrY_paternal_36.5;Parent=hg002_chrY_paternal_36;transcript_biotype=lnc_RNA;origin_ID=XR_001756051.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_36;gene_name=LOC101928092;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_36.5;transcript_name=hg002_chrY_paternal_36.5
HG002_chrY	Liftoff	exon	2238469	2239732	.	-	.	Parent=hg002_chrY_paternal_36.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2281891	2282025	.	-	.	Parent=hg002_chrY_paternal_36.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	2281976	2282039	.	+	.	ID=hg002_chrY_paternal_37;gene_name=MIR6089;gene_biotype=miRNA;origin_ID=MIR6089_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.35_0
HG002_chrY	Liftoff	transcript	2281976	2282039	.	+	.	ID=hg002_chrY_paternal_37.1;Parent=hg002_chrY_paternal_37;transcript_biotype=primary_transcript;origin_ID=NR_106737.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_37;gene_name=MIR6089;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_37.1;transcript_name=hg002_chrY_paternal_37.1
HG002_chrY	Liftoff	exon	2281976	2282039	.	+	.	Parent=hg002_chrY_paternal_37.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2282014	2282037	.	+	.	ID=hg002_chrY_paternal_37.2;Parent=hg002_chrY_paternal_37;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3895;extra_copy_number=0;gene_id=hg002_chrY_paternal_37;gene_name=MIR6089;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_37.2;transcript_name=hg002_chrY_paternal_37.2
HG002_chrY	Liftoff	exon	2282014	2282037	.	+	.	Parent=hg002_chrY_paternal_37.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	2282050	2330279	.	+	.	ID=hg002_chrY_paternal_38;gene_name=CD99P1;gene_biotype=transcribed_pseudogene;origin_ID=CD99P1_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.36_0
HG002_chrY	Liftoff	transcript	2282050	2311366	.	+	.	ID=hg002_chrY_paternal_38.1;Parent=hg002_chrY_paternal_38;transcript_biotype=transcript;origin_ID=NR_033381.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_38;gene_name=CD99P1;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_38.1;transcript_name=hg002_chrY_paternal_38.1
HG002_chrY	Liftoff	exon	2282050	2282254	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2283755	2283797	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2284901	2284969	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2288566	2288719	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2291489	2291533	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2292178	2292246	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2295441	2295485	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2296136	2296204	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2299353	2299398	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	2311011	2311366	.	+	.	Parent=hg002_chrY_paternal_38.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2282050	2330279	.	+	.	ID=hg002_chrY_paternal_38.2;Parent=hg002_chrY_paternal_38;transcript_biotype=transcript;origin_ID=NR_033380.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_38;gene_name=CD99P1;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_38.2;transcript_name=hg002_chrY_paternal_38.2
HG002_chrY	Liftoff	exon	2282050	2282254	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2283755	2283797	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2284901	2284969	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2288566	2288719	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2291489	2291533	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2292178	2292246	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2296136	2296204	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2299353	2299398	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2328077	2330279	.	+	.	Parent=hg002_chrY_paternal_38.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	2285742	2288097	.	-	.	ID=hg002_chrY_paternal_39;gene_name=LINC00102;gene_biotype=lncRNA;origin_ID=LINC00102_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.37_0
HG002_chrY	Liftoff	transcript	2285742	2288097	.	-	.	ID=hg002_chrY_paternal_39.1;Parent=hg002_chrY_paternal_39;transcript_biotype=lnc_RNA;origin_ID=NR_037842.1_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_39;gene_name=LINC00102;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_39.1;transcript_name=hg002_chrY_paternal_39.1
HG002_chrY	Liftoff	exon	2285742	2286447	.	-	.	Parent=hg002_chrY_paternal_39.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2287467	2288097	.	-	.	Parent=hg002_chrY_paternal_39.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;origin_ID=CD99_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=6;extra_copy_number=0;copy_num_ID=REF.chrY.38_0
HG002_chrY	Liftoff	transcript	2364134	2409275	.	+	.	ID=hg002_chrY_paternal_40.1;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_001321367.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.1;transcript_name=hg002_chrY_paternal_40.1
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2390454	2390501	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2406199	2409275	.	+	.	Parent=hg002_chrY_paternal_40.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2390454	2390501	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2396162	2396212	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2406199	2406206	.	+	2	Parent=hg002_chrY_paternal_40.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.2;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_001122898.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.2;transcript_name=hg002_chrY_paternal_40.2
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411039	2411095	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2396162	2396212	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2411039	2411095	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2413619	2413644	.	+	2	Parent=hg002_chrY_paternal_40.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.3;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_001321368.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.3;transcript_name=hg002_chrY_paternal_40.3
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2390454	2390501	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411042	2411095	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2390454	2390501	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2396162	2396212	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2411042	2411095	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2413619	2413644	.	+	2	Parent=hg002_chrY_paternal_40.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.4;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_001321369.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.4;transcript_name=hg002_chrY_paternal_40.4
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411042	2411095	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2396162	2396212	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2411042	2411095	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2413619	2413644	.	+	2	Parent=hg002_chrY_paternal_40.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.5;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_001321370.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.5;transcript_name=hg002_chrY_paternal_40.5
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2390454	2390501	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411039	2411095	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2390454	2390501	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2411039	2411095	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2413619	2413644	.	+	2	Parent=hg002_chrY_paternal_40.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.6;Parent=hg002_chrY_paternal_40;transcript_biotype=protein_coding;origin_ID=NM_002414.5_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.6;transcript_name=hg002_chrY_paternal_40.6
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2390454	2390501	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411039	2411095	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2364200	2364266	.	+	0	Parent=hg002_chrY_paternal_40.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2387267	2387299	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2390454	2390501	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2392508	2392552	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2393203	2393271	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2395475	2395522	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2396162	2396212	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2399108	2399221	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2411039	2411095	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2413619	2413644	.	+	2	Parent=hg002_chrY_paternal_40.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2364134	2414149	.	+	.	ID=hg002_chrY_paternal_40.7;Parent=hg002_chrY_paternal_40;transcript_biotype=transcript;origin_ID=NR_135623.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_40;gene_name=CD99;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_40.7;transcript_name=hg002_chrY_paternal_40.7
HG002_chrY	Liftoff	exon	2364134	2364266	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2387267	2387299	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2390454	2390501	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2392508	2392552	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2393203	2393271	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2395475	2395522	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2396162	2396212	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2399108	2399221	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	2406199	2406216	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	2411042	2411095	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	2413619	2414149	.	+	.	Parent=hg002_chrY_paternal_40.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	gene	2425177	2447718	.	+	.	ID=hg002_chrY_paternal_41;gene_name=XGY2;gene_biotype=transcribed_pseudogene;origin_ID=XGY2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.39_0
HG002_chrY	Liftoff	transcript	2425177	2447718	.	+	.	ID=hg002_chrY_paternal_41.1;Parent=hg002_chrY_paternal_41;transcript_biotype=transcript;origin_ID=NR_003254.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_41;gene_name=XGY2;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_41.1;transcript_name=hg002_chrY_paternal_41.1
HG002_chrY	Liftoff	exon	2425177	2425216	.	+	.	Parent=hg002_chrY_paternal_41.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2443416	2443457	.	+	.	Parent=hg002_chrY_paternal_41.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2447438	2447718	.	+	.	Parent=hg002_chrY_paternal_41.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	2457468	2457572	.	+	.	ID=hg002_chrY_paternal_42;gene_name=RNU6-1334P;gene_biotype=pseudogene;origin_ID=RNU6-1334P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.40_0
HG002_chrY	Liftoff	gene	2459574	2460401	.	-	.	ID=hg002_chrY_paternal_43;gene_name=SRY;gene_biotype=protein_coding;origin_ID=SRY;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.41_0
HG002_chrY	Liftoff	transcript	2459574	2460401	.	-	.	ID=hg002_chrY_paternal_43.1;Parent=hg002_chrY_paternal_43;transcript_biotype=protein_coding;origin_ID=NM_003140.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_43;gene_name=SRY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_43.1;transcript_name=hg002_chrY_paternal_43.1
HG002_chrY	Liftoff	exon	2459574	2460401	.	-	.	Parent=hg002_chrY_paternal_43.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2459708	2460322	.	-	0	Parent=hg002_chrY_paternal_43.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	2462525	2463158	.	+	.	ID=hg002_chrY_paternal_44;gene_name=RNASEH2CP1;gene_biotype=pseudogene;origin_ID=RNASEH2CP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.42_0
HG002_chrY	Liftoff	gene	2500692	2500928	.	+	.	ID=hg002_chrY_paternal_45;gene_name=TOMM22P2;gene_biotype=pseudogene;origin_ID=TOMM22P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.43_0
HG002_chrY	Liftoff	gene	2514312	2539979	.	+	.	ID=hg002_chrY_paternal_46;gene_name=RPS4Y1;gene_biotype=protein_coding;origin_ID=RPS4Y1;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.44_0
HG002_chrY	Liftoff	transcript	2514312	2539979	.	+	.	ID=hg002_chrY_paternal_46.1;Parent=hg002_chrY_paternal_46;transcript_biotype=protein_coding;origin_ID=NM_001008.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_46;gene_name=RPS4Y1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_46.1;transcript_name=hg002_chrY_paternal_46.1
HG002_chrY	Liftoff	exon	2514312	2514337	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2514875	2514952	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2516787	2516967	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2518356	2518453	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2527311	2527482	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2537799	2537956	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2539504	2539979	.	+	.	Parent=hg002_chrY_paternal_46.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2514335	2514337	.	+	0	Parent=hg002_chrY_paternal_46.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2514875	2514952	.	+	0	Parent=hg002_chrY_paternal_46.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2516787	2516967	.	+	0	Parent=hg002_chrY_paternal_46.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2518356	2518453	.	+	2	Parent=hg002_chrY_paternal_46.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2527311	2527482	.	+	0	Parent=hg002_chrY_paternal_46.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2537799	2537956	.	+	2	Parent=hg002_chrY_paternal_46.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2539504	2539605	.	+	0	Parent=hg002_chrY_paternal_46.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2514312	2539979	.	+	.	ID=hg002_chrY_paternal_46.2;Parent=hg002_chrY_paternal_46;transcript_biotype=protein_coding;origin_ID=XM_047442742.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_46;gene_name=RPS4Y1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_46.2;transcript_name=hg002_chrY_paternal_46.2
HG002_chrY	Liftoff	exon	2514312	2514683	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2514875	2514952	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2516787	2516967	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2518356	2518453	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2527311	2527482	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2537799	2537956	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2539504	2539979	.	+	.	Parent=hg002_chrY_paternal_46.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2514654	2514683	.	+	0	Parent=hg002_chrY_paternal_46.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2514875	2514952	.	+	0	Parent=hg002_chrY_paternal_46.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2516787	2516967	.	+	0	Parent=hg002_chrY_paternal_46.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2518356	2518453	.	+	2	Parent=hg002_chrY_paternal_46.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2527311	2527482	.	+	0	Parent=hg002_chrY_paternal_46.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2537799	2537956	.	+	2	Parent=hg002_chrY_paternal_46.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2539504	2539605	.	+	0	Parent=hg002_chrY_paternal_46.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	2554272	2556432	.	-	.	ID=hg002_chrY_paternal_47;gene_name=HSFY3P;gene_biotype=pseudogene;origin_ID=HSFY3P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.45_0
HG002_chrY	Liftoff	gene	2602469	2603432	.	-	.	ID=hg002_chrY_paternal_48;gene_name=NAP1L1P2;gene_biotype=pseudogene;origin_ID=NAP1L1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.46_0
HG002_chrY	Liftoff	gene	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;origin_ID=ZFY;coverage=1.0;sequence_ID=1.0;valid_ORFs=14;extra_copy_number=0;copy_num_ID=REF.chrY.47_0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.1;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001145275.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.1;transcript_name=hg002_chrY_paternal_49.1
HG002_chrY	Liftoff	exon	2608442	2608830	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634131	2634686	.	+	0	Parent=hg002_chrY_paternal_49.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.2;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369705.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.2;transcript_name=hg002_chrY_paternal_49.2
HG002_chrY	Liftoff	exon	2608442	2608696	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634131	2634686	.	+	0	Parent=hg002_chrY_paternal_49.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.3;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369706.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.3;transcript_name=hg002_chrY_paternal_49.3
HG002_chrY	Liftoff	exon	2608442	2608830	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.4;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369707.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.4;transcript_name=hg002_chrY_paternal_49.4
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.5;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369708.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.5;transcript_name=hg002_chrY_paternal_49.5
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634131	2634686	.	+	0	Parent=hg002_chrY_paternal_49.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.6;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369709.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.6;transcript_name=hg002_chrY_paternal_49.6
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.7;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369710.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.7;transcript_name=hg002_chrY_paternal_49.7
HG002_chrY	Liftoff	exon	2608442	2608830	.	+	.	Parent=hg002_chrY_paternal_49.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648200	2648284	.	+	0	Parent=hg002_chrY_paternal_49.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.8;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_003411.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.8;transcript_name=hg002_chrY_paternal_49.8
HG002_chrY	Liftoff	exon	2608442	2608830	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.9;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=XM_017030075.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.9;transcript_name=hg002_chrY_paternal_49.9
HG002_chrY	Liftoff	exon	2608442	2608696	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.10;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001145276.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.10;transcript_name=hg002_chrY_paternal_49.10
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.11;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369702.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.11;transcript_name=hg002_chrY_paternal_49.11
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.12;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369703.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.12;transcript_name=hg002_chrY_paternal_49.12
HG002_chrY	Liftoff	exon	2608442	2608830	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634131	2634686	.	+	0	Parent=hg002_chrY_paternal_49.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2608442	2655545	.	+	.	ID=hg002_chrY_paternal_49.13;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=NM_001369704.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.13;transcript_name=hg002_chrY_paternal_49.13
HG002_chrY	Liftoff	exon	2608442	2608507	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634131	2634686	.	+	0	Parent=hg002_chrY_paternal_49.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	2619224	2655545	.	+	.	ID=hg002_chrY_paternal_49.14;Parent=hg002_chrY_paternal_49;transcript_biotype=protein_coding;origin_ID=XM_047442758.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_49;gene_name=ZFY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_49.14;transcript_name=hg002_chrY_paternal_49.14
HG002_chrY	Liftoff	exon	2619224	2619321	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2626950	2627038	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2634114	2634686	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648135	2648284	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	2648551	2648694	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	2649710	2649862	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	2650979	2651119	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	2651849	2655545	.	+	.	Parent=hg002_chrY_paternal_49.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2626978	2627038	.	+	0	Parent=hg002_chrY_paternal_49.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2634114	2634686	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648135	2648284	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2648551	2648694	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2649710	2649862	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2650979	2651119	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	2651849	2653032	.	+	2	Parent=hg002_chrY_paternal_49.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	gene	2639859	2675665	.	-	.	ID=hg002_chrY_paternal_50;gene_name=ZFY-AS1;gene_biotype=lncRNA;origin_ID=ZFY-AS1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.48_0
HG002_chrY	Liftoff	transcript	2639859	2675665	.	-	.	ID=hg002_chrY_paternal_50.1;Parent=hg002_chrY_paternal_50;transcript_biotype=lnc_RNA;origin_ID=NR_144458.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_50;gene_name=ZFY-AS1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_50.1;transcript_name=hg002_chrY_paternal_50.1
HG002_chrY	Liftoff	exon	2639859	2639979	.	-	.	Parent=hg002_chrY_paternal_50.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2654877	2654966	.	-	.	Parent=hg002_chrY_paternal_50.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2675352	2675665	.	-	.	Parent=hg002_chrY_paternal_50.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	2667941	2668314	.	-	.	ID=hg002_chrY_paternal_51;gene_name=EEF1A1P41;gene_biotype=pseudogene;origin_ID=EEF1A1P41;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.49_0
HG002_chrY	Liftoff	gene	2676035	2775299	.	+	.	ID=hg002_chrY_paternal_52;gene_name=LINC00278;gene_biotype=lncRNA;origin_ID=LINC00278;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.50_0
HG002_chrY	Liftoff	transcript	2676035	2775299	.	+	.	ID=hg002_chrY_paternal_52.1;Parent=hg002_chrY_paternal_52;transcript_biotype=lnc_RNA;origin_ID=NR_046502.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_52;gene_name=LINC00278;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_52.1;transcript_name=hg002_chrY_paternal_52.1
HG002_chrY	Liftoff	exon	2676035	2676256	.	+	.	Parent=hg002_chrY_paternal_52.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	2752309	2752366	.	+	.	Parent=hg002_chrY_paternal_52.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	2770022	2770083	.	+	.	Parent=hg002_chrY_paternal_52.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	2775112	2775299	.	+	.	Parent=hg002_chrY_paternal_52.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	2966806	2967830	.	+	.	ID=hg002_chrY_paternal_53;gene_name=AGPAT5P1;gene_biotype=pseudogene;origin_ID=AGPAT5P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.51_0
HG002_chrY	Liftoff	gene	3222876	3223656	.	+	.	ID=hg002_chrY_paternal_54;gene_name=PRRC2CP1;gene_biotype=pseudogene;origin_ID=PRRC2CP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.52_0
HG002_chrY	Liftoff	gene	3252142	3253116	.	+	.	ID=hg002_chrY_paternal_55;gene_name=TGIF2LY;gene_biotype=protein_coding;origin_ID=TGIF2LY;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.53_0
HG002_chrY	Liftoff	transcript	3252142	3253116	.	+	.	ID=hg002_chrY_paternal_55.1;Parent=hg002_chrY_paternal_55;transcript_biotype=protein_coding;origin_ID=NM_139214.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_55;gene_name=TGIF2LY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_55.1;transcript_name=hg002_chrY_paternal_55.1
HG002_chrY	Liftoff	exon	3252142	3252202	.	+	.	Parent=hg002_chrY_paternal_55.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	3252299	3253116	.	+	.	Parent=hg002_chrY_paternal_55.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	3252320	3252877	.	+	0	Parent=hg002_chrY_paternal_55.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	3355666	3358221	.	+	.	ID=hg002_chrY_paternal_56;gene_name=USP12PY;gene_biotype=pseudogene;origin_ID=USP12PY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.54_0
HG002_chrY	Liftoff	gene	3451612	3452617	.	-	.	ID=hg002_chrY_paternal_57;gene_name=RNF19BPY;gene_biotype=pseudogene;origin_ID=RNF19BPY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.55_0
HG002_chrY	Liftoff	gene	3473710	3508625	.	+	.	ID=hg002_chrY_paternal_58;gene_name=LOC105377227;gene_biotype=lncRNA;origin_ID=LOC105377227;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.56_0
HG002_chrY	Liftoff	transcript	3473710	3484729	.	+	.	ID=hg002_chrY_paternal_58.1;Parent=hg002_chrY_paternal_58;transcript_biotype=lnc_RNA;origin_ID=XR_938641.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_58;gene_name=LOC105377227;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_58.1;transcript_name=hg002_chrY_paternal_58.1
HG002_chrY	Liftoff	exon	3473710	3477011	.	+	.	Parent=hg002_chrY_paternal_58.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	3477444	3477555	.	+	.	Parent=hg002_chrY_paternal_58.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	3482628	3484729	.	+	.	Parent=hg002_chrY_paternal_58.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	3473710	3506103	.	+	.	ID=hg002_chrY_paternal_58.2;Parent=hg002_chrY_paternal_58;transcript_biotype=lnc_RNA;origin_ID=XR_001756053.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_58;gene_name=LOC105377227;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_58.2;transcript_name=hg002_chrY_paternal_58.2
HG002_chrY	Liftoff	exon	3473710	3477011	.	+	.	Parent=hg002_chrY_paternal_58.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	3477444	3477555	.	+	.	Parent=hg002_chrY_paternal_58.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	3482628	3482802	.	+	.	Parent=hg002_chrY_paternal_58.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	3505474	3506103	.	+	.	Parent=hg002_chrY_paternal_58.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	3473710	3508625	.	+	.	ID=hg002_chrY_paternal_58.3;Parent=hg002_chrY_paternal_58;transcript_biotype=lnc_RNA;origin_ID=XR_001756054.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_58;gene_name=LOC105377227;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_58.3;transcript_name=hg002_chrY_paternal_58.3
HG002_chrY	Liftoff	exon	3473710	3477011	.	+	.	Parent=hg002_chrY_paternal_58.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	3477444	3477555	.	+	.	Parent=hg002_chrY_paternal_58.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	3508531	3508625	.	+	.	Parent=hg002_chrY_paternal_58.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	3524107	3526133	.	-	.	ID=hg002_chrY_paternal_59;gene_name=LOC100533723;gene_biotype=pseudogene;origin_ID=LOC100533723;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.57_0
HG002_chrY	Liftoff	gene	3537676	3539825	.	-	.	ID=hg002_chrY_paternal_60;gene_name=UBE2V1P3;gene_biotype=pseudogene;origin_ID=UBE2V1P3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.58_0
HG002_chrY	Liftoff	gene	3850340	3850445	.	-	.	ID=hg002_chrY_paternal_61;gene_name=RNU6-303P;gene_biotype=pseudogene;origin_ID=RNU6-303P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.59_0
HG002_chrY	Liftoff	gene	4281488	4281598	.	+	.	ID=hg002_chrY_paternal_62;gene_name=MIR9985;gene_biotype=miRNA;origin_ID=MIR9985;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.60_0
HG002_chrY	Liftoff	transcript	4281488	4281598	.	+	.	ID=hg002_chrY_paternal_62.1;Parent=hg002_chrY_paternal_62;transcript_biotype=primary_transcript;origin_ID=NR_162096.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_62;gene_name=MIR9985;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_62.1;transcript_name=hg002_chrY_paternal_62.1
HG002_chrY	Liftoff	exon	4281488	4281598	.	+	.	Parent=hg002_chrY_paternal_62.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4281508	4281526	.	+	.	ID=hg002_chrY_paternal_62.2;Parent=hg002_chrY_paternal_62;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3896;extra_copy_number=0;gene_id=hg002_chrY_paternal_62;gene_name=MIR9985;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_62.2;transcript_name=hg002_chrY_paternal_62.2
HG002_chrY	Liftoff	exon	4281508	4281526	.	+	.	Parent=hg002_chrY_paternal_62.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	4476384	4478309	.	-	.	ID=hg002_chrY_paternal_63;gene_name=SERBP1P2;gene_biotype=pseudogene;origin_ID=SERBP1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.61_0
HG002_chrY	Liftoff	gene	4675686	5418112	.	+	.	ID=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;origin_ID=PCDH11Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=8;extra_copy_number=0;copy_num_ID=REF.chrY.62_0
HG002_chrY	Liftoff	transcript	4675686	4781005	.	+	.	ID=hg002_chrY_paternal_64.1;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=NM_001278619.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.1;transcript_name=hg002_chrY_paternal_64.1
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4706301	4706469	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4707308	4707413	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	4708072	4708130	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	4779751	4781005	.	+	.	Parent=hg002_chrY_paternal_64.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4708099	4708130	.	+	0	Parent=hg002_chrY_paternal_64.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732291	4732861	.	+	1	Parent=hg002_chrY_paternal_64.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4779751	4779768	.	+	0	Parent=hg002_chrY_paternal_64.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4675686	4781005	.	+	.	ID=hg002_chrY_paternal_64.2;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=NM_032971.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.2;transcript_name=hg002_chrY_paternal_64.2
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4707308	4707413	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4708072	4708130	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	4779751	4781005	.	+	.	Parent=hg002_chrY_paternal_64.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4708099	4708130	.	+	0	Parent=hg002_chrY_paternal_64.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732291	4732861	.	+	1	Parent=hg002_chrY_paternal_64.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4779751	4779768	.	+	0	Parent=hg002_chrY_paternal_64.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4675686	5418108	.	+	.	ID=hg002_chrY_paternal_64.3;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=NM_001395587.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.3;transcript_name=hg002_chrY_paternal_64.3
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	5176485	5176683	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	5257645	5257668	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	5413156	5418108	.	+	.	Parent=hg002_chrY_paternal_64.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732502	4732861	.	+	0	Parent=hg002_chrY_paternal_64.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5176485	5176683	.	+	0	Parent=hg002_chrY_paternal_64.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5257645	5257668	.	+	2	Parent=hg002_chrY_paternal_64.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5413156	5413826	.	+	2	Parent=hg002_chrY_paternal_64.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4675686	5418112	.	+	.	ID=hg002_chrY_paternal_64.4;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=XM_017030079.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.4;transcript_name=hg002_chrY_paternal_64.4
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4678078	4682125	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4706301	4706469	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	4706617	4706748	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	4707308	4707413	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	4708072	4708130	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	5176485	5176683	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	5257645	5257668	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	5413156	5418112	.	+	.	Parent=hg002_chrY_paternal_64.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4708099	4708130	.	+	0	Parent=hg002_chrY_paternal_64.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732291	4732861	.	+	1	Parent=hg002_chrY_paternal_64.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5176485	5176683	.	+	0	Parent=hg002_chrY_paternal_64.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5257645	5257668	.	+	2	Parent=hg002_chrY_paternal_64.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5413156	5413826	.	+	2	Parent=hg002_chrY_paternal_64.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4675686	5418112	.	+	.	ID=hg002_chrY_paternal_64.5;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=XM_017030080.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.5;transcript_name=hg002_chrY_paternal_64.5
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4706301	4706469	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4706617	4706748	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	4707308	4707413	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	4708072	4708130	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	5176485	5176683	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	5257645	5257668	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	5413156	5418112	.	+	.	Parent=hg002_chrY_paternal_64.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4708099	4708130	.	+	0	Parent=hg002_chrY_paternal_64.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732291	4732861	.	+	1	Parent=hg002_chrY_paternal_64.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5176485	5176683	.	+	0	Parent=hg002_chrY_paternal_64.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5257645	5257668	.	+	2	Parent=hg002_chrY_paternal_64.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5413156	5413826	.	+	2	Parent=hg002_chrY_paternal_64.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4675686	5418112	.	+	.	ID=hg002_chrY_paternal_64.6;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=XM_017030081.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.6;transcript_name=hg002_chrY_paternal_64.6
HG002_chrY	Liftoff	exon	4675686	4675995	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4678078	4678148	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4707308	4707413	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	4708072	4708130	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	4732291	4732861	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	5176485	5176683	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	5257645	5257668	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	5413156	5418112	.	+	.	Parent=hg002_chrY_paternal_64.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4708099	4708130	.	+	0	Parent=hg002_chrY_paternal_64.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732291	4732861	.	+	1	Parent=hg002_chrY_paternal_64.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5176485	5176683	.	+	0	Parent=hg002_chrY_paternal_64.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5257645	5257668	.	+	2	Parent=hg002_chrY_paternal_64.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5413156	5413826	.	+	2	Parent=hg002_chrY_paternal_64.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	4694465	4694652	.	+	.	ID=hg002_chrY_paternal_65;gene_name=RNU2-57P;gene_biotype=pseudogene;origin_ID=RNU2-57P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.63_0
HG002_chrY	Liftoff	transcript	4731490	4781005	.	+	.	ID=hg002_chrY_paternal_64.7;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=NM_032972.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.7;transcript_name=hg002_chrY_paternal_64.7
HG002_chrY	Liftoff	exon	4731490	4732861	.	+	.	Parent=hg002_chrY_paternal_64.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	4779751	4781005	.	+	.	Parent=hg002_chrY_paternal_64.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732226	4732861	.	+	0	Parent=hg002_chrY_paternal_64.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4779751	4779768	.	+	0	Parent=hg002_chrY_paternal_64.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	4731492	5418112	.	+	.	ID=hg002_chrY_paternal_64.8;Parent=hg002_chrY_paternal_64;transcript_biotype=protein_coding;origin_ID=NM_032973.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_64;gene_name=PCDH11Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_64.8;transcript_name=hg002_chrY_paternal_64.8
HG002_chrY	Liftoff	exon	4731492	4732861	.	+	.	Parent=hg002_chrY_paternal_64.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	4773622	4776114	.	+	.	Parent=hg002_chrY_paternal_64.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	5176485	5176683	.	+	.	Parent=hg002_chrY_paternal_64.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	5257645	5257668	.	+	.	Parent=hg002_chrY_paternal_64.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	5413156	5418112	.	+	.	Parent=hg002_chrY_paternal_64.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4732226	4732861	.	+	0	Parent=hg002_chrY_paternal_64.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	4773622	4776114	.	+	0	Parent=hg002_chrY_paternal_64.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5176485	5176683	.	+	0	Parent=hg002_chrY_paternal_64.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5257645	5257668	.	+	2	Parent=hg002_chrY_paternal_64.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	5413156	5413826	.	+	2	Parent=hg002_chrY_paternal_64.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	4881780	4883493	.	-	.	ID=hg002_chrY_paternal_66;gene_name=VDAC1P6;gene_biotype=pseudogene;origin_ID=VDAC1P6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.64_0
HG002_chrY	Liftoff	gene	5013025	5014402	.	-	.	ID=hg002_chrY_paternal_67;gene_name=EIF4A1P2;gene_biotype=pseudogene;origin_ID=EIF4A1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.65_0
HG002_chrY	Liftoff	gene	5248959	5250358	.	+	.	ID=hg002_chrY_paternal_68;gene_name=KRT18P10;gene_biotype=pseudogene;origin_ID=KRT18P10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.66_0
HG002_chrY	Liftoff	gene	5310362	5310533	.	-	.	ID=hg002_chrY_paternal_69;gene_name=SNX3P1Y;gene_biotype=pseudogene;origin_ID=SNX3P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.67_0
HG002_chrY	Liftoff	gene	5469139	5469661	.	-	.	ID=hg002_chrY_paternal_70;gene_name=RPL26P37;gene_biotype=pseudogene;origin_ID=RPL26P37;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.68_0
HG002_chrY	Liftoff	gene	5563383	5564619	.	+	.	ID=hg002_chrY_paternal_71;gene_name=TUSC2P1;gene_biotype=pseudogene;origin_ID=TUSC2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.69_0
HG002_chrY	Liftoff	gene	5834622	5835185	.	+	.	ID=hg002_chrY_paternal_72;gene_name=DLGAP5P1;gene_biotype=pseudogene;origin_ID=DLGAP5P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.70_0
HG002_chrY	Liftoff	gene	5918288	5919452	.	-	.	ID=hg002_chrY_paternal_73;gene_name=TTTY23;gene_biotype=lncRNA;origin_ID=TTTY23;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.71_0
HG002_chrY	Liftoff	transcript	5918288	5919452	.	-	.	ID=hg002_chrY_paternal_73.1;Parent=hg002_chrY_paternal_73;transcript_biotype=lnc_RNA;origin_ID=NR_001540.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_73;gene_name=TTTY23;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_73.1;transcript_name=hg002_chrY_paternal_73.1
HG002_chrY	Liftoff	exon	5918288	5918596	.	-	.	Parent=hg002_chrY_paternal_73.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	5919137	5919282	.	-	.	Parent=hg002_chrY_paternal_73.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	5919396	5919452	.	-	.	Parent=hg002_chrY_paternal_73.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	5922065	5924793	.	+	.	ID=hg002_chrY_paternal_74;gene_name=TSPY13P;gene_biotype=pseudogene;origin_ID=TSPY13P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.72_0
HG002_chrY	Liftoff	gene	5958505	5959023	.	-	.	ID=hg002_chrY_paternal_75;gene_name=TSPY18P;gene_biotype=pseudogene;origin_ID=TSPY18P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.73_0
HG002_chrY	Liftoff	gene	5992677	5997226	.	+	.	ID=hg002_chrY_paternal_76;gene_name=RBMY2NP;gene_biotype=pseudogene;origin_ID=RBMY2NP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.74_0
HG002_chrY	Liftoff	gene	6011134	6015340	.	-	.	ID=hg002_chrY_paternal_77;gene_name=LINC00280;gene_biotype=lncRNA;origin_ID=LINC00280;coverage=1.0;sequence_ID=0.995;extra_copy_number=1;copy_num_ID=REF.chrY.173_1
HG002_chrY	Liftoff	transcript	6011134	6015340	.	-	.	ID=hg002_chrY_paternal_77.1;Parent=hg002_chrY_paternal_77;transcript_biotype=lnc_RNA;origin_ID=NR_046505.1;extra_copy_number=1;gene_id=hg002_chrY_paternal_77;gene_name=LINC00280;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_77.1;transcript_name=hg002_chrY_paternal_77.1
HG002_chrY	Liftoff	exon	6011134	6011352	.	-	.	Parent=hg002_chrY_paternal_77.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	6012611	6012753	.	-	.	Parent=hg002_chrY_paternal_77.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	6015255	6015340	.	-	.	Parent=hg002_chrY_paternal_77.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	6015410	6027504	.	-	.	ID=hg002_chrY_paternal_78;gene_name=TTTY22;gene_biotype=lncRNA;origin_ID=TTTY22;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.75_0
HG002_chrY	Liftoff	transcript	6015410	6027504	.	-	.	ID=hg002_chrY_paternal_78.1;Parent=hg002_chrY_paternal_78;transcript_biotype=lnc_RNA;origin_ID=NR_001539.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_78;gene_name=TTTY22;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_78.1;transcript_name=hg002_chrY_paternal_78.1
HG002_chrY	Liftoff	exon	6015410	6015455	.	-	.	Parent=hg002_chrY_paternal_78.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6018546	6018584	.	-	.	Parent=hg002_chrY_paternal_78.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6019270	6019344	.	-	.	Parent=hg002_chrY_paternal_78.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6023770	6023881	.	-	.	Parent=hg002_chrY_paternal_78.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6027350	6027504	.	-	.	Parent=hg002_chrY_paternal_78.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	6030558	6033865	.	-	.	ID=hg002_chrY_paternal_79;gene_name=LOC107987342;gene_biotype=lncRNA;origin_ID=LOC107987342;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.76_0
HG002_chrY	Liftoff	transcript	6030558	6033865	.	-	.	ID=hg002_chrY_paternal_79.1;Parent=hg002_chrY_paternal_79;transcript_biotype=lnc_RNA;origin_ID=XR_001756059.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_79;gene_name=LOC107987342;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_79.1;transcript_name=hg002_chrY_paternal_79.1
HG002_chrY	Liftoff	exon	6030558	6030706	.	-	.	Parent=hg002_chrY_paternal_79.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6033238	6033310	.	-	.	Parent=hg002_chrY_paternal_79.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6033687	6033865	.	-	.	Parent=hg002_chrY_paternal_79.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	6054336	6075499	.	+	.	ID=hg002_chrY_paternal_80;gene_name=TTTY1;gene_biotype=lncRNA;origin_ID=TTTY1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.77_0
HG002_chrY	Liftoff	transcript	6054336	6075499	.	+	.	ID=hg002_chrY_paternal_80.1;Parent=hg002_chrY_paternal_80;transcript_biotype=lnc_RNA;origin_ID=NR_001538.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_80;gene_name=TTTY1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_80.1;transcript_name=hg002_chrY_paternal_80.1
HG002_chrY	Liftoff	exon	6054336	6054610	.	+	.	Parent=hg002_chrY_paternal_80.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6058035	6058194	.	+	.	Parent=hg002_chrY_paternal_80.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6065058	6065166	.	+	.	Parent=hg002_chrY_paternal_80.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6067523	6067660	.	+	.	Parent=hg002_chrY_paternal_80.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6075242	6075499	.	+	.	Parent=hg002_chrY_paternal_80.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	6070179	6092380	.	-	.	ID=hg002_chrY_paternal_81;gene_name=TTTY2B;gene_biotype=lncRNA;origin_ID=TTTY2B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.78_0
HG002_chrY	Liftoff	transcript	6070179	6092380	.	-	.	ID=hg002_chrY_paternal_81.1;Parent=hg002_chrY_paternal_81;transcript_biotype=lnc_RNA;origin_ID=NR_003590.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_81;gene_name=TTTY2B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_81.1;transcript_name=hg002_chrY_paternal_81.1
HG002_chrY	Liftoff	exon	6070179	6070858	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6072082	6072279	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6072400	6072478	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6075309	6075465	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6076158	6076306	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6083701	6083787	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6086264	6086341	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6092176	6092380	.	-	.	Parent=hg002_chrY_paternal_81.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	6107370	6111013	.	+	.	ID=hg002_chrY_paternal_82;gene_name=TTTY21B;gene_biotype=lncRNA;origin_ID=TTTY21B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.79_0
HG002_chrY	Liftoff	transcript	6107370	6111013	.	+	.	ID=hg002_chrY_paternal_82.1;Parent=hg002_chrY_paternal_82;transcript_biotype=lnc_RNA;origin_ID=NR_003588.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_82;gene_name=TTTY21B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_82.1;transcript_name=hg002_chrY_paternal_82.1
HG002_chrY	Liftoff	exon	6107370	6107571	.	+	.	Parent=hg002_chrY_paternal_82.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6110909	6111013	.	+	.	Parent=hg002_chrY_paternal_82.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	6113404	6121842	.	+	.	ID=hg002_chrY_paternal_83;gene_name=TTTY7;gene_biotype=lncRNA;origin_ID=TTTY7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.80_0
HG002_chrY	Liftoff	transcript	6113404	6121842	.	+	.	ID=hg002_chrY_paternal_83.1;Parent=hg002_chrY_paternal_83;transcript_biotype=lnc_RNA;origin_ID=NR_001534.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_83;gene_name=TTTY7;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_83.1;transcript_name=hg002_chrY_paternal_83.1
HG002_chrY	Liftoff	exon	6113404	6113440	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6114382	6114543	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6116851	6116925	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6117614	6118090	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6120008	6120121	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6121095	6121350	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6121597	6121842	.	+	.	Parent=hg002_chrY_paternal_83.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	6134963	6137562	.	-	.	ID=hg002_chrY_paternal_84;gene_name=TTTY8B;gene_biotype=lncRNA;origin_ID=TTTY8B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.81_0
HG002_chrY	Liftoff	transcript	6134963	6137562	.	-	.	ID=hg002_chrY_paternal_84.1;Parent=hg002_chrY_paternal_84;transcript_biotype=lnc_RNA;origin_ID=NR_003591.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_84;gene_name=TTTY8B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_84.1;transcript_name=hg002_chrY_paternal_84.1
HG002_chrY	Liftoff	exon	6134963	6135152	.	-	.	Parent=hg002_chrY_paternal_84.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6136745	6136949	.	-	.	Parent=hg002_chrY_paternal_84.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6137427	6137562	.	-	.	Parent=hg002_chrY_paternal_84.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	6184355	6184867	.	+	.	ID=hg002_chrY_paternal_85;gene_name=TSPY17P;gene_biotype=pseudogene;origin_ID=TSPY17P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.82_0
HG002_chrY	Liftoff	gene	6367131	6367392	.	-	.	ID=hg002_chrY_paternal_86;gene_name=SRIP3;gene_biotype=pseudogene;origin_ID=SRIP3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.83_0
HG002_chrY	Liftoff	gene	6485872	6486425	.	+	.	ID=hg002_chrY_paternal_87;gene_name=GOT2P5;gene_biotype=pseudogene;origin_ID=GOT2P5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.84_0
HG002_chrY	Liftoff	gene	6514092	6559930	.	-	.	ID=hg002_chrY_paternal_88;gene_name=AMELY;gene_biotype=protein_coding;origin_ID=AMELY;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.85_0
HG002_chrY	Liftoff	transcript	6514092	6522203	.	-	.	ID=hg002_chrY_paternal_88.1;Parent=hg002_chrY_paternal_88;transcript_biotype=protein_coding;origin_ID=NM_001364814.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_88;gene_name=AMELY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_88.1;transcript_name=hg002_chrY_paternal_88.1
HG002_chrY	Liftoff	exon	6514092	6514252	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6516212	6516637	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6516907	6516951	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6517043	6517084	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6518182	6518229	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6520731	6520796	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6522148	6522203	.	-	.	Parent=hg002_chrY_paternal_88.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6514247	6514252	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6516212	6516637	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6516907	6516951	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6517043	6517084	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6518182	6518229	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6520731	6520784	.	-	0	Parent=hg002_chrY_paternal_88.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6514092	6559930	.	-	.	ID=hg002_chrY_paternal_88.2;Parent=hg002_chrY_paternal_88;transcript_biotype=protein_coding;origin_ID=NM_001143.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_88;gene_name=AMELY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_88.2;transcript_name=hg002_chrY_paternal_88.2
HG002_chrY	Liftoff	exon	6514092	6514252	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6516212	6516637	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6516907	6516951	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6518182	6518229	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6520731	6520796	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6522148	6522247	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6559851	6559930	.	-	.	Parent=hg002_chrY_paternal_88.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6514247	6514252	.	-	0	Parent=hg002_chrY_paternal_88.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6516212	6516637	.	-	0	Parent=hg002_chrY_paternal_88.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6516907	6516951	.	-	0	Parent=hg002_chrY_paternal_88.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6518182	6518229	.	-	0	Parent=hg002_chrY_paternal_88.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6520731	6520784	.	-	0	Parent=hg002_chrY_paternal_88.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	6549308	6549645	.	+	.	ID=hg002_chrY_paternal_89;gene_name=ATP5PFP1;gene_biotype=pseudogene;origin_ID=ATP5PFP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.86_0
HG002_chrY	Liftoff	gene	6558043	6753867	.	+	.	ID=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;origin_ID=TBL1Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=12;extra_copy_number=0;copy_num_ID=REF.chrY.87_0
HG002_chrY	Liftoff	transcript	6558043	6753867	.	+	.	ID=hg002_chrY_paternal_90.1;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_024452497.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.1;transcript_name=hg002_chrY_paternal_90.1
HG002_chrY	Liftoff	exon	6558043	6558281	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6643986	6644080	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	6748964	6753867	.	+	.	Parent=hg002_chrY_paternal_90.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6748964	6749149	.	+	0	Parent=hg002_chrY_paternal_90.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6739862	.	+	.	ID=hg002_chrY_paternal_90.2;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=NM_033284.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.2;transcript_name=hg002_chrY_paternal_90.2
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6643986	6644080	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	6739651	6739862	.	+	.	Parent=hg002_chrY_paternal_90.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6739651	6739671	.	+	0	Parent=hg002_chrY_paternal_90.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6739862	.	+	.	ID=hg002_chrY_paternal_90.3;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=NM_134258.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.3;transcript_name=hg002_chrY_paternal_90.3
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6643986	6644080	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6739651	6739862	.	+	.	Parent=hg002_chrY_paternal_90.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6739651	6739671	.	+	0	Parent=hg002_chrY_paternal_90.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6739862	.	+	.	ID=hg002_chrY_paternal_90.4;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=NM_134259.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.4;transcript_name=hg002_chrY_paternal_90.4
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6739651	6739862	.	+	.	Parent=hg002_chrY_paternal_90.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6739651	6739671	.	+	0	Parent=hg002_chrY_paternal_90.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6739862	.	+	.	ID=hg002_chrY_paternal_90.5;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442782.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.5;transcript_name=hg002_chrY_paternal_90.5
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6739651	6739862	.	+	.	Parent=hg002_chrY_paternal_90.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6739651	6739671	.	+	0	Parent=hg002_chrY_paternal_90.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.6;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442780.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.6;transcript_name=hg002_chrY_paternal_90.6
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6748964	6753867	.	+	.	Parent=hg002_chrY_paternal_90.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6748964	6749149	.	+	0	Parent=hg002_chrY_paternal_90.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.7;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442781.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.7;transcript_name=hg002_chrY_paternal_90.7
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6748964	6749029	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	6753577	6753867	.	+	.	Parent=hg002_chrY_paternal_90.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6748964	6749029	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6753577	6753585	.	+	0	Parent=hg002_chrY_paternal_90.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.8;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442783.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.8;transcript_name=hg002_chrY_paternal_90.8
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735466	6753867	.	+	.	Parent=hg002_chrY_paternal_90.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735466	6735571	.	+	1	Parent=hg002_chrY_paternal_90.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.9;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442784.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.9;transcript_name=hg002_chrY_paternal_90.9
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735466	6753867	.	+	.	Parent=hg002_chrY_paternal_90.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735466	6735571	.	+	1	Parent=hg002_chrY_paternal_90.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.10;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_017030086.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.10;transcript_name=hg002_chrY_paternal_90.10
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6643986	6644080	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	6748964	6753867	.	+	.	Parent=hg002_chrY_paternal_90.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6748964	6749149	.	+	0	Parent=hg002_chrY_paternal_90.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	transcript	6558875	6753867	.	+	.	ID=hg002_chrY_paternal_90.11;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_047442779.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.11;transcript_name=hg002_chrY_paternal_90.11
HG002_chrY	Liftoff	exon	6558875	6559160	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6560266	6560350	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6626390	6626420	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6669630	6669718	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6673215	6673322	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6691159	6691304	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	6748964	6753867	.	+	.	Parent=hg002_chrY_paternal_90.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6673265	6673322	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691159	6691304	.	+	2	Parent=hg002_chrY_paternal_90.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6748964	6749149	.	+	0	Parent=hg002_chrY_paternal_90.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	gene	6598603	6598793	.	+	.	ID=hg002_chrY_paternal_91;gene_name=FAM199YP;gene_biotype=pseudogene;origin_ID=FAM199YP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.88_0
HG002_chrY	Liftoff	transcript	6690790	6739862	.	+	.	ID=hg002_chrY_paternal_90.12;Parent=hg002_chrY_paternal_90;transcript_biotype=protein_coding;origin_ID=XM_005262572.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_90;gene_name=TBL1Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_90.12;transcript_name=hg002_chrY_paternal_90.12
HG002_chrY	Liftoff	exon	6690790	6691304	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6712078	6712330	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718377	6718509	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6718901	6719042	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719741	6719804	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	6719914	6720011	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	6722741	6722801	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	6728913	6729034	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734077	6734151	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	6734469	6734596	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	6735446	6735611	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	6738268	6738369	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	6739651	6739862	.	+	.	Parent=hg002_chrY_paternal_90.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6691059	6691304	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6712078	6712330	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718377	6718509	.	+	2	Parent=hg002_chrY_paternal_90.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6718901	6719042	.	+	1	Parent=hg002_chrY_paternal_90.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719741	6719804	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6719914	6720011	.	+	2	Parent=hg002_chrY_paternal_90.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6722741	6722801	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6728913	6729034	.	+	2	Parent=hg002_chrY_paternal_90.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734077	6734151	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6734469	6734596	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6735446	6735611	.	+	1	Parent=hg002_chrY_paternal_90.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6738268	6738369	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	6739651	6739671	.	+	0	Parent=hg002_chrY_paternal_90.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	gene	6748577	6754684	.	-	.	ID=hg002_chrY_paternal_92;gene_name=GPR143P;gene_biotype=pseudogene;origin_ID=GPR143P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.89_0
HG002_chrY	Liftoff	gene	6922146	7029717	.	+	.	ID=hg002_chrY_paternal_93;gene_name=PRKY;gene_biotype=transcribed_pseudogene;origin_ID=PRKY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.90_0
HG002_chrY	Liftoff	transcript	6922146	7029717	.	+	.	ID=hg002_chrY_paternal_93.1;Parent=hg002_chrY_paternal_93;transcript_biotype=transcript;origin_ID=NR_028062.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_93;gene_name=PRKY;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_93.1;transcript_name=hg002_chrY_paternal_93.1
HG002_chrY	Liftoff	exon	6922146	6922652	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	6952107	6952275	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	6974077	6974340	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	6989286	6989405	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	7004303	7004398	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	7015526	7015603	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	7019913	7020059	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	7023882	7029717	.	+	.	Parent=hg002_chrY_paternal_93.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	gene	6972468	6972766	.	-	.	ID=hg002_chrY_paternal_94;gene_name=RN7SKP282;gene_biotype=pseudogene;origin_ID=RN7SKP282;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.91_0
HG002_chrY	Liftoff	gene	7026843	7026949	.	+	.	ID=hg002_chrY_paternal_95;gene_name=RNU6-941P;gene_biotype=pseudogene;origin_ID=RNU6-941P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.92_0
HG002_chrY	Liftoff	gene	7071224	7071328	.	-	.	ID=hg002_chrY_paternal_96;gene_name=RNU6-521P;gene_biotype=pseudogene;origin_ID=RNU6-521P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.93_0
HG002_chrY	Liftoff	gene	7106779	7168795	.	+	.	ID=hg002_chrY_paternal_97;gene_name=LOC107987338;gene_biotype=lncRNA;origin_ID=LOC107987338;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.94_0
HG002_chrY	Liftoff	transcript	7106779	7168795	.	+	.	ID=hg002_chrY_paternal_97.1;Parent=hg002_chrY_paternal_97;transcript_biotype=lnc_RNA;origin_ID=XR_001756055.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_97;gene_name=LOC107987338;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_97.1;transcript_name=hg002_chrY_paternal_97.1
HG002_chrY	Liftoff	exon	7106779	7106892	.	+	.	Parent=hg002_chrY_paternal_97.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	7149189	7149347	.	+	.	Parent=hg002_chrY_paternal_97.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7167139	7167247	.	+	.	Parent=hg002_chrY_paternal_97.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	7168280	7168795	.	+	.	Parent=hg002_chrY_paternal_97.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	7308719	7309297	.	-	.	ID=hg002_chrY_paternal_98;gene_name=TTTY26P;gene_biotype=pseudogene;origin_ID=TTTY26P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.95_0
HG002_chrY	Liftoff	gene	7319994	7326537	.	-	.	ID=hg002_chrY_paternal_99;gene_name=RBMY2HP;gene_biotype=pseudogene;origin_ID=RBMY2HP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.96_0
HG002_chrY	Liftoff	gene	7335318	7338110	.	-	.	ID=hg002_chrY_paternal_100;gene_name=TSPY12P;gene_biotype=pseudogene;origin_ID=TSPY12P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.97_0
HG002_chrY	Liftoff	gene	7347874	7349764	.	-	.	ID=hg002_chrY_paternal_101;gene_name=TTTY16;gene_biotype=lncRNA;origin_ID=TTTY16;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.98_0
HG002_chrY	Liftoff	transcript	7347874	7349764	.	-	.	ID=hg002_chrY_paternal_101.1;Parent=hg002_chrY_paternal_101;transcript_biotype=lnc_RNA;origin_ID=NR_001552.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_101;gene_name=TTTY16;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_101.1;transcript_name=hg002_chrY_paternal_101.1
HG002_chrY	Liftoff	exon	7347874	7348004	.	-	.	Parent=hg002_chrY_paternal_101.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7349704	7349764	.	-	.	Parent=hg002_chrY_paternal_101.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	7361494	7428538	.	-	.	ID=hg002_chrY_paternal_102;gene_name=RFTN1P1;gene_biotype=pseudogene;origin_ID=RFTN1P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.99_0
HG002_chrY	Liftoff	gene	7431295	7461698	.	-	.	ID=hg002_chrY_paternal_103;gene_name=LOC107987339;gene_biotype=lncRNA;origin_ID=LOC107987339;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.100_0
HG002_chrY	Liftoff	transcript	7431295	7461698	.	-	.	ID=hg002_chrY_paternal_103.1;Parent=hg002_chrY_paternal_103;transcript_biotype=lnc_RNA;origin_ID=XR_001756056.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_103;gene_name=LOC107987339;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_103.1;transcript_name=hg002_chrY_paternal_103.1
HG002_chrY	Liftoff	exon	7431295	7431342	.	-	.	Parent=hg002_chrY_paternal_103.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	7457323	7457432	.	-	.	Parent=hg002_chrY_paternal_103.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7460982	7461698	.	-	.	Parent=hg002_chrY_paternal_103.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	7455843	7462511	.	+	.	ID=hg002_chrY_paternal_104;gene_name=TTTY12;gene_biotype=lncRNA;origin_ID=TTTY12;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.101_0
HG002_chrY	Liftoff	transcript	7455843	7462511	.	+	.	ID=hg002_chrY_paternal_104.1;Parent=hg002_chrY_paternal_104;transcript_biotype=lnc_RNA;origin_ID=NR_001551.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_104;gene_name=TTTY12;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_104.1;transcript_name=hg002_chrY_paternal_104.1
HG002_chrY	Liftoff	exon	7455843	7455890	.	+	.	Parent=hg002_chrY_paternal_104.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	7456752	7456907	.	+	.	Parent=hg002_chrY_paternal_104.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7461689	7462511	.	+	.	Parent=hg002_chrY_paternal_104.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	7455843	7462511	.	+	.	ID=hg002_chrY_paternal_104.2;Parent=hg002_chrY_paternal_104;transcript_biotype=lnc_RNA;origin_ID=NR_174112.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_104;gene_name=TTTY12;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_104.2;transcript_name=hg002_chrY_paternal_104.2
HG002_chrY	Liftoff	exon	7455843	7455890	.	+	.	Parent=hg002_chrY_paternal_104.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	7456752	7456907	.	+	.	Parent=hg002_chrY_paternal_104.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7457372	7457453	.	+	.	Parent=hg002_chrY_paternal_104.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	7461689	7462511	.	+	.	Parent=hg002_chrY_paternal_104.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	7482643	7510584	.	-	.	ID=hg002_chrY_paternal_105;gene_name=LOC105377229;gene_biotype=lncRNA;origin_ID=LOC105377229;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.102_0
HG002_chrY	Liftoff	transcript	7482643	7510584	.	-	.	ID=hg002_chrY_paternal_105.1;Parent=hg002_chrY_paternal_105;transcript_biotype=lnc_RNA;origin_ID=XR_938644.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_105;gene_name=LOC105377229;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_105.1;transcript_name=hg002_chrY_paternal_105.1
HG002_chrY	Liftoff	exon	7482643	7483918	.	-	.	Parent=hg002_chrY_paternal_105.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	7484066	7484237	.	-	.	Parent=hg002_chrY_paternal_105.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	7484806	7484930	.	-	.	Parent=hg002_chrY_paternal_105.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	7510516	7510584	.	-	.	Parent=hg002_chrY_paternal_105.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	7497311	7498291	.	-	.	ID=hg002_chrY_paternal_106;gene_name=TRIM60P1Y;gene_biotype=pseudogene;origin_ID=TRIM60P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.103_0
HG002_chrY	Liftoff	gene	7505536	7506669	.	-	.	ID=hg002_chrY_paternal_107;gene_name=ZNF92P1Y;gene_biotype=pseudogene;origin_ID=ZNF92P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.104_0
HG002_chrY	Liftoff	gene	7557366	7559147	.	-	.	ID=hg002_chrY_paternal_108;gene_name=TRIM60P2Y;gene_biotype=pseudogene;origin_ID=TRIM60P2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.105_0
HG002_chrY	Liftoff	gene	7565064	7565970	.	-	.	ID=hg002_chrY_paternal_109;gene_name=ZNF736P8Y;gene_biotype=pseudogene;origin_ID=ZNF736P8Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.106_0
HG002_chrY	Liftoff	gene	7577919	7600829	.	-	.	ID=hg002_chrY_paternal_110;gene_name=BPY2DP;gene_biotype=pseudogene;origin_ID=BPY2DP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.107_0
HG002_chrY	Liftoff	gene	7642581	7643768	.	-	.	ID=hg002_chrY_paternal_111;gene_name=ZNF736P7Y;gene_biotype=pseudogene;origin_ID=ZNF736P7Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.108_0
HG002_chrY	Liftoff	gene	7720739	7721963	.	-	.	ID=hg002_chrY_paternal_112;gene_name=ZNF736P9Y;gene_biotype=pseudogene;origin_ID=ZNF736P9Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.109_0
HG002_chrY	Liftoff	gene	7778968	7796474	.	+	.	ID=hg002_chrY_paternal_113;gene_name=RBMY2JP;gene_biotype=pseudogene;origin_ID=RBMY2JP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.110_0
HG002_chrY	Liftoff	gene	7829676	7831017	.	-	.	ID=hg002_chrY_paternal_114;gene_name=FAM8A7P;gene_biotype=pseudogene;origin_ID=FAM8A7P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.111_0
HG002_chrY	Liftoff	gene	7905578	7906072	.	-	.	ID=hg002_chrY_paternal_115;gene_name=TTTY30P;gene_biotype=pseudogene;origin_ID=TTTY30P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.112_0
HG002_chrY	Liftoff	gene	7915967	7928992	.	-	.	ID=hg002_chrY_paternal_116;gene_name=RBMY2KP;gene_biotype=pseudogene;origin_ID=RBMY2KP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.113_0
HG002_chrY	Liftoff	gene	7931995	7934006	.	+	.	ID=hg002_chrY_paternal_117;gene_name=TSPY24P;gene_biotype=pseudogene;origin_ID=TSPY24P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.114_0
HG002_chrY	Liftoff	gene	8002692	8003918	.	+	.	ID=hg002_chrY_paternal_118;gene_name=ZNF736P6Y;gene_biotype=pseudogene;origin_ID=ZNF736P6Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.115_0
HG002_chrY	Liftoff	gene	8015310	8015733	.	-	.	ID=hg002_chrY_paternal_119;gene_name=MTND6P1;gene_biotype=pseudogene;origin_ID=MTND6P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.116_0
HG002_chrY	Liftoff	gene	8015806	8016916	.	+	.	ID=hg002_chrY_paternal_120;gene_name=MTCYBP1;gene_biotype=pseudogene;origin_ID=MTCYBP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.117_0
HG002_chrY	Liftoff	gene	8023429	8023796	.	+	.	ID=hg002_chrY_paternal_121;gene_name=MTND1P1;gene_biotype=pseudogene;origin_ID=MTND1P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.118_0
HG002_chrY	Liftoff	gene	8023865	8023939	.	-	.	ID=hg002_chrY_paternal_122;gene_name=NMTRQ-TTG8-1;gene_biotype=pseudogene;origin_ID=NMTRQ-TTG8-1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.119_0
HG002_chrY	Liftoff	gene	8024007	8024476	.	+	.	ID=hg002_chrY_paternal_123;gene_name=MTND2P3;gene_biotype=pseudogene;origin_ID=MTND2P3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.120_0
HG002_chrY	Liftoff	gene	8046813	8059080	.	+	.	ID=hg002_chrY_paternal_124;gene_name=LOC105377231;gene_biotype=lncRNA;origin_ID=LOC105377231;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.121_0
HG002_chrY	Liftoff	transcript	8046813	8059080	.	+	.	ID=hg002_chrY_paternal_124.1;Parent=hg002_chrY_paternal_124;transcript_biotype=lnc_RNA;origin_ID=XR_938646.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_124;gene_name=LOC105377231;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_124.1;transcript_name=hg002_chrY_paternal_124.1
HG002_chrY	Liftoff	exon	8046813	8046898	.	+	.	Parent=hg002_chrY_paternal_124.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8054493	8054746	.	+	.	Parent=hg002_chrY_paternal_124.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8055448	8055600	.	+	.	Parent=hg002_chrY_paternal_124.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8058893	8059080	.	+	.	Parent=hg002_chrY_paternal_124.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	8046813	8059080	.	+	.	ID=hg002_chrY_paternal_124.2;Parent=hg002_chrY_paternal_124;transcript_biotype=lnc_RNA;origin_ID=XR_938647.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_124;gene_name=LOC105377231;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_124.2;transcript_name=hg002_chrY_paternal_124.2
HG002_chrY	Liftoff	exon	8046813	8046898	.	+	.	Parent=hg002_chrY_paternal_124.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8054493	8054736	.	+	.	Parent=hg002_chrY_paternal_124.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8055448	8055600	.	+	.	Parent=hg002_chrY_paternal_124.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8058893	8059080	.	+	.	Parent=hg002_chrY_paternal_124.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	8064812	8065820	.	-	.	ID=hg002_chrY_paternal_125;gene_name=TRIM60P3Y;gene_biotype=pseudogene;origin_ID=TRIM60P3Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.122_0
HG002_chrY	Liftoff	gene	8070617	8071689	.	-	.	ID=hg002_chrY_paternal_126;gene_name=ZNF736P10Y;gene_biotype=pseudogene;origin_ID=ZNF736P10Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.123_0
HG002_chrY	Liftoff	gene	8165895	8166290	.	+	.	ID=hg002_chrY_paternal_127;gene_name=TTTY27P;gene_biotype=pseudogene;origin_ID=TTTY27P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.124_0
HG002_chrY	Liftoff	gene	8200796	8203006	.	-	.	ID=hg002_chrY_paternal_128;gene_name=LOC105377232;gene_biotype=lncRNA;origin_ID=LOC105377232;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.125_0
HG002_chrY	Liftoff	transcript	8200796	8203006	.	-	.	ID=hg002_chrY_paternal_128.1;Parent=hg002_chrY_paternal_128;transcript_biotype=lnc_RNA;origin_ID=XR_938648.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_128;gene_name=LOC105377232;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_128.1;transcript_name=hg002_chrY_paternal_128.1
HG002_chrY	Liftoff	exon	8200796	8200810	.	-	.	Parent=hg002_chrY_paternal_128.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8201496	8201570	.	-	.	Parent=hg002_chrY_paternal_128.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8202993	8203006	.	-	.	Parent=hg002_chrY_paternal_128.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8212491	8213977	.	-	.	ID=hg002_chrY_paternal_129;gene_name=LOC107987354;gene_biotype=lncRNA;origin_ID=LOC107987354;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.126_0
HG002_chrY	Liftoff	transcript	8212491	8213977	.	-	.	ID=hg002_chrY_paternal_129.1;Parent=hg002_chrY_paternal_129;transcript_biotype=lnc_RNA;origin_ID=XR_001756088.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_129;gene_name=LOC107987354;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_129.1;transcript_name=hg002_chrY_paternal_129.1
HG002_chrY	Liftoff	exon	8212491	8212649	.	-	.	Parent=hg002_chrY_paternal_129.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8212801	8212875	.	-	.	Parent=hg002_chrY_paternal_129.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8213840	8213977	.	-	.	Parent=hg002_chrY_paternal_129.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8290118	8296953	.	+	.	ID=hg002_chrY_paternal_130;gene_name=LINC00279;gene_biotype=lncRNA;origin_ID=LINC00279;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.127_0
HG002_chrY	Liftoff	transcript	8290118	8296953	.	+	.	ID=hg002_chrY_paternal_130.1;Parent=hg002_chrY_paternal_130;transcript_biotype=lnc_RNA;origin_ID=NR_138045.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_130;gene_name=LINC00279;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_130.1;transcript_name=hg002_chrY_paternal_130.1
HG002_chrY	Liftoff	exon	8290118	8290230	.	+	.	Parent=hg002_chrY_paternal_130.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8295956	8296151	.	+	.	Parent=hg002_chrY_paternal_130.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8296503	8296745	.	+	.	Parent=hg002_chrY_paternal_130.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8296878	8296953	.	+	.	Parent=hg002_chrY_paternal_130.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	8311868	8312709	.	+	.	ID=hg002_chrY_paternal_131;gene_name=LOC107987340;gene_biotype=lncRNA;origin_ID=LOC107987340;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.128_0
HG002_chrY	Liftoff	transcript	8311868	8312709	.	+	.	ID=hg002_chrY_paternal_131.1;Parent=hg002_chrY_paternal_131;transcript_biotype=lnc_RNA;origin_ID=XR_001756057.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_131;gene_name=LOC107987340;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_131.1;transcript_name=hg002_chrY_paternal_131.1
HG002_chrY	Liftoff	exon	8311868	8311989	.	+	.	Parent=hg002_chrY_paternal_131.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8312325	8312709	.	+	.	Parent=hg002_chrY_paternal_131.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	8335196	8335704	.	-	.	ID=hg002_chrY_paternal_132;gene_name=TTTY18;gene_biotype=lncRNA;origin_ID=TTTY18;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.129_0
HG002_chrY	Liftoff	transcript	8335196	8335704	.	-	.	ID=hg002_chrY_paternal_132.1;Parent=hg002_chrY_paternal_132;transcript_biotype=lnc_RNA;origin_ID=NR_001550.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_132;gene_name=TTTY18;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_132.1;transcript_name=hg002_chrY_paternal_132.1
HG002_chrY	Liftoff	exon	8335196	8335258	.	-	.	Parent=hg002_chrY_paternal_132.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8335547	8335704	.	-	.	Parent=hg002_chrY_paternal_132.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8345723	8347144	.	-	.	ID=hg002_chrY_paternal_133;gene_name=LOC105377234;gene_biotype=lncRNA;origin_ID=LOC105377234;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.130_0
HG002_chrY	Liftoff	transcript	8345723	8347144	.	-	.	ID=hg002_chrY_paternal_133.1;Parent=hg002_chrY_paternal_133;transcript_biotype=lnc_RNA;origin_ID=XR_938652.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_133;gene_name=LOC105377234;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_133.1;transcript_name=hg002_chrY_paternal_133.1
HG002_chrY	Liftoff	exon	8345723	8345809	.	-	.	Parent=hg002_chrY_paternal_133.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8346294	8346371	.	-	.	Parent=hg002_chrY_paternal_133.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8346953	8347144	.	-	.	Parent=hg002_chrY_paternal_133.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8356321	8357132	.	+	.	ID=hg002_chrY_paternal_134;gene_name=TTTY19;gene_biotype=lncRNA;origin_ID=TTTY19;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.131_0
HG002_chrY	Liftoff	transcript	8356321	8357132	.	+	.	ID=hg002_chrY_paternal_134.1;Parent=hg002_chrY_paternal_134;transcript_biotype=lnc_RNA;origin_ID=NR_001549.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_134;gene_name=TTTY19;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_134.1;transcript_name=hg002_chrY_paternal_134.1
HG002_chrY	Liftoff	exon	8356321	8356408	.	+	.	Parent=hg002_chrY_paternal_134.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8356952	8357132	.	+	.	Parent=hg002_chrY_paternal_134.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	8373655	8376140	.	-	.	ID=hg002_chrY_paternal_135;gene_name=LOC105377235;gene_biotype=lncRNA;origin_ID=LOC105377235;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.132_0
HG002_chrY	Liftoff	transcript	8373655	8376140	.	-	.	ID=hg002_chrY_paternal_135.1;Parent=hg002_chrY_paternal_135;transcript_biotype=lnc_RNA;origin_ID=XR_938654.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_135;gene_name=LOC105377235;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_135.1;transcript_name=hg002_chrY_paternal_135.1
HG002_chrY	Liftoff	exon	8373655	8373938	.	-	.	Parent=hg002_chrY_paternal_135.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8374036	8374131	.	-	.	Parent=hg002_chrY_paternal_135.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8374222	8374484	.	-	.	Parent=hg002_chrY_paternal_135.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8375953	8376140	.	-	.	Parent=hg002_chrY_paternal_135.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8435178	8469244	.	-	.	ID=hg002_chrY_paternal_136;gene_name=TTTY11;gene_biotype=lncRNA;origin_ID=TTTY11;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.133_0
HG002_chrY	Liftoff	transcript	8435178	8469244	.	-	.	ID=hg002_chrY_paternal_136.1;Parent=hg002_chrY_paternal_136;transcript_biotype=lnc_RNA;origin_ID=NR_001548.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_136;gene_name=TTTY11;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_136.1;transcript_name=hg002_chrY_paternal_136.1
HG002_chrY	Liftoff	exon	8435178	8435271	.	-	.	Parent=hg002_chrY_paternal_136.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	8435753	8436068	.	-	.	Parent=hg002_chrY_paternal_136.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8440865	8441167	.	-	.	Parent=hg002_chrY_paternal_136.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8446726	8446809	.	-	.	Parent=hg002_chrY_paternal_136.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8469208	8469244	.	-	.	Parent=hg002_chrY_paternal_136.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8556126	8568288	.	+	.	ID=hg002_chrY_paternal_137;gene_name=RBMY2MP;gene_biotype=pseudogene;origin_ID=RBMY2MP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.134_0
HG002_chrY	Liftoff	gene	8578990	8579947	.	+	.	ID=hg002_chrY_paternal_138;gene_name=TTTY31P;gene_biotype=pseudogene;origin_ID=TTTY31P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.135_0
HG002_chrY	Liftoff	gene	8622006	8622395	.	+	.	ID=hg002_chrY_paternal_139;gene_name=TTTY24P;gene_biotype=pseudogene;origin_ID=TTTY24P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.136_0
HG002_chrY	Liftoff	gene	8686064	8692142	.	+	.	ID=hg002_chrY_paternal_140;gene_name=OFD1P3Y;gene_biotype=pseudogene;origin_ID=OFD1P3Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.137_0
HG002_chrY	Liftoff	gene	8767204	8770003	.	-	.	ID=hg002_chrY_paternal_141;gene_name=CDY3P;gene_biotype=pseudogene;origin_ID=CDY3P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.138_0
HG002_chrY	Liftoff	gene	8787575	8787788	.	+	.	ID=hg002_chrY_paternal_142;gene_name=USP9YP22;gene_biotype=pseudogene;origin_ID=USP9YP22;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.139_0
HG002_chrY	Liftoff	gene	8792153	8792563	.	-	.	ID=hg002_chrY_paternal_143;gene_name=USP9YP4;gene_biotype=pseudogene;origin_ID=USP9YP4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.140_0
HG002_chrY	Liftoff	gene	8832918	8833239	.	+	.	ID=hg002_chrY_paternal_144;gene_name=ELOCP4;gene_biotype=pseudogene;origin_ID=ELOCP4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.141_0
HG002_chrY	Liftoff	gene	8866842	8871706	.	+	.	ID=hg002_chrY_paternal_145;gene_name=LOC105379264;gene_biotype=lncRNA;origin_ID=LOC105379264;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.142_0
HG002_chrY	Liftoff	transcript	8866842	8871706	.	+	.	ID=hg002_chrY_paternal_145.1;Parent=hg002_chrY_paternal_145;transcript_biotype=lnc_RNA;origin_ID=XR_949065.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_145;gene_name=LOC105379264;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_145.1;transcript_name=hg002_chrY_paternal_145.1
HG002_chrY	Liftoff	exon	8866842	8866916	.	+	.	Parent=hg002_chrY_paternal_145.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8867071	8867175	.	+	.	Parent=hg002_chrY_paternal_145.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8869238	8869313	.	+	.	Parent=hg002_chrY_paternal_145.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8871623	8871706	.	+	.	Parent=hg002_chrY_paternal_145.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	8876395	8884941	.	+	.	ID=hg002_chrY_paternal_146;gene_name=LOC105379265;gene_biotype=lncRNA;origin_ID=LOC105379265;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.143_0
HG002_chrY	Liftoff	transcript	8876395	8884941	.	+	.	ID=hg002_chrY_paternal_146.1;Parent=hg002_chrY_paternal_146;transcript_biotype=lnc_RNA;origin_ID=XR_949066.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_146;gene_name=LOC105379265;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_146.1;transcript_name=hg002_chrY_paternal_146.1
HG002_chrY	Liftoff	exon	8876395	8876950	.	+	.	Parent=hg002_chrY_paternal_146.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8878059	8878200	.	+	.	Parent=hg002_chrY_paternal_146.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8880345	8880431	.	+	.	Parent=hg002_chrY_paternal_146.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8884813	8884941	.	+	.	Parent=hg002_chrY_paternal_146.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	8890975	8893226	.	+	.	ID=hg002_chrY_paternal_147;gene_name=LOC105379266;gene_biotype=lncRNA;origin_ID=LOC105379266;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.144_0
HG002_chrY	Liftoff	transcript	8890975	8893226	.	+	.	ID=hg002_chrY_paternal_147.1;Parent=hg002_chrY_paternal_147;transcript_biotype=lnc_RNA;origin_ID=XR_949068.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_147;gene_name=LOC105379266;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_147.1;transcript_name=hg002_chrY_paternal_147.1
HG002_chrY	Liftoff	exon	8890975	8891100	.	+	.	Parent=hg002_chrY_paternal_147.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8891181	8891259	.	+	.	Parent=hg002_chrY_paternal_147.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8891945	8893226	.	+	.	Parent=hg002_chrY_paternal_147.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	8894382	8906612	.	+	.	ID=hg002_chrY_paternal_148;gene_name=LOC105379267;gene_biotype=lncRNA;origin_ID=LOC105379267;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.145_0
HG002_chrY	Liftoff	transcript	8894382	8906612	.	+	.	ID=hg002_chrY_paternal_148.1;Parent=hg002_chrY_paternal_148;transcript_biotype=lnc_RNA;origin_ID=XR_949069.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_148;gene_name=LOC105379267;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_148.1;transcript_name=hg002_chrY_paternal_148.1
HG002_chrY	Liftoff	exon	8894382	8894553	.	+	.	Parent=hg002_chrY_paternal_148.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8895799	8895873	.	+	.	Parent=hg002_chrY_paternal_148.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8906542	8906612	.	+	.	Parent=hg002_chrY_paternal_148.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	8919060	8924875	.	-	.	ID=hg002_chrY_paternal_149;gene_name=RBMY1A3P;gene_biotype=transcribed_pseudogene;origin_ID=RBMY1A3P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.146_0
HG002_chrY	Liftoff	transcript	8919060	8924875	.	-	.	ID=hg002_chrY_paternal_149.1;Parent=hg002_chrY_paternal_149;transcript_biotype=transcript;origin_ID=NR_001547.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_149;gene_name=RBMY1A3P;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_149.1;transcript_name=hg002_chrY_paternal_149.1
HG002_chrY	Liftoff	exon	8919060	8919090	.	-	.	Parent=hg002_chrY_paternal_149.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8920991	8921168	.	-	.	Parent=hg002_chrY_paternal_149.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8924184	8924287	.	-	.	Parent=hg002_chrY_paternal_149.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8924762	8924875	.	-	.	Parent=hg002_chrY_paternal_149.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8927491	8932588	.	+	.	ID=hg002_chrY_paternal_150;gene_name=RBMY1GP;gene_biotype=pseudogene;origin_ID=RBMY1GP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.147_0
HG002_chrY	Liftoff	gene	8931881	8936833	.	-	.	ID=hg002_chrY_paternal_151;gene_name=TTTY20;gene_biotype=lncRNA;origin_ID=TTTY20;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.148_0
HG002_chrY	Liftoff	transcript	8931881	8936833	.	-	.	ID=hg002_chrY_paternal_151.1;Parent=hg002_chrY_paternal_151;transcript_biotype=lnc_RNA;origin_ID=NR_001546.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_151;gene_name=TTTY20;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_151.1;transcript_name=hg002_chrY_paternal_151.1
HG002_chrY	Liftoff	exon	8931881	8932057	.	-	.	Parent=hg002_chrY_paternal_151.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8936752	8936833	.	-	.	Parent=hg002_chrY_paternal_151.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	8939465	8942261	.	+	.	ID=hg002_chrY_paternal_152;gene_name=TSPY8;gene_biotype=protein_coding;origin_ID=TSPY8;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=2;copy_num_ID=REF.chrY.149_2
HG002_chrY	Liftoff	transcript	8939465	8942261	.	+	.	ID=hg002_chrY_paternal_152.1;Parent=hg002_chrY_paternal_152;transcript_biotype=protein_coding;origin_ID=NM_001243721.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_152;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_152.1;transcript_name=hg002_chrY_paternal_152.1
HG002_chrY	Liftoff	exon	8939465	8939996	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940604	8940681	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940810	8940921	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941023	8941168	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941275	8941356	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	8942051	8942261	.	+	.	Parent=hg002_chrY_paternal_152.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8939511	8939996	.	+	0	Parent=hg002_chrY_paternal_152.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940604	8940681	.	+	0	Parent=hg002_chrY_paternal_152.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940810	8940921	.	+	0	Parent=hg002_chrY_paternal_152.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941023	8941168	.	+	2	Parent=hg002_chrY_paternal_152.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941275	8941356	.	+	0	Parent=hg002_chrY_paternal_152.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8942051	8942073	.	+	2	Parent=hg002_chrY_paternal_152.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	8939465	8942261	.	+	.	ID=hg002_chrY_paternal_152.2;Parent=hg002_chrY_paternal_152;transcript_biotype=protein_coding;origin_ID=XM_005272744.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_152;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_152.2;transcript_name=hg002_chrY_paternal_152.2
HG002_chrY	Liftoff	exon	8939465	8939996	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940604	8940681	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940810	8940921	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941023	8941168	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941264	8941356	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	8942051	8942261	.	+	.	Parent=hg002_chrY_paternal_152.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8939511	8939996	.	+	0	Parent=hg002_chrY_paternal_152.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940604	8940681	.	+	0	Parent=hg002_chrY_paternal_152.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940810	8940921	.	+	0	Parent=hg002_chrY_paternal_152.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941023	8941168	.	+	2	Parent=hg002_chrY_paternal_152.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941264	8941326	.	+	0	Parent=hg002_chrY_paternal_152.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	8939465	8942261	.	+	.	ID=hg002_chrY_paternal_152.3;Parent=hg002_chrY_paternal_152;transcript_biotype=protein_coding;origin_ID=XM_011544005.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_152;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_152.3;transcript_name=hg002_chrY_paternal_152.3
HG002_chrY	Liftoff	exon	8939465	8939996	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940604	8940681	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940810	8940921	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941030	8941168	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941275	8941356	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	8942051	8942261	.	+	.	Parent=hg002_chrY_paternal_152.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8939511	8939996	.	+	0	Parent=hg002_chrY_paternal_152.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940604	8940681	.	+	0	Parent=hg002_chrY_paternal_152.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8940810	8940921	.	+	0	Parent=hg002_chrY_paternal_152.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941030	8941168	.	+	2	Parent=hg002_chrY_paternal_152.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	8941275	8941326	.	+	1	Parent=hg002_chrY_paternal_152.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	8939465	8942261	.	+	.	ID=hg002_chrY_paternal_152.4;Parent=hg002_chrY_paternal_152;transcript_biotype=transcript;origin_ID=XR_949064.3;extra_copy_number=2;gene_id=hg002_chrY_paternal_152;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_152.4;transcript_name=hg002_chrY_paternal_152.4
HG002_chrY	Liftoff	exon	8939465	8939996	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940604	8940681	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	8940810	8940921	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941030	8941168	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	8941264	8941356	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	8942051	8942261	.	+	.	Parent=hg002_chrY_paternal_152.4;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	gene	8951530	8957148	.	-	.	ID=hg002_chrY_paternal_153;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=0.997;extra_copy_number=12;copy_num_ID=REF.chrY.159_12
HG002_chrY	Liftoff	transcript	8951530	8957148	.	-	.	ID=hg002_chrY_paternal_153.1;Parent=hg002_chrY_paternal_153;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=12;gene_id=hg002_chrY_paternal_153;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_153.1;transcript_name=hg002_chrY_paternal_153.1
HG002_chrY	Liftoff	exon	8951530	8951589	.	-	.	Parent=hg002_chrY_paternal_153.1;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	8955140	8955298	.	-	.	Parent=hg002_chrY_paternal_153.1;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	8956815	8956960	.	-	.	Parent=hg002_chrY_paternal_153.1;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	8957047	8957148	.	-	.	Parent=hg002_chrY_paternal_153.1;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	gene	8959761	8962557	.	+	.	ID=hg002_chrY_paternal_154;gene_name=TSPY8;gene_biotype=protein_coding;origin_ID=TSPY8;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.149_0
HG002_chrY	Liftoff	transcript	8959761	8962557	.	+	.	ID=hg002_chrY_paternal_154.1;Parent=hg002_chrY_paternal_154;transcript_biotype=protein_coding;origin_ID=NM_001243721.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_154;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_154.1;transcript_name=hg002_chrY_paternal_154.1
HG002_chrY	Liftoff	exon	8959761	8960292	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8960900	8960977	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961106	8961217	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961319	8961464	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961571	8961652	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	8962347	8962557	.	+	.	Parent=hg002_chrY_paternal_154.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8959807	8960292	.	+	0	Parent=hg002_chrY_paternal_154.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8960900	8960977	.	+	0	Parent=hg002_chrY_paternal_154.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961106	8961217	.	+	0	Parent=hg002_chrY_paternal_154.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961319	8961464	.	+	2	Parent=hg002_chrY_paternal_154.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961571	8961652	.	+	0	Parent=hg002_chrY_paternal_154.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8962347	8962369	.	+	2	Parent=hg002_chrY_paternal_154.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	8959761	8962557	.	+	.	ID=hg002_chrY_paternal_154.2;Parent=hg002_chrY_paternal_154;transcript_biotype=protein_coding;origin_ID=XM_005272744.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_154;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_154.2;transcript_name=hg002_chrY_paternal_154.2
HG002_chrY	Liftoff	exon	8959761	8960292	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8960900	8960977	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961106	8961217	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961319	8961464	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961560	8961652	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	8962347	8962557	.	+	.	Parent=hg002_chrY_paternal_154.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8959807	8960292	.	+	0	Parent=hg002_chrY_paternal_154.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8960900	8960977	.	+	0	Parent=hg002_chrY_paternal_154.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961106	8961217	.	+	0	Parent=hg002_chrY_paternal_154.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961319	8961464	.	+	2	Parent=hg002_chrY_paternal_154.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961560	8961622	.	+	0	Parent=hg002_chrY_paternal_154.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	8959761	8962557	.	+	.	ID=hg002_chrY_paternal_154.3;Parent=hg002_chrY_paternal_154;transcript_biotype=protein_coding;origin_ID=XM_011544005.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_154;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_154.3;transcript_name=hg002_chrY_paternal_154.3
HG002_chrY	Liftoff	exon	8959761	8960292	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8960900	8960977	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961106	8961217	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961326	8961464	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961571	8961652	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	8962347	8962557	.	+	.	Parent=hg002_chrY_paternal_154.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8959807	8960292	.	+	0	Parent=hg002_chrY_paternal_154.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8960900	8960977	.	+	0	Parent=hg002_chrY_paternal_154.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961106	8961217	.	+	0	Parent=hg002_chrY_paternal_154.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961326	8961464	.	+	2	Parent=hg002_chrY_paternal_154.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	8961571	8961622	.	+	1	Parent=hg002_chrY_paternal_154.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	8959761	8962557	.	+	.	ID=hg002_chrY_paternal_154.4;Parent=hg002_chrY_paternal_154;transcript_biotype=transcript;origin_ID=XR_949064.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_154;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_154.4;transcript_name=hg002_chrY_paternal_154.4
HG002_chrY	Liftoff	exon	8959761	8960292	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	8960900	8960977	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961106	8961217	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961326	8961464	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	8961560	8961652	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	8962347	8962557	.	+	.	Parent=hg002_chrY_paternal_154.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	8971875	8977486	.	-	.	ID=hg002_chrY_paternal_155;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=7;copy_num_ID=REF.chrY.159_7
HG002_chrY	Liftoff	transcript	8971875	8977486	.	-	.	ID=hg002_chrY_paternal_155.1;Parent=hg002_chrY_paternal_155;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=7;gene_id=hg002_chrY_paternal_155;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_155.1;transcript_name=hg002_chrY_paternal_155.1
HG002_chrY	Liftoff	exon	8971875	8971934	.	-	.	Parent=hg002_chrY_paternal_155.1;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	8975486	8975644	.	-	.	Parent=hg002_chrY_paternal_155.1;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	8977153	8977298	.	-	.	Parent=hg002_chrY_paternal_155.1;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	8977385	8977486	.	-	.	Parent=hg002_chrY_paternal_155.1;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	gene	8980100	8982896	.	+	.	ID=hg002_chrY_paternal_156;gene_name=TSPY8;gene_biotype=protein_coding;origin_ID=TSPY8;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=1;copy_num_ID=REF.chrY.149_1
HG002_chrY	Liftoff	transcript	8980100	8982896	.	+	.	ID=hg002_chrY_paternal_156.1;Parent=hg002_chrY_paternal_156;transcript_biotype=protein_coding;origin_ID=NM_001243721.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_156;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_156.1;transcript_name=hg002_chrY_paternal_156.1
HG002_chrY	Liftoff	exon	8980100	8980631	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981239	8981316	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981445	8981556	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981658	8981803	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981910	8981991	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	8982686	8982896	.	+	.	Parent=hg002_chrY_paternal_156.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8980146	8980631	.	+	0	Parent=hg002_chrY_paternal_156.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981239	8981316	.	+	0	Parent=hg002_chrY_paternal_156.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981445	8981556	.	+	0	Parent=hg002_chrY_paternal_156.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981658	8981803	.	+	2	Parent=hg002_chrY_paternal_156.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981910	8981991	.	+	0	Parent=hg002_chrY_paternal_156.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8982686	8982708	.	+	2	Parent=hg002_chrY_paternal_156.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	8980100	8982896	.	+	.	ID=hg002_chrY_paternal_156.2;Parent=hg002_chrY_paternal_156;transcript_biotype=protein_coding;origin_ID=XM_005272744.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_156;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_156.2;transcript_name=hg002_chrY_paternal_156.2
HG002_chrY	Liftoff	exon	8980100	8980631	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981239	8981316	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981445	8981556	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981658	8981803	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981899	8981991	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	8982686	8982896	.	+	.	Parent=hg002_chrY_paternal_156.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8980146	8980631	.	+	0	Parent=hg002_chrY_paternal_156.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981239	8981316	.	+	0	Parent=hg002_chrY_paternal_156.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981445	8981556	.	+	0	Parent=hg002_chrY_paternal_156.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981658	8981803	.	+	2	Parent=hg002_chrY_paternal_156.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981899	8981961	.	+	0	Parent=hg002_chrY_paternal_156.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	8980100	8982896	.	+	.	ID=hg002_chrY_paternal_156.3;Parent=hg002_chrY_paternal_156;transcript_biotype=protein_coding;origin_ID=XM_011544005.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_156;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_156.3;transcript_name=hg002_chrY_paternal_156.3
HG002_chrY	Liftoff	exon	8980100	8980631	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981239	8981316	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981445	8981556	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981665	8981803	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981910	8981991	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	8982686	8982896	.	+	.	Parent=hg002_chrY_paternal_156.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8980146	8980631	.	+	0	Parent=hg002_chrY_paternal_156.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981239	8981316	.	+	0	Parent=hg002_chrY_paternal_156.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981445	8981556	.	+	0	Parent=hg002_chrY_paternal_156.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981665	8981803	.	+	2	Parent=hg002_chrY_paternal_156.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	8981910	8981961	.	+	1	Parent=hg002_chrY_paternal_156.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	8980100	8982896	.	+	.	ID=hg002_chrY_paternal_156.4;Parent=hg002_chrY_paternal_156;transcript_biotype=transcript;origin_ID=XR_949064.3;extra_copy_number=1;gene_id=hg002_chrY_paternal_156;gene_name=TSPY8;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_156.4;transcript_name=hg002_chrY_paternal_156.4
HG002_chrY	Liftoff	exon	8980100	8980631	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981239	8981316	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981445	8981556	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981665	8981803	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	8981899	8981991	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	8982686	8982896	.	+	.	Parent=hg002_chrY_paternal_156.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	gene	8992164	8997842	.	-	.	ID=hg002_chrY_paternal_157;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=20;copy_num_ID=REF.chrY.160_20
HG002_chrY	Liftoff	transcript	8992164	8997842	.	-	.	ID=hg002_chrY_paternal_157.1;Parent=hg002_chrY_paternal_157;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=20;gene_id=hg002_chrY_paternal_157;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_157.1;transcript_name=hg002_chrY_paternal_157.1
HG002_chrY	Liftoff	exon	8992164	8992223	.	-	.	Parent=hg002_chrY_paternal_157.1;exon_number=4;extra_copy_number=20
HG002_chrY	Liftoff	exon	8995774	8995932	.	-	.	Parent=hg002_chrY_paternal_157.1;exon_number=3;extra_copy_number=20
HG002_chrY	Liftoff	exon	8997420	8997565	.	-	.	Parent=hg002_chrY_paternal_157.1;exon_number=2;extra_copy_number=20
HG002_chrY	Liftoff	exon	8997652	8997842	.	-	.	Parent=hg002_chrY_paternal_157.1;exon_number=1;extra_copy_number=20
HG002_chrY	Liftoff	gene	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.999;valid_ORFs=4;extra_copy_number=2;copy_num_ID=REF.chrY.156_2
HG002_chrY	Liftoff	transcript	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158.1;Parent=hg002_chrY_paternal_158;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_158.1;transcript_name=hg002_chrY_paternal_158.1
HG002_chrY	Liftoff	exon	9000367	9000898	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001506	9001583	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001712	9001823	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001925	9002070	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002166	9002258	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002953	9003163	.	+	.	Parent=hg002_chrY_paternal_158.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9000413	9000898	.	+	0	Parent=hg002_chrY_paternal_158.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001506	9001583	.	+	0	Parent=hg002_chrY_paternal_158.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001712	9001823	.	+	0	Parent=hg002_chrY_paternal_158.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001925	9002070	.	+	2	Parent=hg002_chrY_paternal_158.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002166	9002228	.	+	0	Parent=hg002_chrY_paternal_158.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158.2;Parent=hg002_chrY_paternal_158;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_158.2;transcript_name=hg002_chrY_paternal_158.2
HG002_chrY	Liftoff	exon	9000367	9000499	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9000761	9000898	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001506	9001583	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001712	9001823	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001925	9002070	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002177	9002258	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002953	9003163	.	+	.	Parent=hg002_chrY_paternal_158.2;exon_number=7;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9000413	9000499	.	+	0	Parent=hg002_chrY_paternal_158.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9000761	9000898	.	+	0	Parent=hg002_chrY_paternal_158.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001506	9001583	.	+	0	Parent=hg002_chrY_paternal_158.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001712	9001823	.	+	0	Parent=hg002_chrY_paternal_158.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001925	9002070	.	+	2	Parent=hg002_chrY_paternal_158.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002177	9002258	.	+	0	Parent=hg002_chrY_paternal_158.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002953	9002975	.	+	2	Parent=hg002_chrY_paternal_158.2;exon_number=7;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158.3;Parent=hg002_chrY_paternal_158;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_158.3;transcript_name=hg002_chrY_paternal_158.3
HG002_chrY	Liftoff	exon	9000367	9000898	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001506	9001583	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001712	9001823	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001925	9002070	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002177	9002258	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002953	9003163	.	+	.	Parent=hg002_chrY_paternal_158.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9000413	9000898	.	+	0	Parent=hg002_chrY_paternal_158.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001506	9001583	.	+	0	Parent=hg002_chrY_paternal_158.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001712	9001823	.	+	0	Parent=hg002_chrY_paternal_158.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001925	9002070	.	+	2	Parent=hg002_chrY_paternal_158.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002177	9002258	.	+	0	Parent=hg002_chrY_paternal_158.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002953	9002975	.	+	2	Parent=hg002_chrY_paternal_158.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158.4;Parent=hg002_chrY_paternal_158;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_158.4;transcript_name=hg002_chrY_paternal_158.4
HG002_chrY	Liftoff	exon	9000367	9000898	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001506	9001583	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001712	9001823	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001932	9002070	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002177	9002258	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002953	9003163	.	+	.	Parent=hg002_chrY_paternal_158.4;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9000413	9000898	.	+	0	Parent=hg002_chrY_paternal_158.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001506	9001583	.	+	0	Parent=hg002_chrY_paternal_158.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001712	9001823	.	+	0	Parent=hg002_chrY_paternal_158.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9001932	9002070	.	+	2	Parent=hg002_chrY_paternal_158.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9002177	9002228	.	+	1	Parent=hg002_chrY_paternal_158.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9000367	9003163	.	+	.	ID=hg002_chrY_paternal_158.5;Parent=hg002_chrY_paternal_158;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=2;gene_id=hg002_chrY_paternal_158;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_158.5;transcript_name=hg002_chrY_paternal_158.5
HG002_chrY	Liftoff	exon	9000367	9000898	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001506	9001583	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001712	9001823	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9001932	9002070	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002166	9002258	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9002953	9003163	.	+	.	Parent=hg002_chrY_paternal_158.5;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	gene	9012456	9018148	.	-	.	ID=hg002_chrY_paternal_159;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=21;copy_num_ID=REF.chrY.160_21
HG002_chrY	Liftoff	transcript	9012456	9018148	.	-	.	ID=hg002_chrY_paternal_159.1;Parent=hg002_chrY_paternal_159;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=21;gene_id=hg002_chrY_paternal_159;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_159.1;transcript_name=hg002_chrY_paternal_159.1
HG002_chrY	Liftoff	exon	9012456	9012515	.	-	.	Parent=hg002_chrY_paternal_159.1;exon_number=4;extra_copy_number=21
HG002_chrY	Liftoff	exon	9016065	9016223	.	-	.	Parent=hg002_chrY_paternal_159.1;exon_number=3;extra_copy_number=21
HG002_chrY	Liftoff	exon	9017726	9017871	.	-	.	Parent=hg002_chrY_paternal_159.1;exon_number=2;extra_copy_number=21
HG002_chrY	Liftoff	exon	9017958	9018148	.	-	.	Parent=hg002_chrY_paternal_159.1;exon_number=1;extra_copy_number=21
HG002_chrY	Liftoff	gene	9020672	9023486	.	+	.	ID=hg002_chrY_paternal_160;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.150_0
HG002_chrY	Liftoff	transcript	9020672	9023486	.	+	.	ID=hg002_chrY_paternal_160.1;Parent=hg002_chrY_paternal_160;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_160;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_160.1;transcript_name=hg002_chrY_paternal_160.1
HG002_chrY	Liftoff	exon	9020672	9021221	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9021829	9021906	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022035	9022146	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022248	9022393	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022500	9022581	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9023276	9023486	.	+	.	Parent=hg002_chrY_paternal_160.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9020718	9021221	.	+	0	Parent=hg002_chrY_paternal_160.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9021829	9021906	.	+	0	Parent=hg002_chrY_paternal_160.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022035	9022146	.	+	0	Parent=hg002_chrY_paternal_160.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022248	9022393	.	+	2	Parent=hg002_chrY_paternal_160.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022500	9022581	.	+	0	Parent=hg002_chrY_paternal_160.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9023276	9023298	.	+	2	Parent=hg002_chrY_paternal_160.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9020672	9023486	.	+	.	ID=hg002_chrY_paternal_160.2;Parent=hg002_chrY_paternal_160;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_160;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_160.2;transcript_name=hg002_chrY_paternal_160.2
HG002_chrY	Liftoff	exon	9020672	9021221	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9021829	9021906	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022035	9022146	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022248	9022393	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022489	9022581	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9023276	9023486	.	+	.	Parent=hg002_chrY_paternal_160.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9020718	9021221	.	+	0	Parent=hg002_chrY_paternal_160.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9021829	9021906	.	+	0	Parent=hg002_chrY_paternal_160.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022035	9022146	.	+	0	Parent=hg002_chrY_paternal_160.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022248	9022393	.	+	2	Parent=hg002_chrY_paternal_160.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022489	9022551	.	+	0	Parent=hg002_chrY_paternal_160.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9020672	9023486	.	+	.	ID=hg002_chrY_paternal_160.3;Parent=hg002_chrY_paternal_160;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_160;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_160.3;transcript_name=hg002_chrY_paternal_160.3
HG002_chrY	Liftoff	exon	9020672	9021221	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9021829	9021906	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022035	9022146	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022255	9022393	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022500	9022581	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9023276	9023486	.	+	.	Parent=hg002_chrY_paternal_160.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9020718	9021221	.	+	0	Parent=hg002_chrY_paternal_160.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9021829	9021906	.	+	0	Parent=hg002_chrY_paternal_160.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022035	9022146	.	+	0	Parent=hg002_chrY_paternal_160.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022255	9022393	.	+	2	Parent=hg002_chrY_paternal_160.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9022500	9022551	.	+	1	Parent=hg002_chrY_paternal_160.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9020672	9023486	.	+	.	ID=hg002_chrY_paternal_160.4;Parent=hg002_chrY_paternal_160;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_160;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_160.4;transcript_name=hg002_chrY_paternal_160.4
HG002_chrY	Liftoff	exon	9020672	9021221	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9021829	9021906	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022035	9022146	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022255	9022393	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9022489	9022581	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9023276	9023486	.	+	.	Parent=hg002_chrY_paternal_160.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	9032791	9038391	.	-	.	ID=hg002_chrY_paternal_161;gene_name=FAM197Y8;gene_biotype=lncRNA;origin_ID=FAM197Y8;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.151_0
HG002_chrY	Liftoff	transcript	9032791	9038391	.	-	.	ID=hg002_chrY_paternal_161.1;Parent=hg002_chrY_paternal_161;transcript_biotype=lnc_RNA;origin_ID=NR_145468.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_161;gene_name=FAM197Y8;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_161.1;transcript_name=hg002_chrY_paternal_161.1
HG002_chrY	Liftoff	exon	9032791	9032850	.	-	.	Parent=hg002_chrY_paternal_161.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9036401	9036559	.	-	.	Parent=hg002_chrY_paternal_161.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9038058	9038203	.	-	.	Parent=hg002_chrY_paternal_161.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9038290	9038391	.	-	.	Parent=hg002_chrY_paternal_161.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9041004	9043818	.	+	.	ID=hg002_chrY_paternal_162;gene_name=TSPY9;gene_biotype=protein_coding;origin_ID=TSPY9;coverage=1.0;sequence_ID=0.998;valid_ORFs=2;extra_copy_number=4;copy_num_ID=REF.chrY.158_4
HG002_chrY	Liftoff	transcript	9041004	9043818	.	+	.	ID=hg002_chrY_paternal_162.1;Parent=hg002_chrY_paternal_162;transcript_biotype=protein_coding;origin_ID=NM_001396063.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_162;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_162.1;transcript_name=hg002_chrY_paternal_162.1
HG002_chrY	Liftoff	exon	9041004	9041553	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042161	9042238	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042367	9042478	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042580	9042725	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042832	9042913	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9043608	9043818	.	+	.	Parent=hg002_chrY_paternal_162.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9041050	9041553	.	+	0	Parent=hg002_chrY_paternal_162.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042161	9042238	.	+	0	Parent=hg002_chrY_paternal_162.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042367	9042478	.	+	0	Parent=hg002_chrY_paternal_162.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042580	9042725	.	+	2	Parent=hg002_chrY_paternal_162.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042832	9042913	.	+	0	Parent=hg002_chrY_paternal_162.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9043608	9043630	.	+	2	Parent=hg002_chrY_paternal_162.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9041004	9043818	.	+	.	ID=hg002_chrY_paternal_162.2;Parent=hg002_chrY_paternal_162;transcript_biotype=protein_coding;origin_ID=XM_047442744.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_162;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_162.2;transcript_name=hg002_chrY_paternal_162.2
HG002_chrY	Liftoff	exon	9041004	9041553	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042161	9042238	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042367	9042478	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042580	9042725	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9042821	9042913	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9043608	9043818	.	+	.	Parent=hg002_chrY_paternal_162.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9041050	9041553	.	+	0	Parent=hg002_chrY_paternal_162.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042161	9042238	.	+	0	Parent=hg002_chrY_paternal_162.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042367	9042478	.	+	0	Parent=hg002_chrY_paternal_162.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042580	9042725	.	+	2	Parent=hg002_chrY_paternal_162.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9042821	9042883	.	+	0	Parent=hg002_chrY_paternal_162.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	gene	9053083	9058771	.	-	.	ID=hg002_chrY_paternal_163;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=12;copy_num_ID=REF.chrY.160_12
HG002_chrY	Liftoff	transcript	9053083	9058771	.	-	.	ID=hg002_chrY_paternal_163.1;Parent=hg002_chrY_paternal_163;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=12;gene_id=hg002_chrY_paternal_163;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_163.1;transcript_name=hg002_chrY_paternal_163.1
HG002_chrY	Liftoff	exon	9053083	9053142	.	-	.	Parent=hg002_chrY_paternal_163.1;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	9056692	9056850	.	-	.	Parent=hg002_chrY_paternal_163.1;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	9058349	9058494	.	-	.	Parent=hg002_chrY_paternal_163.1;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	9058581	9058771	.	-	.	Parent=hg002_chrY_paternal_163.1;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	gene	9061295	9064091	.	+	.	ID=hg002_chrY_paternal_164;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=3;copy_num_ID=REF.chrY.152_3
HG002_chrY	Liftoff	transcript	9061295	9064091	.	+	.	ID=hg002_chrY_paternal_164.1;Parent=hg002_chrY_paternal_164;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_164;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_164.1;transcript_name=hg002_chrY_paternal_164.1
HG002_chrY	Liftoff	exon	9061295	9061826	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062434	9062511	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062640	9062751	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062853	9062998	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063105	9063186	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063881	9064091	.	+	.	Parent=hg002_chrY_paternal_164.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9061341	9061826	.	+	0	Parent=hg002_chrY_paternal_164.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062434	9062511	.	+	0	Parent=hg002_chrY_paternal_164.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062640	9062751	.	+	0	Parent=hg002_chrY_paternal_164.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062853	9062998	.	+	2	Parent=hg002_chrY_paternal_164.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9063105	9063186	.	+	0	Parent=hg002_chrY_paternal_164.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9063881	9063903	.	+	2	Parent=hg002_chrY_paternal_164.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9061295	9064091	.	+	.	ID=hg002_chrY_paternal_164.2;Parent=hg002_chrY_paternal_164;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_164;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_164.2;transcript_name=hg002_chrY_paternal_164.2
HG002_chrY	Liftoff	exon	9061295	9061826	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062434	9062511	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062640	9062751	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062853	9062998	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063094	9063186	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063881	9064091	.	+	.	Parent=hg002_chrY_paternal_164.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9061341	9061826	.	+	0	Parent=hg002_chrY_paternal_164.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062434	9062511	.	+	0	Parent=hg002_chrY_paternal_164.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062640	9062751	.	+	0	Parent=hg002_chrY_paternal_164.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062853	9062998	.	+	2	Parent=hg002_chrY_paternal_164.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9063094	9063156	.	+	0	Parent=hg002_chrY_paternal_164.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9061295	9064091	.	+	.	ID=hg002_chrY_paternal_164.3;Parent=hg002_chrY_paternal_164;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_164;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_164.3;transcript_name=hg002_chrY_paternal_164.3
HG002_chrY	Liftoff	exon	9061295	9061826	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062434	9062511	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062640	9062751	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062860	9062998	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063105	9063186	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063881	9064091	.	+	.	Parent=hg002_chrY_paternal_164.3;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9061341	9061826	.	+	0	Parent=hg002_chrY_paternal_164.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062434	9062511	.	+	0	Parent=hg002_chrY_paternal_164.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062640	9062751	.	+	0	Parent=hg002_chrY_paternal_164.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9062860	9062998	.	+	2	Parent=hg002_chrY_paternal_164.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9063105	9063156	.	+	1	Parent=hg002_chrY_paternal_164.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9061295	9064091	.	+	.	ID=hg002_chrY_paternal_164.4;Parent=hg002_chrY_paternal_164;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=3;gene_id=hg002_chrY_paternal_164;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_164.4;transcript_name=hg002_chrY_paternal_164.4
HG002_chrY	Liftoff	exon	9061295	9061826	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062434	9062511	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062640	9062751	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9062860	9062998	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063094	9063186	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9063881	9064091	.	+	.	Parent=hg002_chrY_paternal_164.4;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	gene	9073345	9079033	.	-	.	ID=hg002_chrY_paternal_165;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=11;copy_num_ID=REF.chrY.160_11
HG002_chrY	Liftoff	transcript	9073345	9079033	.	-	.	ID=hg002_chrY_paternal_165.1;Parent=hg002_chrY_paternal_165;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=11;gene_id=hg002_chrY_paternal_165;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_165.1;transcript_name=hg002_chrY_paternal_165.1
HG002_chrY	Liftoff	exon	9073345	9073404	.	-	.	Parent=hg002_chrY_paternal_165.1;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9076954	9077112	.	-	.	Parent=hg002_chrY_paternal_165.1;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9078611	9078756	.	-	.	Parent=hg002_chrY_paternal_165.1;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9078843	9079033	.	-	.	Parent=hg002_chrY_paternal_165.1;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	gene	9081557	9084353	.	+	.	ID=hg002_chrY_paternal_166;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=5;copy_num_ID=REF.chrY.162_5
HG002_chrY	Liftoff	transcript	9081557	9084353	.	+	.	ID=hg002_chrY_paternal_166.1;Parent=hg002_chrY_paternal_166;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=5;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_166;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_166.1;transcript_name=hg002_chrY_paternal_166.1
HG002_chrY	Liftoff	exon	9081557	9082088	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082696	9082773	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082902	9083013	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083115	9083260	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083367	9083448	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9084143	9084353	.	+	.	Parent=hg002_chrY_paternal_166.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9081603	9082088	.	+	0	Parent=hg002_chrY_paternal_166.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082696	9082773	.	+	0	Parent=hg002_chrY_paternal_166.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082902	9083013	.	+	0	Parent=hg002_chrY_paternal_166.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083115	9083260	.	+	2	Parent=hg002_chrY_paternal_166.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083367	9083448	.	+	0	Parent=hg002_chrY_paternal_166.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9084143	9084165	.	+	2	Parent=hg002_chrY_paternal_166.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9081557	9084353	.	+	.	ID=hg002_chrY_paternal_166.2;Parent=hg002_chrY_paternal_166;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_166;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_166.2;transcript_name=hg002_chrY_paternal_166.2
HG002_chrY	Liftoff	exon	9081557	9082088	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082696	9082773	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082902	9083013	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083115	9083260	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083356	9083448	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9084143	9084353	.	+	.	Parent=hg002_chrY_paternal_166.2;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9081603	9082088	.	+	0	Parent=hg002_chrY_paternal_166.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082696	9082773	.	+	0	Parent=hg002_chrY_paternal_166.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082902	9083013	.	+	0	Parent=hg002_chrY_paternal_166.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083115	9083260	.	+	2	Parent=hg002_chrY_paternal_166.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083356	9083418	.	+	0	Parent=hg002_chrY_paternal_166.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9081557	9084353	.	+	.	ID=hg002_chrY_paternal_166.3;Parent=hg002_chrY_paternal_166;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_166;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_166.3;transcript_name=hg002_chrY_paternal_166.3
HG002_chrY	Liftoff	exon	9081557	9082088	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082696	9082773	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082902	9083013	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083122	9083260	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083367	9083448	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9084143	9084353	.	+	.	Parent=hg002_chrY_paternal_166.3;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9081603	9082088	.	+	0	Parent=hg002_chrY_paternal_166.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082696	9082773	.	+	0	Parent=hg002_chrY_paternal_166.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9082902	9083013	.	+	0	Parent=hg002_chrY_paternal_166.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083122	9083260	.	+	2	Parent=hg002_chrY_paternal_166.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9083367	9083418	.	+	1	Parent=hg002_chrY_paternal_166.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9081557	9084353	.	+	.	ID=hg002_chrY_paternal_166.4;Parent=hg002_chrY_paternal_166;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=5;gene_id=hg002_chrY_paternal_166;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_166.4;transcript_name=hg002_chrY_paternal_166.4
HG002_chrY	Liftoff	exon	9081557	9082088	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082696	9082773	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9082902	9083013	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083122	9083260	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9083356	9083448	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9084143	9084353	.	+	.	Parent=hg002_chrY_paternal_166.4;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	gene	9093623	9099224	.	-	.	ID=hg002_chrY_paternal_167;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=5;copy_num_ID=REF.chrY.159_5
HG002_chrY	Liftoff	transcript	9093623	9099224	.	-	.	ID=hg002_chrY_paternal_167.1;Parent=hg002_chrY_paternal_167;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=5;gene_id=hg002_chrY_paternal_167;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_167.1;transcript_name=hg002_chrY_paternal_167.1
HG002_chrY	Liftoff	exon	9093623	9093682	.	-	.	Parent=hg002_chrY_paternal_167.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9097234	9097392	.	-	.	Parent=hg002_chrY_paternal_167.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9098891	9099036	.	-	.	Parent=hg002_chrY_paternal_167.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9099123	9099224	.	-	.	Parent=hg002_chrY_paternal_167.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	gene	9101837	9104633	.	+	.	ID=hg002_chrY_paternal_168;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=1;copy_num_ID=REF.chrY.162_1
HG002_chrY	Liftoff	transcript	9101837	9104633	.	+	.	ID=hg002_chrY_paternal_168.1;Parent=hg002_chrY_paternal_168;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_168;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_168.1;transcript_name=hg002_chrY_paternal_168.1
HG002_chrY	Liftoff	exon	9101837	9102368	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9102976	9103053	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103182	9103293	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103395	9103540	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103647	9103728	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9104423	9104633	.	+	.	Parent=hg002_chrY_paternal_168.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9101883	9102368	.	+	0	Parent=hg002_chrY_paternal_168.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9102976	9103053	.	+	0	Parent=hg002_chrY_paternal_168.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103182	9103293	.	+	0	Parent=hg002_chrY_paternal_168.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103395	9103540	.	+	2	Parent=hg002_chrY_paternal_168.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103647	9103728	.	+	0	Parent=hg002_chrY_paternal_168.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9104423	9104445	.	+	2	Parent=hg002_chrY_paternal_168.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9101837	9104633	.	+	.	ID=hg002_chrY_paternal_168.2;Parent=hg002_chrY_paternal_168;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_168;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_168.2;transcript_name=hg002_chrY_paternal_168.2
HG002_chrY	Liftoff	exon	9101837	9102368	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9102976	9103053	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103182	9103293	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103395	9103540	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103636	9103728	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9104423	9104633	.	+	.	Parent=hg002_chrY_paternal_168.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9101883	9102368	.	+	0	Parent=hg002_chrY_paternal_168.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9102976	9103053	.	+	0	Parent=hg002_chrY_paternal_168.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103182	9103293	.	+	0	Parent=hg002_chrY_paternal_168.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103395	9103540	.	+	2	Parent=hg002_chrY_paternal_168.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103636	9103698	.	+	0	Parent=hg002_chrY_paternal_168.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9101837	9104633	.	+	.	ID=hg002_chrY_paternal_168.3;Parent=hg002_chrY_paternal_168;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_168;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_168.3;transcript_name=hg002_chrY_paternal_168.3
HG002_chrY	Liftoff	exon	9101837	9102368	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9102976	9103053	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103182	9103293	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103402	9103540	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103647	9103728	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9104423	9104633	.	+	.	Parent=hg002_chrY_paternal_168.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9101883	9102368	.	+	0	Parent=hg002_chrY_paternal_168.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9102976	9103053	.	+	0	Parent=hg002_chrY_paternal_168.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103182	9103293	.	+	0	Parent=hg002_chrY_paternal_168.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103402	9103540	.	+	2	Parent=hg002_chrY_paternal_168.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9103647	9103698	.	+	1	Parent=hg002_chrY_paternal_168.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9101837	9104633	.	+	.	ID=hg002_chrY_paternal_168.4;Parent=hg002_chrY_paternal_168;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_168;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_168.4;transcript_name=hg002_chrY_paternal_168.4
HG002_chrY	Liftoff	exon	9101837	9102368	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9102976	9103053	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103182	9103293	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103402	9103540	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9103636	9103728	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9104423	9104633	.	+	.	Parent=hg002_chrY_paternal_168.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	gene	9113905	9119505	.	-	.	ID=hg002_chrY_paternal_169;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=0.997;extra_copy_number=8;copy_num_ID=REF.chrY.159_8
HG002_chrY	Liftoff	transcript	9113905	9119505	.	-	.	ID=hg002_chrY_paternal_169.1;Parent=hg002_chrY_paternal_169;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=8;gene_id=hg002_chrY_paternal_169;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_169.1;transcript_name=hg002_chrY_paternal_169.1
HG002_chrY	Liftoff	exon	9113905	9113964	.	-	.	Parent=hg002_chrY_paternal_169.1;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9117513	9117671	.	-	.	Parent=hg002_chrY_paternal_169.1;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9119172	9119317	.	-	.	Parent=hg002_chrY_paternal_169.1;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9119404	9119505	.	-	.	Parent=hg002_chrY_paternal_169.1;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	gene	9122114	9124910	.	+	.	ID=hg002_chrY_paternal_170;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=4;copy_num_ID=REF.chrY.162_4
HG002_chrY	Liftoff	transcript	9122114	9124910	.	+	.	ID=hg002_chrY_paternal_170.1;Parent=hg002_chrY_paternal_170;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=4;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_170;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_170.1;transcript_name=hg002_chrY_paternal_170.1
HG002_chrY	Liftoff	exon	9122114	9122645	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123253	9123330	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123459	9123570	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123672	9123817	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123924	9124005	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9124700	9124910	.	+	.	Parent=hg002_chrY_paternal_170.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9122160	9122645	.	+	0	Parent=hg002_chrY_paternal_170.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123253	9123330	.	+	0	Parent=hg002_chrY_paternal_170.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123459	9123570	.	+	0	Parent=hg002_chrY_paternal_170.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123672	9123817	.	+	2	Parent=hg002_chrY_paternal_170.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123924	9124005	.	+	0	Parent=hg002_chrY_paternal_170.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9124700	9124722	.	+	2	Parent=hg002_chrY_paternal_170.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9122114	9124910	.	+	.	ID=hg002_chrY_paternal_170.2;Parent=hg002_chrY_paternal_170;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_170;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_170.2;transcript_name=hg002_chrY_paternal_170.2
HG002_chrY	Liftoff	exon	9122114	9122645	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123253	9123330	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123459	9123570	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123672	9123817	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123913	9124005	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9124700	9124910	.	+	.	Parent=hg002_chrY_paternal_170.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9122160	9122645	.	+	0	Parent=hg002_chrY_paternal_170.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123253	9123330	.	+	0	Parent=hg002_chrY_paternal_170.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123459	9123570	.	+	0	Parent=hg002_chrY_paternal_170.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123672	9123817	.	+	2	Parent=hg002_chrY_paternal_170.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123913	9123975	.	+	0	Parent=hg002_chrY_paternal_170.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9122114	9124910	.	+	.	ID=hg002_chrY_paternal_170.3;Parent=hg002_chrY_paternal_170;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_170;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_170.3;transcript_name=hg002_chrY_paternal_170.3
HG002_chrY	Liftoff	exon	9122114	9122645	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123253	9123330	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123459	9123570	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123679	9123817	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123924	9124005	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9124700	9124910	.	+	.	Parent=hg002_chrY_paternal_170.3;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9122160	9122645	.	+	0	Parent=hg002_chrY_paternal_170.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123253	9123330	.	+	0	Parent=hg002_chrY_paternal_170.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123459	9123570	.	+	0	Parent=hg002_chrY_paternal_170.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123679	9123817	.	+	2	Parent=hg002_chrY_paternal_170.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9123924	9123975	.	+	1	Parent=hg002_chrY_paternal_170.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9122114	9124910	.	+	.	ID=hg002_chrY_paternal_170.4;Parent=hg002_chrY_paternal_170;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=4;gene_id=hg002_chrY_paternal_170;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_170.4;transcript_name=hg002_chrY_paternal_170.4
HG002_chrY	Liftoff	exon	9122114	9122645	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123253	9123330	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123459	9123570	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123679	9123817	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9123913	9124005	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9124700	9124910	.	+	.	Parent=hg002_chrY_paternal_170.4;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	gene	9134180	9139873	.	-	.	ID=hg002_chrY_paternal_171;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=2;copy_num_ID=REF.chrY.160_2
HG002_chrY	Liftoff	transcript	9134180	9139873	.	-	.	ID=hg002_chrY_paternal_171.1;Parent=hg002_chrY_paternal_171;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=2;gene_id=hg002_chrY_paternal_171;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_171.1;transcript_name=hg002_chrY_paternal_171.1
HG002_chrY	Liftoff	exon	9134180	9134239	.	-	.	Parent=hg002_chrY_paternal_171.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9137790	9137948	.	-	.	Parent=hg002_chrY_paternal_171.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9139451	9139596	.	-	.	Parent=hg002_chrY_paternal_171.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9139683	9139873	.	-	.	Parent=hg002_chrY_paternal_171.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	gene	9142397	9145193	.	+	.	ID=hg002_chrY_paternal_172;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=8;copy_num_ID=REF.chrY.162_8
HG002_chrY	Liftoff	transcript	9142397	9145193	.	+	.	ID=hg002_chrY_paternal_172.1;Parent=hg002_chrY_paternal_172;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=8;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_172;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_172.1;transcript_name=hg002_chrY_paternal_172.1
HG002_chrY	Liftoff	exon	9142397	9142928	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143536	9143613	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143742	9143853	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143955	9144100	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144207	9144288	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144983	9145193	.	+	.	Parent=hg002_chrY_paternal_172.1;exon_number=6;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9142443	9142928	.	+	0	Parent=hg002_chrY_paternal_172.1;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143536	9143613	.	+	0	Parent=hg002_chrY_paternal_172.1;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143742	9143853	.	+	0	Parent=hg002_chrY_paternal_172.1;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143955	9144100	.	+	2	Parent=hg002_chrY_paternal_172.1;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9144207	9144288	.	+	0	Parent=hg002_chrY_paternal_172.1;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9144983	9145005	.	+	2	Parent=hg002_chrY_paternal_172.1;exon_number=6;extra_copy_number=8
HG002_chrY	Liftoff	transcript	9142397	9145193	.	+	.	ID=hg002_chrY_paternal_172.2;Parent=hg002_chrY_paternal_172;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=8;manual=False;gene_id=hg002_chrY_paternal_172;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_172.2;transcript_name=hg002_chrY_paternal_172.2
HG002_chrY	Liftoff	exon	9142397	9142928	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143536	9143613	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143742	9143853	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143955	9144100	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144196	9144288	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144983	9145193	.	+	.	Parent=hg002_chrY_paternal_172.2;exon_number=6;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9142443	9142928	.	+	0	Parent=hg002_chrY_paternal_172.2;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143536	9143613	.	+	0	Parent=hg002_chrY_paternal_172.2;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143742	9143853	.	+	0	Parent=hg002_chrY_paternal_172.2;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143955	9144100	.	+	2	Parent=hg002_chrY_paternal_172.2;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9144196	9144258	.	+	0	Parent=hg002_chrY_paternal_172.2;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	transcript	9142397	9145193	.	+	.	ID=hg002_chrY_paternal_172.3;Parent=hg002_chrY_paternal_172;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=8;manual=False;gene_id=hg002_chrY_paternal_172;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_172.3;transcript_name=hg002_chrY_paternal_172.3
HG002_chrY	Liftoff	exon	9142397	9142928	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143536	9143613	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143742	9143853	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143962	9144100	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144207	9144288	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144983	9145193	.	+	.	Parent=hg002_chrY_paternal_172.3;exon_number=6;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9142443	9142928	.	+	0	Parent=hg002_chrY_paternal_172.3;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143536	9143613	.	+	0	Parent=hg002_chrY_paternal_172.3;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143742	9143853	.	+	0	Parent=hg002_chrY_paternal_172.3;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9143962	9144100	.	+	2	Parent=hg002_chrY_paternal_172.3;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	CDS	9144207	9144258	.	+	1	Parent=hg002_chrY_paternal_172.3;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	transcript	9142397	9145193	.	+	.	ID=hg002_chrY_paternal_172.4;Parent=hg002_chrY_paternal_172;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=8;gene_id=hg002_chrY_paternal_172;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_172.4;transcript_name=hg002_chrY_paternal_172.4
HG002_chrY	Liftoff	exon	9142397	9142928	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143536	9143613	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143742	9143853	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9143962	9144100	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144196	9144288	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=5;extra_copy_number=8
HG002_chrY	Liftoff	exon	9144983	9145193	.	+	.	Parent=hg002_chrY_paternal_172.4;exon_number=6;extra_copy_number=8
HG002_chrY	Liftoff	gene	9154454	9160134	.	-	.	ID=hg002_chrY_paternal_173;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=9;copy_num_ID=REF.chrY.160_9
HG002_chrY	Liftoff	transcript	9154454	9160134	.	-	.	ID=hg002_chrY_paternal_173.1;Parent=hg002_chrY_paternal_173;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=9;gene_id=hg002_chrY_paternal_173;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_173.1;transcript_name=hg002_chrY_paternal_173.1
HG002_chrY	Liftoff	exon	9154454	9154513	.	-	.	Parent=hg002_chrY_paternal_173.1;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9158063	9158221	.	-	.	Parent=hg002_chrY_paternal_173.1;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9159712	9159857	.	-	.	Parent=hg002_chrY_paternal_173.1;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9159944	9160134	.	-	.	Parent=hg002_chrY_paternal_173.1;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	gene	9162658	9165472	.	+	.	ID=hg002_chrY_paternal_174;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=6;copy_num_ID=REF.chrY.150_6
HG002_chrY	Liftoff	transcript	9162658	9165472	.	+	.	ID=hg002_chrY_paternal_174.1;Parent=hg002_chrY_paternal_174;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_174;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_174.1;transcript_name=hg002_chrY_paternal_174.1
HG002_chrY	Liftoff	exon	9162658	9163207	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9163815	9163892	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164021	9164132	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164234	9164379	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164486	9164567	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9165262	9165472	.	+	.	Parent=hg002_chrY_paternal_174.1;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9162704	9163207	.	+	0	Parent=hg002_chrY_paternal_174.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9163815	9163892	.	+	0	Parent=hg002_chrY_paternal_174.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164021	9164132	.	+	0	Parent=hg002_chrY_paternal_174.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164234	9164379	.	+	2	Parent=hg002_chrY_paternal_174.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164486	9164567	.	+	0	Parent=hg002_chrY_paternal_174.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9165262	9165284	.	+	2	Parent=hg002_chrY_paternal_174.1;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9162658	9165472	.	+	.	ID=hg002_chrY_paternal_174.2;Parent=hg002_chrY_paternal_174;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_174;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_174.2;transcript_name=hg002_chrY_paternal_174.2
HG002_chrY	Liftoff	exon	9162658	9163207	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9163815	9163892	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164021	9164132	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164234	9164379	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164475	9164567	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9165262	9165472	.	+	.	Parent=hg002_chrY_paternal_174.2;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9162704	9163207	.	+	0	Parent=hg002_chrY_paternal_174.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9163815	9163892	.	+	0	Parent=hg002_chrY_paternal_174.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164021	9164132	.	+	0	Parent=hg002_chrY_paternal_174.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164234	9164379	.	+	2	Parent=hg002_chrY_paternal_174.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164475	9164537	.	+	0	Parent=hg002_chrY_paternal_174.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9162658	9165472	.	+	.	ID=hg002_chrY_paternal_174.3;Parent=hg002_chrY_paternal_174;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_174;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_174.3;transcript_name=hg002_chrY_paternal_174.3
HG002_chrY	Liftoff	exon	9162658	9163207	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9163815	9163892	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164021	9164132	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164241	9164379	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164486	9164567	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9165262	9165472	.	+	.	Parent=hg002_chrY_paternal_174.3;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9162704	9163207	.	+	0	Parent=hg002_chrY_paternal_174.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9163815	9163892	.	+	0	Parent=hg002_chrY_paternal_174.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164021	9164132	.	+	0	Parent=hg002_chrY_paternal_174.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164241	9164379	.	+	2	Parent=hg002_chrY_paternal_174.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9164486	9164537	.	+	1	Parent=hg002_chrY_paternal_174.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9162658	9165472	.	+	.	ID=hg002_chrY_paternal_174.4;Parent=hg002_chrY_paternal_174;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=6;gene_id=hg002_chrY_paternal_174;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_174.4;transcript_name=hg002_chrY_paternal_174.4
HG002_chrY	Liftoff	exon	9162658	9163207	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9163815	9163892	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164021	9164132	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164241	9164379	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9164475	9164567	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9165262	9165472	.	+	.	Parent=hg002_chrY_paternal_174.4;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	gene	9174763	9180450	.	-	.	ID=hg002_chrY_paternal_175;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=16;copy_num_ID=REF.chrY.160_16
HG002_chrY	Liftoff	transcript	9174763	9180450	.	-	.	ID=hg002_chrY_paternal_175.1;Parent=hg002_chrY_paternal_175;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=16;gene_id=hg002_chrY_paternal_175;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_175.1;transcript_name=hg002_chrY_paternal_175.1
HG002_chrY	Liftoff	exon	9174763	9174822	.	-	.	Parent=hg002_chrY_paternal_175.1;exon_number=4;extra_copy_number=16
HG002_chrY	Liftoff	exon	9178372	9178530	.	-	.	Parent=hg002_chrY_paternal_175.1;exon_number=3;extra_copy_number=16
HG002_chrY	Liftoff	exon	9180028	9180173	.	-	.	Parent=hg002_chrY_paternal_175.1;exon_number=2;extra_copy_number=16
HG002_chrY	Liftoff	exon	9180260	9180450	.	-	.	Parent=hg002_chrY_paternal_175.1;exon_number=1;extra_copy_number=16
HG002_chrY	Liftoff	gene	9182974	9185770	.	+	.	ID=hg002_chrY_paternal_176;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=1;copy_num_ID=REF.chrY.152_1
HG002_chrY	Liftoff	transcript	9182974	9185770	.	+	.	ID=hg002_chrY_paternal_176.1;Parent=hg002_chrY_paternal_176;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_176;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_176.1;transcript_name=hg002_chrY_paternal_176.1
HG002_chrY	Liftoff	exon	9182974	9183505	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184113	9184190	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184319	9184430	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184532	9184677	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184784	9184865	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9185560	9185770	.	+	.	Parent=hg002_chrY_paternal_176.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9183020	9183505	.	+	0	Parent=hg002_chrY_paternal_176.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184113	9184190	.	+	0	Parent=hg002_chrY_paternal_176.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184319	9184430	.	+	0	Parent=hg002_chrY_paternal_176.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184532	9184677	.	+	2	Parent=hg002_chrY_paternal_176.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184784	9184865	.	+	0	Parent=hg002_chrY_paternal_176.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9185560	9185582	.	+	2	Parent=hg002_chrY_paternal_176.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9182974	9185770	.	+	.	ID=hg002_chrY_paternal_176.2;Parent=hg002_chrY_paternal_176;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_176;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_176.2;transcript_name=hg002_chrY_paternal_176.2
HG002_chrY	Liftoff	exon	9182974	9183505	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184113	9184190	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184319	9184430	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184532	9184677	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184773	9184865	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9185560	9185770	.	+	.	Parent=hg002_chrY_paternal_176.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9183020	9183505	.	+	0	Parent=hg002_chrY_paternal_176.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184113	9184190	.	+	0	Parent=hg002_chrY_paternal_176.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184319	9184430	.	+	0	Parent=hg002_chrY_paternal_176.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184532	9184677	.	+	2	Parent=hg002_chrY_paternal_176.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184773	9184835	.	+	0	Parent=hg002_chrY_paternal_176.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9182974	9185770	.	+	.	ID=hg002_chrY_paternal_176.3;Parent=hg002_chrY_paternal_176;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_176;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_176.3;transcript_name=hg002_chrY_paternal_176.3
HG002_chrY	Liftoff	exon	9182974	9183505	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184113	9184190	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184319	9184430	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184539	9184677	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184784	9184865	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9185560	9185770	.	+	.	Parent=hg002_chrY_paternal_176.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9183020	9183505	.	+	0	Parent=hg002_chrY_paternal_176.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184113	9184190	.	+	0	Parent=hg002_chrY_paternal_176.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184319	9184430	.	+	0	Parent=hg002_chrY_paternal_176.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184539	9184677	.	+	2	Parent=hg002_chrY_paternal_176.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9184784	9184835	.	+	1	Parent=hg002_chrY_paternal_176.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9182974	9185770	.	+	.	ID=hg002_chrY_paternal_176.4;Parent=hg002_chrY_paternal_176;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=1;gene_id=hg002_chrY_paternal_176;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_176.4;transcript_name=hg002_chrY_paternal_176.4
HG002_chrY	Liftoff	exon	9182974	9183505	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184113	9184190	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184319	9184430	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184539	9184677	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9184773	9184865	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9185560	9185770	.	+	.	Parent=hg002_chrY_paternal_176.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	gene	9195034	9200639	.	-	.	ID=hg002_chrY_paternal_177;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=3;copy_num_ID=REF.chrY.159_3
HG002_chrY	Liftoff	transcript	9195034	9200639	.	-	.	ID=hg002_chrY_paternal_177.1;Parent=hg002_chrY_paternal_177;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=3;gene_id=hg002_chrY_paternal_177;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_177.1;transcript_name=hg002_chrY_paternal_177.1
HG002_chrY	Liftoff	exon	9195034	9195093	.	-	.	Parent=hg002_chrY_paternal_177.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9198645	9198803	.	-	.	Parent=hg002_chrY_paternal_177.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9200306	9200451	.	-	.	Parent=hg002_chrY_paternal_177.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9200538	9200639	.	-	.	Parent=hg002_chrY_paternal_177.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	gene	9203252	9206048	.	+	.	ID=hg002_chrY_paternal_178;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=2;copy_num_ID=REF.chrY.162_2
HG002_chrY	Liftoff	transcript	9203252	9206048	.	+	.	ID=hg002_chrY_paternal_178.1;Parent=hg002_chrY_paternal_178;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_178;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_178.1;transcript_name=hg002_chrY_paternal_178.1
HG002_chrY	Liftoff	exon	9203252	9203783	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204391	9204468	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204597	9204708	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204810	9204955	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205062	9205143	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205838	9206048	.	+	.	Parent=hg002_chrY_paternal_178.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9203298	9203783	.	+	0	Parent=hg002_chrY_paternal_178.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204391	9204468	.	+	0	Parent=hg002_chrY_paternal_178.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204597	9204708	.	+	0	Parent=hg002_chrY_paternal_178.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204810	9204955	.	+	2	Parent=hg002_chrY_paternal_178.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9205062	9205143	.	+	0	Parent=hg002_chrY_paternal_178.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9205838	9205860	.	+	2	Parent=hg002_chrY_paternal_178.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9203252	9206048	.	+	.	ID=hg002_chrY_paternal_178.2;Parent=hg002_chrY_paternal_178;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_178;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_178.2;transcript_name=hg002_chrY_paternal_178.2
HG002_chrY	Liftoff	exon	9203252	9203783	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204391	9204468	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204597	9204708	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204810	9204955	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205051	9205143	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205838	9206048	.	+	.	Parent=hg002_chrY_paternal_178.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9203298	9203783	.	+	0	Parent=hg002_chrY_paternal_178.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204391	9204468	.	+	0	Parent=hg002_chrY_paternal_178.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204597	9204708	.	+	0	Parent=hg002_chrY_paternal_178.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204810	9204955	.	+	2	Parent=hg002_chrY_paternal_178.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9205051	9205113	.	+	0	Parent=hg002_chrY_paternal_178.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9203252	9206048	.	+	.	ID=hg002_chrY_paternal_178.3;Parent=hg002_chrY_paternal_178;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_178;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_178.3;transcript_name=hg002_chrY_paternal_178.3
HG002_chrY	Liftoff	exon	9203252	9203783	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204391	9204468	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204597	9204708	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204817	9204955	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205062	9205143	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205838	9206048	.	+	.	Parent=hg002_chrY_paternal_178.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9203298	9203783	.	+	0	Parent=hg002_chrY_paternal_178.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204391	9204468	.	+	0	Parent=hg002_chrY_paternal_178.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204597	9204708	.	+	0	Parent=hg002_chrY_paternal_178.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9204817	9204955	.	+	2	Parent=hg002_chrY_paternal_178.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9205062	9205113	.	+	1	Parent=hg002_chrY_paternal_178.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9203252	9206048	.	+	.	ID=hg002_chrY_paternal_178.4;Parent=hg002_chrY_paternal_178;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=2;gene_id=hg002_chrY_paternal_178;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_178.4;transcript_name=hg002_chrY_paternal_178.4
HG002_chrY	Liftoff	exon	9203252	9203783	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204391	9204468	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204597	9204708	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9204817	9204955	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205051	9205143	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9205838	9206048	.	+	.	Parent=hg002_chrY_paternal_178.4;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	gene	9215320	9220920	.	-	.	ID=hg002_chrY_paternal_179;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=0.997;extra_copy_number=10;copy_num_ID=REF.chrY.159_10
HG002_chrY	Liftoff	transcript	9215320	9220920	.	-	.	ID=hg002_chrY_paternal_179.1;Parent=hg002_chrY_paternal_179;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=10;gene_id=hg002_chrY_paternal_179;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_179.1;transcript_name=hg002_chrY_paternal_179.1
HG002_chrY	Liftoff	exon	9215320	9215379	.	-	.	Parent=hg002_chrY_paternal_179.1;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9218928	9219086	.	-	.	Parent=hg002_chrY_paternal_179.1;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9220587	9220732	.	-	.	Parent=hg002_chrY_paternal_179.1;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9220819	9220920	.	-	.	Parent=hg002_chrY_paternal_179.1;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	gene	9223529	9226325	.	+	.	ID=hg002_chrY_paternal_180;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=6;copy_num_ID=REF.chrY.162_6
HG002_chrY	Liftoff	transcript	9223529	9226325	.	+	.	ID=hg002_chrY_paternal_180.1;Parent=hg002_chrY_paternal_180;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=6;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_180;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_180.1;transcript_name=hg002_chrY_paternal_180.1
HG002_chrY	Liftoff	exon	9223529	9224060	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224668	9224745	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224874	9224985	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225087	9225232	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225339	9225420	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9226115	9226325	.	+	.	Parent=hg002_chrY_paternal_180.1;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9223575	9224060	.	+	0	Parent=hg002_chrY_paternal_180.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224668	9224745	.	+	0	Parent=hg002_chrY_paternal_180.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224874	9224985	.	+	0	Parent=hg002_chrY_paternal_180.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225087	9225232	.	+	2	Parent=hg002_chrY_paternal_180.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225339	9225420	.	+	0	Parent=hg002_chrY_paternal_180.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9226115	9226137	.	+	2	Parent=hg002_chrY_paternal_180.1;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9223529	9226325	.	+	.	ID=hg002_chrY_paternal_180.2;Parent=hg002_chrY_paternal_180;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_180;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_180.2;transcript_name=hg002_chrY_paternal_180.2
HG002_chrY	Liftoff	exon	9223529	9224060	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224668	9224745	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224874	9224985	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225087	9225232	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225328	9225420	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9226115	9226325	.	+	.	Parent=hg002_chrY_paternal_180.2;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9223575	9224060	.	+	0	Parent=hg002_chrY_paternal_180.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224668	9224745	.	+	0	Parent=hg002_chrY_paternal_180.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224874	9224985	.	+	0	Parent=hg002_chrY_paternal_180.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225087	9225232	.	+	2	Parent=hg002_chrY_paternal_180.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225328	9225390	.	+	0	Parent=hg002_chrY_paternal_180.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9223529	9226325	.	+	.	ID=hg002_chrY_paternal_180.3;Parent=hg002_chrY_paternal_180;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_180;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_180.3;transcript_name=hg002_chrY_paternal_180.3
HG002_chrY	Liftoff	exon	9223529	9224060	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224668	9224745	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224874	9224985	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225094	9225232	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225339	9225420	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9226115	9226325	.	+	.	Parent=hg002_chrY_paternal_180.3;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9223575	9224060	.	+	0	Parent=hg002_chrY_paternal_180.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224668	9224745	.	+	0	Parent=hg002_chrY_paternal_180.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9224874	9224985	.	+	0	Parent=hg002_chrY_paternal_180.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225094	9225232	.	+	2	Parent=hg002_chrY_paternal_180.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9225339	9225390	.	+	1	Parent=hg002_chrY_paternal_180.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9223529	9226325	.	+	.	ID=hg002_chrY_paternal_180.4;Parent=hg002_chrY_paternal_180;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=6;gene_id=hg002_chrY_paternal_180;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_180.4;transcript_name=hg002_chrY_paternal_180.4
HG002_chrY	Liftoff	exon	9223529	9224060	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224668	9224745	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9224874	9224985	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225094	9225232	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9225328	9225420	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9226115	9226325	.	+	.	Parent=hg002_chrY_paternal_180.4;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	gene	9235595	9241288	.	-	.	ID=hg002_chrY_paternal_181;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=3;copy_num_ID=REF.chrY.160_3
HG002_chrY	Liftoff	transcript	9235595	9241288	.	-	.	ID=hg002_chrY_paternal_181.1;Parent=hg002_chrY_paternal_181;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=3;gene_id=hg002_chrY_paternal_181;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_181.1;transcript_name=hg002_chrY_paternal_181.1
HG002_chrY	Liftoff	exon	9235595	9235654	.	-	.	Parent=hg002_chrY_paternal_181.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9239205	9239363	.	-	.	Parent=hg002_chrY_paternal_181.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9240866	9241011	.	-	.	Parent=hg002_chrY_paternal_181.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9241098	9241288	.	-	.	Parent=hg002_chrY_paternal_181.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	gene	9243812	9246608	.	+	.	ID=hg002_chrY_paternal_182;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=11;copy_num_ID=REF.chrY.162_11
HG002_chrY	Liftoff	transcript	9243812	9246608	.	+	.	ID=hg002_chrY_paternal_182.1;Parent=hg002_chrY_paternal_182;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=11;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_182;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_182.1;transcript_name=hg002_chrY_paternal_182.1
HG002_chrY	Liftoff	exon	9243812	9244343	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	exon	9244951	9245028	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245157	9245268	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245370	9245515	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245622	9245703	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	exon	9246398	9246608	.	+	.	Parent=hg002_chrY_paternal_182.1;exon_number=6;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9243858	9244343	.	+	0	Parent=hg002_chrY_paternal_182.1;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9244951	9245028	.	+	0	Parent=hg002_chrY_paternal_182.1;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245157	9245268	.	+	0	Parent=hg002_chrY_paternal_182.1;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245370	9245515	.	+	2	Parent=hg002_chrY_paternal_182.1;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245622	9245703	.	+	0	Parent=hg002_chrY_paternal_182.1;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9246398	9246420	.	+	2	Parent=hg002_chrY_paternal_182.1;exon_number=6;extra_copy_number=11
HG002_chrY	Liftoff	transcript	9243812	9246608	.	+	.	ID=hg002_chrY_paternal_182.2;Parent=hg002_chrY_paternal_182;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=11;manual=False;gene_id=hg002_chrY_paternal_182;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_182.2;transcript_name=hg002_chrY_paternal_182.2
HG002_chrY	Liftoff	exon	9243812	9244343	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	exon	9244951	9245028	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245157	9245268	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245370	9245515	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245611	9245703	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	exon	9246398	9246608	.	+	.	Parent=hg002_chrY_paternal_182.2;exon_number=6;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9243858	9244343	.	+	0	Parent=hg002_chrY_paternal_182.2;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9244951	9245028	.	+	0	Parent=hg002_chrY_paternal_182.2;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245157	9245268	.	+	0	Parent=hg002_chrY_paternal_182.2;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245370	9245515	.	+	2	Parent=hg002_chrY_paternal_182.2;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245611	9245673	.	+	0	Parent=hg002_chrY_paternal_182.2;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	transcript	9243812	9246608	.	+	.	ID=hg002_chrY_paternal_182.3;Parent=hg002_chrY_paternal_182;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=11;manual=False;gene_id=hg002_chrY_paternal_182;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_182.3;transcript_name=hg002_chrY_paternal_182.3
HG002_chrY	Liftoff	exon	9243812	9244343	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	exon	9244951	9245028	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245157	9245268	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245377	9245515	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245622	9245703	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	exon	9246398	9246608	.	+	.	Parent=hg002_chrY_paternal_182.3;exon_number=6;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9243858	9244343	.	+	0	Parent=hg002_chrY_paternal_182.3;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9244951	9245028	.	+	0	Parent=hg002_chrY_paternal_182.3;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245157	9245268	.	+	0	Parent=hg002_chrY_paternal_182.3;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245377	9245515	.	+	2	Parent=hg002_chrY_paternal_182.3;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	CDS	9245622	9245673	.	+	1	Parent=hg002_chrY_paternal_182.3;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	transcript	9243812	9246608	.	+	.	ID=hg002_chrY_paternal_182.4;Parent=hg002_chrY_paternal_182;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=11;gene_id=hg002_chrY_paternal_182;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_182.4;transcript_name=hg002_chrY_paternal_182.4
HG002_chrY	Liftoff	exon	9243812	9244343	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	exon	9244951	9245028	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245157	9245268	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245377	9245515	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9245611	9245703	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=5;extra_copy_number=11
HG002_chrY	Liftoff	exon	9246398	9246608	.	+	.	Parent=hg002_chrY_paternal_182.4;exon_number=6;extra_copy_number=11
HG002_chrY	Liftoff	gene	9255869	9261551	.	-	.	ID=hg002_chrY_paternal_183;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=5;copy_num_ID=REF.chrY.160_5
HG002_chrY	Liftoff	transcript	9255869	9261551	.	-	.	ID=hg002_chrY_paternal_183.1;Parent=hg002_chrY_paternal_183;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=5;gene_id=hg002_chrY_paternal_183;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_183.1;transcript_name=hg002_chrY_paternal_183.1
HG002_chrY	Liftoff	exon	9255869	9255928	.	-	.	Parent=hg002_chrY_paternal_183.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9259478	9259636	.	-	.	Parent=hg002_chrY_paternal_183.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9261129	9261274	.	-	.	Parent=hg002_chrY_paternal_183.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9261361	9261551	.	-	.	Parent=hg002_chrY_paternal_183.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	gene	9264075	9266889	.	+	.	ID=hg002_chrY_paternal_184;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=3;copy_num_ID=REF.chrY.150_3
HG002_chrY	Liftoff	transcript	9264075	9266889	.	+	.	ID=hg002_chrY_paternal_184.1;Parent=hg002_chrY_paternal_184;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_184;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_184.1;transcript_name=hg002_chrY_paternal_184.1
HG002_chrY	Liftoff	exon	9264075	9264624	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265232	9265309	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265438	9265549	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265651	9265796	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265903	9265984	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9266679	9266889	.	+	.	Parent=hg002_chrY_paternal_184.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9264121	9264624	.	+	0	Parent=hg002_chrY_paternal_184.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265232	9265309	.	+	0	Parent=hg002_chrY_paternal_184.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265438	9265549	.	+	0	Parent=hg002_chrY_paternal_184.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265651	9265796	.	+	2	Parent=hg002_chrY_paternal_184.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265903	9265984	.	+	0	Parent=hg002_chrY_paternal_184.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9266679	9266701	.	+	2	Parent=hg002_chrY_paternal_184.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9264075	9266889	.	+	.	ID=hg002_chrY_paternal_184.2;Parent=hg002_chrY_paternal_184;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_184;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_184.2;transcript_name=hg002_chrY_paternal_184.2
HG002_chrY	Liftoff	exon	9264075	9264624	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265232	9265309	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265438	9265549	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265651	9265796	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265892	9265984	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9266679	9266889	.	+	.	Parent=hg002_chrY_paternal_184.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9264121	9264624	.	+	0	Parent=hg002_chrY_paternal_184.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265232	9265309	.	+	0	Parent=hg002_chrY_paternal_184.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265438	9265549	.	+	0	Parent=hg002_chrY_paternal_184.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265651	9265796	.	+	2	Parent=hg002_chrY_paternal_184.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265892	9265954	.	+	0	Parent=hg002_chrY_paternal_184.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9264075	9266889	.	+	.	ID=hg002_chrY_paternal_184.3;Parent=hg002_chrY_paternal_184;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_184;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_184.3;transcript_name=hg002_chrY_paternal_184.3
HG002_chrY	Liftoff	exon	9264075	9264624	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265232	9265309	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265438	9265549	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265658	9265796	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265903	9265984	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9266679	9266889	.	+	.	Parent=hg002_chrY_paternal_184.3;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9264121	9264624	.	+	0	Parent=hg002_chrY_paternal_184.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265232	9265309	.	+	0	Parent=hg002_chrY_paternal_184.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265438	9265549	.	+	0	Parent=hg002_chrY_paternal_184.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265658	9265796	.	+	2	Parent=hg002_chrY_paternal_184.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9265903	9265954	.	+	1	Parent=hg002_chrY_paternal_184.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9264075	9266889	.	+	.	ID=hg002_chrY_paternal_184.4;Parent=hg002_chrY_paternal_184;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=3;gene_id=hg002_chrY_paternal_184;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_184.4;transcript_name=hg002_chrY_paternal_184.4
HG002_chrY	Liftoff	exon	9264075	9264624	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265232	9265309	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265438	9265549	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265658	9265796	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9265892	9265984	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9266679	9266889	.	+	.	Parent=hg002_chrY_paternal_184.4;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	gene	9276178	9281866	.	-	.	ID=hg002_chrY_paternal_185;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=13;copy_num_ID=REF.chrY.160_13
HG002_chrY	Liftoff	transcript	9276178	9281866	.	-	.	ID=hg002_chrY_paternal_185.1;Parent=hg002_chrY_paternal_185;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=13;gene_id=hg002_chrY_paternal_185;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_185.1;transcript_name=hg002_chrY_paternal_185.1
HG002_chrY	Liftoff	exon	9276178	9276237	.	-	.	Parent=hg002_chrY_paternal_185.1;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9279787	9279945	.	-	.	Parent=hg002_chrY_paternal_185.1;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9281444	9281589	.	-	.	Parent=hg002_chrY_paternal_185.1;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9281676	9281866	.	-	.	Parent=hg002_chrY_paternal_185.1;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	gene	9284390	9287186	.	+	.	ID=hg002_chrY_paternal_186;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=2;copy_num_ID=REF.chrY.152_2
HG002_chrY	Liftoff	transcript	9284390	9287186	.	+	.	ID=hg002_chrY_paternal_186.1;Parent=hg002_chrY_paternal_186;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_186;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_186.1;transcript_name=hg002_chrY_paternal_186.1
HG002_chrY	Liftoff	exon	9284390	9284921	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285529	9285606	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285735	9285846	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285948	9286093	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286200	9286281	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286976	9287186	.	+	.	Parent=hg002_chrY_paternal_186.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9284436	9284921	.	+	0	Parent=hg002_chrY_paternal_186.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285529	9285606	.	+	0	Parent=hg002_chrY_paternal_186.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285735	9285846	.	+	0	Parent=hg002_chrY_paternal_186.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285948	9286093	.	+	2	Parent=hg002_chrY_paternal_186.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9286200	9286281	.	+	0	Parent=hg002_chrY_paternal_186.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9286976	9286998	.	+	2	Parent=hg002_chrY_paternal_186.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9284390	9287186	.	+	.	ID=hg002_chrY_paternal_186.2;Parent=hg002_chrY_paternal_186;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_186;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_186.2;transcript_name=hg002_chrY_paternal_186.2
HG002_chrY	Liftoff	exon	9284390	9284921	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285529	9285606	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285735	9285846	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285948	9286093	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286189	9286281	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286976	9287186	.	+	.	Parent=hg002_chrY_paternal_186.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9284436	9284921	.	+	0	Parent=hg002_chrY_paternal_186.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285529	9285606	.	+	0	Parent=hg002_chrY_paternal_186.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285735	9285846	.	+	0	Parent=hg002_chrY_paternal_186.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285948	9286093	.	+	2	Parent=hg002_chrY_paternal_186.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9286189	9286251	.	+	0	Parent=hg002_chrY_paternal_186.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9284390	9287186	.	+	.	ID=hg002_chrY_paternal_186.3;Parent=hg002_chrY_paternal_186;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_186;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_186.3;transcript_name=hg002_chrY_paternal_186.3
HG002_chrY	Liftoff	exon	9284390	9284921	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285529	9285606	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285735	9285846	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285955	9286093	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286200	9286281	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286976	9287186	.	+	.	Parent=hg002_chrY_paternal_186.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9284436	9284921	.	+	0	Parent=hg002_chrY_paternal_186.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285529	9285606	.	+	0	Parent=hg002_chrY_paternal_186.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285735	9285846	.	+	0	Parent=hg002_chrY_paternal_186.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9285955	9286093	.	+	2	Parent=hg002_chrY_paternal_186.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9286200	9286251	.	+	1	Parent=hg002_chrY_paternal_186.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9284390	9287186	.	+	.	ID=hg002_chrY_paternal_186.4;Parent=hg002_chrY_paternal_186;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=2;gene_id=hg002_chrY_paternal_186;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_186.4;transcript_name=hg002_chrY_paternal_186.4
HG002_chrY	Liftoff	exon	9284390	9284921	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285529	9285606	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285735	9285846	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9285955	9286093	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286189	9286281	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9286976	9287186	.	+	.	Parent=hg002_chrY_paternal_186.4;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	gene	9296446	9302053	.	-	.	ID=hg002_chrY_paternal_187;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=2;copy_num_ID=REF.chrY.159_2
HG002_chrY	Liftoff	transcript	9296446	9302053	.	-	.	ID=hg002_chrY_paternal_187.1;Parent=hg002_chrY_paternal_187;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=2;gene_id=hg002_chrY_paternal_187;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_187.1;transcript_name=hg002_chrY_paternal_187.1
HG002_chrY	Liftoff	exon	9296446	9296505	.	-	.	Parent=hg002_chrY_paternal_187.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9300057	9300215	.	-	.	Parent=hg002_chrY_paternal_187.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9301720	9301865	.	-	.	Parent=hg002_chrY_paternal_187.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9301952	9302053	.	-	.	Parent=hg002_chrY_paternal_187.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	gene	9304666	9307462	.	+	.	ID=hg002_chrY_paternal_188;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.152_0
HG002_chrY	Liftoff	transcript	9304666	9307462	.	+	.	ID=hg002_chrY_paternal_188.1;Parent=hg002_chrY_paternal_188;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_188;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_188.1;transcript_name=hg002_chrY_paternal_188.1
HG002_chrY	Liftoff	exon	9304666	9305197	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9305805	9305882	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306011	9306122	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306224	9306369	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306476	9306557	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9307252	9307462	.	+	.	Parent=hg002_chrY_paternal_188.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9304712	9305197	.	+	0	Parent=hg002_chrY_paternal_188.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9305805	9305882	.	+	0	Parent=hg002_chrY_paternal_188.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306011	9306122	.	+	0	Parent=hg002_chrY_paternal_188.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306224	9306369	.	+	2	Parent=hg002_chrY_paternal_188.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306476	9306557	.	+	0	Parent=hg002_chrY_paternal_188.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9307252	9307274	.	+	2	Parent=hg002_chrY_paternal_188.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9304666	9307462	.	+	.	ID=hg002_chrY_paternal_188.2;Parent=hg002_chrY_paternal_188;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_188;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_188.2;transcript_name=hg002_chrY_paternal_188.2
HG002_chrY	Liftoff	exon	9304666	9305197	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9305805	9305882	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306011	9306122	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306224	9306369	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306465	9306557	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9307252	9307462	.	+	.	Parent=hg002_chrY_paternal_188.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9304712	9305197	.	+	0	Parent=hg002_chrY_paternal_188.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9305805	9305882	.	+	0	Parent=hg002_chrY_paternal_188.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306011	9306122	.	+	0	Parent=hg002_chrY_paternal_188.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306224	9306369	.	+	2	Parent=hg002_chrY_paternal_188.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306465	9306527	.	+	0	Parent=hg002_chrY_paternal_188.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9304666	9307462	.	+	.	ID=hg002_chrY_paternal_188.3;Parent=hg002_chrY_paternal_188;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_188;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_188.3;transcript_name=hg002_chrY_paternal_188.3
HG002_chrY	Liftoff	exon	9304666	9305197	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9305805	9305882	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306011	9306122	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306231	9306369	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306476	9306557	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9307252	9307462	.	+	.	Parent=hg002_chrY_paternal_188.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9304712	9305197	.	+	0	Parent=hg002_chrY_paternal_188.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9305805	9305882	.	+	0	Parent=hg002_chrY_paternal_188.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306011	9306122	.	+	0	Parent=hg002_chrY_paternal_188.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306231	9306369	.	+	2	Parent=hg002_chrY_paternal_188.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9306476	9306527	.	+	1	Parent=hg002_chrY_paternal_188.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9304666	9307462	.	+	.	ID=hg002_chrY_paternal_188.4;Parent=hg002_chrY_paternal_188;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_188;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_188.4;transcript_name=hg002_chrY_paternal_188.4
HG002_chrY	Liftoff	exon	9304666	9305197	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9305805	9305882	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306011	9306122	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306231	9306369	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9306465	9306557	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9307252	9307462	.	+	.	Parent=hg002_chrY_paternal_188.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	9316734	9322334	.	-	.	ID=hg002_chrY_paternal_189;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=0.997;extra_copy_number=9;copy_num_ID=REF.chrY.159_9
HG002_chrY	Liftoff	transcript	9316734	9322334	.	-	.	ID=hg002_chrY_paternal_189.1;Parent=hg002_chrY_paternal_189;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=9;gene_id=hg002_chrY_paternal_189;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_189.1;transcript_name=hg002_chrY_paternal_189.1
HG002_chrY	Liftoff	exon	9316734	9316793	.	-	.	Parent=hg002_chrY_paternal_189.1;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9320342	9320500	.	-	.	Parent=hg002_chrY_paternal_189.1;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9322001	9322146	.	-	.	Parent=hg002_chrY_paternal_189.1;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9322233	9322334	.	-	.	Parent=hg002_chrY_paternal_189.1;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	gene	9324943	9327739	.	+	.	ID=hg002_chrY_paternal_190;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=3;copy_num_ID=REF.chrY.162_3
HG002_chrY	Liftoff	transcript	9324943	9327739	.	+	.	ID=hg002_chrY_paternal_190.1;Parent=hg002_chrY_paternal_190;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_190;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_190.1;transcript_name=hg002_chrY_paternal_190.1
HG002_chrY	Liftoff	exon	9324943	9325474	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326082	9326159	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326288	9326399	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326501	9326646	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326753	9326834	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9327529	9327739	.	+	.	Parent=hg002_chrY_paternal_190.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9324989	9325474	.	+	0	Parent=hg002_chrY_paternal_190.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326082	9326159	.	+	0	Parent=hg002_chrY_paternal_190.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326288	9326399	.	+	0	Parent=hg002_chrY_paternal_190.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326501	9326646	.	+	2	Parent=hg002_chrY_paternal_190.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326753	9326834	.	+	0	Parent=hg002_chrY_paternal_190.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9327529	9327551	.	+	2	Parent=hg002_chrY_paternal_190.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9324943	9327739	.	+	.	ID=hg002_chrY_paternal_190.2;Parent=hg002_chrY_paternal_190;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_190;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_190.2;transcript_name=hg002_chrY_paternal_190.2
HG002_chrY	Liftoff	exon	9324943	9325474	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326082	9326159	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326288	9326399	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326501	9326646	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326742	9326834	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9327529	9327739	.	+	.	Parent=hg002_chrY_paternal_190.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9324989	9325474	.	+	0	Parent=hg002_chrY_paternal_190.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326082	9326159	.	+	0	Parent=hg002_chrY_paternal_190.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326288	9326399	.	+	0	Parent=hg002_chrY_paternal_190.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326501	9326646	.	+	2	Parent=hg002_chrY_paternal_190.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326742	9326804	.	+	0	Parent=hg002_chrY_paternal_190.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9324943	9327739	.	+	.	ID=hg002_chrY_paternal_190.3;Parent=hg002_chrY_paternal_190;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_190;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_190.3;transcript_name=hg002_chrY_paternal_190.3
HG002_chrY	Liftoff	exon	9324943	9325474	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326082	9326159	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326288	9326399	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326508	9326646	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326753	9326834	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9327529	9327739	.	+	.	Parent=hg002_chrY_paternal_190.3;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9324989	9325474	.	+	0	Parent=hg002_chrY_paternal_190.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326082	9326159	.	+	0	Parent=hg002_chrY_paternal_190.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326288	9326399	.	+	0	Parent=hg002_chrY_paternal_190.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326508	9326646	.	+	2	Parent=hg002_chrY_paternal_190.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9326753	9326804	.	+	1	Parent=hg002_chrY_paternal_190.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9324943	9327739	.	+	.	ID=hg002_chrY_paternal_190.4;Parent=hg002_chrY_paternal_190;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=3;gene_id=hg002_chrY_paternal_190;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_190.4;transcript_name=hg002_chrY_paternal_190.4
HG002_chrY	Liftoff	exon	9324943	9325474	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326082	9326159	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326288	9326399	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326508	9326646	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9326742	9326834	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9327529	9327739	.	+	.	Parent=hg002_chrY_paternal_190.4;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	gene	9337012	9342705	.	-	.	ID=hg002_chrY_paternal_191;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=0.998;extra_copy_number=1;copy_num_ID=REF.chrY.160_1
HG002_chrY	Liftoff	transcript	9337012	9342705	.	-	.	ID=hg002_chrY_paternal_191.1;Parent=hg002_chrY_paternal_191;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_191;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_191.1;transcript_name=hg002_chrY_paternal_191.1
HG002_chrY	Liftoff	exon	9337012	9337071	.	-	.	Parent=hg002_chrY_paternal_191.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9340622	9340780	.	-	.	Parent=hg002_chrY_paternal_191.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9342283	9342428	.	-	.	Parent=hg002_chrY_paternal_191.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9342515	9342705	.	-	.	Parent=hg002_chrY_paternal_191.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	9345229	9348025	.	+	.	ID=hg002_chrY_paternal_192;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=10;copy_num_ID=REF.chrY.162_10
HG002_chrY	Liftoff	transcript	9345229	9348025	.	+	.	ID=hg002_chrY_paternal_192.1;Parent=hg002_chrY_paternal_192;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=10;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_192;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_192.1;transcript_name=hg002_chrY_paternal_192.1
HG002_chrY	Liftoff	exon	9345229	9345760	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346368	9346445	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346574	9346685	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346787	9346932	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347039	9347120	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347815	9348025	.	+	.	Parent=hg002_chrY_paternal_192.1;exon_number=6;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9345275	9345760	.	+	0	Parent=hg002_chrY_paternal_192.1;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346368	9346445	.	+	0	Parent=hg002_chrY_paternal_192.1;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346574	9346685	.	+	0	Parent=hg002_chrY_paternal_192.1;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346787	9346932	.	+	2	Parent=hg002_chrY_paternal_192.1;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9347039	9347120	.	+	0	Parent=hg002_chrY_paternal_192.1;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9347815	9347837	.	+	2	Parent=hg002_chrY_paternal_192.1;exon_number=6;extra_copy_number=10
HG002_chrY	Liftoff	transcript	9345229	9348025	.	+	.	ID=hg002_chrY_paternal_192.2;Parent=hg002_chrY_paternal_192;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=10;manual=False;gene_id=hg002_chrY_paternal_192;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_192.2;transcript_name=hg002_chrY_paternal_192.2
HG002_chrY	Liftoff	exon	9345229	9345760	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346368	9346445	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346574	9346685	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346787	9346932	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347028	9347120	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347815	9348025	.	+	.	Parent=hg002_chrY_paternal_192.2;exon_number=6;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9345275	9345760	.	+	0	Parent=hg002_chrY_paternal_192.2;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346368	9346445	.	+	0	Parent=hg002_chrY_paternal_192.2;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346574	9346685	.	+	0	Parent=hg002_chrY_paternal_192.2;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346787	9346932	.	+	2	Parent=hg002_chrY_paternal_192.2;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9347028	9347090	.	+	0	Parent=hg002_chrY_paternal_192.2;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	transcript	9345229	9348025	.	+	.	ID=hg002_chrY_paternal_192.3;Parent=hg002_chrY_paternal_192;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=10;manual=False;gene_id=hg002_chrY_paternal_192;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_192.3;transcript_name=hg002_chrY_paternal_192.3
HG002_chrY	Liftoff	exon	9345229	9345760	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346368	9346445	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346574	9346685	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346794	9346932	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347039	9347120	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347815	9348025	.	+	.	Parent=hg002_chrY_paternal_192.3;exon_number=6;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9345275	9345760	.	+	0	Parent=hg002_chrY_paternal_192.3;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346368	9346445	.	+	0	Parent=hg002_chrY_paternal_192.3;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346574	9346685	.	+	0	Parent=hg002_chrY_paternal_192.3;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9346794	9346932	.	+	2	Parent=hg002_chrY_paternal_192.3;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	CDS	9347039	9347090	.	+	1	Parent=hg002_chrY_paternal_192.3;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	transcript	9345229	9348025	.	+	.	ID=hg002_chrY_paternal_192.4;Parent=hg002_chrY_paternal_192;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=10;gene_id=hg002_chrY_paternal_192;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_192.4;transcript_name=hg002_chrY_paternal_192.4
HG002_chrY	Liftoff	exon	9345229	9345760	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346368	9346445	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346574	9346685	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9346794	9346932	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347028	9347120	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=5;extra_copy_number=10
HG002_chrY	Liftoff	exon	9347815	9348025	.	+	.	Parent=hg002_chrY_paternal_192.4;exon_number=6;extra_copy_number=10
HG002_chrY	Liftoff	gene	9357286	9362968	.	-	.	ID=hg002_chrY_paternal_193;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=6;copy_num_ID=REF.chrY.160_6
HG002_chrY	Liftoff	transcript	9357286	9362968	.	-	.	ID=hg002_chrY_paternal_193.1;Parent=hg002_chrY_paternal_193;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=6;gene_id=hg002_chrY_paternal_193;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_193.1;transcript_name=hg002_chrY_paternal_193.1
HG002_chrY	Liftoff	exon	9357286	9357345	.	-	.	Parent=hg002_chrY_paternal_193.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9360895	9361053	.	-	.	Parent=hg002_chrY_paternal_193.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9362546	9362691	.	-	.	Parent=hg002_chrY_paternal_193.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9362778	9362968	.	-	.	Parent=hg002_chrY_paternal_193.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	gene	9365492	9368306	.	+	.	ID=hg002_chrY_paternal_194;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=4;copy_num_ID=REF.chrY.150_4
HG002_chrY	Liftoff	transcript	9365492	9368306	.	+	.	ID=hg002_chrY_paternal_194.1;Parent=hg002_chrY_paternal_194;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_194;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_194.1;transcript_name=hg002_chrY_paternal_194.1
HG002_chrY	Liftoff	exon	9365492	9366041	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366649	9366726	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366855	9366966	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367068	9367213	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367320	9367401	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9368096	9368306	.	+	.	Parent=hg002_chrY_paternal_194.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9365538	9366041	.	+	0	Parent=hg002_chrY_paternal_194.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366649	9366726	.	+	0	Parent=hg002_chrY_paternal_194.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366855	9366966	.	+	0	Parent=hg002_chrY_paternal_194.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367068	9367213	.	+	2	Parent=hg002_chrY_paternal_194.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367320	9367401	.	+	0	Parent=hg002_chrY_paternal_194.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9368096	9368118	.	+	2	Parent=hg002_chrY_paternal_194.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9365492	9368306	.	+	.	ID=hg002_chrY_paternal_194.2;Parent=hg002_chrY_paternal_194;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_194;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_194.2;transcript_name=hg002_chrY_paternal_194.2
HG002_chrY	Liftoff	exon	9365492	9366041	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366649	9366726	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366855	9366966	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367068	9367213	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367309	9367401	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9368096	9368306	.	+	.	Parent=hg002_chrY_paternal_194.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9365538	9366041	.	+	0	Parent=hg002_chrY_paternal_194.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366649	9366726	.	+	0	Parent=hg002_chrY_paternal_194.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366855	9366966	.	+	0	Parent=hg002_chrY_paternal_194.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367068	9367213	.	+	2	Parent=hg002_chrY_paternal_194.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367309	9367371	.	+	0	Parent=hg002_chrY_paternal_194.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9365492	9368306	.	+	.	ID=hg002_chrY_paternal_194.3;Parent=hg002_chrY_paternal_194;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_194;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_194.3;transcript_name=hg002_chrY_paternal_194.3
HG002_chrY	Liftoff	exon	9365492	9366041	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366649	9366726	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366855	9366966	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367075	9367213	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367320	9367401	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9368096	9368306	.	+	.	Parent=hg002_chrY_paternal_194.3;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9365538	9366041	.	+	0	Parent=hg002_chrY_paternal_194.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366649	9366726	.	+	0	Parent=hg002_chrY_paternal_194.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9366855	9366966	.	+	0	Parent=hg002_chrY_paternal_194.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367075	9367213	.	+	2	Parent=hg002_chrY_paternal_194.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9367320	9367371	.	+	1	Parent=hg002_chrY_paternal_194.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9365492	9368306	.	+	.	ID=hg002_chrY_paternal_194.4;Parent=hg002_chrY_paternal_194;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=4;gene_id=hg002_chrY_paternal_194;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_194.4;transcript_name=hg002_chrY_paternal_194.4
HG002_chrY	Liftoff	exon	9365492	9366041	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366649	9366726	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9366855	9366966	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367075	9367213	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9367309	9367401	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9368096	9368306	.	+	.	Parent=hg002_chrY_paternal_194.4;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	gene	9377599	9383294	.	-	.	ID=hg002_chrY_paternal_195;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=18;copy_num_ID=REF.chrY.160_18
HG002_chrY	Liftoff	transcript	9377599	9383294	.	-	.	ID=hg002_chrY_paternal_195.1;Parent=hg002_chrY_paternal_195;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=18;gene_id=hg002_chrY_paternal_195;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_195.1;transcript_name=hg002_chrY_paternal_195.1
HG002_chrY	Liftoff	exon	9377599	9377658	.	-	.	Parent=hg002_chrY_paternal_195.1;exon_number=4;extra_copy_number=18
HG002_chrY	Liftoff	exon	9381213	9381371	.	-	.	Parent=hg002_chrY_paternal_195.1;exon_number=3;extra_copy_number=18
HG002_chrY	Liftoff	exon	9382872	9383017	.	-	.	Parent=hg002_chrY_paternal_195.1;exon_number=2;extra_copy_number=18
HG002_chrY	Liftoff	exon	9383104	9383294	.	-	.	Parent=hg002_chrY_paternal_195.1;exon_number=1;extra_copy_number=18
HG002_chrY	Liftoff	gene	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.998;valid_ORFs=4;extra_copy_number=4;copy_num_ID=REF.chrY.156_4
HG002_chrY	Liftoff	transcript	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196.1;Parent=hg002_chrY_paternal_196;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_196.1;transcript_name=hg002_chrY_paternal_196.1
HG002_chrY	Liftoff	exon	9385818	9386349	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386957	9387034	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387163	9387274	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387376	9387521	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387617	9387709	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9388404	9388614	.	+	.	Parent=hg002_chrY_paternal_196.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9385864	9386349	.	+	0	Parent=hg002_chrY_paternal_196.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9386957	9387034	.	+	0	Parent=hg002_chrY_paternal_196.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387163	9387274	.	+	0	Parent=hg002_chrY_paternal_196.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387376	9387521	.	+	2	Parent=hg002_chrY_paternal_196.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387617	9387679	.	+	0	Parent=hg002_chrY_paternal_196.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196.2;Parent=hg002_chrY_paternal_196;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_196.2;transcript_name=hg002_chrY_paternal_196.2
HG002_chrY	Liftoff	exon	9385818	9385950	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386212	9386349	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386957	9387034	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387163	9387274	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387376	9387521	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387628	9387709	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	exon	9388404	9388614	.	+	.	Parent=hg002_chrY_paternal_196.2;exon_number=7;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9385864	9385950	.	+	0	Parent=hg002_chrY_paternal_196.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9386212	9386349	.	+	0	Parent=hg002_chrY_paternal_196.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9386957	9387034	.	+	0	Parent=hg002_chrY_paternal_196.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387163	9387274	.	+	0	Parent=hg002_chrY_paternal_196.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387376	9387521	.	+	2	Parent=hg002_chrY_paternal_196.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387628	9387709	.	+	0	Parent=hg002_chrY_paternal_196.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9388404	9388426	.	+	2	Parent=hg002_chrY_paternal_196.2;exon_number=7;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196.3;Parent=hg002_chrY_paternal_196;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_196.3;transcript_name=hg002_chrY_paternal_196.3
HG002_chrY	Liftoff	exon	9385818	9386349	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386957	9387034	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387163	9387274	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387376	9387521	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387628	9387709	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9388404	9388614	.	+	.	Parent=hg002_chrY_paternal_196.3;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9385864	9386349	.	+	0	Parent=hg002_chrY_paternal_196.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9386957	9387034	.	+	0	Parent=hg002_chrY_paternal_196.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387163	9387274	.	+	0	Parent=hg002_chrY_paternal_196.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387376	9387521	.	+	2	Parent=hg002_chrY_paternal_196.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387628	9387709	.	+	0	Parent=hg002_chrY_paternal_196.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9388404	9388426	.	+	2	Parent=hg002_chrY_paternal_196.3;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196.4;Parent=hg002_chrY_paternal_196;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_196.4;transcript_name=hg002_chrY_paternal_196.4
HG002_chrY	Liftoff	exon	9385818	9386349	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386957	9387034	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387163	9387274	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387383	9387521	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387628	9387709	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9388404	9388614	.	+	.	Parent=hg002_chrY_paternal_196.4;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9385864	9386349	.	+	0	Parent=hg002_chrY_paternal_196.4;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9386957	9387034	.	+	0	Parent=hg002_chrY_paternal_196.4;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387163	9387274	.	+	0	Parent=hg002_chrY_paternal_196.4;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387383	9387521	.	+	2	Parent=hg002_chrY_paternal_196.4;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9387628	9387679	.	+	1	Parent=hg002_chrY_paternal_196.4;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9385818	9388614	.	+	.	ID=hg002_chrY_paternal_196.5;Parent=hg002_chrY_paternal_196;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=4;gene_id=hg002_chrY_paternal_196;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_196.5;transcript_name=hg002_chrY_paternal_196.5
HG002_chrY	Liftoff	exon	9385818	9386349	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9386957	9387034	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387163	9387274	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387383	9387521	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9387617	9387709	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9388404	9388614	.	+	.	Parent=hg002_chrY_paternal_196.5;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	gene	9397894	9403497	.	-	.	ID=hg002_chrY_paternal_197;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=6;copy_num_ID=REF.chrY.159_6
HG002_chrY	Liftoff	transcript	9397894	9403497	.	-	.	ID=hg002_chrY_paternal_197.1;Parent=hg002_chrY_paternal_197;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=6;gene_id=hg002_chrY_paternal_197;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_197.1;transcript_name=hg002_chrY_paternal_197.1
HG002_chrY	Liftoff	exon	9397894	9397953	.	-	.	Parent=hg002_chrY_paternal_197.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9401505	9401663	.	-	.	Parent=hg002_chrY_paternal_197.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9403164	9403309	.	-	.	Parent=hg002_chrY_paternal_197.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9403396	9403497	.	-	.	Parent=hg002_chrY_paternal_197.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	gene	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.999;valid_ORFs=4;extra_copy_number=3;copy_num_ID=REF.chrY.156_3
HG002_chrY	Liftoff	transcript	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198.1;Parent=hg002_chrY_paternal_198;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_198.1;transcript_name=hg002_chrY_paternal_198.1
HG002_chrY	Liftoff	exon	9406110	9406641	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407249	9407326	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407455	9407566	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407668	9407813	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407909	9408001	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9408696	9408906	.	+	.	Parent=hg002_chrY_paternal_198.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9406156	9406641	.	+	0	Parent=hg002_chrY_paternal_198.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407249	9407326	.	+	0	Parent=hg002_chrY_paternal_198.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407455	9407566	.	+	0	Parent=hg002_chrY_paternal_198.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407668	9407813	.	+	2	Parent=hg002_chrY_paternal_198.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407909	9407971	.	+	0	Parent=hg002_chrY_paternal_198.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198.2;Parent=hg002_chrY_paternal_198;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_198.2;transcript_name=hg002_chrY_paternal_198.2
HG002_chrY	Liftoff	exon	9406110	9406242	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9406504	9406641	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407249	9407326	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407455	9407566	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407668	9407813	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407920	9408001	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	exon	9408696	9408906	.	+	.	Parent=hg002_chrY_paternal_198.2;exon_number=7;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9406156	9406242	.	+	0	Parent=hg002_chrY_paternal_198.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9406504	9406641	.	+	0	Parent=hg002_chrY_paternal_198.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407249	9407326	.	+	0	Parent=hg002_chrY_paternal_198.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407455	9407566	.	+	0	Parent=hg002_chrY_paternal_198.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407668	9407813	.	+	2	Parent=hg002_chrY_paternal_198.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407920	9408001	.	+	0	Parent=hg002_chrY_paternal_198.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9408696	9408718	.	+	2	Parent=hg002_chrY_paternal_198.2;exon_number=7;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198.3;Parent=hg002_chrY_paternal_198;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_198.3;transcript_name=hg002_chrY_paternal_198.3
HG002_chrY	Liftoff	exon	9406110	9406641	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407249	9407326	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407455	9407566	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407668	9407813	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407920	9408001	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9408696	9408906	.	+	.	Parent=hg002_chrY_paternal_198.3;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9406156	9406641	.	+	0	Parent=hg002_chrY_paternal_198.3;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407249	9407326	.	+	0	Parent=hg002_chrY_paternal_198.3;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407455	9407566	.	+	0	Parent=hg002_chrY_paternal_198.3;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407668	9407813	.	+	2	Parent=hg002_chrY_paternal_198.3;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407920	9408001	.	+	0	Parent=hg002_chrY_paternal_198.3;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9408696	9408718	.	+	2	Parent=hg002_chrY_paternal_198.3;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198.4;Parent=hg002_chrY_paternal_198;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_198.4;transcript_name=hg002_chrY_paternal_198.4
HG002_chrY	Liftoff	exon	9406110	9406641	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407249	9407326	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407455	9407566	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407675	9407813	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407920	9408001	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9408696	9408906	.	+	.	Parent=hg002_chrY_paternal_198.4;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9406156	9406641	.	+	0	Parent=hg002_chrY_paternal_198.4;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407249	9407326	.	+	0	Parent=hg002_chrY_paternal_198.4;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407455	9407566	.	+	0	Parent=hg002_chrY_paternal_198.4;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407675	9407813	.	+	2	Parent=hg002_chrY_paternal_198.4;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9407920	9407971	.	+	1	Parent=hg002_chrY_paternal_198.4;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9406110	9408906	.	+	.	ID=hg002_chrY_paternal_198.5;Parent=hg002_chrY_paternal_198;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=3;gene_id=hg002_chrY_paternal_198;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_198.5;transcript_name=hg002_chrY_paternal_198.5
HG002_chrY	Liftoff	exon	9406110	9406641	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407249	9407326	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407455	9407566	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407675	9407813	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9407909	9408001	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9408696	9408906	.	+	.	Parent=hg002_chrY_paternal_198.5;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	gene	9418176	9423787	.	-	.	ID=hg002_chrY_paternal_199;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=4;copy_num_ID=REF.chrY.159_4
HG002_chrY	Liftoff	transcript	9418176	9423787	.	-	.	ID=hg002_chrY_paternal_199.1;Parent=hg002_chrY_paternal_199;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=4;gene_id=hg002_chrY_paternal_199;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_199.1;transcript_name=hg002_chrY_paternal_199.1
HG002_chrY	Liftoff	exon	9418176	9418235	.	-	.	Parent=hg002_chrY_paternal_199.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9421787	9421945	.	-	.	Parent=hg002_chrY_paternal_199.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9423454	9423599	.	-	.	Parent=hg002_chrY_paternal_199.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9423686	9423787	.	-	.	Parent=hg002_chrY_paternal_199.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	gene	9426400	9429196	.	+	.	ID=hg002_chrY_paternal_200;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.995;valid_ORFs=3;extra_copy_number=15;copy_num_ID=REF.chrY.162_15
HG002_chrY	Liftoff	transcript	9426400	9429196	.	+	.	ID=hg002_chrY_paternal_200.1;Parent=hg002_chrY_paternal_200;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=15;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_200;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_200.1;transcript_name=hg002_chrY_paternal_200.1
HG002_chrY	Liftoff	exon	9426400	9426931	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427539	9427616	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427745	9427856	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427958	9428103	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428210	9428291	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428986	9429196	.	+	.	Parent=hg002_chrY_paternal_200.1;exon_number=6;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9426446	9426931	.	+	0	Parent=hg002_chrY_paternal_200.1;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427539	9427616	.	+	0	Parent=hg002_chrY_paternal_200.1;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427745	9427856	.	+	0	Parent=hg002_chrY_paternal_200.1;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427958	9428103	.	+	2	Parent=hg002_chrY_paternal_200.1;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9428210	9428291	.	+	0	Parent=hg002_chrY_paternal_200.1;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9428986	9429008	.	+	2	Parent=hg002_chrY_paternal_200.1;exon_number=6;extra_copy_number=15
HG002_chrY	Liftoff	transcript	9426400	9429196	.	+	.	ID=hg002_chrY_paternal_200.2;Parent=hg002_chrY_paternal_200;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=15;manual=False;gene_id=hg002_chrY_paternal_200;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_200.2;transcript_name=hg002_chrY_paternal_200.2
HG002_chrY	Liftoff	exon	9426400	9426931	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427539	9427616	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427745	9427856	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427958	9428103	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428199	9428291	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428986	9429196	.	+	.	Parent=hg002_chrY_paternal_200.2;exon_number=6;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9426446	9426931	.	+	0	Parent=hg002_chrY_paternal_200.2;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427539	9427616	.	+	0	Parent=hg002_chrY_paternal_200.2;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427745	9427856	.	+	0	Parent=hg002_chrY_paternal_200.2;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427958	9428103	.	+	2	Parent=hg002_chrY_paternal_200.2;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9428199	9428261	.	+	0	Parent=hg002_chrY_paternal_200.2;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	transcript	9426400	9429196	.	+	.	ID=hg002_chrY_paternal_200.3;Parent=hg002_chrY_paternal_200;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=15;manual=False;gene_id=hg002_chrY_paternal_200;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_200.3;transcript_name=hg002_chrY_paternal_200.3
HG002_chrY	Liftoff	exon	9426400	9426931	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427539	9427616	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427745	9427856	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427965	9428103	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428210	9428291	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428986	9429196	.	+	.	Parent=hg002_chrY_paternal_200.3;exon_number=6;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9426446	9426931	.	+	0	Parent=hg002_chrY_paternal_200.3;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427539	9427616	.	+	0	Parent=hg002_chrY_paternal_200.3;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427745	9427856	.	+	0	Parent=hg002_chrY_paternal_200.3;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9427965	9428103	.	+	2	Parent=hg002_chrY_paternal_200.3;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	CDS	9428210	9428261	.	+	1	Parent=hg002_chrY_paternal_200.3;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	transcript	9426400	9429196	.	+	.	ID=hg002_chrY_paternal_200.4;Parent=hg002_chrY_paternal_200;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=15;gene_id=hg002_chrY_paternal_200;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_200.4;transcript_name=hg002_chrY_paternal_200.4
HG002_chrY	Liftoff	exon	9426400	9426931	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427539	9427616	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427745	9427856	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	exon	9427965	9428103	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428199	9428291	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=5;extra_copy_number=15
HG002_chrY	Liftoff	exon	9428986	9429196	.	+	.	Parent=hg002_chrY_paternal_200.4;exon_number=6;extra_copy_number=15
HG002_chrY	Liftoff	gene	9438493	9444100	.	-	.	ID=hg002_chrY_paternal_201;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=11;copy_num_ID=REF.chrY.159_11
HG002_chrY	Liftoff	transcript	9438493	9444100	.	-	.	ID=hg002_chrY_paternal_201.1;Parent=hg002_chrY_paternal_201;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=11;gene_id=hg002_chrY_paternal_201;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_201.1;transcript_name=hg002_chrY_paternal_201.1
HG002_chrY	Liftoff	exon	9438493	9438552	.	-	.	Parent=hg002_chrY_paternal_201.1;exon_number=4;extra_copy_number=11
HG002_chrY	Liftoff	exon	9442104	9442262	.	-	.	Parent=hg002_chrY_paternal_201.1;exon_number=3;extra_copy_number=11
HG002_chrY	Liftoff	exon	9443767	9443912	.	-	.	Parent=hg002_chrY_paternal_201.1;exon_number=2;extra_copy_number=11
HG002_chrY	Liftoff	exon	9443999	9444100	.	-	.	Parent=hg002_chrY_paternal_201.1;exon_number=1;extra_copy_number=11
HG002_chrY	Liftoff	gene	9446715	9449529	.	+	.	ID=hg002_chrY_paternal_202;gene_name=TSPY9;gene_biotype=protein_coding;origin_ID=TSPY9;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=2;copy_num_ID=REF.chrY.158_2
HG002_chrY	Liftoff	transcript	9446715	9449529	.	+	.	ID=hg002_chrY_paternal_202.1;Parent=hg002_chrY_paternal_202;transcript_biotype=protein_coding;origin_ID=NM_001396063.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_202;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_202.1;transcript_name=hg002_chrY_paternal_202.1
HG002_chrY	Liftoff	exon	9446715	9447264	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9447872	9447949	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448078	9448189	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448291	9448436	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448543	9448624	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9449319	9449529	.	+	.	Parent=hg002_chrY_paternal_202.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9446761	9447264	.	+	0	Parent=hg002_chrY_paternal_202.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9447872	9447949	.	+	0	Parent=hg002_chrY_paternal_202.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448078	9448189	.	+	0	Parent=hg002_chrY_paternal_202.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448291	9448436	.	+	2	Parent=hg002_chrY_paternal_202.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448543	9448624	.	+	0	Parent=hg002_chrY_paternal_202.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9449319	9449341	.	+	2	Parent=hg002_chrY_paternal_202.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9446715	9449529	.	+	.	ID=hg002_chrY_paternal_202.2;Parent=hg002_chrY_paternal_202;transcript_biotype=protein_coding;origin_ID=XM_047442744.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_202;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_202.2;transcript_name=hg002_chrY_paternal_202.2
HG002_chrY	Liftoff	exon	9446715	9447264	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9447872	9447949	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448078	9448189	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448291	9448436	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9448532	9448624	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9449319	9449529	.	+	.	Parent=hg002_chrY_paternal_202.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9446761	9447264	.	+	0	Parent=hg002_chrY_paternal_202.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9447872	9447949	.	+	0	Parent=hg002_chrY_paternal_202.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448078	9448189	.	+	0	Parent=hg002_chrY_paternal_202.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448291	9448436	.	+	2	Parent=hg002_chrY_paternal_202.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9448532	9448594	.	+	0	Parent=hg002_chrY_paternal_202.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	gene	9458783	9464388	.	-	.	ID=hg002_chrY_paternal_203;gene_name=FAM197Y7;gene_biotype=lncRNA;origin_ID=FAM197Y7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.153_0
HG002_chrY	Liftoff	transcript	9458783	9464388	.	-	.	ID=hg002_chrY_paternal_203.1;Parent=hg002_chrY_paternal_203;transcript_biotype=lnc_RNA;origin_ID=NR_145460.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_203;gene_name=FAM197Y7;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_203.1;transcript_name=hg002_chrY_paternal_203.1
HG002_chrY	Liftoff	exon	9458783	9458842	.	-	.	Parent=hg002_chrY_paternal_203.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9462392	9462550	.	-	.	Parent=hg002_chrY_paternal_203.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9464055	9464200	.	-	.	Parent=hg002_chrY_paternal_203.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9464287	9464388	.	-	.	Parent=hg002_chrY_paternal_203.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9467001	9469797	.	+	.	ID=hg002_chrY_paternal_204;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=4;copy_num_ID=REF.chrY.152_4
HG002_chrY	Liftoff	transcript	9467001	9469797	.	+	.	ID=hg002_chrY_paternal_204.1;Parent=hg002_chrY_paternal_204;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_204;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_204.1;transcript_name=hg002_chrY_paternal_204.1
HG002_chrY	Liftoff	exon	9467001	9467532	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468140	9468217	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468346	9468457	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468559	9468704	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468811	9468892	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9469587	9469797	.	+	.	Parent=hg002_chrY_paternal_204.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9467047	9467532	.	+	0	Parent=hg002_chrY_paternal_204.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468140	9468217	.	+	0	Parent=hg002_chrY_paternal_204.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468346	9468457	.	+	0	Parent=hg002_chrY_paternal_204.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468559	9468704	.	+	2	Parent=hg002_chrY_paternal_204.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468811	9468892	.	+	0	Parent=hg002_chrY_paternal_204.1;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9469587	9469609	.	+	2	Parent=hg002_chrY_paternal_204.1;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9467001	9469797	.	+	.	ID=hg002_chrY_paternal_204.2;Parent=hg002_chrY_paternal_204;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_204;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_204.2;transcript_name=hg002_chrY_paternal_204.2
HG002_chrY	Liftoff	exon	9467001	9467532	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468140	9468217	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468346	9468457	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468559	9468704	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468800	9468892	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9469587	9469797	.	+	.	Parent=hg002_chrY_paternal_204.2;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9467047	9467532	.	+	0	Parent=hg002_chrY_paternal_204.2;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468140	9468217	.	+	0	Parent=hg002_chrY_paternal_204.2;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468346	9468457	.	+	0	Parent=hg002_chrY_paternal_204.2;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468559	9468704	.	+	2	Parent=hg002_chrY_paternal_204.2;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468800	9468862	.	+	0	Parent=hg002_chrY_paternal_204.2;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9467001	9469797	.	+	.	ID=hg002_chrY_paternal_204.3;Parent=hg002_chrY_paternal_204;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=4;manual=False;gene_id=hg002_chrY_paternal_204;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_204.3;transcript_name=hg002_chrY_paternal_204.3
HG002_chrY	Liftoff	exon	9467001	9467532	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468140	9468217	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468346	9468457	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468566	9468704	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468811	9468892	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9469587	9469797	.	+	.	Parent=hg002_chrY_paternal_204.3;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9467047	9467532	.	+	0	Parent=hg002_chrY_paternal_204.3;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468140	9468217	.	+	0	Parent=hg002_chrY_paternal_204.3;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468346	9468457	.	+	0	Parent=hg002_chrY_paternal_204.3;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468566	9468704	.	+	2	Parent=hg002_chrY_paternal_204.3;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	CDS	9468811	9468862	.	+	1	Parent=hg002_chrY_paternal_204.3;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	transcript	9467001	9469797	.	+	.	ID=hg002_chrY_paternal_204.4;Parent=hg002_chrY_paternal_204;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=4;gene_id=hg002_chrY_paternal_204;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_204.4;transcript_name=hg002_chrY_paternal_204.4
HG002_chrY	Liftoff	exon	9467001	9467532	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468140	9468217	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468346	9468457	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468566	9468704	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9468800	9468892	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=5;extra_copy_number=4
HG002_chrY	Liftoff	exon	9469587	9469797	.	+	.	Parent=hg002_chrY_paternal_204.4;exon_number=6;extra_copy_number=4
HG002_chrY	Liftoff	gene	9479067	9484672	.	-	.	ID=hg002_chrY_paternal_205;gene_name=FAM197Y5;gene_biotype=lncRNA;origin_ID=FAM197Y5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.154_0
HG002_chrY	Liftoff	transcript	9479067	9484672	.	-	.	ID=hg002_chrY_paternal_205.1;Parent=hg002_chrY_paternal_205;transcript_biotype=lnc_RNA;origin_ID=NR_046300.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_205;gene_name=FAM197Y5;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_205.1;transcript_name=hg002_chrY_paternal_205.1
HG002_chrY	Liftoff	exon	9479067	9479126	.	-	.	Parent=hg002_chrY_paternal_205.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9482682	9482840	.	-	.	Parent=hg002_chrY_paternal_205.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9484339	9484484	.	-	.	Parent=hg002_chrY_paternal_205.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9484571	9484672	.	-	.	Parent=hg002_chrY_paternal_205.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9487285	9490099	.	+	.	ID=hg002_chrY_paternal_206;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=2;copy_num_ID=REF.chrY.150_2
HG002_chrY	Liftoff	transcript	9487285	9490099	.	+	.	ID=hg002_chrY_paternal_206.1;Parent=hg002_chrY_paternal_206;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_206;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_206.1;transcript_name=hg002_chrY_paternal_206.1
HG002_chrY	Liftoff	exon	9487285	9487834	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488442	9488519	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488648	9488759	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488861	9489006	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489113	9489194	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489889	9490099	.	+	.	Parent=hg002_chrY_paternal_206.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9487331	9487834	.	+	0	Parent=hg002_chrY_paternal_206.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488442	9488519	.	+	0	Parent=hg002_chrY_paternal_206.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488648	9488759	.	+	0	Parent=hg002_chrY_paternal_206.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488861	9489006	.	+	2	Parent=hg002_chrY_paternal_206.1;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9489113	9489194	.	+	0	Parent=hg002_chrY_paternal_206.1;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9489889	9489911	.	+	2	Parent=hg002_chrY_paternal_206.1;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9487285	9490099	.	+	.	ID=hg002_chrY_paternal_206.2;Parent=hg002_chrY_paternal_206;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_206;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_206.2;transcript_name=hg002_chrY_paternal_206.2
HG002_chrY	Liftoff	exon	9487285	9487834	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488442	9488519	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488648	9488759	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488861	9489006	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489102	9489194	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489889	9490099	.	+	.	Parent=hg002_chrY_paternal_206.2;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9487331	9487834	.	+	0	Parent=hg002_chrY_paternal_206.2;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488442	9488519	.	+	0	Parent=hg002_chrY_paternal_206.2;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488648	9488759	.	+	0	Parent=hg002_chrY_paternal_206.2;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488861	9489006	.	+	2	Parent=hg002_chrY_paternal_206.2;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9489102	9489164	.	+	0	Parent=hg002_chrY_paternal_206.2;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9487285	9490099	.	+	.	ID=hg002_chrY_paternal_206.3;Parent=hg002_chrY_paternal_206;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=2;manual=False;gene_id=hg002_chrY_paternal_206;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_206.3;transcript_name=hg002_chrY_paternal_206.3
HG002_chrY	Liftoff	exon	9487285	9487834	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488442	9488519	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488648	9488759	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488868	9489006	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489113	9489194	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489889	9490099	.	+	.	Parent=hg002_chrY_paternal_206.3;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9487331	9487834	.	+	0	Parent=hg002_chrY_paternal_206.3;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488442	9488519	.	+	0	Parent=hg002_chrY_paternal_206.3;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488648	9488759	.	+	0	Parent=hg002_chrY_paternal_206.3;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9488868	9489006	.	+	2	Parent=hg002_chrY_paternal_206.3;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	CDS	9489113	9489164	.	+	1	Parent=hg002_chrY_paternal_206.3;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	transcript	9487285	9490099	.	+	.	ID=hg002_chrY_paternal_206.4;Parent=hg002_chrY_paternal_206;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=2;gene_id=hg002_chrY_paternal_206;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_206.4;transcript_name=hg002_chrY_paternal_206.4
HG002_chrY	Liftoff	exon	9487285	9487834	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488442	9488519	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488648	9488759	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	9488868	9489006	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=4;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489102	9489194	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=5;extra_copy_number=2
HG002_chrY	Liftoff	exon	9489889	9490099	.	+	.	Parent=hg002_chrY_paternal_206.4;exon_number=6;extra_copy_number=2
HG002_chrY	Liftoff	gene	9499357	9505043	.	-	.	ID=hg002_chrY_paternal_207;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=19;copy_num_ID=REF.chrY.160_19
HG002_chrY	Liftoff	transcript	9499357	9505043	.	-	.	ID=hg002_chrY_paternal_207.1;Parent=hg002_chrY_paternal_207;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=19;gene_id=hg002_chrY_paternal_207;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_207.1;transcript_name=hg002_chrY_paternal_207.1
HG002_chrY	Liftoff	exon	9499357	9499416	.	-	.	Parent=hg002_chrY_paternal_207.1;exon_number=4;extra_copy_number=19
HG002_chrY	Liftoff	exon	9502966	9503124	.	-	.	Parent=hg002_chrY_paternal_207.1;exon_number=3;extra_copy_number=19
HG002_chrY	Liftoff	exon	9504621	9504766	.	-	.	Parent=hg002_chrY_paternal_207.1;exon_number=2;extra_copy_number=19
HG002_chrY	Liftoff	exon	9504853	9505043	.	-	.	Parent=hg002_chrY_paternal_207.1;exon_number=1;extra_copy_number=19
HG002_chrY	Liftoff	gene	9507567	9510363	.	+	.	ID=hg002_chrY_paternal_208;gene_name=TSPY3;gene_biotype=protein_coding;origin_ID=TSPY3;coverage=1.0;sequence_ID=0.998;valid_ORFs=3;extra_copy_number=5;copy_num_ID=REF.chrY.152_5
HG002_chrY	Liftoff	transcript	9507567	9510363	.	+	.	ID=hg002_chrY_paternal_208.1;Parent=hg002_chrY_paternal_208;transcript_biotype=protein_coding;origin_ID=NM_001077697.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_208;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_208.1;transcript_name=hg002_chrY_paternal_208.1
HG002_chrY	Liftoff	exon	9507567	9508098	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508706	9508783	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508912	9509023	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509125	9509270	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509377	9509458	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9510153	9510363	.	+	.	Parent=hg002_chrY_paternal_208.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9507613	9508098	.	+	0	Parent=hg002_chrY_paternal_208.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508706	9508783	.	+	0	Parent=hg002_chrY_paternal_208.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508912	9509023	.	+	0	Parent=hg002_chrY_paternal_208.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509125	9509270	.	+	2	Parent=hg002_chrY_paternal_208.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509377	9509458	.	+	0	Parent=hg002_chrY_paternal_208.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9510153	9510175	.	+	2	Parent=hg002_chrY_paternal_208.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9507567	9510363	.	+	.	ID=hg002_chrY_paternal_208.2;Parent=hg002_chrY_paternal_208;transcript_biotype=protein_coding;origin_ID=XM_005272742.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_208;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_208.2;transcript_name=hg002_chrY_paternal_208.2
HG002_chrY	Liftoff	exon	9507567	9508098	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508706	9508783	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508912	9509023	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509125	9509270	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509366	9509458	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9510153	9510363	.	+	.	Parent=hg002_chrY_paternal_208.2;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9507613	9508098	.	+	0	Parent=hg002_chrY_paternal_208.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508706	9508783	.	+	0	Parent=hg002_chrY_paternal_208.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508912	9509023	.	+	0	Parent=hg002_chrY_paternal_208.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509125	9509270	.	+	2	Parent=hg002_chrY_paternal_208.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509366	9509428	.	+	0	Parent=hg002_chrY_paternal_208.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9507567	9510363	.	+	.	ID=hg002_chrY_paternal_208.3;Parent=hg002_chrY_paternal_208;transcript_biotype=protein_coding;origin_ID=XM_011544004.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_208;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_208.3;transcript_name=hg002_chrY_paternal_208.3
HG002_chrY	Liftoff	exon	9507567	9508098	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508706	9508783	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508912	9509023	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509132	9509270	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509377	9509458	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9510153	9510363	.	+	.	Parent=hg002_chrY_paternal_208.3;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9507613	9508098	.	+	0	Parent=hg002_chrY_paternal_208.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508706	9508783	.	+	0	Parent=hg002_chrY_paternal_208.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9508912	9509023	.	+	0	Parent=hg002_chrY_paternal_208.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509132	9509270	.	+	2	Parent=hg002_chrY_paternal_208.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9509377	9509428	.	+	1	Parent=hg002_chrY_paternal_208.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9507567	9510363	.	+	.	ID=hg002_chrY_paternal_208.4;Parent=hg002_chrY_paternal_208;transcript_biotype=transcript;origin_ID=XR_949063.3;extra_copy_number=5;gene_id=hg002_chrY_paternal_208;gene_name=TSPY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_208.4;transcript_name=hg002_chrY_paternal_208.4
HG002_chrY	Liftoff	exon	9507567	9508098	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508706	9508783	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9508912	9509023	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509132	9509270	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9509366	9509458	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9510153	9510363	.	+	.	Parent=hg002_chrY_paternal_208.4;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	gene	9519619	9525308	.	-	.	ID=hg002_chrY_paternal_209;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=22;copy_num_ID=REF.chrY.160_22
HG002_chrY	Liftoff	transcript	9519619	9525308	.	-	.	ID=hg002_chrY_paternal_209.1;Parent=hg002_chrY_paternal_209;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=22;gene_id=hg002_chrY_paternal_209;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_209.1;transcript_name=hg002_chrY_paternal_209.1
HG002_chrY	Liftoff	exon	9519619	9519678	.	-	.	Parent=hg002_chrY_paternal_209.1;exon_number=4;extra_copy_number=22
HG002_chrY	Liftoff	exon	9523233	9523391	.	-	.	Parent=hg002_chrY_paternal_209.1;exon_number=3;extra_copy_number=22
HG002_chrY	Liftoff	exon	9524886	9525031	.	-	.	Parent=hg002_chrY_paternal_209.1;exon_number=2;extra_copy_number=22
HG002_chrY	Liftoff	exon	9525118	9525308	.	-	.	Parent=hg002_chrY_paternal_209.1;exon_number=1;extra_copy_number=22
HG002_chrY	Liftoff	gene	9527832	9530646	.	+	.	ID=hg002_chrY_paternal_210;gene_name=TSPY9;gene_biotype=protein_coding;origin_ID=TSPY9;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=1;copy_num_ID=REF.chrY.158_1
HG002_chrY	Liftoff	transcript	9527832	9530646	.	+	.	ID=hg002_chrY_paternal_210.1;Parent=hg002_chrY_paternal_210;transcript_biotype=protein_coding;origin_ID=NM_001396063.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_210;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_210.1;transcript_name=hg002_chrY_paternal_210.1
HG002_chrY	Liftoff	exon	9527832	9528381	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9528989	9529066	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529195	9529306	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529408	9529553	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529660	9529741	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9530436	9530646	.	+	.	Parent=hg002_chrY_paternal_210.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9527878	9528381	.	+	0	Parent=hg002_chrY_paternal_210.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9528989	9529066	.	+	0	Parent=hg002_chrY_paternal_210.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529195	9529306	.	+	0	Parent=hg002_chrY_paternal_210.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529408	9529553	.	+	2	Parent=hg002_chrY_paternal_210.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529660	9529741	.	+	0	Parent=hg002_chrY_paternal_210.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9530436	9530458	.	+	2	Parent=hg002_chrY_paternal_210.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9527832	9530646	.	+	.	ID=hg002_chrY_paternal_210.2;Parent=hg002_chrY_paternal_210;transcript_biotype=protein_coding;origin_ID=XM_047442744.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_210;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_210.2;transcript_name=hg002_chrY_paternal_210.2
HG002_chrY	Liftoff	exon	9527832	9528381	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9528989	9529066	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529195	9529306	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529408	9529553	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9529649	9529741	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9530436	9530646	.	+	.	Parent=hg002_chrY_paternal_210.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9527878	9528381	.	+	0	Parent=hg002_chrY_paternal_210.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9528989	9529066	.	+	0	Parent=hg002_chrY_paternal_210.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529195	9529306	.	+	0	Parent=hg002_chrY_paternal_210.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529408	9529553	.	+	2	Parent=hg002_chrY_paternal_210.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9529649	9529711	.	+	0	Parent=hg002_chrY_paternal_210.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	gene	9539915	9545518	.	-	.	ID=hg002_chrY_paternal_211;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.159_1
HG002_chrY	Liftoff	transcript	9539915	9545518	.	-	.	ID=hg002_chrY_paternal_211.1;Parent=hg002_chrY_paternal_211;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=1;gene_id=hg002_chrY_paternal_211;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_211.1;transcript_name=hg002_chrY_paternal_211.1
HG002_chrY	Liftoff	exon	9539915	9539974	.	-	.	Parent=hg002_chrY_paternal_211.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9543526	9543684	.	-	.	Parent=hg002_chrY_paternal_211.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9545185	9545330	.	-	.	Parent=hg002_chrY_paternal_211.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9545417	9545518	.	-	.	Parent=hg002_chrY_paternal_211.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	9548131	9550927	.	+	.	ID=hg002_chrY_paternal_212;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=9;copy_num_ID=REF.chrY.162_9
HG002_chrY	Liftoff	transcript	9548131	9550927	.	+	.	ID=hg002_chrY_paternal_212.1;Parent=hg002_chrY_paternal_212;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=9;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_212;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_212.1;transcript_name=hg002_chrY_paternal_212.1
HG002_chrY	Liftoff	exon	9548131	9548662	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549270	9549347	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549476	9549587	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549689	9549834	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549941	9550022	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	exon	9550717	9550927	.	+	.	Parent=hg002_chrY_paternal_212.1;exon_number=6;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9548177	9548662	.	+	0	Parent=hg002_chrY_paternal_212.1;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549270	9549347	.	+	0	Parent=hg002_chrY_paternal_212.1;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549476	9549587	.	+	0	Parent=hg002_chrY_paternal_212.1;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549689	9549834	.	+	2	Parent=hg002_chrY_paternal_212.1;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549941	9550022	.	+	0	Parent=hg002_chrY_paternal_212.1;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9550717	9550739	.	+	2	Parent=hg002_chrY_paternal_212.1;exon_number=6;extra_copy_number=9
HG002_chrY	Liftoff	transcript	9548131	9550927	.	+	.	ID=hg002_chrY_paternal_212.2;Parent=hg002_chrY_paternal_212;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=9;manual=False;gene_id=hg002_chrY_paternal_212;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_212.2;transcript_name=hg002_chrY_paternal_212.2
HG002_chrY	Liftoff	exon	9548131	9548662	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549270	9549347	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549476	9549587	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549689	9549834	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549930	9550022	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	exon	9550717	9550927	.	+	.	Parent=hg002_chrY_paternal_212.2;exon_number=6;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9548177	9548662	.	+	0	Parent=hg002_chrY_paternal_212.2;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549270	9549347	.	+	0	Parent=hg002_chrY_paternal_212.2;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549476	9549587	.	+	0	Parent=hg002_chrY_paternal_212.2;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549689	9549834	.	+	2	Parent=hg002_chrY_paternal_212.2;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549930	9549992	.	+	0	Parent=hg002_chrY_paternal_212.2;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	transcript	9548131	9550927	.	+	.	ID=hg002_chrY_paternal_212.3;Parent=hg002_chrY_paternal_212;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=9;manual=False;gene_id=hg002_chrY_paternal_212;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_212.3;transcript_name=hg002_chrY_paternal_212.3
HG002_chrY	Liftoff	exon	9548131	9548662	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549270	9549347	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549476	9549587	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549696	9549834	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549941	9550022	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	exon	9550717	9550927	.	+	.	Parent=hg002_chrY_paternal_212.3;exon_number=6;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9548177	9548662	.	+	0	Parent=hg002_chrY_paternal_212.3;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549270	9549347	.	+	0	Parent=hg002_chrY_paternal_212.3;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549476	9549587	.	+	0	Parent=hg002_chrY_paternal_212.3;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549696	9549834	.	+	2	Parent=hg002_chrY_paternal_212.3;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	CDS	9549941	9549992	.	+	1	Parent=hg002_chrY_paternal_212.3;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	transcript	9548131	9550927	.	+	.	ID=hg002_chrY_paternal_212.4;Parent=hg002_chrY_paternal_212;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=9;gene_id=hg002_chrY_paternal_212;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_212.4;transcript_name=hg002_chrY_paternal_212.4
HG002_chrY	Liftoff	exon	9548131	9548662	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=1;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549270	9549347	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=2;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549476	9549587	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=3;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549696	9549834	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=4;extra_copy_number=9
HG002_chrY	Liftoff	exon	9549930	9550022	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=5;extra_copy_number=9
HG002_chrY	Liftoff	exon	9550717	9550927	.	+	.	Parent=hg002_chrY_paternal_212.4;exon_number=6;extra_copy_number=9
HG002_chrY	Liftoff	gene	9560214	9565906	.	-	.	ID=hg002_chrY_paternal_213;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=0.998;extra_copy_number=15;copy_num_ID=REF.chrY.160_15
HG002_chrY	Liftoff	transcript	9560214	9565906	.	-	.	ID=hg002_chrY_paternal_213.1;Parent=hg002_chrY_paternal_213;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=15;gene_id=hg002_chrY_paternal_213;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_213.1;transcript_name=hg002_chrY_paternal_213.1
HG002_chrY	Liftoff	exon	9560214	9560273	.	-	.	Parent=hg002_chrY_paternal_213.1;exon_number=4;extra_copy_number=15
HG002_chrY	Liftoff	exon	9563823	9563981	.	-	.	Parent=hg002_chrY_paternal_213.1;exon_number=3;extra_copy_number=15
HG002_chrY	Liftoff	exon	9565484	9565629	.	-	.	Parent=hg002_chrY_paternal_213.1;exon_number=2;extra_copy_number=15
HG002_chrY	Liftoff	exon	9565716	9565906	.	-	.	Parent=hg002_chrY_paternal_213.1;exon_number=1;extra_copy_number=15
HG002_chrY	Liftoff	gene	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.996;valid_ORFs=4;extra_copy_number=6;copy_num_ID=REF.chrY.156_6
HG002_chrY	Liftoff	transcript	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214.1;Parent=hg002_chrY_paternal_214;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_214.1;transcript_name=hg002_chrY_paternal_214.1
HG002_chrY	Liftoff	exon	9568430	9568961	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569569	9569646	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569775	9569886	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569988	9570133	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9570229	9570321	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9571016	9571226	.	+	.	Parent=hg002_chrY_paternal_214.1;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9568476	9568961	.	+	0	Parent=hg002_chrY_paternal_214.1;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569569	9569646	.	+	0	Parent=hg002_chrY_paternal_214.1;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569775	9569886	.	+	0	Parent=hg002_chrY_paternal_214.1;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569988	9570133	.	+	2	Parent=hg002_chrY_paternal_214.1;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9570229	9570291	.	+	0	Parent=hg002_chrY_paternal_214.1;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214.2;Parent=hg002_chrY_paternal_214;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_214.2;transcript_name=hg002_chrY_paternal_214.2
HG002_chrY	Liftoff	exon	9568430	9568562	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9568824	9568961	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569569	9569646	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569775	9569886	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569988	9570133	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9570240	9570321	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	exon	9571016	9571226	.	+	.	Parent=hg002_chrY_paternal_214.2;exon_number=7;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9568476	9568562	.	+	0	Parent=hg002_chrY_paternal_214.2;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9568824	9568961	.	+	0	Parent=hg002_chrY_paternal_214.2;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569569	9569646	.	+	0	Parent=hg002_chrY_paternal_214.2;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569775	9569886	.	+	0	Parent=hg002_chrY_paternal_214.2;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569988	9570133	.	+	2	Parent=hg002_chrY_paternal_214.2;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9570240	9570321	.	+	0	Parent=hg002_chrY_paternal_214.2;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9571016	9571038	.	+	2	Parent=hg002_chrY_paternal_214.2;exon_number=7;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214.3;Parent=hg002_chrY_paternal_214;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_214.3;transcript_name=hg002_chrY_paternal_214.3
HG002_chrY	Liftoff	exon	9568430	9568961	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569569	9569646	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569775	9569886	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569988	9570133	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9570240	9570321	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9571016	9571226	.	+	.	Parent=hg002_chrY_paternal_214.3;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9568476	9568961	.	+	0	Parent=hg002_chrY_paternal_214.3;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569569	9569646	.	+	0	Parent=hg002_chrY_paternal_214.3;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569775	9569886	.	+	0	Parent=hg002_chrY_paternal_214.3;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569988	9570133	.	+	2	Parent=hg002_chrY_paternal_214.3;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9570240	9570321	.	+	0	Parent=hg002_chrY_paternal_214.3;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9571016	9571038	.	+	2	Parent=hg002_chrY_paternal_214.3;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214.4;Parent=hg002_chrY_paternal_214;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=6;manual=False;gene_id=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_214.4;transcript_name=hg002_chrY_paternal_214.4
HG002_chrY	Liftoff	exon	9568430	9568961	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569569	9569646	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569775	9569886	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569995	9570133	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9570240	9570321	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9571016	9571226	.	+	.	Parent=hg002_chrY_paternal_214.4;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9568476	9568961	.	+	0	Parent=hg002_chrY_paternal_214.4;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569569	9569646	.	+	0	Parent=hg002_chrY_paternal_214.4;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569775	9569886	.	+	0	Parent=hg002_chrY_paternal_214.4;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9569995	9570133	.	+	2	Parent=hg002_chrY_paternal_214.4;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	CDS	9570240	9570291	.	+	1	Parent=hg002_chrY_paternal_214.4;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	transcript	9568430	9571226	.	+	.	ID=hg002_chrY_paternal_214.5;Parent=hg002_chrY_paternal_214;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=6;gene_id=hg002_chrY_paternal_214;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_214.5;transcript_name=hg002_chrY_paternal_214.5
HG002_chrY	Liftoff	exon	9568430	9568961	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=1;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569569	9569646	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=2;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569775	9569886	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=3;extra_copy_number=6
HG002_chrY	Liftoff	exon	9569995	9570133	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=4;extra_copy_number=6
HG002_chrY	Liftoff	exon	9570229	9570321	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=5;extra_copy_number=6
HG002_chrY	Liftoff	exon	9571016	9571226	.	+	.	Parent=hg002_chrY_paternal_214.5;exon_number=6;extra_copy_number=6
HG002_chrY	Liftoff	gene	9580519	9586212	.	-	.	ID=hg002_chrY_paternal_215;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=10;copy_num_ID=REF.chrY.160_10
HG002_chrY	Liftoff	transcript	9580519	9586212	.	-	.	ID=hg002_chrY_paternal_215.1;Parent=hg002_chrY_paternal_215;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=10;gene_id=hg002_chrY_paternal_215;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_215.1;transcript_name=hg002_chrY_paternal_215.1
HG002_chrY	Liftoff	exon	9580519	9580578	.	-	.	Parent=hg002_chrY_paternal_215.1;exon_number=4;extra_copy_number=10
HG002_chrY	Liftoff	exon	9584129	9584287	.	-	.	Parent=hg002_chrY_paternal_215.1;exon_number=3;extra_copy_number=10
HG002_chrY	Liftoff	exon	9585790	9585935	.	-	.	Parent=hg002_chrY_paternal_215.1;exon_number=2;extra_copy_number=10
HG002_chrY	Liftoff	exon	9586022	9586212	.	-	.	Parent=hg002_chrY_paternal_215.1;exon_number=1;extra_copy_number=10
HG002_chrY	Liftoff	gene	9588736	9591550	.	+	.	ID=hg002_chrY_paternal_216;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=1;copy_num_ID=REF.chrY.150_1
HG002_chrY	Liftoff	transcript	9588736	9591550	.	+	.	ID=hg002_chrY_paternal_216.1;Parent=hg002_chrY_paternal_216;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_216;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_216.1;transcript_name=hg002_chrY_paternal_216.1
HG002_chrY	Liftoff	exon	9588736	9589285	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9589893	9589970	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590099	9590210	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590312	9590457	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590564	9590645	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9591340	9591550	.	+	.	Parent=hg002_chrY_paternal_216.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9588782	9589285	.	+	0	Parent=hg002_chrY_paternal_216.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9589893	9589970	.	+	0	Parent=hg002_chrY_paternal_216.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590099	9590210	.	+	0	Parent=hg002_chrY_paternal_216.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590312	9590457	.	+	2	Parent=hg002_chrY_paternal_216.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590564	9590645	.	+	0	Parent=hg002_chrY_paternal_216.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9591340	9591362	.	+	2	Parent=hg002_chrY_paternal_216.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9588736	9591550	.	+	.	ID=hg002_chrY_paternal_216.2;Parent=hg002_chrY_paternal_216;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_216;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_216.2;transcript_name=hg002_chrY_paternal_216.2
HG002_chrY	Liftoff	exon	9588736	9589285	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9589893	9589970	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590099	9590210	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590312	9590457	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590553	9590645	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9591340	9591550	.	+	.	Parent=hg002_chrY_paternal_216.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9588782	9589285	.	+	0	Parent=hg002_chrY_paternal_216.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9589893	9589970	.	+	0	Parent=hg002_chrY_paternal_216.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590099	9590210	.	+	0	Parent=hg002_chrY_paternal_216.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590312	9590457	.	+	2	Parent=hg002_chrY_paternal_216.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590553	9590615	.	+	0	Parent=hg002_chrY_paternal_216.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9588736	9591550	.	+	.	ID=hg002_chrY_paternal_216.3;Parent=hg002_chrY_paternal_216;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_216;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_216.3;transcript_name=hg002_chrY_paternal_216.3
HG002_chrY	Liftoff	exon	9588736	9589285	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9589893	9589970	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590099	9590210	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590319	9590457	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590564	9590645	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9591340	9591550	.	+	.	Parent=hg002_chrY_paternal_216.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9588782	9589285	.	+	0	Parent=hg002_chrY_paternal_216.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9589893	9589970	.	+	0	Parent=hg002_chrY_paternal_216.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590099	9590210	.	+	0	Parent=hg002_chrY_paternal_216.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590319	9590457	.	+	2	Parent=hg002_chrY_paternal_216.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9590564	9590615	.	+	1	Parent=hg002_chrY_paternal_216.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9588736	9591550	.	+	.	ID=hg002_chrY_paternal_216.4;Parent=hg002_chrY_paternal_216;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_216;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_216.4;transcript_name=hg002_chrY_paternal_216.4
HG002_chrY	Liftoff	exon	9588736	9589285	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9589893	9589970	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590099	9590210	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590319	9590457	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9590553	9590645	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9591340	9591550	.	+	.	Parent=hg002_chrY_paternal_216.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	gene	9600820	9606431	.	-	.	ID=hg002_chrY_paternal_217;gene_name=FAM197Y6;gene_biotype=lncRNA;origin_ID=FAM197Y6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.155_0
HG002_chrY	Liftoff	transcript	9600820	9606431	.	-	.	ID=hg002_chrY_paternal_217.1;Parent=hg002_chrY_paternal_217;transcript_biotype=lnc_RNA;origin_ID=NR_145469.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_217;gene_name=FAM197Y6;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_217.1;transcript_name=hg002_chrY_paternal_217.1
HG002_chrY	Liftoff	exon	9600820	9600879	.	-	.	Parent=hg002_chrY_paternal_217.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9604435	9604593	.	-	.	Parent=hg002_chrY_paternal_217.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9606098	9606243	.	-	.	Parent=hg002_chrY_paternal_217.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9606330	9606431	.	-	.	Parent=hg002_chrY_paternal_217.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9609044	9611841	.	+	.	ID=hg002_chrY_paternal_218;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=7;copy_num_ID=REF.chrY.162_7
HG002_chrY	Liftoff	transcript	9609044	9611841	.	+	.	ID=hg002_chrY_paternal_218.1;Parent=hg002_chrY_paternal_218;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=7;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_218;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_218.1;transcript_name=hg002_chrY_paternal_218.1
HG002_chrY	Liftoff	exon	9609044	9609575	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610183	9610260	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610389	9610500	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610602	9610747	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610854	9610935	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	exon	9611630	9611841	.	+	.	Parent=hg002_chrY_paternal_218.1;exon_number=6;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9609090	9609575	.	+	0	Parent=hg002_chrY_paternal_218.1;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610183	9610260	.	+	0	Parent=hg002_chrY_paternal_218.1;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610389	9610500	.	+	0	Parent=hg002_chrY_paternal_218.1;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610602	9610747	.	+	2	Parent=hg002_chrY_paternal_218.1;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610854	9610935	.	+	0	Parent=hg002_chrY_paternal_218.1;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9611630	9611652	.	+	2	Parent=hg002_chrY_paternal_218.1;exon_number=6;extra_copy_number=7
HG002_chrY	Liftoff	transcript	9609044	9611841	.	+	.	ID=hg002_chrY_paternal_218.2;Parent=hg002_chrY_paternal_218;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=7;manual=False;gene_id=hg002_chrY_paternal_218;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_218.2;transcript_name=hg002_chrY_paternal_218.2
HG002_chrY	Liftoff	exon	9609044	9609575	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610183	9610260	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610389	9610500	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610602	9610747	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610843	9610935	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	exon	9611630	9611841	.	+	.	Parent=hg002_chrY_paternal_218.2;exon_number=6;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9609090	9609575	.	+	0	Parent=hg002_chrY_paternal_218.2;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610183	9610260	.	+	0	Parent=hg002_chrY_paternal_218.2;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610389	9610500	.	+	0	Parent=hg002_chrY_paternal_218.2;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610602	9610747	.	+	2	Parent=hg002_chrY_paternal_218.2;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610843	9610905	.	+	0	Parent=hg002_chrY_paternal_218.2;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	transcript	9609044	9611841	.	+	.	ID=hg002_chrY_paternal_218.3;Parent=hg002_chrY_paternal_218;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=7;manual=False;gene_id=hg002_chrY_paternal_218;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_218.3;transcript_name=hg002_chrY_paternal_218.3
HG002_chrY	Liftoff	exon	9609044	9609575	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610183	9610260	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610389	9610500	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610609	9610747	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610854	9610935	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	exon	9611630	9611841	.	+	.	Parent=hg002_chrY_paternal_218.3;exon_number=6;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9609090	9609575	.	+	0	Parent=hg002_chrY_paternal_218.3;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610183	9610260	.	+	0	Parent=hg002_chrY_paternal_218.3;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610389	9610500	.	+	0	Parent=hg002_chrY_paternal_218.3;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610609	9610747	.	+	2	Parent=hg002_chrY_paternal_218.3;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	CDS	9610854	9610905	.	+	1	Parent=hg002_chrY_paternal_218.3;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	transcript	9609044	9611841	.	+	.	ID=hg002_chrY_paternal_218.4;Parent=hg002_chrY_paternal_218;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=7;gene_id=hg002_chrY_paternal_218;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_218.4;transcript_name=hg002_chrY_paternal_218.4
HG002_chrY	Liftoff	exon	9609044	9609575	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610183	9610260	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610389	9610500	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610609	9610747	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	9610843	9610935	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=5;extra_copy_number=7
HG002_chrY	Liftoff	exon	9611630	9611841	.	+	.	Parent=hg002_chrY_paternal_218.4;exon_number=6;extra_copy_number=7
HG002_chrY	Liftoff	gene	9621143	9626837	.	-	.	ID=hg002_chrY_paternal_219;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=7;copy_num_ID=REF.chrY.160_7
HG002_chrY	Liftoff	transcript	9621143	9626837	.	-	.	ID=hg002_chrY_paternal_219.1;Parent=hg002_chrY_paternal_219;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=7;gene_id=hg002_chrY_paternal_219;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_219.1;transcript_name=hg002_chrY_paternal_219.1
HG002_chrY	Liftoff	exon	9621143	9621202	.	-	.	Parent=hg002_chrY_paternal_219.1;exon_number=4;extra_copy_number=7
HG002_chrY	Liftoff	exon	9624754	9624912	.	-	.	Parent=hg002_chrY_paternal_219.1;exon_number=3;extra_copy_number=7
HG002_chrY	Liftoff	exon	9626415	9626560	.	-	.	Parent=hg002_chrY_paternal_219.1;exon_number=2;extra_copy_number=7
HG002_chrY	Liftoff	exon	9626647	9626837	.	-	.	Parent=hg002_chrY_paternal_219.1;exon_number=1;extra_copy_number=7
HG002_chrY	Liftoff	gene	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=1.0;valid_ORFs=4;extra_copy_number=0;copy_num_ID=REF.chrY.156_0
HG002_chrY	Liftoff	transcript	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220.1;Parent=hg002_chrY_paternal_220;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_220.1;transcript_name=hg002_chrY_paternal_220.1
HG002_chrY	Liftoff	exon	9629362	9629893	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630501	9630578	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630707	9630818	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630920	9631065	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631161	9631253	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631948	9632158	.	+	.	Parent=hg002_chrY_paternal_220.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9629408	9629893	.	+	0	Parent=hg002_chrY_paternal_220.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630501	9630578	.	+	0	Parent=hg002_chrY_paternal_220.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630707	9630818	.	+	0	Parent=hg002_chrY_paternal_220.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630920	9631065	.	+	2	Parent=hg002_chrY_paternal_220.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631161	9631223	.	+	0	Parent=hg002_chrY_paternal_220.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220.2;Parent=hg002_chrY_paternal_220;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_220.2;transcript_name=hg002_chrY_paternal_220.2
HG002_chrY	Liftoff	exon	9629362	9629494	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9629756	9629893	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630501	9630578	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630707	9630818	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630920	9631065	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631172	9631253	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631948	9632158	.	+	.	Parent=hg002_chrY_paternal_220.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9629408	9629494	.	+	0	Parent=hg002_chrY_paternal_220.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9629756	9629893	.	+	0	Parent=hg002_chrY_paternal_220.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630501	9630578	.	+	0	Parent=hg002_chrY_paternal_220.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630707	9630818	.	+	0	Parent=hg002_chrY_paternal_220.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630920	9631065	.	+	2	Parent=hg002_chrY_paternal_220.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631172	9631253	.	+	0	Parent=hg002_chrY_paternal_220.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631948	9631970	.	+	2	Parent=hg002_chrY_paternal_220.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220.3;Parent=hg002_chrY_paternal_220;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_220.3;transcript_name=hg002_chrY_paternal_220.3
HG002_chrY	Liftoff	exon	9629362	9629893	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630501	9630578	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630707	9630818	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630920	9631065	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631172	9631253	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631948	9632158	.	+	.	Parent=hg002_chrY_paternal_220.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9629408	9629893	.	+	0	Parent=hg002_chrY_paternal_220.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630501	9630578	.	+	0	Parent=hg002_chrY_paternal_220.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630707	9630818	.	+	0	Parent=hg002_chrY_paternal_220.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630920	9631065	.	+	2	Parent=hg002_chrY_paternal_220.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631172	9631253	.	+	0	Parent=hg002_chrY_paternal_220.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631948	9631970	.	+	2	Parent=hg002_chrY_paternal_220.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220.4;Parent=hg002_chrY_paternal_220;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_220.4;transcript_name=hg002_chrY_paternal_220.4
HG002_chrY	Liftoff	exon	9629362	9629893	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630501	9630578	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630707	9630818	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630927	9631065	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631172	9631253	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631948	9632158	.	+	.	Parent=hg002_chrY_paternal_220.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9629408	9629893	.	+	0	Parent=hg002_chrY_paternal_220.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630501	9630578	.	+	0	Parent=hg002_chrY_paternal_220.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630707	9630818	.	+	0	Parent=hg002_chrY_paternal_220.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9630927	9631065	.	+	2	Parent=hg002_chrY_paternal_220.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9631172	9631223	.	+	1	Parent=hg002_chrY_paternal_220.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9629362	9632158	.	+	.	ID=hg002_chrY_paternal_220.5;Parent=hg002_chrY_paternal_220;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_220;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_220.5;transcript_name=hg002_chrY_paternal_220.5
HG002_chrY	Liftoff	exon	9629362	9629893	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630501	9630578	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630707	9630818	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9630927	9631065	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631161	9631253	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9631948	9632158	.	+	.	Parent=hg002_chrY_paternal_220.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	9641447	9647137	.	-	.	ID=hg002_chrY_paternal_221;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=14;copy_num_ID=REF.chrY.160_14
HG002_chrY	Liftoff	transcript	9641447	9647137	.	-	.	ID=hg002_chrY_paternal_221.1;Parent=hg002_chrY_paternal_221;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=14;gene_id=hg002_chrY_paternal_221;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_221.1;transcript_name=hg002_chrY_paternal_221.1
HG002_chrY	Liftoff	exon	9641447	9641506	.	-	.	Parent=hg002_chrY_paternal_221.1;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9645056	9645214	.	-	.	Parent=hg002_chrY_paternal_221.1;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9646715	9646860	.	-	.	Parent=hg002_chrY_paternal_221.1;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9646947	9647137	.	-	.	Parent=hg002_chrY_paternal_221.1;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	gene	9649661	9652475	.	+	.	ID=hg002_chrY_paternal_222;gene_name=TSPY4;gene_biotype=protein_coding;origin_ID=TSPY4;coverage=1.0;sequence_ID=0.998;valid_ORFs=3;extra_copy_number=5;copy_num_ID=REF.chrY.150_5
HG002_chrY	Liftoff	transcript	9649661	9652475	.	+	.	ID=hg002_chrY_paternal_222.1;Parent=hg002_chrY_paternal_222;transcript_biotype=protein_coding;origin_ID=NM_001164471.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_222;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_222.1;transcript_name=hg002_chrY_paternal_222.1
HG002_chrY	Liftoff	exon	9649661	9650210	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9650818	9650895	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651024	9651135	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651237	9651382	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651489	9651570	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9652265	9652475	.	+	.	Parent=hg002_chrY_paternal_222.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9649707	9650210	.	+	0	Parent=hg002_chrY_paternal_222.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9650818	9650895	.	+	0	Parent=hg002_chrY_paternal_222.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651024	9651135	.	+	0	Parent=hg002_chrY_paternal_222.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651237	9651382	.	+	2	Parent=hg002_chrY_paternal_222.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651489	9651570	.	+	0	Parent=hg002_chrY_paternal_222.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9652265	9652287	.	+	2	Parent=hg002_chrY_paternal_222.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9649661	9652475	.	+	.	ID=hg002_chrY_paternal_222.2;Parent=hg002_chrY_paternal_222;transcript_biotype=protein_coding;origin_ID=XM_005272743.5;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_222;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_222.2;transcript_name=hg002_chrY_paternal_222.2
HG002_chrY	Liftoff	exon	9649661	9650210	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9650818	9650895	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651024	9651135	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651237	9651382	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651478	9651570	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9652265	9652475	.	+	.	Parent=hg002_chrY_paternal_222.2;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9649707	9650210	.	+	0	Parent=hg002_chrY_paternal_222.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9650818	9650895	.	+	0	Parent=hg002_chrY_paternal_222.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651024	9651135	.	+	0	Parent=hg002_chrY_paternal_222.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651237	9651382	.	+	2	Parent=hg002_chrY_paternal_222.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651478	9651540	.	+	0	Parent=hg002_chrY_paternal_222.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9649661	9652475	.	+	.	ID=hg002_chrY_paternal_222.3;Parent=hg002_chrY_paternal_222;transcript_biotype=protein_coding;origin_ID=XM_017030065.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_222;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_222.3;transcript_name=hg002_chrY_paternal_222.3
HG002_chrY	Liftoff	exon	9649661	9650210	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9650818	9650895	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651024	9651135	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651244	9651382	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651489	9651570	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9652265	9652475	.	+	.	Parent=hg002_chrY_paternal_222.3;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9649707	9650210	.	+	0	Parent=hg002_chrY_paternal_222.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9650818	9650895	.	+	0	Parent=hg002_chrY_paternal_222.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651024	9651135	.	+	0	Parent=hg002_chrY_paternal_222.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651244	9651382	.	+	2	Parent=hg002_chrY_paternal_222.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9651489	9651540	.	+	1	Parent=hg002_chrY_paternal_222.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9649661	9652475	.	+	.	ID=hg002_chrY_paternal_222.4;Parent=hg002_chrY_paternal_222;transcript_biotype=transcript;origin_ID=XR_001756006.2;extra_copy_number=5;gene_id=hg002_chrY_paternal_222;gene_name=TSPY4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_222.4;transcript_name=hg002_chrY_paternal_222.4
HG002_chrY	Liftoff	exon	9649661	9650210	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9650818	9650895	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651024	9651135	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651244	9651382	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9651478	9651570	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9652265	9652475	.	+	.	Parent=hg002_chrY_paternal_222.4;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	gene	9661758	9667362	.	-	.	ID=hg002_chrY_paternal_223;gene_name=FAM197Y4;gene_biotype=lncRNA;origin_ID=FAM197Y4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.157_0
HG002_chrY	Liftoff	transcript	9661758	9667362	.	-	.	ID=hg002_chrY_paternal_223.1;Parent=hg002_chrY_paternal_223;transcript_biotype=lnc_RNA;origin_ID=NR_145470.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_223;gene_name=FAM197Y4;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_223.1;transcript_name=hg002_chrY_paternal_223.1
HG002_chrY	Liftoff	exon	9661758	9661817	.	-	.	Parent=hg002_chrY_paternal_223.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9665372	9665530	.	-	.	Parent=hg002_chrY_paternal_223.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9667029	9667174	.	-	.	Parent=hg002_chrY_paternal_223.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9667261	9667362	.	-	.	Parent=hg002_chrY_paternal_223.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9669975	9672789	.	+	.	ID=hg002_chrY_paternal_224;gene_name=TSPY9;gene_biotype=protein_coding;origin_ID=TSPY9;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.158_0
HG002_chrY	Liftoff	transcript	9669975	9672789	.	+	.	ID=hg002_chrY_paternal_224.1;Parent=hg002_chrY_paternal_224;transcript_biotype=protein_coding;origin_ID=NM_001396063.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_224;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_224.1;transcript_name=hg002_chrY_paternal_224.1
HG002_chrY	Liftoff	exon	9669975	9670524	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671132	9671209	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671338	9671449	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671551	9671696	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671803	9671884	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9672579	9672789	.	+	.	Parent=hg002_chrY_paternal_224.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9670021	9670524	.	+	0	Parent=hg002_chrY_paternal_224.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671132	9671209	.	+	0	Parent=hg002_chrY_paternal_224.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671338	9671449	.	+	0	Parent=hg002_chrY_paternal_224.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671551	9671696	.	+	2	Parent=hg002_chrY_paternal_224.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671803	9671884	.	+	0	Parent=hg002_chrY_paternal_224.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9672579	9672601	.	+	2	Parent=hg002_chrY_paternal_224.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9669975	9672789	.	+	.	ID=hg002_chrY_paternal_224.2;Parent=hg002_chrY_paternal_224;transcript_biotype=protein_coding;origin_ID=XM_047442744.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_224;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_224.2;transcript_name=hg002_chrY_paternal_224.2
HG002_chrY	Liftoff	exon	9669975	9670524	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671132	9671209	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671338	9671449	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671551	9671696	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9671792	9671884	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9672579	9672789	.	+	.	Parent=hg002_chrY_paternal_224.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9670021	9670524	.	+	0	Parent=hg002_chrY_paternal_224.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671132	9671209	.	+	0	Parent=hg002_chrY_paternal_224.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671338	9671449	.	+	0	Parent=hg002_chrY_paternal_224.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671551	9671696	.	+	2	Parent=hg002_chrY_paternal_224.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9671792	9671854	.	+	0	Parent=hg002_chrY_paternal_224.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	9682059	9687664	.	-	.	ID=hg002_chrY_paternal_225;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.159_0
HG002_chrY	Liftoff	transcript	9682059	9687664	.	-	.	ID=hg002_chrY_paternal_225.1;Parent=hg002_chrY_paternal_225;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_225;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_225.1;transcript_name=hg002_chrY_paternal_225.1
HG002_chrY	Liftoff	exon	9682059	9682118	.	-	.	Parent=hg002_chrY_paternal_225.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9685670	9685828	.	-	.	Parent=hg002_chrY_paternal_225.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9687331	9687476	.	-	.	Parent=hg002_chrY_paternal_225.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9687563	9687664	.	-	.	Parent=hg002_chrY_paternal_225.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9690273	9693069	.	+	.	ID=hg002_chrY_paternal_226;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.999;valid_ORFs=3;extra_copy_number=14;copy_num_ID=REF.chrY.162_14
HG002_chrY	Liftoff	transcript	9690273	9693069	.	+	.	ID=hg002_chrY_paternal_226.1;Parent=hg002_chrY_paternal_226;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=14;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_226;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_226.1;transcript_name=hg002_chrY_paternal_226.1
HG002_chrY	Liftoff	exon	9690273	9690804	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691412	9691489	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691618	9691729	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691831	9691976	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692083	9692164	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692859	9693069	.	+	.	Parent=hg002_chrY_paternal_226.1;exon_number=6;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9690319	9690804	.	+	0	Parent=hg002_chrY_paternal_226.1;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691412	9691489	.	+	0	Parent=hg002_chrY_paternal_226.1;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691618	9691729	.	+	0	Parent=hg002_chrY_paternal_226.1;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691831	9691976	.	+	2	Parent=hg002_chrY_paternal_226.1;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9692083	9692164	.	+	0	Parent=hg002_chrY_paternal_226.1;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9692859	9692881	.	+	2	Parent=hg002_chrY_paternal_226.1;exon_number=6;extra_copy_number=14
HG002_chrY	Liftoff	transcript	9690273	9693069	.	+	.	ID=hg002_chrY_paternal_226.2;Parent=hg002_chrY_paternal_226;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=14;manual=False;gene_id=hg002_chrY_paternal_226;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_226.2;transcript_name=hg002_chrY_paternal_226.2
HG002_chrY	Liftoff	exon	9690273	9690804	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691412	9691489	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691618	9691729	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691831	9691976	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692072	9692164	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692859	9693069	.	+	.	Parent=hg002_chrY_paternal_226.2;exon_number=6;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9690319	9690804	.	+	0	Parent=hg002_chrY_paternal_226.2;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691412	9691489	.	+	0	Parent=hg002_chrY_paternal_226.2;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691618	9691729	.	+	0	Parent=hg002_chrY_paternal_226.2;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691831	9691976	.	+	2	Parent=hg002_chrY_paternal_226.2;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9692072	9692134	.	+	0	Parent=hg002_chrY_paternal_226.2;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	transcript	9690273	9693069	.	+	.	ID=hg002_chrY_paternal_226.3;Parent=hg002_chrY_paternal_226;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=14;manual=False;gene_id=hg002_chrY_paternal_226;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_226.3;transcript_name=hg002_chrY_paternal_226.3
HG002_chrY	Liftoff	exon	9690273	9690804	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691412	9691489	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691618	9691729	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691838	9691976	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692083	9692164	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692859	9693069	.	+	.	Parent=hg002_chrY_paternal_226.3;exon_number=6;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9690319	9690804	.	+	0	Parent=hg002_chrY_paternal_226.3;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691412	9691489	.	+	0	Parent=hg002_chrY_paternal_226.3;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691618	9691729	.	+	0	Parent=hg002_chrY_paternal_226.3;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9691838	9691976	.	+	2	Parent=hg002_chrY_paternal_226.3;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	CDS	9692083	9692134	.	+	1	Parent=hg002_chrY_paternal_226.3;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	transcript	9690273	9693069	.	+	.	ID=hg002_chrY_paternal_226.4;Parent=hg002_chrY_paternal_226;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=14;gene_id=hg002_chrY_paternal_226;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_226.4;transcript_name=hg002_chrY_paternal_226.4
HG002_chrY	Liftoff	exon	9690273	9690804	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691412	9691489	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691618	9691729	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9691838	9691976	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692072	9692164	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=5;extra_copy_number=14
HG002_chrY	Liftoff	exon	9692859	9693069	.	+	.	Parent=hg002_chrY_paternal_226.4;exon_number=6;extra_copy_number=14
HG002_chrY	Liftoff	gene	9702343	9708036	.	-	.	ID=hg002_chrY_paternal_227;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.160_0
HG002_chrY	Liftoff	transcript	9702343	9708036	.	-	.	ID=hg002_chrY_paternal_227.1;Parent=hg002_chrY_paternal_227;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_227;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_227.1;transcript_name=hg002_chrY_paternal_227.1
HG002_chrY	Liftoff	exon	9702343	9702402	.	-	.	Parent=hg002_chrY_paternal_227.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9705953	9706111	.	-	.	Parent=hg002_chrY_paternal_227.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9707614	9707759	.	-	.	Parent=hg002_chrY_paternal_227.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9707846	9708036	.	-	.	Parent=hg002_chrY_paternal_227.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9710560	9713357	.	+	.	ID=hg002_chrY_paternal_228;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.998;valid_ORFs=3;extra_copy_number=13;copy_num_ID=REF.chrY.162_13
HG002_chrY	Liftoff	transcript	9710560	9713357	.	+	.	ID=hg002_chrY_paternal_228.1;Parent=hg002_chrY_paternal_228;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=False;valid_ORF=True;extra_copy_number=13;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_228;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_228.1;transcript_name=hg002_chrY_paternal_228.1
HG002_chrY	Liftoff	exon	9710560	9711091	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711699	9711776	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711905	9712016	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712118	9712263	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712370	9712451	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	exon	9713146	9713357	.	+	.	Parent=hg002_chrY_paternal_228.1;exon_number=6;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9710606	9711091	.	+	0	Parent=hg002_chrY_paternal_228.1;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711699	9711776	.	+	0	Parent=hg002_chrY_paternal_228.1;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711905	9712016	.	+	0	Parent=hg002_chrY_paternal_228.1;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712118	9712263	.	+	2	Parent=hg002_chrY_paternal_228.1;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712370	9712451	.	+	0	Parent=hg002_chrY_paternal_228.1;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9713146	9713168	.	+	2	Parent=hg002_chrY_paternal_228.1;exon_number=6;extra_copy_number=13
HG002_chrY	Liftoff	transcript	9710560	9713357	.	+	.	ID=hg002_chrY_paternal_228.2;Parent=hg002_chrY_paternal_228;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=False;valid_ORF=True;extra_copy_number=13;manual=False;gene_id=hg002_chrY_paternal_228;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_228.2;transcript_name=hg002_chrY_paternal_228.2
HG002_chrY	Liftoff	exon	9710560	9711091	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711699	9711776	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711905	9712016	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712118	9712263	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712359	9712451	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	exon	9713146	9713357	.	+	.	Parent=hg002_chrY_paternal_228.2;exon_number=6;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9710606	9711091	.	+	0	Parent=hg002_chrY_paternal_228.2;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711699	9711776	.	+	0	Parent=hg002_chrY_paternal_228.2;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711905	9712016	.	+	0	Parent=hg002_chrY_paternal_228.2;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712118	9712263	.	+	2	Parent=hg002_chrY_paternal_228.2;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712359	9712421	.	+	0	Parent=hg002_chrY_paternal_228.2;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	transcript	9710560	9713357	.	+	.	ID=hg002_chrY_paternal_228.3;Parent=hg002_chrY_paternal_228;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=13;manual=False;gene_id=hg002_chrY_paternal_228;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_228.3;transcript_name=hg002_chrY_paternal_228.3
HG002_chrY	Liftoff	exon	9710560	9711091	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711699	9711776	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711905	9712016	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712125	9712263	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712370	9712451	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	exon	9713146	9713357	.	+	.	Parent=hg002_chrY_paternal_228.3;exon_number=6;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9710606	9711091	.	+	0	Parent=hg002_chrY_paternal_228.3;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711699	9711776	.	+	0	Parent=hg002_chrY_paternal_228.3;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9711905	9712016	.	+	0	Parent=hg002_chrY_paternal_228.3;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712125	9712263	.	+	2	Parent=hg002_chrY_paternal_228.3;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	CDS	9712370	9712421	.	+	1	Parent=hg002_chrY_paternal_228.3;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	transcript	9710560	9713357	.	+	.	ID=hg002_chrY_paternal_228.4;Parent=hg002_chrY_paternal_228;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=13;gene_id=hg002_chrY_paternal_228;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_228.4;transcript_name=hg002_chrY_paternal_228.4
HG002_chrY	Liftoff	exon	9710560	9711091	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711699	9711776	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9711905	9712016	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712125	9712263	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9712359	9712451	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=5;extra_copy_number=13
HG002_chrY	Liftoff	exon	9713146	9713357	.	+	.	Parent=hg002_chrY_paternal_228.4;exon_number=6;extra_copy_number=13
HG002_chrY	Liftoff	gene	9722651	9728333	.	-	.	ID=hg002_chrY_paternal_229;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=17;copy_num_ID=REF.chrY.160_17
HG002_chrY	Liftoff	transcript	9722651	9728333	.	-	.	ID=hg002_chrY_paternal_229.1;Parent=hg002_chrY_paternal_229;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=17;gene_id=hg002_chrY_paternal_229;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_229.1;transcript_name=hg002_chrY_paternal_229.1
HG002_chrY	Liftoff	exon	9722651	9722710	.	-	.	Parent=hg002_chrY_paternal_229.1;exon_number=4;extra_copy_number=17
HG002_chrY	Liftoff	exon	9726258	9726416	.	-	.	Parent=hg002_chrY_paternal_229.1;exon_number=3;extra_copy_number=17
HG002_chrY	Liftoff	exon	9727911	9728056	.	-	.	Parent=hg002_chrY_paternal_229.1;exon_number=2;extra_copy_number=17
HG002_chrY	Liftoff	exon	9728143	9728333	.	-	.	Parent=hg002_chrY_paternal_229.1;exon_number=1;extra_copy_number=17
HG002_chrY	Liftoff	gene	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.999;valid_ORFs=4;extra_copy_number=1;copy_num_ID=REF.chrY.156_1
HG002_chrY	Liftoff	transcript	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230.1;Parent=hg002_chrY_paternal_230;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_230.1;transcript_name=hg002_chrY_paternal_230.1
HG002_chrY	Liftoff	exon	9730858	9731389	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731997	9732074	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732203	9732314	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732416	9732561	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732657	9732749	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9733444	9733654	.	+	.	Parent=hg002_chrY_paternal_230.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9730904	9731389	.	+	0	Parent=hg002_chrY_paternal_230.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9731997	9732074	.	+	0	Parent=hg002_chrY_paternal_230.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732203	9732314	.	+	0	Parent=hg002_chrY_paternal_230.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732416	9732561	.	+	2	Parent=hg002_chrY_paternal_230.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732657	9732719	.	+	0	Parent=hg002_chrY_paternal_230.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230.2;Parent=hg002_chrY_paternal_230;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_230.2;transcript_name=hg002_chrY_paternal_230.2
HG002_chrY	Liftoff	exon	9730858	9730990	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731252	9731389	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731997	9732074	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732203	9732314	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732416	9732561	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732668	9732749	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	exon	9733444	9733654	.	+	.	Parent=hg002_chrY_paternal_230.2;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9730904	9730990	.	+	0	Parent=hg002_chrY_paternal_230.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9731252	9731389	.	+	0	Parent=hg002_chrY_paternal_230.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9731997	9732074	.	+	0	Parent=hg002_chrY_paternal_230.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732203	9732314	.	+	0	Parent=hg002_chrY_paternal_230.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732416	9732561	.	+	2	Parent=hg002_chrY_paternal_230.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732668	9732749	.	+	0	Parent=hg002_chrY_paternal_230.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9733444	9733466	.	+	2	Parent=hg002_chrY_paternal_230.2;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230.3;Parent=hg002_chrY_paternal_230;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_230.3;transcript_name=hg002_chrY_paternal_230.3
HG002_chrY	Liftoff	exon	9730858	9731389	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731997	9732074	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732203	9732314	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732416	9732561	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732668	9732749	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9733444	9733654	.	+	.	Parent=hg002_chrY_paternal_230.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9730904	9731389	.	+	0	Parent=hg002_chrY_paternal_230.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9731997	9732074	.	+	0	Parent=hg002_chrY_paternal_230.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732203	9732314	.	+	0	Parent=hg002_chrY_paternal_230.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732416	9732561	.	+	2	Parent=hg002_chrY_paternal_230.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732668	9732749	.	+	0	Parent=hg002_chrY_paternal_230.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9733444	9733466	.	+	2	Parent=hg002_chrY_paternal_230.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230.4;Parent=hg002_chrY_paternal_230;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_230.4;transcript_name=hg002_chrY_paternal_230.4
HG002_chrY	Liftoff	exon	9730858	9731389	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731997	9732074	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732203	9732314	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732423	9732561	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732668	9732749	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9733444	9733654	.	+	.	Parent=hg002_chrY_paternal_230.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9730904	9731389	.	+	0	Parent=hg002_chrY_paternal_230.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9731997	9732074	.	+	0	Parent=hg002_chrY_paternal_230.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732203	9732314	.	+	0	Parent=hg002_chrY_paternal_230.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732423	9732561	.	+	2	Parent=hg002_chrY_paternal_230.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	9732668	9732719	.	+	1	Parent=hg002_chrY_paternal_230.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	transcript	9730858	9733654	.	+	.	ID=hg002_chrY_paternal_230.5;Parent=hg002_chrY_paternal_230;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_230;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_230.5;transcript_name=hg002_chrY_paternal_230.5
HG002_chrY	Liftoff	exon	9730858	9731389	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	9731997	9732074	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732203	9732314	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732423	9732561	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	9732657	9732749	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	9733444	9733654	.	+	.	Parent=hg002_chrY_paternal_230.5;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	gene	9742959	9748644	.	-	.	ID=hg002_chrY_paternal_231;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=4;copy_num_ID=REF.chrY.160_4
HG002_chrY	Liftoff	transcript	9742959	9748644	.	-	.	ID=hg002_chrY_paternal_231.1;Parent=hg002_chrY_paternal_231;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=4;gene_id=hg002_chrY_paternal_231;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_231.1;transcript_name=hg002_chrY_paternal_231.1
HG002_chrY	Liftoff	exon	9742959	9743018	.	-	.	Parent=hg002_chrY_paternal_231.1;exon_number=4;extra_copy_number=4
HG002_chrY	Liftoff	exon	9746569	9746727	.	-	.	Parent=hg002_chrY_paternal_231.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	9748222	9748367	.	-	.	Parent=hg002_chrY_paternal_231.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	9748454	9748644	.	-	.	Parent=hg002_chrY_paternal_231.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	gene	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;origin_ID=TSPY1;coverage=1.0;sequence_ID=0.996;valid_ORFs=4;extra_copy_number=5;copy_num_ID=REF.chrY.156_5
HG002_chrY	Liftoff	transcript	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232.1;Parent=hg002_chrY_paternal_232;transcript_biotype=protein_coding;origin_ID=NM_001197242.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_232.1;transcript_name=hg002_chrY_paternal_232.1
HG002_chrY	Liftoff	exon	9751168	9751699	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752307	9752384	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752513	9752624	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752726	9752871	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752967	9753059	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9753754	9753964	.	+	.	Parent=hg002_chrY_paternal_232.1;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9751214	9751699	.	+	0	Parent=hg002_chrY_paternal_232.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752307	9752384	.	+	0	Parent=hg002_chrY_paternal_232.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752513	9752624	.	+	0	Parent=hg002_chrY_paternal_232.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752726	9752871	.	+	2	Parent=hg002_chrY_paternal_232.1;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752967	9753029	.	+	0	Parent=hg002_chrY_paternal_232.1;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232.2;Parent=hg002_chrY_paternal_232;transcript_biotype=protein_coding;origin_ID=NM_001320964.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_232.2;transcript_name=hg002_chrY_paternal_232.2
HG002_chrY	Liftoff	exon	9751168	9751300	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9751562	9751699	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752307	9752384	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752513	9752624	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752726	9752871	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752978	9753059	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	exon	9753754	9753964	.	+	.	Parent=hg002_chrY_paternal_232.2;exon_number=7;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9751214	9751300	.	+	0	Parent=hg002_chrY_paternal_232.2;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9751562	9751699	.	+	0	Parent=hg002_chrY_paternal_232.2;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752307	9752384	.	+	0	Parent=hg002_chrY_paternal_232.2;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752513	9752624	.	+	0	Parent=hg002_chrY_paternal_232.2;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752726	9752871	.	+	2	Parent=hg002_chrY_paternal_232.2;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752978	9753059	.	+	0	Parent=hg002_chrY_paternal_232.2;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9753754	9753776	.	+	2	Parent=hg002_chrY_paternal_232.2;exon_number=7;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232.3;Parent=hg002_chrY_paternal_232;transcript_biotype=protein_coding;origin_ID=NM_003308.4;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_232.3;transcript_name=hg002_chrY_paternal_232.3
HG002_chrY	Liftoff	exon	9751168	9751699	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752307	9752384	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752513	9752624	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752726	9752871	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752978	9753059	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9753754	9753964	.	+	.	Parent=hg002_chrY_paternal_232.3;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9751214	9751699	.	+	0	Parent=hg002_chrY_paternal_232.3;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752307	9752384	.	+	0	Parent=hg002_chrY_paternal_232.3;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752513	9752624	.	+	0	Parent=hg002_chrY_paternal_232.3;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752726	9752871	.	+	2	Parent=hg002_chrY_paternal_232.3;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752978	9753059	.	+	0	Parent=hg002_chrY_paternal_232.3;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9753754	9753776	.	+	2	Parent=hg002_chrY_paternal_232.3;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232.4;Parent=hg002_chrY_paternal_232;transcript_biotype=protein_coding;origin_ID=XM_017030064.2;matches_ref_protein=False;valid_ORF=True;extra_copy_number=5;manual=False;gene_id=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_232.4;transcript_name=hg002_chrY_paternal_232.4
HG002_chrY	Liftoff	exon	9751168	9751699	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752307	9752384	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752513	9752624	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752733	9752871	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752978	9753059	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9753754	9753964	.	+	.	Parent=hg002_chrY_paternal_232.4;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9751214	9751699	.	+	0	Parent=hg002_chrY_paternal_232.4;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752307	9752384	.	+	0	Parent=hg002_chrY_paternal_232.4;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752513	9752624	.	+	0	Parent=hg002_chrY_paternal_232.4;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752733	9752871	.	+	2	Parent=hg002_chrY_paternal_232.4;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	CDS	9752978	9753029	.	+	1	Parent=hg002_chrY_paternal_232.4;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	transcript	9751168	9753964	.	+	.	ID=hg002_chrY_paternal_232.5;Parent=hg002_chrY_paternal_232;transcript_biotype=transcript;origin_ID=XR_001756005.2;extra_copy_number=5;gene_id=hg002_chrY_paternal_232;gene_name=TSPY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_232.5;transcript_name=hg002_chrY_paternal_232.5
HG002_chrY	Liftoff	exon	9751168	9751699	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752307	9752384	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752513	9752624	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752733	9752871	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=4;extra_copy_number=5
HG002_chrY	Liftoff	exon	9752967	9753059	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=5;extra_copy_number=5
HG002_chrY	Liftoff	exon	9753754	9753964	.	+	.	Parent=hg002_chrY_paternal_232.5;exon_number=6;extra_copy_number=5
HG002_chrY	Liftoff	gene	9763236	9768921	.	-	.	ID=hg002_chrY_paternal_233;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=8;copy_num_ID=REF.chrY.160_8
HG002_chrY	Liftoff	transcript	9763236	9768921	.	-	.	ID=hg002_chrY_paternal_233.1;Parent=hg002_chrY_paternal_233;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=8;gene_id=hg002_chrY_paternal_233;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_233.1;transcript_name=hg002_chrY_paternal_233.1
HG002_chrY	Liftoff	exon	9763236	9763295	.	-	.	Parent=hg002_chrY_paternal_233.1;exon_number=4;extra_copy_number=8
HG002_chrY	Liftoff	exon	9766846	9767004	.	-	.	Parent=hg002_chrY_paternal_233.1;exon_number=3;extra_copy_number=8
HG002_chrY	Liftoff	exon	9768499	9768644	.	-	.	Parent=hg002_chrY_paternal_233.1;exon_number=2;extra_copy_number=8
HG002_chrY	Liftoff	exon	9768731	9768921	.	-	.	Parent=hg002_chrY_paternal_233.1;exon_number=1;extra_copy_number=8
HG002_chrY	Liftoff	gene	9771445	9774242	.	+	.	ID=hg002_chrY_paternal_234;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=0.998;valid_ORFs=3;extra_copy_number=12;copy_num_ID=REF.chrY.162_12
HG002_chrY	Liftoff	transcript	9771445	9774242	.	+	.	ID=hg002_chrY_paternal_234.1;Parent=hg002_chrY_paternal_234;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=12;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_234;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_234.1;transcript_name=hg002_chrY_paternal_234.1
HG002_chrY	Liftoff	exon	9771445	9771976	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772584	9772661	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772790	9772901	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773003	9773148	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773255	9773336	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	exon	9774031	9774242	.	+	.	Parent=hg002_chrY_paternal_234.1;exon_number=6;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9771491	9771976	.	+	0	Parent=hg002_chrY_paternal_234.1;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772584	9772661	.	+	0	Parent=hg002_chrY_paternal_234.1;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772790	9772901	.	+	0	Parent=hg002_chrY_paternal_234.1;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773003	9773148	.	+	2	Parent=hg002_chrY_paternal_234.1;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773255	9773336	.	+	0	Parent=hg002_chrY_paternal_234.1;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9774031	9774053	.	+	2	Parent=hg002_chrY_paternal_234.1;exon_number=6;extra_copy_number=12
HG002_chrY	Liftoff	transcript	9771445	9774242	.	+	.	ID=hg002_chrY_paternal_234.2;Parent=hg002_chrY_paternal_234;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=12;manual=False;gene_id=hg002_chrY_paternal_234;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_234.2;transcript_name=hg002_chrY_paternal_234.2
HG002_chrY	Liftoff	exon	9771445	9771976	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772584	9772661	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772790	9772901	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773003	9773148	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773244	9773336	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	exon	9774031	9774242	.	+	.	Parent=hg002_chrY_paternal_234.2;exon_number=6;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9771491	9771976	.	+	0	Parent=hg002_chrY_paternal_234.2;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772584	9772661	.	+	0	Parent=hg002_chrY_paternal_234.2;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772790	9772901	.	+	0	Parent=hg002_chrY_paternal_234.2;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773003	9773148	.	+	2	Parent=hg002_chrY_paternal_234.2;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773244	9773306	.	+	0	Parent=hg002_chrY_paternal_234.2;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	transcript	9771445	9774242	.	+	.	ID=hg002_chrY_paternal_234.3;Parent=hg002_chrY_paternal_234;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=12;manual=False;gene_id=hg002_chrY_paternal_234;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_234.3;transcript_name=hg002_chrY_paternal_234.3
HG002_chrY	Liftoff	exon	9771445	9771976	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772584	9772661	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772790	9772901	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773010	9773148	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773255	9773336	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	exon	9774031	9774242	.	+	.	Parent=hg002_chrY_paternal_234.3;exon_number=6;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9771491	9771976	.	+	0	Parent=hg002_chrY_paternal_234.3;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772584	9772661	.	+	0	Parent=hg002_chrY_paternal_234.3;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9772790	9772901	.	+	0	Parent=hg002_chrY_paternal_234.3;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773010	9773148	.	+	2	Parent=hg002_chrY_paternal_234.3;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	CDS	9773255	9773306	.	+	1	Parent=hg002_chrY_paternal_234.3;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	transcript	9771445	9774242	.	+	.	ID=hg002_chrY_paternal_234.4;Parent=hg002_chrY_paternal_234;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=12;gene_id=hg002_chrY_paternal_234;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_234.4;transcript_name=hg002_chrY_paternal_234.4
HG002_chrY	Liftoff	exon	9771445	9771976	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=1;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772584	9772661	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=2;extra_copy_number=12
HG002_chrY	Liftoff	exon	9772790	9772901	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=3;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773010	9773148	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=4;extra_copy_number=12
HG002_chrY	Liftoff	exon	9773244	9773336	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=5;extra_copy_number=12
HG002_chrY	Liftoff	exon	9774031	9774242	.	+	.	Parent=hg002_chrY_paternal_234.4;exon_number=6;extra_copy_number=12
HG002_chrY	Liftoff	gene	9783536	9789229	.	-	.	ID=hg002_chrY_paternal_235;gene_name=FAM197Y2;gene_biotype=lncRNA;origin_ID=FAM197Y2;coverage=1.0;sequence_ID=1.0;extra_copy_number=23;copy_num_ID=REF.chrY.160_23
HG002_chrY	Liftoff	transcript	9783536	9789229	.	-	.	ID=hg002_chrY_paternal_235.1;Parent=hg002_chrY_paternal_235;transcript_biotype=lnc_RNA;origin_ID=NR_001553.2;extra_copy_number=23;gene_id=hg002_chrY_paternal_235;gene_name=FAM197Y2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_235.1;transcript_name=hg002_chrY_paternal_235.1
HG002_chrY	Liftoff	exon	9783536	9783595	.	-	.	Parent=hg002_chrY_paternal_235.1;exon_number=4;extra_copy_number=23
HG002_chrY	Liftoff	exon	9787146	9787304	.	-	.	Parent=hg002_chrY_paternal_235.1;exon_number=3;extra_copy_number=23
HG002_chrY	Liftoff	exon	9788807	9788952	.	-	.	Parent=hg002_chrY_paternal_235.1;exon_number=2;extra_copy_number=23
HG002_chrY	Liftoff	exon	9789039	9789229	.	-	.	Parent=hg002_chrY_paternal_235.1;exon_number=1;extra_copy_number=23
HG002_chrY	Liftoff	gene	9791753	9794549	.	+	.	ID=hg002_chrY_paternal_236;gene_name=TSPY10P;gene_biotype=pseudogene;origin_ID=TSPY10P;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.161_0
HG002_chrY	Liftoff	transcript	9791753	9794549	.	+	.	ID=hg002_chrY_paternal_236.1;Parent=hg002_chrY_paternal_236;transcript_biotype=NA;origin_ID=NM_001282469.3P;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_236;gene_name=TSPY10P;gene_biotype=pseudogene;transcript_id=hg002_chrY_paternal_236.1;transcript_name=hg002_chrY_paternal_236.1
HG002_chrY	Liftoff	exon	9791753	9792284	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9792892	9792969	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793098	9793209	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793311	9793456	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793563	9793644	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9794339	9794549	.	+	.	Parent=hg002_chrY_paternal_236.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9791799	9792284	.	+	0	Parent=hg002_chrY_paternal_236.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9792892	9792969	.	+	0	Parent=hg002_chrY_paternal_236.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793098	9793209	.	+	0	Parent=hg002_chrY_paternal_236.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793311	9793345	.	+	2	Parent=hg002_chrY_paternal_236.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9791753	9794549	.	+	.	ID=hg002_chrY_paternal_236.2;Parent=hg002_chrY_paternal_236;transcript_biotype=NA;origin_ID=NM_001320962.1P;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_236;gene_name=TSPY10P;gene_biotype=pseudogene;transcript_id=hg002_chrY_paternal_236.2;transcript_name=hg002_chrY_paternal_236.2
HG002_chrY	Liftoff	exon	9791753	9792284	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9792892	9792969	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793098	9793209	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793311	9793456	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793552	9793644	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9794339	9794549	.	+	.	Parent=hg002_chrY_paternal_236.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9791799	9792284	.	+	0	Parent=hg002_chrY_paternal_236.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9792892	9792969	.	+	0	Parent=hg002_chrY_paternal_236.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793098	9793209	.	+	0	Parent=hg002_chrY_paternal_236.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793311	9793345	.	+	2	Parent=hg002_chrY_paternal_236.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9791753	9794549	.	+	.	ID=hg002_chrY_paternal_236.3;Parent=hg002_chrY_paternal_236;transcript_biotype=NA;origin_ID=XM_017030025.2P;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_236;gene_name=TSPY10P;gene_biotype=pseudogene;transcript_id=hg002_chrY_paternal_236.3;transcript_name=hg002_chrY_paternal_236.3
HG002_chrY	Liftoff	exon	9791753	9792284	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9792892	9792969	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793098	9793209	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793318	9793456	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793563	9793644	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9794339	9794549	.	+	.	Parent=hg002_chrY_paternal_236.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9791799	9792284	.	+	0	Parent=hg002_chrY_paternal_236.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9792892	9792969	.	+	0	Parent=hg002_chrY_paternal_236.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793098	9793209	.	+	0	Parent=hg002_chrY_paternal_236.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793318	9793456	.	+	2	Parent=hg002_chrY_paternal_236.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9793563	9793614	.	+	1	Parent=hg002_chrY_paternal_236.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9791753	9794549	.	+	.	ID=hg002_chrY_paternal_236.4;Parent=hg002_chrY_paternal_236;transcript_biotype=NA;origin_ID=XR_001756003.2P;extra_copy_number=0;gene_id=hg002_chrY_paternal_236;gene_name=TSPY10P;gene_biotype=pseudogene;transcript_id=hg002_chrY_paternal_236.4;transcript_name=hg002_chrY_paternal_236.4
HG002_chrY	Liftoff	exon	9791753	9792284	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	exon	9792892	9792969	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793098	9793209	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793318	9793456	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	exon	9793552	9793644	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	exon	9794339	9794549	.	+	.	Parent=hg002_chrY_paternal_236.4;exon_number=NA;extra_copy_number=0
HG002_chrY	Liftoff	gene	9803867	9809471	.	-	.	ID=hg002_chrY_paternal_237;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=0.995;extra_copy_number=13;copy_num_ID=REF.chrY.159_13
HG002_chrY	Liftoff	transcript	9803867	9809471	.	-	.	ID=hg002_chrY_paternal_237.1;Parent=hg002_chrY_paternal_237;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=13;gene_id=hg002_chrY_paternal_237;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_237.1;transcript_name=hg002_chrY_paternal_237.1
HG002_chrY	Liftoff	exon	9803867	9803926	.	-	.	Parent=hg002_chrY_paternal_237.1;exon_number=4;extra_copy_number=13
HG002_chrY	Liftoff	exon	9807476	9807634	.	-	.	Parent=hg002_chrY_paternal_237.1;exon_number=3;extra_copy_number=13
HG002_chrY	Liftoff	exon	9809138	9809283	.	-	.	Parent=hg002_chrY_paternal_237.1;exon_number=2;extra_copy_number=13
HG002_chrY	Liftoff	exon	9809370	9809471	.	-	.	Parent=hg002_chrY_paternal_237.1;exon_number=1;extra_copy_number=13
HG002_chrY	Liftoff	gene	9812081	9814877	.	+	.	ID=hg002_chrY_paternal_238;gene_name=TSPY10;gene_biotype=protein_coding;origin_ID=TSPY10;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.162_0
HG002_chrY	Liftoff	transcript	9812081	9814877	.	+	.	ID=hg002_chrY_paternal_238.1;Parent=hg002_chrY_paternal_238;transcript_biotype=protein_coding;origin_ID=NM_001282469.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_238;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_238.1;transcript_name=hg002_chrY_paternal_238.1
HG002_chrY	Liftoff	exon	9812081	9812612	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813220	9813297	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813426	9813537	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813639	9813784	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813891	9813972	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9814667	9814877	.	+	.	Parent=hg002_chrY_paternal_238.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9812127	9812612	.	+	0	Parent=hg002_chrY_paternal_238.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813220	9813297	.	+	0	Parent=hg002_chrY_paternal_238.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813426	9813537	.	+	0	Parent=hg002_chrY_paternal_238.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813639	9813784	.	+	2	Parent=hg002_chrY_paternal_238.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813891	9813972	.	+	0	Parent=hg002_chrY_paternal_238.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9814667	9814689	.	+	2	Parent=hg002_chrY_paternal_238.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9812081	9814877	.	+	.	ID=hg002_chrY_paternal_238.2;Parent=hg002_chrY_paternal_238;transcript_biotype=protein_coding;origin_ID=NM_001320962.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_238;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_238.2;transcript_name=hg002_chrY_paternal_238.2
HG002_chrY	Liftoff	exon	9812081	9812612	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813220	9813297	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813426	9813537	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813639	9813784	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813880	9813972	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9814667	9814877	.	+	.	Parent=hg002_chrY_paternal_238.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9812127	9812612	.	+	0	Parent=hg002_chrY_paternal_238.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813220	9813297	.	+	0	Parent=hg002_chrY_paternal_238.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813426	9813537	.	+	0	Parent=hg002_chrY_paternal_238.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813639	9813784	.	+	2	Parent=hg002_chrY_paternal_238.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813880	9813942	.	+	0	Parent=hg002_chrY_paternal_238.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9812081	9814877	.	+	.	ID=hg002_chrY_paternal_238.3;Parent=hg002_chrY_paternal_238;transcript_biotype=protein_coding;origin_ID=XM_017030025.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_238;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_238.3;transcript_name=hg002_chrY_paternal_238.3
HG002_chrY	Liftoff	exon	9812081	9812612	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813220	9813297	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813426	9813537	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813646	9813784	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813891	9813972	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9814667	9814877	.	+	.	Parent=hg002_chrY_paternal_238.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9812127	9812612	.	+	0	Parent=hg002_chrY_paternal_238.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813220	9813297	.	+	0	Parent=hg002_chrY_paternal_238.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813426	9813537	.	+	0	Parent=hg002_chrY_paternal_238.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813646	9813784	.	+	2	Parent=hg002_chrY_paternal_238.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	9813891	9813942	.	+	1	Parent=hg002_chrY_paternal_238.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	9812081	9814877	.	+	.	ID=hg002_chrY_paternal_238.4;Parent=hg002_chrY_paternal_238;transcript_biotype=transcript;origin_ID=XR_001756003.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_238;gene_name=TSPY10;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_238.4;transcript_name=hg002_chrY_paternal_238.4
HG002_chrY	Liftoff	exon	9812081	9812612	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813220	9813297	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813426	9813537	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813646	9813784	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	9813880	9813972	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	9814667	9814877	.	+	.	Parent=hg002_chrY_paternal_238.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	9824189	9829781	.	-	.	ID=hg002_chrY_paternal_239;gene_name=FAM197Y3;gene_biotype=lncRNA;origin_ID=FAM197Y3;coverage=1.0;sequence_ID=1.0;extra_copy_number=14;copy_num_ID=REF.chrY.159_14
HG002_chrY	Liftoff	transcript	9824189	9829781	.	-	.	ID=hg002_chrY_paternal_239.1;Parent=hg002_chrY_paternal_239;transcript_biotype=lnc_RNA;origin_ID=NR_145461.1;extra_copy_number=14;gene_id=hg002_chrY_paternal_239;gene_name=FAM197Y3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_239.1;transcript_name=hg002_chrY_paternal_239.1
HG002_chrY	Liftoff	exon	9824189	9824248	.	-	.	Parent=hg002_chrY_paternal_239.1;exon_number=4;extra_copy_number=14
HG002_chrY	Liftoff	exon	9827800	9827958	.	-	.	Parent=hg002_chrY_paternal_239.1;exon_number=3;extra_copy_number=14
HG002_chrY	Liftoff	exon	9829448	9829593	.	-	.	Parent=hg002_chrY_paternal_239.1;exon_number=2;extra_copy_number=14
HG002_chrY	Liftoff	exon	9829680	9829781	.	-	.	Parent=hg002_chrY_paternal_239.1;exon_number=1;extra_copy_number=14
HG002_chrY	Liftoff	gene	9832394	9835206	.	+	.	ID=hg002_chrY_paternal_240;gene_name=TSPY9;gene_biotype=protein_coding;origin_ID=TSPY9;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=3;copy_num_ID=REF.chrY.158_3
HG002_chrY	Liftoff	transcript	9832394	9835206	.	+	.	ID=hg002_chrY_paternal_240.1;Parent=hg002_chrY_paternal_240;transcript_biotype=protein_coding;origin_ID=NM_001396063.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_240;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_240.1;transcript_name=hg002_chrY_paternal_240.1
HG002_chrY	Liftoff	exon	9832394	9832943	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833551	9833628	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833757	9833868	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833970	9834115	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9834222	9834303	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9834996	9835206	.	+	.	Parent=hg002_chrY_paternal_240.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9832440	9832943	.	+	0	Parent=hg002_chrY_paternal_240.1;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833551	9833628	.	+	0	Parent=hg002_chrY_paternal_240.1;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833757	9833868	.	+	0	Parent=hg002_chrY_paternal_240.1;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833970	9834115	.	+	2	Parent=hg002_chrY_paternal_240.1;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9834222	9834303	.	+	0	Parent=hg002_chrY_paternal_240.1;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9834996	9835018	.	+	2	Parent=hg002_chrY_paternal_240.1;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	transcript	9832394	9835206	.	+	.	ID=hg002_chrY_paternal_240.2;Parent=hg002_chrY_paternal_240;transcript_biotype=protein_coding;origin_ID=XM_047442744.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=3;manual=False;gene_id=hg002_chrY_paternal_240;gene_name=TSPY9;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_240.2;transcript_name=hg002_chrY_paternal_240.2
HG002_chrY	Liftoff	exon	9832394	9832943	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833551	9833628	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833757	9833868	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	exon	9833970	9834115	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	exon	9834211	9834303	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	exon	9834996	9835206	.	+	.	Parent=hg002_chrY_paternal_240.2;exon_number=6;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9832440	9832943	.	+	0	Parent=hg002_chrY_paternal_240.2;exon_number=1;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833551	9833628	.	+	0	Parent=hg002_chrY_paternal_240.2;exon_number=2;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833757	9833868	.	+	0	Parent=hg002_chrY_paternal_240.2;exon_number=3;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9833970	9834115	.	+	2	Parent=hg002_chrY_paternal_240.2;exon_number=4;extra_copy_number=3
HG002_chrY	Liftoff	CDS	9834211	9834273	.	+	0	Parent=hg002_chrY_paternal_240.2;exon_number=5;extra_copy_number=3
HG002_chrY	Liftoff	gene	9852600	9855410	.	+	.	ID=hg002_chrY_paternal_241;gene_name=TSPY15P;gene_biotype=pseudogene;origin_ID=TSPY15P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.163_0
HG002_chrY	Liftoff	gene	9915261	9919693	.	-	.	ID=hg002_chrY_paternal_242;gene_name=RBMY3AP;gene_biotype=transcribed_pseudogene;origin_ID=RBMY3AP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.164_0
HG002_chrY	Liftoff	transcript	9915261	9919693	.	-	.	ID=hg002_chrY_paternal_242.1;Parent=hg002_chrY_paternal_242;transcript_biotype=transcript;origin_ID=NR_001573.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_242;gene_name=RBMY3AP;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_242.1;transcript_name=hg002_chrY_paternal_242.1
HG002_chrY	Liftoff	exon	9915261	9915411	.	-	.	Parent=hg002_chrY_paternal_242.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	9919322	9919423	.	-	.	Parent=hg002_chrY_paternal_242.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9919630	9919693	.	-	.	Parent=hg002_chrY_paternal_242.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	9928723	9930892	.	+	.	ID=hg002_chrY_paternal_243;gene_name=TSPY25P;gene_biotype=pseudogene;origin_ID=TSPY25P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.165_0
HG002_chrY	Liftoff	gene	9944789	9945301	.	-	.	ID=hg002_chrY_paternal_244;gene_name=TSPY16P;gene_biotype=pseudogene;origin_ID=TSPY16P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.166_0
HG002_chrY	Liftoff	gene	9995637	9998236	.	+	.	ID=hg002_chrY_paternal_245;gene_name=TTTY8;gene_biotype=lncRNA;origin_ID=TTTY8;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.167_0
HG002_chrY	Liftoff	transcript	9995637	9998236	.	+	.	ID=hg002_chrY_paternal_245.1;Parent=hg002_chrY_paternal_245;transcript_biotype=lnc_RNA;origin_ID=NR_001533.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_245;gene_name=TTTY8;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_245.1;transcript_name=hg002_chrY_paternal_245.1
HG002_chrY	Liftoff	exon	9995637	9995772	.	+	.	Parent=hg002_chrY_paternal_245.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	9996250	9996454	.	+	.	Parent=hg002_chrY_paternal_245.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	9998047	9998236	.	+	.	Parent=hg002_chrY_paternal_245.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	10011361	10019799	.	-	.	ID=hg002_chrY_paternal_246;gene_name=TTTY7B;gene_biotype=lncRNA;origin_ID=TTTY7B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.168_0
HG002_chrY	Liftoff	transcript	10011361	10019799	.	-	.	ID=hg002_chrY_paternal_246.1;Parent=hg002_chrY_paternal_246;transcript_biotype=lnc_RNA;origin_ID=NR_003592.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_246;gene_name=TTTY7B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_246.1;transcript_name=hg002_chrY_paternal_246.1
HG002_chrY	Liftoff	exon	10011361	10011606	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10013082	10013195	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10015113	10015589	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10016278	10016352	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10018660	10018821	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10019763	10019799	.	-	.	Parent=hg002_chrY_paternal_246.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	10022190	10025833	.	-	.	ID=hg002_chrY_paternal_247;gene_name=TTTY21;gene_biotype=lncRNA;origin_ID=TTTY21;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.169_0
HG002_chrY	Liftoff	transcript	10022190	10025833	.	-	.	ID=hg002_chrY_paternal_247.1;Parent=hg002_chrY_paternal_247;transcript_biotype=lnc_RNA;origin_ID=NR_001535.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_247;gene_name=TTTY21;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_247.1;transcript_name=hg002_chrY_paternal_247.1
HG002_chrY	Liftoff	exon	10022190	10022294	.	-	.	Parent=hg002_chrY_paternal_247.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10025632	10025833	.	-	.	Parent=hg002_chrY_paternal_247.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	10040823	10063024	.	+	.	ID=hg002_chrY_paternal_248;gene_name=TTTY2;gene_biotype=lncRNA;origin_ID=TTTY2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.170_0
HG002_chrY	Liftoff	transcript	10040823	10063024	.	+	.	ID=hg002_chrY_paternal_248.1;Parent=hg002_chrY_paternal_248;transcript_biotype=lnc_RNA;origin_ID=NR_001536.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_248;gene_name=TTTY2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_248.1;transcript_name=hg002_chrY_paternal_248.1
HG002_chrY	Liftoff	exon	10040823	10041027	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	10046862	10046939	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10049416	10049502	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10056897	10057045	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10057738	10057894	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10060725	10060803	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10060924	10061121	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	10062345	10063024	.	+	.	Parent=hg002_chrY_paternal_248.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	gene	10057704	10078869	.	-	.	ID=hg002_chrY_paternal_249;gene_name=TTTY1B;gene_biotype=lncRNA;origin_ID=TTTY1B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.171_0
HG002_chrY	Liftoff	transcript	10057704	10078869	.	-	.	ID=hg002_chrY_paternal_249.1;Parent=hg002_chrY_paternal_249;transcript_biotype=lnc_RNA;origin_ID=NR_003589.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_249;gene_name=TTTY1B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_249.1;transcript_name=hg002_chrY_paternal_249.1
HG002_chrY	Liftoff	exon	10057704	10057961	.	-	.	Parent=hg002_chrY_paternal_249.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10065543	10065680	.	-	.	Parent=hg002_chrY_paternal_249.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10068037	10068145	.	-	.	Parent=hg002_chrY_paternal_249.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10075011	10075170	.	-	.	Parent=hg002_chrY_paternal_249.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10078595	10078869	.	-	.	Parent=hg002_chrY_paternal_249.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	10099350	10102761	.	+	.	ID=hg002_chrY_paternal_250;gene_name=LOC107987353;gene_biotype=lncRNA;origin_ID=LOC107987353;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.172_0
HG002_chrY	Liftoff	transcript	10099350	10102761	.	+	.	ID=hg002_chrY_paternal_250.1;Parent=hg002_chrY_paternal_250;transcript_biotype=lnc_RNA;origin_ID=XR_001756087.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_250;gene_name=LOC107987353;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_250.1;transcript_name=hg002_chrY_paternal_250.1
HG002_chrY	Liftoff	exon	10099350	10099518	.	+	.	Parent=hg002_chrY_paternal_250.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	10099895	10099967	.	+	.	Parent=hg002_chrY_paternal_250.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10102499	10102761	.	+	.	Parent=hg002_chrY_paternal_250.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	10107859	10112061	.	+	.	ID=hg002_chrY_paternal_251;gene_name=LINC00280;gene_biotype=lncRNA;origin_ID=LINC00280;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.173_0
HG002_chrY	Liftoff	transcript	10107859	10112061	.	+	.	ID=hg002_chrY_paternal_251.1;Parent=hg002_chrY_paternal_251;transcript_biotype=lnc_RNA;origin_ID=NR_046505.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_251;gene_name=LINC00280;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_251.1;transcript_name=hg002_chrY_paternal_251.1
HG002_chrY	Liftoff	exon	10107859	10107944	.	+	.	Parent=hg002_chrY_paternal_251.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	10110446	10110588	.	+	.	Parent=hg002_chrY_paternal_251.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10111843	10112061	.	+	.	Parent=hg002_chrY_paternal_251.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	10125696	10141118	.	-	.	ID=hg002_chrY_paternal_252;gene_name=RBMY2GP;gene_biotype=pseudogene;origin_ID=RBMY2GP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.174_0
HG002_chrY	Liftoff	gene	10164191	10164709	.	+	.	ID=hg002_chrY_paternal_253;gene_name=TSPY19P;gene_biotype=pseudogene;origin_ID=TSPY19P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.175_0
HG002_chrY	Liftoff	gene	10200032	10202760	.	-	.	ID=hg002_chrY_paternal_254;gene_name=TSPY11P;gene_biotype=pseudogene;origin_ID=TSPY11P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.176_0
HG002_chrY	Liftoff	gene	10205372	10210975	.	+	.	ID=hg002_chrY_paternal_255;gene_name=FAM197Y9;gene_biotype=lncRNA;origin_ID=FAM197Y9;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.177_0
HG002_chrY	Liftoff	transcript	10205372	10210975	.	+	.	ID=hg002_chrY_paternal_255.1;Parent=hg002_chrY_paternal_255;transcript_biotype=lnc_RNA;origin_ID=NR_145462.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_255;gene_name=FAM197Y9;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_255.1;transcript_name=hg002_chrY_paternal_255.1
HG002_chrY	Liftoff	exon	10205372	10205473	.	+	.	Parent=hg002_chrY_paternal_255.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	10205560	10205705	.	+	.	Parent=hg002_chrY_paternal_255.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10207206	10207364	.	+	.	Parent=hg002_chrY_paternal_255.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10210916	10210975	.	+	.	Parent=hg002_chrY_paternal_255.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	10220288	10223083	.	-	.	ID=hg002_chrY_paternal_256;gene_name=TSPY2;gene_biotype=protein_coding;origin_ID=TSPY2;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.178_0
HG002_chrY	Liftoff	transcript	10220288	10223083	.	-	.	ID=hg002_chrY_paternal_256.1;Parent=hg002_chrY_paternal_256;transcript_biotype=protein_coding;origin_ID=NM_022573.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_256;gene_name=TSPY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_256.1;transcript_name=hg002_chrY_paternal_256.1
HG002_chrY	Liftoff	exon	10220288	10220503	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221198	10221279	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221386	10221531	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221633	10221744	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221873	10221950	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10222552	10223083	.	-	.	Parent=hg002_chrY_paternal_256.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10220481	10220503	.	-	2	Parent=hg002_chrY_paternal_256.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221198	10221279	.	-	0	Parent=hg002_chrY_paternal_256.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221386	10221531	.	-	2	Parent=hg002_chrY_paternal_256.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221633	10221744	.	-	0	Parent=hg002_chrY_paternal_256.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221873	10221950	.	-	0	Parent=hg002_chrY_paternal_256.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10222552	10223037	.	-	0	Parent=hg002_chrY_paternal_256.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	10220288	10223083	.	-	.	ID=hg002_chrY_paternal_256.2;Parent=hg002_chrY_paternal_256;transcript_biotype=protein_coding;origin_ID=XM_005262569.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_256;gene_name=TSPY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_256.2;transcript_name=hg002_chrY_paternal_256.2
HG002_chrY	Liftoff	exon	10220288	10220503	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221198	10221290	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221386	10221531	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221633	10221744	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221873	10221950	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10222552	10223083	.	-	.	Parent=hg002_chrY_paternal_256.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221228	10221290	.	-	0	Parent=hg002_chrY_paternal_256.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221386	10221531	.	-	2	Parent=hg002_chrY_paternal_256.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221633	10221744	.	-	0	Parent=hg002_chrY_paternal_256.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221873	10221950	.	-	0	Parent=hg002_chrY_paternal_256.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10222552	10223037	.	-	0	Parent=hg002_chrY_paternal_256.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	10220288	10223083	.	-	.	ID=hg002_chrY_paternal_256.3;Parent=hg002_chrY_paternal_256;transcript_biotype=protein_coding;origin_ID=XM_017030062.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_256;gene_name=TSPY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_256.3;transcript_name=hg002_chrY_paternal_256.3
HG002_chrY	Liftoff	exon	10220288	10220503	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221198	10221279	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221386	10221524	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221633	10221744	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221873	10221950	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10222552	10223083	.	-	.	Parent=hg002_chrY_paternal_256.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221228	10221279	.	-	1	Parent=hg002_chrY_paternal_256.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221386	10221524	.	-	2	Parent=hg002_chrY_paternal_256.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221633	10221744	.	-	0	Parent=hg002_chrY_paternal_256.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10221873	10221950	.	-	0	Parent=hg002_chrY_paternal_256.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	10222552	10223037	.	-	0	Parent=hg002_chrY_paternal_256.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	10220288	10223083	.	-	.	ID=hg002_chrY_paternal_256.4;Parent=hg002_chrY_paternal_256;transcript_biotype=transcript;origin_ID=XR_001756004.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_256;gene_name=TSPY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_256.4;transcript_name=hg002_chrY_paternal_256.4
HG002_chrY	Liftoff	exon	10220288	10220503	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221198	10221290	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221386	10221524	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221633	10221744	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	10221873	10221950	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10222552	10223083	.	-	.	Parent=hg002_chrY_paternal_256.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	10225687	10226851	.	+	.	ID=hg002_chrY_paternal_257;gene_name=TTTY23B;gene_biotype=lncRNA;origin_ID=TTTY23B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.179_0
HG002_chrY	Liftoff	transcript	10225687	10226851	.	+	.	ID=hg002_chrY_paternal_257.1;Parent=hg002_chrY_paternal_257;transcript_biotype=lnc_RNA;origin_ID=NR_003593.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_257;gene_name=TTTY23B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_257.1;transcript_name=hg002_chrY_paternal_257.1
HG002_chrY	Liftoff	exon	10225687	10225743	.	+	.	Parent=hg002_chrY_paternal_257.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	10225857	10226002	.	+	.	Parent=hg002_chrY_paternal_257.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	10226543	10226851	.	+	.	Parent=hg002_chrY_paternal_257.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	10266464	10274758	.	+	.	ID=hg002_chrY_paternal_258;gene_name=RBMY2OP;gene_biotype=pseudogene;origin_ID=RBMY2OP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.180_0
HG002_chrY	Liftoff	gene	10337142	10350258	.	-	.	ID=hg002_chrY_paternal_259;gene_name=RBMY2QP;gene_biotype=pseudogene;origin_ID=RBMY2QP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.181_0
HG002_chrY	Liftoff	gene	10349952	10353323	.	+	.	ID=hg002_chrY_paternal_260;gene_name=TSPY20P;gene_biotype=pseudogene;origin_ID=TSPY20P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.182_0
HG002_chrY	Liftoff	gene	10381330	10384145	.	-	.	ID=hg002_chrY_paternal_261;gene_name=TSPY5P;gene_biotype=pseudogene;origin_ID=TSPY5P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.183_0
HG002_chrY	Liftoff	gene	10405359	10405477	.	-	.	ID=hg002_chrY_paternal_262;gene_name=RNA5SP518;gene_biotype=pseudogene;origin_ID=RNA5SP518;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.184_0
HG002_chrY	Liftoff	gene	10407824	10407942	.	-	.	ID=hg002_chrY_paternal_263;gene_name=RNA5SP519;gene_biotype=pseudogene;origin_ID=RNA5SP519;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.185_0
HG002_chrY	Liftoff	gene	10471129	10471390	.	+	.	ID=hg002_chrY_paternal_264;gene_name=MRPL57P10;gene_biotype=pseudogene;origin_ID=MRPL57P10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.186_0
HG002_chrY	Liftoff	gene	10486560	10487599	.	-	.	ID=hg002_chrY_paternal_265;gene_name=DUX4L31;gene_biotype=pseudogene;origin_ID=DUX4L31;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.187_0
HG002_chrY	Liftoff	gene	10488797	10489348	.	+	.	ID=hg002_chrY_paternal_266;gene_name=PCMTD1P1;gene_biotype=pseudogene;origin_ID=PCMTD1P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.188_0
HG002_chrY	Liftoff	gene	10488797	10489349	.	-	.	ID=hg002_chrY_paternal_267;gene_name=PCMTD1P4;gene_biotype=pseudogene;origin_ID=PCMTD1P4;coverage=0.994;sequence_ID=0.967;extra_copy_number=4;copy_num_ID=REF.chr22.37_4
HG002_chrY	Liftoff	gene	10505329	10507374	.	-	.	ID=hg002_chrY_paternal_268;gene_name=CDC27P2;gene_biotype=pseudogene;origin_ID=CDC27P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.189_0
HG002_chrY	Liftoff	gene	10508889	10512158	.	-	.	ID=hg002_chrY_paternal_269;gene_name=LOC101059962;gene_biotype=pseudogene;origin_ID=LOC101059962;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.190_0
HG002_chrY	Liftoff	gene	10512216	10514063	.	+	.	ID=hg002_chrY_paternal_270;gene_name=RNA18SP2;gene_biotype=pseudogene;origin_ID=RNA18SP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.191_0
HG002_chrY	Liftoff	gene	10515114	10515265	.	+	.	ID=hg002_chrY_paternal_271;gene_name=RNA5-8SP6;gene_biotype=pseudogene;origin_ID=RNA5-8SP6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.192_0
HG002_chrY	Liftoff	gene	11302489	11303362	.	-	.	ID=hg002_chrY_paternal_272;gene_name=CDRT15P10;gene_biotype=pseudogene;origin_ID=CDRT15P10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.193_0
HG002_chrY	Liftoff	gene	11312181	11312700	.	-	.	ID=hg002_chrY_paternal_273;gene_name=LOC100419952;gene_biotype=pseudogene;origin_ID=LOC100419952;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.194_0
HG002_chrY	Liftoff	gene	11324240	11325346	.	+	.	ID=hg002_chrY_paternal_274;gene_name=LOC107987335;gene_biotype=pseudogene;origin_ID=LOC107987335;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.195_0
HG002_chrY	Liftoff	gene	11338284	11341298	.	-	.	ID=hg002_chrY_paternal_275;gene_name=LOC124904996;gene_biotype=lncRNA;origin_ID=LOC124904996;coverage=0.995;sequence_ID=0.954;extra_copy_number=18;copy_num_ID=REF.chr21.36_18
HG002_chrY	Liftoff	transcript	11338284	11341298	.	-	.	ID=hg002_chrY_paternal_275.1;Parent=hg002_chrY_paternal_275;transcript_biotype=lnc_RNA;origin_ID=XR_007067807.1;extra_copy_number=18;gene_id=hg002_chrY_paternal_275;gene_name=LOC124904996;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_275.1;transcript_name=hg002_chrY_paternal_275.1
HG002_chrY	Liftoff	exon	11338284	11339549	.	-	.	Parent=hg002_chrY_paternal_275.1;exon_number=2;extra_copy_number=18
HG002_chrY	Liftoff	exon	11340877	11341298	.	-	.	Parent=hg002_chrY_paternal_275.1;exon_number=1;extra_copy_number=18
HG002_chrY	Liftoff	gene	11349639	11350238	.	+	.	ID=hg002_chrY_paternal_276;gene_name=MTCO3P36;gene_biotype=pseudogene;origin_ID=MTCO3P36;coverage=1.0;sequence_ID=0.98;extra_copy_number=1;copy_num_ID=REF.chr9.844_1
HG002_chrY	Liftoff	gene	11349639	11350249	.	-	.	ID=hg002_chrY_paternal_277;gene_name=MTCO3P37;gene_biotype=pseudogene;origin_ID=MTCO3P37;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.196_0
HG002_chrY	Liftoff	gene	11350543	11351600	.	+	.	ID=hg002_chrY_paternal_278;gene_name=MTCO1P37;gene_biotype=pseudogene;origin_ID=MTCO1P37;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.197_0
HG002_chrY	Liftoff	gene	11370988	11376385	.	-	.	ID=hg002_chrY_paternal_279;gene_name=TEKT4P1;gene_biotype=pseudogene;origin_ID=TEKT4P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.198_0
HG002_chrY	Liftoff	gene	11385178	11386346	.	-	.	ID=hg002_chrY_paternal_280;gene_name=SOWAHCP1;gene_biotype=pseudogene;origin_ID=SOWAHCP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.199_0
HG002_chrY	Liftoff	gene	11387916	11389290	.	-	.	ID=hg002_chrY_paternal_281;gene_name=LINC00268-2P;gene_biotype=pseudogene;origin_ID=LINC00268-2P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.200_0
HG002_chrY	Liftoff	gene	11390509	11391005	.	+	.	ID=hg002_chrY_paternal_282;gene_name=ANKRD20A6P;gene_biotype=pseudogene;origin_ID=ANKRD20A6P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.201_0
HG002_chrY	Liftoff	gene	11395782	11396428	.	+	.	ID=hg002_chrY_paternal_283;gene_name=SNX18P1Y;gene_biotype=pseudogene;origin_ID=SNX18P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.202_0
HG002_chrY	Liftoff	gene	11423829	11432186	.	-	.	ID=hg002_chrY_paternal_284;gene_name=LOC105379273;gene_biotype=lncRNA;origin_ID=LOC105379273;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.203_0
HG002_chrY	Liftoff	transcript	11423829	11432186	.	-	.	ID=hg002_chrY_paternal_284.1;Parent=hg002_chrY_paternal_284;transcript_biotype=lnc_RNA;origin_ID=XR_002958840.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_284;gene_name=LOC105379273;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_284.1;transcript_name=hg002_chrY_paternal_284.1
HG002_chrY	Liftoff	exon	11423829	11423870	.	-	.	Parent=hg002_chrY_paternal_284.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	11429933	11429991	.	-	.	Parent=hg002_chrY_paternal_284.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	11432127	11432186	.	-	.	Parent=hg002_chrY_paternal_284.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	11524095	11525368	.	+	.	ID=hg002_chrY_paternal_285;gene_name=DUX4L16;gene_biotype=pseudogene;origin_ID=DUX4L16;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.204_0
HG002_chrY	Liftoff	gene	11532098	11533522	.	+	.	ID=hg002_chrY_paternal_286;gene_name=DUX4L17;gene_biotype=pseudogene;origin_ID=DUX4L17;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.205_0
HG002_chrY	Liftoff	gene	11538735	11540160	.	+	.	ID=hg002_chrY_paternal_287;gene_name=DUX4L18;gene_biotype=pseudogene;origin_ID=DUX4L18;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.206_0
HG002_chrY	Liftoff	gene	11549509	11551031	.	+	.	ID=hg002_chrY_paternal_288;gene_name=DUX4L19;gene_biotype=pseudogene;origin_ID=DUX4L19;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.207_0
HG002_chrY	Liftoff	gene	11553581	11554287	.	+	.	ID=hg002_chrY_paternal_289;gene_name=PABPC1P5;gene_biotype=pseudogene;origin_ID=PABPC1P5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.208_0
HG002_chrY	Liftoff	gene	11557568	11602859	.	-	.	ID=hg002_chrY_paternal_290;gene_name=SLC9B1P1;gene_biotype=pseudogene;origin_ID=SLC9B1P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.209_0
HG002_chrY	Liftoff	gene	11612842	11614684	.	+	.	ID=hg002_chrY_paternal_291;gene_name=ACTR3BP1;gene_biotype=pseudogene;origin_ID=ACTR3BP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.210_0
HG002_chrY	Liftoff	gene	11629722	11636047	.	+	.	ID=hg002_chrY_paternal_292;gene_name=CHEK2P1;gene_biotype=pseudogene;origin_ID=CHEK2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.211_0
HG002_chrY	Liftoff	gene	11662593	11662739	.	-	.	ID=hg002_chrY_paternal_293;gene_name=MTND1P12;gene_biotype=pseudogene;origin_ID=MTND1P12;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.212_0
HG002_chrY	Liftoff	gene	11690939	11691415	.	-	.	ID=hg002_chrY_paternal_294;gene_name=IGKV1ORY-1;gene_biotype=pseudogene;origin_ID=IGKV1ORY-1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.213_0
HG002_chrY	Liftoff	gene	12683827	12685297	.	-	.	ID=hg002_chrY_paternal_295;gene_name=RCC2P1;gene_biotype=pseudogene;origin_ID=RCC2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.214_0
HG002_chrY	Liftoff	gene	12691964	12692572	.	+	.	ID=hg002_chrY_paternal_296;gene_name=LOC100420879;gene_biotype=pseudogene;origin_ID=LOC100420879;coverage=0.993;sequence_ID=0.967;extra_copy_number=1;copy_num_ID=REF.chr1.5267_1
HG002_chrY	Liftoff	gene	12825009	12826502	.	-	.	ID=hg002_chrY_paternal_297;gene_name=ASS1P6;gene_biotype=pseudogene;origin_ID=ASS1P6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.215_0
HG002_chrY	Liftoff	gene	12859900	12891347	.	+	.	ID=hg002_chrY_paternal_298;gene_name=MXRA5Y;gene_biotype=pseudogene;origin_ID=MXRA5Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.216_0
HG002_chrY	Liftoff	gene	13148008	13155387	.	+	.	ID=hg002_chrY_paternal_299;gene_name=RPS24P1;gene_biotype=pseudogene;origin_ID=RPS24P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.217_0
HG002_chrY	Liftoff	gene	13155463	13161298	.	-	.	ID=hg002_chrY_paternal_300;gene_name=ARSFP1;gene_biotype=pseudogene;origin_ID=ARSFP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.218_0
HG002_chrY	Liftoff	gene	13176748	13177017	.	+	.	ID=hg002_chrY_paternal_301;gene_name=RN7SL702P;gene_biotype=pseudogene;origin_ID=RN7SL702P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.219_0
HG002_chrY	Liftoff	gene	13224842	13226522	.	+	.	ID=hg002_chrY_paternal_302;gene_name=FAM8A4P;gene_biotype=pseudogene;origin_ID=FAM8A4P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.220_0
HG002_chrY	Liftoff	gene	13235336	13250951	.	+	.	ID=hg002_chrY_paternal_303;gene_name=ARSLP1;gene_biotype=pseudogene;origin_ID=ARSLP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.221_0
HG002_chrY	Liftoff	gene	13257296	13283232	.	+	.	ID=hg002_chrY_paternal_304;gene_name=ARSDP1;gene_biotype=pseudogene;origin_ID=ARSDP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.222_0
HG002_chrY	Liftoff	gene	13258037	13266971	.	-	.	ID=hg002_chrY_paternal_305;gene_name=LOC107987343;gene_biotype=lncRNA;origin_ID=LOC107987343;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.223_0
HG002_chrY	Liftoff	transcript	13258037	13266971	.	-	.	ID=hg002_chrY_paternal_305.1;Parent=hg002_chrY_paternal_305;transcript_biotype=lnc_RNA;origin_ID=XR_001756060.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_305;gene_name=LOC107987343;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_305.1;transcript_name=hg002_chrY_paternal_305.1
HG002_chrY	Liftoff	exon	13258037	13259429	.	-	.	Parent=hg002_chrY_paternal_305.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13261992	13262118	.	-	.	Parent=hg002_chrY_paternal_305.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13265076	13266971	.	-	.	Parent=hg002_chrY_paternal_305.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	13309568	13325042	.	-	.	ID=hg002_chrY_paternal_306;gene_name=GYG2P1;gene_biotype=transcribed_pseudogene;origin_ID=GYG2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.224_0
HG002_chrY	Liftoff	transcript	13309568	13325042	.	-	.	ID=hg002_chrY_paternal_306.1;Parent=hg002_chrY_paternal_306;transcript_biotype=transcript;origin_ID=NR_033667.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_306;gene_name=GYG2P1;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_306.1;transcript_name=hg002_chrY_paternal_306.1
HG002_chrY	Liftoff	exon	13309568	13309952	.	-	.	Parent=hg002_chrY_paternal_306.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13310248	13310389	.	-	.	Parent=hg002_chrY_paternal_306.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13310645	13310761	.	-	.	Parent=hg002_chrY_paternal_306.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13323768	13323906	.	-	.	Parent=hg002_chrY_paternal_306.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13325002	13325042	.	-	.	Parent=hg002_chrY_paternal_306.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	13342057	13411047	.	-	.	ID=hg002_chrY_paternal_307;gene_name=LOC124905301;gene_biotype=pseudogene;origin_ID=LOC124905301;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.225_0
HG002_chrY	Liftoff	gene	13387918	13410786	.	-	.	ID=hg002_chrY_paternal_308;gene_name=XGY1;gene_biotype=pseudogene;origin_ID=XGY1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.226_0
HG002_chrY	Liftoff	gene	13444696	13446858	.	+	.	ID=hg002_chrY_paternal_309;gene_name=SHROOM2P1;gene_biotype=pseudogene;origin_ID=SHROOM2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.227_0
HG002_chrY	Liftoff	gene	13522624	13538039	.	-	.	ID=hg002_chrY_paternal_310;gene_name=MED14P1;gene_biotype=pseudogene;origin_ID=MED14P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.228_0
HG002_chrY	Liftoff	gene	13565416	13567592	.	-	.	ID=hg002_chrY_paternal_311;gene_name=LOC112268311;gene_biotype=lncRNA;origin_ID=LOC112268311;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.229_0
HG002_chrY	Liftoff	transcript	13565416	13567583	.	-	.	ID=hg002_chrY_paternal_311.1;Parent=hg002_chrY_paternal_311;transcript_biotype=lnc_RNA;origin_ID=XR_002958839.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_311;gene_name=LOC112268311;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_311.1;transcript_name=hg002_chrY_paternal_311.1
HG002_chrY	Liftoff	exon	13565416	13566851	.	-	.	Parent=hg002_chrY_paternal_311.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13567461	13567583	.	-	.	Parent=hg002_chrY_paternal_311.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13565416	13567592	.	-	.	ID=hg002_chrY_paternal_311.2;Parent=hg002_chrY_paternal_311;transcript_biotype=lnc_RNA;origin_ID=XR_002958838.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_311;gene_name=LOC112268311;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_311.2;transcript_name=hg002_chrY_paternal_311.2
HG002_chrY	Liftoff	exon	13565416	13566851	.	-	.	Parent=hg002_chrY_paternal_311.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13567404	13567592	.	-	.	Parent=hg002_chrY_paternal_311.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;origin_ID=TTTY15;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.230_0
HG002_chrY	Liftoff	transcript	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312.1;Parent=hg002_chrY_paternal_312;transcript_biotype=lnc_RNA;origin_ID=NR_001545.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_312.1;transcript_name=hg002_chrY_paternal_312.1
HG002_chrY	Liftoff	exon	13566452	13566806	.	+	.	Parent=hg002_chrY_paternal_312.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13568740	13568786	.	+	.	Parent=hg002_chrY_paternal_312.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13590611	13590704	.	+	.	Parent=hg002_chrY_paternal_312.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13591562	13596331	.	+	.	Parent=hg002_chrY_paternal_312.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312.2;Parent=hg002_chrY_paternal_312;transcript_biotype=lnc_RNA;origin_ID=NR_174085.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_312.2;transcript_name=hg002_chrY_paternal_312.2
HG002_chrY	Liftoff	exon	13566452	13566806	.	+	.	Parent=hg002_chrY_paternal_312.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13590611	13590704	.	+	.	Parent=hg002_chrY_paternal_312.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13591562	13596331	.	+	.	Parent=hg002_chrY_paternal_312.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312.3;Parent=hg002_chrY_paternal_312;transcript_biotype=lnc_RNA;origin_ID=NR_174086.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_312.3;transcript_name=hg002_chrY_paternal_312.3
HG002_chrY	Liftoff	exon	13566452	13566806	.	+	.	Parent=hg002_chrY_paternal_312.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13590611	13590704	.	+	.	Parent=hg002_chrY_paternal_312.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13591783	13596331	.	+	.	Parent=hg002_chrY_paternal_312.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312.4;Parent=hg002_chrY_paternal_312;transcript_biotype=lnc_RNA;origin_ID=NR_174087.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_312.4;transcript_name=hg002_chrY_paternal_312.4
HG002_chrY	Liftoff	exon	13566452	13566806	.	+	.	Parent=hg002_chrY_paternal_312.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13568740	13568786	.	+	.	Parent=hg002_chrY_paternal_312.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13590611	13590704	.	+	.	Parent=hg002_chrY_paternal_312.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13591783	13596331	.	+	.	Parent=hg002_chrY_paternal_312.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13566452	13596331	.	+	.	ID=hg002_chrY_paternal_312.5;Parent=hg002_chrY_paternal_312;transcript_biotype=lnc_RNA;origin_ID=NR_174088.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_312;gene_name=TTTY15;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_312.5;transcript_name=hg002_chrY_paternal_312.5
HG002_chrY	Liftoff	exon	13566452	13566806	.	+	.	Parent=hg002_chrY_paternal_312.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13568740	13568786	.	+	.	Parent=hg002_chrY_paternal_312.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13590611	13590704	.	+	.	Parent=hg002_chrY_paternal_312.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13594424	13596331	.	+	.	Parent=hg002_chrY_paternal_312.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	13605329	13764936	.	+	.	ID=hg002_chrY_paternal_313;gene_name=USP9Y;gene_biotype=protein_coding;origin_ID=USP9Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.231_0
HG002_chrY	Liftoff	transcript	13605329	13764936	.	+	.	ID=hg002_chrY_paternal_313.1;Parent=hg002_chrY_paternal_313;transcript_biotype=protein_coding;origin_ID=NM_004654.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_313;gene_name=USP9Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_313.1;transcript_name=hg002_chrY_paternal_313.1
HG002_chrY	Liftoff	exon	13605329	13606153	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13612736	13612795	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13613490	13613645	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13624692	13624840	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13626210	13626289	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13629215	13629327	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13630677	13630895	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13639714	13639829	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640100	13640351	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640513	13640651	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13642259	13642411	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13643627	13643731	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13661294	13661500	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13662608	13662744	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13664586	13664719	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13675171	13675258	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13677686	13678028	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	13679574	13679669	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	13680752	13680963	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682122	13682362	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682709	13682858	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	13683629	13683749	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690306	13690436	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690624	13690902	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	13694509	13694634	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	13695601	13695726	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	13697134	13697303	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714281	13714389	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714774	13714920	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	13715737	13715883	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	13716932	13717154	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	13720226	13720446	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	exon	13722522	13722712	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	exon	13737787	13737960	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	exon	13742010	13742151	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	exon	13743963	13744713	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	exon	13745109	13745232	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	exon	13746337	13746562	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	exon	13747161	13747290	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	exon	13750430	13750615	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751030	13751250	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751336	13751424	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760437	13760593	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760730	13760942	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	exon	13761663	13761758	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	exon	13763376	13764936	.	+	.	Parent=hg002_chrY_paternal_313.1;exon_number=46;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13613550	13613645	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13624692	13624840	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13626210	13626289	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13629215	13629327	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13630677	13630895	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13639714	13639829	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640100	13640351	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640513	13640651	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13642259	13642411	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13643627	13643731	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13661294	13661500	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13662608	13662744	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13664586	13664719	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13675171	13675258	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13677686	13678028	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13679574	13679669	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13680752	13680963	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682122	13682362	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682709	13682858	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13683629	13683749	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690306	13690436	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690624	13690902	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13694509	13694634	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13695601	13695726	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13697134	13697303	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714281	13714389	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714774	13714920	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13715737	13715883	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13716932	13717154	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13720226	13720446	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13722522	13722712	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13737787	13737960	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13742010	13742151	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13743963	13744713	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13745109	13745232	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13746337	13746562	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13747161	13747290	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13750430	13750615	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751030	13751250	.	+	2	Parent=hg002_chrY_paternal_313.1;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751336	13751424	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760437	13760593	.	+	1	Parent=hg002_chrY_paternal_313.1;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760730	13760942	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13761663	13761758	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13763376	13763513	.	+	0	Parent=hg002_chrY_paternal_313.1;exon_number=46;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13611955	13764936	.	+	.	ID=hg002_chrY_paternal_313.2;Parent=hg002_chrY_paternal_313;transcript_biotype=protein_coding;origin_ID=XM_047442772.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_313;gene_name=USP9Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_313.2;transcript_name=hg002_chrY_paternal_313.2
HG002_chrY	Liftoff	exon	13611955	13611983	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13612736	13612795	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13613490	13613645	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13624692	13624840	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13626210	13626289	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13629215	13629327	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13630677	13630895	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13639714	13639829	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640100	13640351	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640513	13640651	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13642259	13642411	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13643627	13643731	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13661294	13661500	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13662608	13662744	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13664586	13664719	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13675171	13675258	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13677686	13678028	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	13679574	13679669	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	13680752	13680963	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682122	13682362	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682709	13682858	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	13683629	13683749	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690306	13690436	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690624	13690902	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	13694509	13694634	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	13695601	13695726	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	13697134	13697303	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714281	13714389	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714774	13714920	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	13715737	13715883	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	13716932	13717154	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	13720226	13720446	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	exon	13722522	13722712	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	exon	13737787	13737960	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	exon	13742010	13742151	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	exon	13743963	13744713	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	exon	13745109	13745232	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	exon	13746337	13746562	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	exon	13747161	13747290	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	exon	13750430	13750615	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751030	13751250	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751336	13751424	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760437	13760593	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760730	13760942	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	exon	13761663	13761758	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	exon	13763376	13764936	.	+	.	Parent=hg002_chrY_paternal_313.2;exon_number=46;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13613550	13613645	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13624692	13624840	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13626210	13626289	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13629215	13629327	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13630677	13630895	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13639714	13639829	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640100	13640351	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640513	13640651	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13642259	13642411	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13643627	13643731	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13661294	13661500	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13662608	13662744	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13664586	13664719	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13675171	13675258	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13677686	13678028	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13679574	13679669	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13680752	13680963	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682122	13682362	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682709	13682858	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13683629	13683749	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690306	13690436	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690624	13690902	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13694509	13694634	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13695601	13695726	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13697134	13697303	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714281	13714389	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714774	13714920	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13715737	13715883	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13716932	13717154	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13720226	13720446	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13722522	13722712	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13737787	13737960	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13742010	13742151	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13743963	13744713	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13745109	13745232	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13746337	13746562	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13747161	13747290	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13750430	13750615	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751030	13751250	.	+	2	Parent=hg002_chrY_paternal_313.2;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751336	13751424	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760437	13760593	.	+	1	Parent=hg002_chrY_paternal_313.2;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760730	13760942	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13761663	13761758	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13763376	13763513	.	+	0	Parent=hg002_chrY_paternal_313.2;exon_number=46;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13613558	13764936	.	+	.	ID=hg002_chrY_paternal_313.3;Parent=hg002_chrY_paternal_313;transcript_biotype=protein_coding;origin_ID=XM_047442771.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_313;gene_name=USP9Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_313.3;transcript_name=hg002_chrY_paternal_313.3
HG002_chrY	Liftoff	exon	13613558	13613645	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13618742	13618892	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13624692	13624840	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13626210	13626289	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13629215	13629327	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13630677	13630895	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13639714	13639829	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640100	13640351	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13640513	13640651	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13642259	13642411	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13643627	13643731	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13661294	13661500	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13662608	13662744	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13664586	13664719	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13675171	13675258	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13677686	13678028	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13679574	13679669	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	13680752	13680963	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682122	13682362	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	13682709	13682858	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	13683629	13683749	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690306	13690436	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	13690624	13690902	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	13694509	13694634	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	13695601	13695726	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	13697134	13697303	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714281	13714389	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	13714774	13714920	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	13715737	13715883	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	13716932	13717154	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	13720226	13720446	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	13722522	13722712	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	exon	13737787	13737960	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	exon	13742010	13742151	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	exon	13743963	13744713	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	exon	13745109	13745232	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	exon	13746337	13746562	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	exon	13747161	13747290	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	exon	13750430	13750615	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751030	13751250	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	exon	13751336	13751424	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760437	13760593	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	exon	13760730	13760942	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	exon	13761663	13761758	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	exon	13763376	13764936	.	+	.	Parent=hg002_chrY_paternal_313.3;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13624830	13624840	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13626210	13626289	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13629215	13629327	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13630677	13630895	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13639714	13639829	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640100	13640351	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13640513	13640651	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13642259	13642411	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13643627	13643731	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13661294	13661500	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13662608	13662744	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13664586	13664719	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13675171	13675258	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13677686	13678028	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13679574	13679669	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13680752	13680963	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682122	13682362	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13682709	13682858	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13683629	13683749	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690306	13690436	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13690624	13690902	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13694509	13694634	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13695601	13695726	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13697134	13697303	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714281	13714389	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13714774	13714920	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13715737	13715883	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13716932	13717154	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13720226	13720446	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13722522	13722712	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13737787	13737960	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=33;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13742010	13742151	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=34;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13743963	13744713	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=35;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13745109	13745232	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=36;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13746337	13746562	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=37;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13747161	13747290	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=38;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13750430	13750615	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=39;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751030	13751250	.	+	2	Parent=hg002_chrY_paternal_313.3;exon_number=40;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13751336	13751424	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=41;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760437	13760593	.	+	1	Parent=hg002_chrY_paternal_313.3;exon_number=42;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13760730	13760942	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=43;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13761663	13761758	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=44;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13763376	13763513	.	+	0	Parent=hg002_chrY_paternal_313.3;exon_number=45;extra_copy_number=0
HG002_chrY	Liftoff	gene	13705443	13708360	.	-	.	ID=hg002_chrY_paternal_314;gene_name=CDY4P;gene_biotype=pseudogene;origin_ID=CDY4P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.232_0
HG002_chrY	Liftoff	gene	13808093	13824572	.	+	.	ID=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;origin_ID=DDX3Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=8;extra_copy_number=0;copy_num_ID=REF.chrY.233_0
HG002_chrY	Liftoff	transcript	13808093	13824572	.	+	.	ID=hg002_chrY_paternal_315.1;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=NM_001122665.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.1;transcript_name=hg002_chrY_paternal_315.1
HG002_chrY	Liftoff	exon	13808093	13808508	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13809029	13809075	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809031	13809075	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821001	13821154	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808093	13824572	.	+	.	ID=hg002_chrY_paternal_315.2;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=XM_047442775.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.2;transcript_name=hg002_chrY_paternal_315.2
HG002_chrY	Liftoff	exon	13808093	13808508	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13808952	13809075	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809031	13809075	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821001	13821154	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13821023	.	+	.	ID=hg002_chrY_paternal_315.3;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=XM_047442777.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.3;transcript_name=hg002_chrY_paternal_315.3
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820941	13821023	.	+	.	Parent=hg002_chrY_paternal_315.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809031	13809075	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820941	13820948	.	+	2	Parent=hg002_chrY_paternal_315.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.4;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136718.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.4;transcript_name=hg002_chrY_paternal_315.4
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13817156	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.5;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136719.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.5;transcript_name=hg002_chrY_paternal_315.5
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.6;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136720.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.6;transcript_name=hg002_chrY_paternal_315.6
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821070	13821154	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.7;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136721.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.7;transcript_name=hg002_chrY_paternal_315.7
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819178	13819321	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.8;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=NM_001324195.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.8;transcript_name=hg002_chrY_paternal_315.8
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821070	13821154	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809031	13809075	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821070	13821154	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.9;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=NM_004660.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.9;transcript_name=hg002_chrY_paternal_315.9
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809031	13809075	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821001	13821154	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.10;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136716.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.10;transcript_name=hg002_chrY_paternal_315.10
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13808962	13824572	.	+	.	ID=hg002_chrY_paternal_315.11;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136717.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.11;transcript_name=hg002_chrY_paternal_315.11
HG002_chrY	Liftoff	exon	13808962	13809075	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13817156	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13809799	13824572	.	+	.	ID=hg002_chrY_paternal_315.12;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136722.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.12;transcript_name=hg002_chrY_paternal_315.12
HG002_chrY	Liftoff	exon	13809799	13809909	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13817156	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.12;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13809799	13824572	.	+	.	ID=hg002_chrY_paternal_315.13;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136723.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.13;transcript_name=hg002_chrY_paternal_315.13
HG002_chrY	Liftoff	exon	13809799	13809909	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13817156	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.13;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13809799	13824572	.	+	.	ID=hg002_chrY_paternal_315.14;Parent=hg002_chrY_paternal_315;transcript_biotype=transcript;origin_ID=NR_136724.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.14;transcript_name=hg002_chrY_paternal_315.14
HG002_chrY	Liftoff	exon	13809799	13809909	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13819321	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.14;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13809799	13824572	.	+	.	ID=hg002_chrY_paternal_315.15;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=XM_047442776.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.15;transcript_name=hg002_chrY_paternal_315.15
HG002_chrY	Liftoff	exon	13809799	13809909	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821070	13821154	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.15;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809874	13809909	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.15;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821070	13821154	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.15;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.15;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13809815	13824572	.	+	.	ID=hg002_chrY_paternal_315.16;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=NM_001302552.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.16;transcript_name=hg002_chrY_paternal_315.16
HG002_chrY	Liftoff	exon	13809815	13809909	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13811631	13811688	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13815933	13816062	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.16;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13809874	13809909	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13811631	13811688	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13813454	13813501	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13815933	13816062	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13816821	13816976	.	+	1	Parent=hg002_chrY_paternal_315.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817057	13817156	.	+	1	Parent=hg002_chrY_paternal_315.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817812	13817947	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.16;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821001	13821154	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.16;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.16;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	transcript	13811663	13824572	.	+	.	ID=hg002_chrY_paternal_315.17;Parent=hg002_chrY_paternal_315;transcript_biotype=protein_coding;origin_ID=XM_047442778.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_315;gene_name=DDX3Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_315.17;transcript_name=hg002_chrY_paternal_315.17
HG002_chrY	Liftoff	exon	13811663	13811688	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	13813454	13813501	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	13816821	13816976	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817057	13817156	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	13817812	13817947	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818658	13818743	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	13818978	13819076	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819161	13819321	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819724	13819868	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	13819977	13820121	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820355	13820536	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	13820611	13820728	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821001	13821154	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	13821497	13821636	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	13822137	13824572	.	+	.	Parent=hg002_chrY_paternal_315.17;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13817827	13817947	.	+	0	Parent=hg002_chrY_paternal_315.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818658	13818743	.	+	2	Parent=hg002_chrY_paternal_315.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13818978	13819076	.	+	0	Parent=hg002_chrY_paternal_315.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819161	13819321	.	+	0	Parent=hg002_chrY_paternal_315.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819724	13819868	.	+	1	Parent=hg002_chrY_paternal_315.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13819977	13820121	.	+	0	Parent=hg002_chrY_paternal_315.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820355	13820536	.	+	2	Parent=hg002_chrY_paternal_315.17;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13820611	13820728	.	+	0	Parent=hg002_chrY_paternal_315.17;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821001	13821154	.	+	2	Parent=hg002_chrY_paternal_315.17;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13821497	13821636	.	+	1	Parent=hg002_chrY_paternal_315.17;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	13822137	13822216	.	+	2	Parent=hg002_chrY_paternal_315.17;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	gene	13833950	13852278	.	-	.	ID=hg002_chrY_paternal_316;gene_name=CASKP1;gene_biotype=pseudogene;origin_ID=CASKP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.234_0
HG002_chrY	Liftoff	gene	13998899	14001820	.	+	.	ID=hg002_chrY_paternal_317;gene_name=SFPQP1;gene_biotype=pseudogene;origin_ID=SFPQP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.235_0
HG002_chrY	Liftoff	gene	14015420	14028172	.	+	.	ID=hg002_chrY_paternal_318;gene_name=LOC112268312;gene_biotype=lncRNA;origin_ID=LOC112268312;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.236_0
HG002_chrY	Liftoff	transcript	14015420	14022981	.	+	.	ID=hg002_chrY_paternal_318.1;Parent=hg002_chrY_paternal_318;transcript_biotype=lnc_RNA;origin_ID=XR_002958842.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_318;gene_name=LOC112268312;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_318.1;transcript_name=hg002_chrY_paternal_318.1
HG002_chrY	Liftoff	exon	14015420	14015508	.	+	.	Parent=hg002_chrY_paternal_318.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	14015695	14015857	.	+	.	Parent=hg002_chrY_paternal_318.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14021783	14022981	.	+	.	Parent=hg002_chrY_paternal_318.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14015420	14028172	.	+	.	ID=hg002_chrY_paternal_318.2;Parent=hg002_chrY_paternal_318;transcript_biotype=lnc_RNA;origin_ID=XR_002958844.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_318;gene_name=LOC112268312;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_318.2;transcript_name=hg002_chrY_paternal_318.2
HG002_chrY	Liftoff	exon	14015420	14015508	.	+	.	Parent=hg002_chrY_paternal_318.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	14015695	14015857	.	+	.	Parent=hg002_chrY_paternal_318.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14021783	14021918	.	+	.	Parent=hg002_chrY_paternal_318.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14027806	14028172	.	+	.	Parent=hg002_chrY_paternal_318.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14015542	14022981	.	+	.	ID=hg002_chrY_paternal_318.3;Parent=hg002_chrY_paternal_318;transcript_biotype=lnc_RNA;origin_ID=XR_002958843.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_318;gene_name=LOC112268312;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_318.3;transcript_name=hg002_chrY_paternal_318.3
HG002_chrY	Liftoff	exon	14015542	14015560	.	+	.	Parent=hg002_chrY_paternal_318.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	14015695	14015857	.	+	.	Parent=hg002_chrY_paternal_318.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14021783	14022981	.	+	.	Parent=hg002_chrY_paternal_318.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	14054067	14064743	.	-	.	ID=hg002_chrY_paternal_319;gene_name=TAB3P1;gene_biotype=pseudogene;origin_ID=TAB3P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.237_0
HG002_chrY	Liftoff	gene	14133381	14133998	.	+	.	ID=hg002_chrY_paternal_320;gene_name=DPPA2P1;gene_biotype=pseudogene;origin_ID=DPPA2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.238_0
HG002_chrY	Liftoff	gene	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;origin_ID=UTY;coverage=1.0;sequence_ID=1.0;valid_ORFs=67;extra_copy_number=0;copy_num_ID=REF.chrY.239_0
HG002_chrY	Liftoff	transcript	14136421	14382541	.	-	.	ID=hg002_chrY_paternal_321.1;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400170.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.1;transcript_name=hg002_chrY_paternal_321.1
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14382541	.	-	.	ID=hg002_chrY_paternal_321.2;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400171.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.2;transcript_name=hg002_chrY_paternal_321.2
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14382541	.	-	.	ID=hg002_chrY_paternal_321.3;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400173.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.3;transcript_name=hg002_chrY_paternal_321.3
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14382541	.	-	.	ID=hg002_chrY_paternal_321.4;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_174404.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.4;transcript_name=hg002_chrY_paternal_321.4
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.5;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531442.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.5;transcript_name=hg002_chrY_paternal_321.5
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.6;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531443.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.6;transcript_name=hg002_chrY_paternal_321.6
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.7;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531445.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.7;transcript_name=hg002_chrY_paternal_321.7
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.8;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531446.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.8;transcript_name=hg002_chrY_paternal_321.8
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.9;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531447.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.9;transcript_name=hg002_chrY_paternal_321.9
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.10;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531448.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.10;transcript_name=hg002_chrY_paternal_321.10
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.11;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531451.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.11;transcript_name=hg002_chrY_paternal_321.11
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.12;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442746.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.12;transcript_name=hg002_chrY_paternal_321.12
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14136421	14383178	.	-	.	ID=hg002_chrY_paternal_321.13;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531441.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.13;transcript_name=hg002_chrY_paternal_321.13
HG002_chrY	Liftoff	exon	14136421	14137352	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14136912	14137352	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14137102	14383178	.	-	.	ID=hg002_chrY_paternal_321.14;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442748.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.14;transcript_name=hg002_chrY_paternal_321.14
HG002_chrY	Liftoff	exon	14137102	14153712	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14137102	14383178	.	-	.	ID=hg002_chrY_paternal_321.15;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442749.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.15;transcript_name=hg002_chrY_paternal_321.15
HG002_chrY	Liftoff	exon	14137102	14153712	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14137102	14383178	.	-	.	ID=hg002_chrY_paternal_321.16;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442751.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.16;transcript_name=hg002_chrY_paternal_321.16
HG002_chrY	Liftoff	exon	14137102	14153712	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14137102	14383178	.	-	.	ID=hg002_chrY_paternal_321.17;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442752.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.17;transcript_name=hg002_chrY_paternal_321.17
HG002_chrY	Liftoff	exon	14137102	14153712	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14137102	14383178	.	-	.	ID=hg002_chrY_paternal_321.18;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442754.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.18;transcript_name=hg002_chrY_paternal_321.18
HG002_chrY	Liftoff	exon	14137102	14153712	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.18;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.18;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.19;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258250.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.19;transcript_name=hg002_chrY_paternal_321.19
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263003	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.19;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263003	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.19;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.19;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.20;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258251.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.20;transcript_name=hg002_chrY_paternal_321.20
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.20;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.20;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.20;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.21;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258252.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.21;transcript_name=hg002_chrY_paternal_321.21
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.21;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.21;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.22;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258253.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.22;transcript_name=hg002_chrY_paternal_321.22
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.22;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.22;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.23;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258254.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.23;transcript_name=hg002_chrY_paternal_321.23
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.23;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.23;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.23;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.24;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258255.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.24;transcript_name=hg002_chrY_paternal_321.24
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.24;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.24;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.24;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.25;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258256.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.25;transcript_name=hg002_chrY_paternal_321.25
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.25;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.25;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.25;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.26;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258257.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.26;transcript_name=hg002_chrY_paternal_321.26
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.26;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.26;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.26;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.27;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258258.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.27;transcript_name=hg002_chrY_paternal_321.27
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.27;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.27;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.27;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.27;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.28;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258259.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.28;transcript_name=hg002_chrY_paternal_321.28
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263003	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.28;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263003	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.28;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.28;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.28;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.29;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258260.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.29;transcript_name=hg002_chrY_paternal_321.29
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.29;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.29;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.29;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.29;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.30;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258261.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.30;transcript_name=hg002_chrY_paternal_321.30
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.30;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.30;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.30;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.30;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.31;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258262.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.31;transcript_name=hg002_chrY_paternal_321.31
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.31;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.31;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.31;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.31;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.32;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258263.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.32;transcript_name=hg002_chrY_paternal_321.32
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.32;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.32;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.32;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.32;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.33;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258264.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.33;transcript_name=hg002_chrY_paternal_321.33
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263003	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.33;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263003	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.33;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.33;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.33;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.34;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258265.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.34;transcript_name=hg002_chrY_paternal_321.34
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.34;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.34;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.34;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.34;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.34;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.34;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.34;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.35;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258266.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.35;transcript_name=hg002_chrY_paternal_321.35
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.35;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.35;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.35;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.35;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.36;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258267.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.36;transcript_name=hg002_chrY_paternal_321.36
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.36;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.36;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.36;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.36;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.37;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258268.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.37;transcript_name=hg002_chrY_paternal_321.37
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.37;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.37;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.37;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.37;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.38;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258269.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.38;transcript_name=hg002_chrY_paternal_321.38
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.38;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.38;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.38;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.38;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.39;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258270.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.39;transcript_name=hg002_chrY_paternal_321.39
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.39;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257898	14257921	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.39;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.39;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.39;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.40;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_007125.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.40;transcript_name=hg002_chrY_paternal_321.40
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.40;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.40;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.40;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.40;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.41;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047596.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.41;transcript_name=hg002_chrY_paternal_321.41
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.41;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.42;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047597.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.42;transcript_name=hg002_chrY_paternal_321.42
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.42;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.43;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047598.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.43;transcript_name=hg002_chrY_paternal_321.43
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271784	14271872	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.43;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.44;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047599.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.44;transcript_name=hg002_chrY_paternal_321.44
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14236741	14236863	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.44;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.45;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047600.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.45;transcript_name=hg002_chrY_paternal_321.45
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14258051	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258161	14258226	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.45;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.46;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047601.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.46;transcript_name=hg002_chrY_paternal_321.46
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238323	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.46;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.47;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047602.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.47;transcript_name=hg002_chrY_paternal_321.47
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.47;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.48;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047603.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.48;transcript_name=hg002_chrY_paternal_321.48
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14378411	14378533	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.48;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.49;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047604.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.49;transcript_name=hg002_chrY_paternal_321.49
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238323	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.49;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.50;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047605.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.50;transcript_name=hg002_chrY_paternal_321.50
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14180766	14180870	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263003	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.50;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.51;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047606.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.51;transcript_name=hg002_chrY_paternal_321.51
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260834	14260969	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.51;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.52;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047607.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.52;transcript_name=hg002_chrY_paternal_321.52
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260834	14261044	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.52;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.53;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047608.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.53;transcript_name=hg002_chrY_paternal_321.53
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263003	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.53;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.54;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047609.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.54;transcript_name=hg002_chrY_paternal_321.54
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14258051	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.54;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.55;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047610.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.55;transcript_name=hg002_chrY_paternal_321.55
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.55;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.56;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047611.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.56;transcript_name=hg002_chrY_paternal_321.56
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.56;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.57;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047612.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.57;transcript_name=hg002_chrY_paternal_321.57
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.57;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.58;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047613.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.58;transcript_name=hg002_chrY_paternal_321.58
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.58;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.59;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047614.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.59;transcript_name=hg002_chrY_paternal_321.59
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202525	14202592	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14302463	14302576	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.59;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.60;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047615.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.60;transcript_name=hg002_chrY_paternal_321.60
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202525	14202592	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261044	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.60;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.61;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047616.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.61;transcript_name=hg002_chrY_paternal_321.61
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208009	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14302463	14302576	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.61;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.62;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047617.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.62;transcript_name=hg002_chrY_paternal_321.62
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14206706	14206734	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228866	14228873	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.62;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.63;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047618.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.63;transcript_name=hg002_chrY_paternal_321.63
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=32;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202501	14202592	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257615	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.63;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.64;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047619.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.64;transcript_name=hg002_chrY_paternal_321.64
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261044	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.64;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.65;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047620.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.65;transcript_name=hg002_chrY_paternal_321.65
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.65;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.66;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047621.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.66;transcript_name=hg002_chrY_paternal_321.66
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228866	14228873	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.66;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.67;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047622.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.67;transcript_name=hg002_chrY_paternal_321.67
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.67;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.68;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047623.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.68;transcript_name=hg002_chrY_paternal_321.68
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202525	14202592	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.68;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.69;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047624.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.69;transcript_name=hg002_chrY_paternal_321.69
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14302463	14302576	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.69;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.70;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047625.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.70;transcript_name=hg002_chrY_paternal_321.70
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.70;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.71;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047626.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.71;transcript_name=hg002_chrY_paternal_321.71
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.71;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.72;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047627.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.72;transcript_name=hg002_chrY_paternal_321.72
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238323	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.72;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.73;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047628.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.73;transcript_name=hg002_chrY_paternal_321.73
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.73;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.74;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047629.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.74;transcript_name=hg002_chrY_paternal_321.74
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14225625	14225891	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.74;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.75;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047630.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.75;transcript_name=hg002_chrY_paternal_321.75
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.75;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.76;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047631.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.76;transcript_name=hg002_chrY_paternal_321.76
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202501	14202592	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.76;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.77;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047632.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.77;transcript_name=hg002_chrY_paternal_321.77
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202525	14202592	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14257921	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14342213	14342292	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.77;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.78;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047633.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.78;transcript_name=hg002_chrY_paternal_321.78
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257898	14258051	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258161	14258226	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.78;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.79;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047634.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.79;transcript_name=hg002_chrY_paternal_321.79
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228866	14228873	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.79;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.80;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047635.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.80;transcript_name=hg002_chrY_paternal_321.80
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271784	14271872	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.80;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.81;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047636.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.81;transcript_name=hg002_chrY_paternal_321.81
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.81;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.82;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047637.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.82;transcript_name=hg002_chrY_paternal_321.82
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261044	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.82;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.83;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047638.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.83;transcript_name=hg002_chrY_paternal_321.83
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271784	14271872	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.83;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.84;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047639.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.84;transcript_name=hg002_chrY_paternal_321.84
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.84;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.85;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047640.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.85;transcript_name=hg002_chrY_paternal_321.85
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228866	14228873	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.85;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.86;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047641.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.86;transcript_name=hg002_chrY_paternal_321.86
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.86;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.87;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047642.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.87;transcript_name=hg002_chrY_paternal_321.87
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14180766	14180870	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.87;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.88;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047643.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.88;transcript_name=hg002_chrY_paternal_321.88
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238323	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.88;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.89;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047644.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.89;transcript_name=hg002_chrY_paternal_321.89
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261044	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.89;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.90;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047645.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.90;transcript_name=hg002_chrY_paternal_321.90
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14306307	14306412	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.90;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.91;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047646.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.91;transcript_name=hg002_chrY_paternal_321.91
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.91;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.92;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_047647.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.92;transcript_name=hg002_chrY_paternal_321.92
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262466	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.92;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.93;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531453.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.93;transcript_name=hg002_chrY_paternal_321.93
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.93;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.93;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.93;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.93;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.94;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531455.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.94;transcript_name=hg002_chrY_paternal_321.94
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.94;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.94;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.94;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.94;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150904	14383178	.	-	.	ID=hg002_chrY_paternal_321.95;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442750.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.95;transcript_name=hg002_chrY_paternal_321.95
HG002_chrY	Liftoff	exon	14150904	14152407	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.95;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.95;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.95;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.95;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14382541	.	-	.	ID=hg002_chrY_paternal_321.96;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400178.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.96;transcript_name=hg002_chrY_paternal_321.96
HG002_chrY	Liftoff	exon	14150910	14152407	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153527	14153712	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.96;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153530	14153712	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.96;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.96;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.96;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14382541	.	-	.	ID=hg002_chrY_paternal_321.97;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400181.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.97;transcript_name=hg002_chrY_paternal_321.97
HG002_chrY	Liftoff	exon	14150910	14152337	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.97;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152311	14152337	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.97;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.97;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.97;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14382541	.	-	.	ID=hg002_chrY_paternal_321.98;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001258249.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.98;transcript_name=hg002_chrY_paternal_321.98
HG002_chrY	Liftoff	exon	14150910	14152407	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.98;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.98;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.98;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.98;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14382541	.	-	.	ID=hg002_chrY_paternal_321.99;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400175.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.99;transcript_name=hg002_chrY_paternal_321.99
HG002_chrY	Liftoff	exon	14150910	14152337	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.99;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152311	14152337	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.99;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.99;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.99;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14382541	.	-	.	ID=hg002_chrY_paternal_321.100;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400177.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.100;transcript_name=hg002_chrY_paternal_321.100
HG002_chrY	Liftoff	exon	14150910	14152407	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.100;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152381	14152407	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.100;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.100;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.100;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14383178	.	-	.	ID=hg002_chrY_paternal_321.101;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531454.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.101;transcript_name=hg002_chrY_paternal_321.101
HG002_chrY	Liftoff	exon	14150910	14152337	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.101;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152311	14152337	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=31;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.101;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.101;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.101;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14383178	.	-	.	ID=hg002_chrY_paternal_321.102;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442747.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.102;transcript_name=hg002_chrY_paternal_321.102
HG002_chrY	Liftoff	exon	14150910	14152337	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.102;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152311	14152337	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.102;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.102;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.102;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14150910	14383178	.	-	.	ID=hg002_chrY_paternal_321.103;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442753.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.103;transcript_name=hg002_chrY_paternal_321.103
HG002_chrY	Liftoff	exon	14150910	14152337	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14153542	14153712	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.103;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14152311	14152337	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14153542	14153712	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14162803	14162929	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.103;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.103;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.103;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14162803	14383178	.	-	.	ID=hg002_chrY_paternal_321.104;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531459.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.104;transcript_name=hg002_chrY_paternal_321.104
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=30;extra_copy_number=0
HG002_chrY	Liftoff	exon	14180766	14180870	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.104;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14180789	14180870	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.104;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.104;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.104;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14162803	14383178	.	-	.	ID=hg002_chrY_paternal_321.105;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442755.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.105;transcript_name=hg002_chrY_paternal_321.105
HG002_chrY	Liftoff	exon	14162803	14162929	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=29;extra_copy_number=0
HG002_chrY	Liftoff	exon	14180766	14180870	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14200232	14200373	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.105;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14180789	14180870	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200232	14200373	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.105;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.105;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.105;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	14189086	14190071	.	+	.	ID=hg002_chrY_paternal_322;gene_name=PSMA6P1;gene_biotype=pseudogene;origin_ID=PSMA6P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.240_0
HG002_chrY	Liftoff	transcript	14200034	14382541	.	-	.	ID=hg002_chrY_paternal_321.106;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=NR_174405.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.106;transcript_name=hg002_chrY_paternal_321.106
HG002_chrY	Liftoff	exon	14200034	14200373	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202501	14202592	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.106;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14200034	14383178	.	-	.	ID=hg002_chrY_paternal_321.107;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_182659.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.107;transcript_name=hg002_chrY_paternal_321.107
HG002_chrY	Liftoff	exon	14200034	14200373	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14201482	14201669	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.107;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200228	14200373	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14201482	14201669	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.107;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.107;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.107;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14200034	14383178	.	-	.	ID=hg002_chrY_paternal_321.108;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_017030070.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.108;transcript_name=hg002_chrY_paternal_321.108
HG002_chrY	Liftoff	exon	14200034	14200373	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.108;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200361	14200373	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.108;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.108;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.108;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.108;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.108;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.108;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.108;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14200034	14383178	.	-	.	ID=hg002_chrY_paternal_321.109;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442756.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.109;transcript_name=hg002_chrY_paternal_321.109
HG002_chrY	Liftoff	exon	14200034	14200373	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.109;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14200361	14200373	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14205401	14205515	.	-	2	Parent=hg002_chrY_paternal_321.109;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14207923	14208071	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.109;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.109;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.109;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.109;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.109;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.109;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14201615	14383178	.	-	.	ID=hg002_chrY_paternal_321.110;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=XR_007068451.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.110;transcript_name=hg002_chrY_paternal_321.110
HG002_chrY	Liftoff	exon	14201615	14201669	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202501	14202592	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.110;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14201651	14383178	.	-	.	ID=hg002_chrY_paternal_321.111;Parent=hg002_chrY_paternal_321;transcript_biotype=transcript;origin_ID=XR_007068452.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.111;transcript_name=hg002_chrY_paternal_321.111
HG002_chrY	Liftoff	exon	14201651	14201669	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	14202501	14202592	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14205401	14205515	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14207923	14208071	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.111;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14208010	14383178	.	-	.	ID=hg002_chrY_paternal_321.112;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_017030071.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.112;transcript_name=hg002_chrY_paternal_321.112
HG002_chrY	Liftoff	exon	14208010	14208071	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.112;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208226	14208244	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.112;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.112;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.112;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.112;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.112;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.112;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14208013	14383178	.	-	.	ID=hg002_chrY_paternal_321.113;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_017030073.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.113;transcript_name=hg002_chrY_paternal_321.113
HG002_chrY	Liftoff	exon	14208013	14208071	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208177	14208244	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208562	14208636	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14208710	14208774	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.113;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208226	14208244	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208562	14208636	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14208710	14208774	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.113;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.113;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.113;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.113;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.113;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.113;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.114;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400183.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.114;transcript_name=hg002_chrY_paternal_321.114
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.114;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.114;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.114;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.114;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.114;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.114;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.114;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.114;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.114;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.114;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.114;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.115;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400185.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.115;transcript_name=hg002_chrY_paternal_321.115
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.115;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.115;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.115;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.115;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.115;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.115;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.115;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.115;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.115;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.115;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.115;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.116;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400187.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.116;transcript_name=hg002_chrY_paternal_321.116
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.116;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.116;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.116;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.116;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.116;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.116;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.116;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.116;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.116;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.116;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.116;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.117;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400189.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.117;transcript_name=hg002_chrY_paternal_321.117
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.117;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.117;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.117;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.117;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.117;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.117;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.117;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.117;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.117;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.117;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.117;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.118;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400192.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.118;transcript_name=hg002_chrY_paternal_321.118
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.118;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.118;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.118;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.118;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.118;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.118;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.118;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.118;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.118;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.118;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.118;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.119;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400195.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.119;transcript_name=hg002_chrY_paternal_321.119
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.119;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.119;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.119;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.119;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.119;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.119;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.119;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.119;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.119;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.119;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.119;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14382541	.	-	.	ID=hg002_chrY_paternal_321.120;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_001400199.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.120;transcript_name=hg002_chrY_paternal_321.120
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14382541	.	-	.	Parent=hg002_chrY_paternal_321.120;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.120;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.120;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.120;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.120;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.120;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.120;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.120;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.120;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.120;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.120;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14383178	.	-	.	ID=hg002_chrY_paternal_321.121;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=NM_182660.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.121;transcript_name=hg002_chrY_paternal_321.121
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.121;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.121;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.121;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.121;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.121;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.121;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.121;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.121;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.121;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.121;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.121;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14383178	.	-	.	ID=hg002_chrY_paternal_321.122;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_011531460.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.122;transcript_name=hg002_chrY_paternal_321.122
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261142	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.122;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.122;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.122;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261142	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.122;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.122;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.122;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.122;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.122;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.122;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.122;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.122;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14225557	14383178	.	-	.	ID=hg002_chrY_paternal_321.123;Parent=hg002_chrY_paternal_321;transcript_biotype=protein_coding;origin_ID=XM_047442757.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_321;gene_name=UTY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_321.123;transcript_name=hg002_chrY_paternal_321.123
HG002_chrY	Liftoff	exon	14225557	14225891	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	14226078	14226283	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	14227124	14227229	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	14228744	14228873	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	14238086	14238858	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257309	14257356	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	14257526	14257921	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	14258446	14258541	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260400	14260492	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	14260987	14261076	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	14261611	14261745	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262290	14262509	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	14262953	14263051	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	14268790	14268916	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	14271779	14271872	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	14296384	14296418	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	14299443	14299497	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	14313517	14313637	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	14317259	14317317	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	14351525	14351574	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	14372629	14372737	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	14381762	14381825	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14382022	14383178	.	-	.	Parent=hg002_chrY_paternal_321.123;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14225637	14225891	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14226078	14226283	.	-	2	Parent=hg002_chrY_paternal_321.123;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14227124	14227229	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14228744	14228873	.	-	1	Parent=hg002_chrY_paternal_321.123;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14238086	14238858	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257309	14257356	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14257526	14257921	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14258446	14258541	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260400	14260492	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14260987	14261076	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14261611	14261745	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262290	14262509	.	-	1	Parent=hg002_chrY_paternal_321.123;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14262953	14263051	.	-	1	Parent=hg002_chrY_paternal_321.123;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14268790	14268916	.	-	2	Parent=hg002_chrY_paternal_321.123;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14271779	14271872	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14296384	14296418	.	-	2	Parent=hg002_chrY_paternal_321.123;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14299443	14299497	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14313517	14313637	.	-	1	Parent=hg002_chrY_paternal_321.123;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14317259	14317317	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14351525	14351574	.	-	2	Parent=hg002_chrY_paternal_321.123;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14372629	14372737	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14381762	14381825	.	-	1	Parent=hg002_chrY_paternal_321.123;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14382022	14382173	.	-	0	Parent=hg002_chrY_paternal_321.123;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	14381685	14381774	.	+	.	ID=hg002_chrY_paternal_323;gene_name=MIR12120;gene_biotype=miRNA;origin_ID=MIR12120;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.241_0
HG002_chrY	Liftoff	transcript	14381685	14381774	.	+	.	ID=hg002_chrY_paternal_323.1;Parent=hg002_chrY_paternal_323;transcript_biotype=primary_transcript;origin_ID=NR_162134.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_323;gene_name=MIR12120;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_323.1;transcript_name=hg002_chrY_paternal_323.1
HG002_chrY	Liftoff	exon	14381685	14381774	.	+	.	Parent=hg002_chrY_paternal_323.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	14381697	14381722	.	+	.	ID=hg002_chrY_paternal_323.2;Parent=hg002_chrY_paternal_323;transcript_biotype=miRNA;origin_ID=unassigned_transcript_3897;extra_copy_number=0;gene_id=hg002_chrY_paternal_323;gene_name=MIR12120;gene_biotype=miRNA;transcript_id=hg002_chrY_paternal_323.2;transcript_name=hg002_chrY_paternal_323.2
HG002_chrY	Liftoff	exon	14381697	14381722	.	+	.	Parent=hg002_chrY_paternal_323.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	14606348	14608473	.	+	.	ID=hg002_chrY_paternal_324;gene_name=TMSB4Y;gene_biotype=protein_coding;origin_ID=TMSB4Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.242_0
HG002_chrY	Liftoff	transcript	14606348	14608473	.	+	.	ID=hg002_chrY_paternal_324.1;Parent=hg002_chrY_paternal_324;transcript_biotype=protein_coding;origin_ID=NM_004202.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_324;gene_name=TMSB4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_324.1;transcript_name=hg002_chrY_paternal_324.1
HG002_chrY	Liftoff	exon	14606348	14606884	.	+	.	Parent=hg002_chrY_paternal_324.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	14607674	14608473	.	+	.	Parent=hg002_chrY_paternal_324.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14606785	14606884	.	+	0	Parent=hg002_chrY_paternal_324.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14607674	14607708	.	+	2	Parent=hg002_chrY_paternal_324.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	14620511	14621286	.	-	.	ID=hg002_chrY_paternal_325;gene_name=PSIP1P2;gene_biotype=pseudogene;origin_ID=PSIP1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.243_0
HG002_chrY	Liftoff	gene	14654155	14822492	.	+	.	ID=hg002_chrY_paternal_326;gene_name=ANOS2P;gene_biotype=pseudogene;origin_ID=ANOS2P;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.244_0
HG002_chrY	Liftoff	gene	14888208	14888909	.	-	.	ID=hg002_chrY_paternal_327;gene_name=VCY;gene_biotype=protein_coding;origin_ID=VCY;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.245_0
HG002_chrY	Liftoff	transcript	14888208	14888909	.	-	.	ID=hg002_chrY_paternal_327.1;Parent=hg002_chrY_paternal_327;transcript_biotype=protein_coding;origin_ID=NM_004679.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_327;gene_name=VCY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_327.1;transcript_name=hg002_chrY_paternal_327.1
HG002_chrY	Liftoff	exon	14888208	14888582	.	-	.	Parent=hg002_chrY_paternal_327.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	14888775	14888909	.	-	.	Parent=hg002_chrY_paternal_327.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14888307	14888582	.	-	0	Parent=hg002_chrY_paternal_327.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14888775	14888876	.	-	0	Parent=hg002_chrY_paternal_327.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	14958700	14959431	.	+	.	ID=hg002_chrY_paternal_328;gene_name=VCY1B;gene_biotype=protein_coding;origin_ID=VCY1B;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.246_0
HG002_chrY	Liftoff	transcript	14958700	14959431	.	+	.	ID=hg002_chrY_paternal_328.1;Parent=hg002_chrY_paternal_328;transcript_biotype=protein_coding;origin_ID=NM_181880.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_328;gene_name=VCY1B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_328.1;transcript_name=hg002_chrY_paternal_328.1
HG002_chrY	Liftoff	exon	14958700	14958864	.	+	.	Parent=hg002_chrY_paternal_328.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	14959057	14959431	.	+	.	Parent=hg002_chrY_paternal_328.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14958763	14958864	.	+	0	Parent=hg002_chrY_paternal_328.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	14959057	14959332	.	+	0	Parent=hg002_chrY_paternal_328.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	14983548	14983934	.	+	.	ID=hg002_chrY_paternal_329;gene_name=PNPLA4P1;gene_biotype=pseudogene;origin_ID=PNPLA4P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.247_0
HG002_chrY	Liftoff	gene	15003440	15004194	.	-	.	ID=hg002_chrY_paternal_330;gene_name=LOC100379236;gene_biotype=pseudogene;origin_ID=LOC100379236;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.248_0
HG002_chrY	Liftoff	gene	15425055	15748025	.	+	.	ID=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;origin_ID=NLGN4Y;coverage=1.0;sequence_ID=1.0;valid_ORFs=26;extra_copy_number=0;copy_num_ID=REF.chrY.249_0
HG002_chrY	Liftoff	transcript	15425055	15635994	.	+	.	ID=hg002_chrY_paternal_331.1;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_047442722.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.1;transcript_name=hg002_chrY_paternal_331.1
HG002_chrY	Liftoff	exon	15425055	15425380	.	+	.	Parent=hg002_chrY_paternal_331.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15635897	15635994	.	+	.	Parent=hg002_chrY_paternal_331.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15635897	15635982	.	+	2	Parent=hg002_chrY_paternal_331.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15425055	15748025	.	+	.	ID=hg002_chrY_paternal_331.2;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001206850.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.2;transcript_name=hg002_chrY_paternal_331.2
HG002_chrY	Liftoff	exon	15425055	15425380	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625592	15625712	.	+	0	Parent=hg002_chrY_paternal_331.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15425055	15748025	.	+	.	ID=hg002_chrY_paternal_331.3;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365586.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.3;transcript_name=hg002_chrY_paternal_331.3
HG002_chrY	Liftoff	exon	15425055	15425380	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15425055	15748025	.	+	.	ID=hg002_chrY_paternal_331.4;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365591.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.4;transcript_name=hg002_chrY_paternal_331.4
HG002_chrY	Liftoff	exon	15425055	15425380	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15425055	15748025	.	+	.	ID=hg002_chrY_paternal_331.5;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001394830.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.5;transcript_name=hg002_chrY_paternal_331.5
HG002_chrY	Liftoff	exon	15425055	15426011	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426185	15748025	.	+	.	ID=hg002_chrY_paternal_331.6;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_014893.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.6;transcript_name=hg002_chrY_paternal_331.6
HG002_chrY	Liftoff	exon	15426185	15426337	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524474	15525044	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426411	15748025	.	+	.	ID=hg002_chrY_paternal_331.7;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_006724874.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.7;transcript_name=hg002_chrY_paternal_331.7
HG002_chrY	Liftoff	exon	15426411	15426723	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426411	15748025	.	+	.	ID=hg002_chrY_paternal_331.8;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_047442720.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.8;transcript_name=hg002_chrY_paternal_331.8
HG002_chrY	Liftoff	exon	15426411	15426723	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15635994	.	+	.	ID=hg002_chrY_paternal_331.9;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_017030041.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.9;transcript_name=hg002_chrY_paternal_331.9
HG002_chrY	Liftoff	exon	15426968	15427147	.	+	.	Parent=hg002_chrY_paternal_331.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15635897	15635994	.	+	.	Parent=hg002_chrY_paternal_331.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15635897	15635982	.	+	2	Parent=hg002_chrY_paternal_331.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15635994	.	+	.	ID=hg002_chrY_paternal_331.10;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_047442721.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.10;transcript_name=hg002_chrY_paternal_331.10
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15635897	15635994	.	+	.	Parent=hg002_chrY_paternal_331.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15635897	15635982	.	+	2	Parent=hg002_chrY_paternal_331.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.11;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365584.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.11;transcript_name=hg002_chrY_paternal_331.11
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.12;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365588.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.12;transcript_name=hg002_chrY_paternal_331.12
HG002_chrY	Liftoff	exon	15426968	15427147	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.13;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365590.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.13;transcript_name=hg002_chrY_paternal_331.13
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15486627	15486728	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15490063	15490167	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.14;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365592.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.14;transcript_name=hg002_chrY_paternal_331.14
HG002_chrY	Liftoff	exon	15426968	15427147	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.15;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001365593.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.15;transcript_name=hg002_chrY_paternal_331.15
HG002_chrY	Liftoff	exon	15426968	15426996	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.15;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.15;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.15;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.15;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.15;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.16;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001394831.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.16;transcript_name=hg002_chrY_paternal_331.16
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.16;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.16;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.16;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.16;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.16;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.17;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_011531428.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.17;transcript_name=hg002_chrY_paternal_331.17
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15463034	15463113	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.17;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.17;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.17;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.17;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.17;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.17;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.18;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_011531430.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.18;transcript_name=hg002_chrY_paternal_331.18
HG002_chrY	Liftoff	exon	15426968	15426996	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.18;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.18;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.18;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.18;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.18;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.18;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15426968	15748025	.	+	.	ID=hg002_chrY_paternal_331.19;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_047442719.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.19;transcript_name=hg002_chrY_paternal_331.19
HG002_chrY	Liftoff	exon	15426968	15427375	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15463034	15463113	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.19;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.19;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.19;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.19;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.19;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15456177	15748025	.	+	.	ID=hg002_chrY_paternal_331.20;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_024452490.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.20;transcript_name=hg002_chrY_paternal_331.20
HG002_chrY	Liftoff	exon	15456177	15463113	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.20;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.20;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.20;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.20;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.20;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.20;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15485042	15748025	.	+	.	ID=hg002_chrY_paternal_331.21;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_011531427.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.21;transcript_name=hg002_chrY_paternal_331.21
HG002_chrY	Liftoff	exon	15485042	15486744	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.21;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.21;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.21;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.21;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.21;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.21;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15485042	15748025	.	+	.	ID=hg002_chrY_paternal_331.22;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_017030036.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.22;transcript_name=hg002_chrY_paternal_331.22
HG002_chrY	Liftoff	exon	15485042	15486744	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.22;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.22;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.22;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.22;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.22;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15490063	15748025	.	+	.	ID=hg002_chrY_paternal_331.23;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_011531429.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.23;transcript_name=hg002_chrY_paternal_331.23
HG002_chrY	Liftoff	exon	15490063	15490167	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.23;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.23;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.23;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.23;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.23;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.23;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15524462	15748025	.	+	.	ID=hg002_chrY_paternal_331.24;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_017030039.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.24;transcript_name=hg002_chrY_paternal_331.24
HG002_chrY	Liftoff	exon	15524462	15525044	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15603503	15603596	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15603560	15603596	.	+	0	Parent=hg002_chrY_paternal_331.24;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.24;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.24;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.24;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.24;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.24;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	15524474	15635994	.	+	.	ID=hg002_chrY_paternal_331.25;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=NM_001164238.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.25;transcript_name=hg002_chrY_paternal_331.25
HG002_chrY	Liftoff	exon	15524474	15525044	.	+	.	Parent=hg002_chrY_paternal_331.25;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.25;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15635897	15635994	.	+	.	Parent=hg002_chrY_paternal_331.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15524573	15525044	.	+	0	Parent=hg002_chrY_paternal_331.25;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15621923	15621982	.	+	2	Parent=hg002_chrY_paternal_331.25;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625560	15625712	.	+	2	Parent=hg002_chrY_paternal_331.25;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15635897	15635982	.	+	2	Parent=hg002_chrY_paternal_331.25;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	15541509	15542601	.	+	.	ID=hg002_chrY_paternal_332;gene_name=AGKP1;gene_biotype=pseudogene;origin_ID=AGKP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.250_0
HG002_chrY	Liftoff	transcript	15607249	15748025	.	+	.	ID=hg002_chrY_paternal_331.26;Parent=hg002_chrY_paternal_331;transcript_biotype=protein_coding;origin_ID=XM_017030040.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_331;gene_name=NLGN4Y;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_331.26;transcript_name=hg002_chrY_paternal_331.26
HG002_chrY	Liftoff	exon	15607249	15607269	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	15621923	15621982	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15625560	15625712	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15726585	15726770	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15732101	15732890	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	15742784	15748025	.	+	.	Parent=hg002_chrY_paternal_331.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15625592	15625712	.	+	0	Parent=hg002_chrY_paternal_331.26;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15726585	15726770	.	+	2	Parent=hg002_chrY_paternal_331.26;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15732101	15732890	.	+	2	Parent=hg002_chrY_paternal_331.26;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	15742784	15743633	.	+	1	Parent=hg002_chrY_paternal_331.26;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	gene	15696080	15706430	.	-	.	ID=hg002_chrY_paternal_333;gene_name=NLGN4Y-AS1;gene_biotype=lncRNA;origin_ID=NLGN4Y-AS1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.251_0
HG002_chrY	Liftoff	transcript	15696080	15706430	.	-	.	ID=hg002_chrY_paternal_333.1;Parent=hg002_chrY_paternal_333;transcript_biotype=lnc_RNA;origin_ID=NR_046504.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_333;gene_name=NLGN4Y-AS1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_333.1;transcript_name=hg002_chrY_paternal_333.1
HG002_chrY	Liftoff	exon	15696080	15696425	.	-	.	Parent=hg002_chrY_paternal_333.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	15701062	15701149	.	-	.	Parent=hg002_chrY_paternal_333.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	15703716	15703784	.	-	.	Parent=hg002_chrY_paternal_333.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	15706402	15706430	.	-	.	Parent=hg002_chrY_paternal_333.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	15810265	15810437	.	+	.	ID=hg002_chrY_paternal_334;gene_name=MED13P1;gene_biotype=pseudogene;origin_ID=MED13P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.252_0
HG002_chrY	Liftoff	gene	15843058	15844118	.	-	.	ID=hg002_chrY_paternal_335;gene_name=CYCSP46;gene_biotype=pseudogene;origin_ID=CYCSP46;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.253_0
HG002_chrY	Liftoff	gene	16149444	16267452	.	-	.	ID=hg002_chrY_paternal_336;gene_name=LOC107987355;gene_biotype=lncRNA;origin_ID=LOC107987355;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.254_0
HG002_chrY	Liftoff	transcript	16149444	16267452	.	-	.	ID=hg002_chrY_paternal_336.1;Parent=hg002_chrY_paternal_336;transcript_biotype=lnc_RNA;origin_ID=XR_001756089.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_336;gene_name=LOC107987355;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_336.1;transcript_name=hg002_chrY_paternal_336.1
HG002_chrY	Liftoff	exon	16149444	16149516	.	-	.	Parent=hg002_chrY_paternal_336.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	16250988	16251210	.	-	.	Parent=hg002_chrY_paternal_336.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	16267367	16267452	.	-	.	Parent=hg002_chrY_paternal_336.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	16275821	16277775	.	-	.	ID=hg002_chrY_paternal_337;gene_name=PUDPP1;gene_biotype=pseudogene;origin_ID=PUDPP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.255_0
HG002_chrY	Liftoff	gene	16449533	16469219	.	+	.	ID=hg002_chrY_paternal_338;gene_name=STSP1;gene_biotype=pseudogene;origin_ID=STSP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.256_0
HG002_chrY	Liftoff	gene	17040585	17040716	.	-	.	ID=hg002_chrY_paternal_339;gene_name=LOC124900508;gene_biotype=snoRNA;origin_ID=LOC124900508;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.257_0
HG002_chrY	Liftoff	transcript	17040585	17040716	.	-	.	ID=hg002_chrY_paternal_339.1;Parent=hg002_chrY_paternal_339;transcript_biotype=snoRNA;origin_ID=XR_007068486.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_339;gene_name=LOC124900508;gene_biotype=snoRNA;transcript_id=hg002_chrY_paternal_339.1;transcript_name=hg002_chrY_paternal_339.1
HG002_chrY	Liftoff	exon	17040585	17040716	.	-	.	Parent=hg002_chrY_paternal_339.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	17151296	17151402	.	+	.	ID=hg002_chrY_paternal_340;gene_name=RNU6-109P;gene_biotype=pseudogene;origin_ID=RNU6-109P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.258_0
HG002_chrY	Liftoff	gene	17238626	17238732	.	-	.	ID=hg002_chrY_paternal_341;gene_name=RNU6-184P;gene_biotype=pseudogene;origin_ID=RNU6-184P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.259_0
HG002_chrY	Liftoff	gene	18086795	18097076	.	+	.	ID=hg002_chrY_paternal_342;gene_name=SURF6P1;gene_biotype=pseudogene;origin_ID=SURF6P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.260_0
HG002_chrY	Liftoff	gene	18367185	18367520	.	-	.	ID=hg002_chrY_paternal_343;gene_name=ELOCP35;gene_biotype=pseudogene;origin_ID=ELOCP35;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.261_0
HG002_chrY	Liftoff	gene	18403280	18419056	.	+	.	ID=hg002_chrY_paternal_344;gene_name=FAM41AY2;gene_biotype=lncRNA;origin_ID=FAM41AY2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.262_0
HG002_chrY	Liftoff	transcript	18403280	18419056	.	+	.	ID=hg002_chrY_paternal_344.1;Parent=hg002_chrY_paternal_344;transcript_biotype=lnc_RNA;origin_ID=NR_028084.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_344;gene_name=FAM41AY2;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_344.1;transcript_name=hg002_chrY_paternal_344.1
HG002_chrY	Liftoff	exon	18403280	18403437	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	18404033	18404082	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	18415412	18415540	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	18415788	18415881	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	18416475	18416645	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	18416755	18416848	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	18417123	18417332	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	18417626	18417813	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	18418026	18418247	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	18418330	18419056	.	+	.	Parent=hg002_chrY_paternal_344.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	gene	18418910	18421745	.	-	.	ID=hg002_chrY_paternal_345;gene_name=TUBB1P1;gene_biotype=pseudogene;origin_ID=TUBB1P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.263_0
HG002_chrY	Liftoff	gene	18456461	18465721	.	-	.	ID=hg002_chrY_paternal_346;gene_name=LOC105377217;gene_biotype=lncRNA;origin_ID=LOC105377217;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.264_0
HG002_chrY	Liftoff	transcript	18456461	18465721	.	-	.	ID=hg002_chrY_paternal_346.1;Parent=hg002_chrY_paternal_346;transcript_biotype=lnc_RNA;origin_ID=XR_001756062.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_346;gene_name=LOC105377217;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_346.1;transcript_name=hg002_chrY_paternal_346.1
HG002_chrY	Liftoff	exon	18456461	18458327	.	-	.	Parent=hg002_chrY_paternal_346.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	18459038	18459166	.	-	.	Parent=hg002_chrY_paternal_346.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	18460380	18465721	.	-	.	Parent=hg002_chrY_paternal_346.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18460080	18460392	.	+	.	ID=hg002_chrY_paternal_347;gene_name=RNA5SP523;gene_biotype=pseudogene;origin_ID=RNA5SP523;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.265_0
HG002_chrY	Liftoff	gene	18461990	18462305	.	+	.	ID=hg002_chrY_paternal_348;gene_name=RNA5SP522;gene_biotype=pseudogene;origin_ID=RNA5SP522;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.266_0
HG002_chrY	Liftoff	gene	18477505	18481799	.	-	.	ID=hg002_chrY_paternal_349;gene_name=FAM224A;gene_biotype=lncRNA;origin_ID=FAM224A;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.267_0
HG002_chrY	Liftoff	transcript	18477505	18481799	.	-	.	ID=hg002_chrY_paternal_349.1;Parent=hg002_chrY_paternal_349;transcript_biotype=lnc_RNA;origin_ID=NR_002161.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_349;gene_name=FAM224A;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_349.1;transcript_name=hg002_chrY_paternal_349.1
HG002_chrY	Liftoff	exon	18477505	18477688	.	-	.	Parent=hg002_chrY_paternal_349.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	18479024	18479141	.	-	.	Parent=hg002_chrY_paternal_349.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	18481642	18481799	.	-	.	Parent=hg002_chrY_paternal_349.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18526189	18526750	.	-	.	ID=hg002_chrY_paternal_350;gene_name=CLUHP2;gene_biotype=pseudogene;origin_ID=CLUHP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.306_0
HG002_chrY	Liftoff	gene	18530842	18532057	.	+	.	ID=hg002_chrY_paternal_351;gene_name=TAF9P2;gene_biotype=pseudogene;origin_ID=TAF9P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.305_0
HG002_chrY	Liftoff	gene	18590834	18591634	.	-	.	ID=hg002_chrY_paternal_352;gene_name=LOC105377219;gene_biotype=lncRNA;origin_ID=LOC105377219;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.304_0
HG002_chrY	Liftoff	transcript	18590834	18591634	.	-	.	ID=hg002_chrY_paternal_352.1;Parent=hg002_chrY_paternal_352;transcript_biotype=lnc_RNA;origin_ID=XR_001756090.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_352;gene_name=LOC105377219;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_352.1;transcript_name=hg002_chrY_paternal_352.1
HG002_chrY	Liftoff	exon	18590834	18591290	.	-	.	Parent=hg002_chrY_paternal_352.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	18591379	18591464	.	-	.	Parent=hg002_chrY_paternal_352.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	18591552	18591634	.	-	.	Parent=hg002_chrY_paternal_352.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18595252	18602112	.	-	.	ID=hg002_chrY_paternal_353;gene_name=LOC124905303;gene_biotype=lncRNA;origin_ID=LOC124905303;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.303_0
HG002_chrY	Liftoff	transcript	18595252	18602112	.	-	.	ID=hg002_chrY_paternal_353.1;Parent=hg002_chrY_paternal_353;transcript_biotype=lnc_RNA;origin_ID=XR_007068456.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_353;gene_name=LOC124905303;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_353.1;transcript_name=hg002_chrY_paternal_353.1
HG002_chrY	Liftoff	exon	18595252	18599196	.	-	.	Parent=hg002_chrY_paternal_353.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	18599285	18600033	.	-	.	Parent=hg002_chrY_paternal_353.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	18600121	18602112	.	-	.	Parent=hg002_chrY_paternal_353.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18623518	18625516	.	+	.	ID=hg002_chrY_paternal_354;gene_name=CDY9P;gene_biotype=pseudogene;origin_ID=CDY9P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.302_0
HG002_chrY	Liftoff	gene	18628973	18629501	.	+	.	ID=hg002_chrY_paternal_355;gene_name=ELOCP36;gene_biotype=pseudogene;origin_ID=ELOCP36;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.301_0
HG002_chrY	Liftoff	gene	18632120	18646863	.	-	.	ID=hg002_chrY_paternal_356;gene_name=PRYP1;gene_biotype=pseudogene;origin_ID=PRYP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.300_0
HG002_chrY	Liftoff	gene	18658521	18660622	.	-	.	ID=hg002_chrY_paternal_357;gene_name=ACTG1P2;gene_biotype=pseudogene;origin_ID=ACTG1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.275_0
HG002_chrY	Liftoff	gene	18671304	18672884	.	-	.	ID=hg002_chrY_paternal_358;gene_name=XKRY;gene_biotype=transcribed_pseudogene;origin_ID=XKRY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.276_0
HG002_chrY	Liftoff	transcript	18671304	18672884	.	-	.	ID=hg002_chrY_paternal_358.1;Parent=hg002_chrY_paternal_358;transcript_biotype=transcript;origin_ID=NR_171026.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_358;gene_name=XKRY;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_358.1;transcript_name=hg002_chrY_paternal_358.1
HG002_chrY	Liftoff	exon	18671304	18672884	.	-	.	Parent=hg002_chrY_paternal_358.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18684435	18687239	.	+	.	ID=hg002_chrY_paternal_359;gene_name=USP9YP16;gene_biotype=pseudogene;origin_ID=USP9YP16;coverage=1.0;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.297_0
HG002_chrY	Liftoff	gene	18690539	18691907	.	-	.	ID=hg002_chrY_paternal_360;gene_name=USP9YP15;gene_biotype=pseudogene;origin_ID=USP9YP15;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.295_0
HG002_chrY	Liftoff	gene	18691327	18691486	.	-	.	ID=hg002_chrY_paternal_361;gene_name=RNU1-95P;gene_biotype=pseudogene;origin_ID=RNU1-95P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.296_0
HG002_chrY	Liftoff	gene	18698509	18703142	.	-	.	ID=hg002_chrY_paternal_362;gene_name=TRAPPC2P8;gene_biotype=pseudogene;origin_ID=TRAPPC2P8;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.294_0
HG002_chrY	Liftoff	gene	18711523	18725159	.	+	.	ID=hg002_chrY_paternal_363;gene_name=OFD1P1Y;gene_biotype=pseudogene;origin_ID=OFD1P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.293_0
HG002_chrY	Liftoff	gene	18739535	18739862	.	-	.	ID=hg002_chrY_paternal_364;gene_name=ELOCP12;gene_biotype=pseudogene;origin_ID=ELOCP12;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.292_0
HG002_chrY	Liftoff	gene	18780592	18782551	.	-	.	ID=hg002_chrY_paternal_365;gene_name=CDY2A;gene_biotype=protein_coding;origin_ID=CDY2A;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.291_0
HG002_chrY	Liftoff	transcript	18780592	18782551	.	-	.	ID=hg002_chrY_paternal_365.1;Parent=hg002_chrY_paternal_365;transcript_biotype=protein_coding;origin_ID=NM_004825.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_365;gene_name=CDY2A;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_365.1;transcript_name=hg002_chrY_paternal_365.1
HG002_chrY	Liftoff	exon	18780592	18782551	.	-	.	Parent=hg002_chrY_paternal_365.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	18780598	18782223	.	-	0	Parent=hg002_chrY_paternal_365.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18784329	18786462	.	-	.	ID=hg002_chrY_paternal_366;gene_name=CDY6P;gene_biotype=pseudogene;origin_ID=CDY6P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.290_0
HG002_chrY	Liftoff	gene	18812915	18813111	.	+	.	ID=hg002_chrY_paternal_367;gene_name=USP9YP7;gene_biotype=pseudogene;origin_ID=USP9YP7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.289_0
HG002_chrY	Liftoff	gene	18814928	18824070	.	-	.	ID=hg002_chrY_paternal_368;gene_name=USP9YP34;gene_biotype=pseudogene;origin_ID=USP9YP34;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.288_0
HG002_chrY	Liftoff	gene	18854706	18857002	.	-	.	ID=hg002_chrY_paternal_369;gene_name=CDY7P;gene_biotype=pseudogene;origin_ID=CDY7P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.287_0
HG002_chrY	Liftoff	gene	18886597	18893316	.	+	.	ID=hg002_chrY_paternal_370;gene_name=USP9YP6;gene_biotype=pseudogene;origin_ID=USP9YP6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.286_0
HG002_chrY	Liftoff	gene	18897354	18899602	.	-	.	ID=hg002_chrY_paternal_371;gene_name=USP9YP32;gene_biotype=pseudogene;origin_ID=USP9YP32;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.285_0
HG002_chrY	Liftoff	gene	18924122	18926255	.	+	.	ID=hg002_chrY_paternal_372;gene_name=CDY8P;gene_biotype=pseudogene;origin_ID=CDY8P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.284_0
HG002_chrY	Liftoff	gene	18928033	18929993	.	+	.	ID=hg002_chrY_paternal_373;gene_name=CDY2B;gene_biotype=protein_coding;origin_ID=CDY2B;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.283_0
HG002_chrY	Liftoff	transcript	18928033	18929993	.	+	.	ID=hg002_chrY_paternal_373.1;Parent=hg002_chrY_paternal_373;transcript_biotype=protein_coding;origin_ID=NM_001001722.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_373;gene_name=CDY2B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_373.1;transcript_name=hg002_chrY_paternal_373.1
HG002_chrY	Liftoff	exon	18928033	18929993	.	+	.	Parent=hg002_chrY_paternal_373.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	18928361	18929986	.	+	0	Parent=hg002_chrY_paternal_373.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	18970726	18971053	.	+	.	ID=hg002_chrY_paternal_374;gene_name=ELOCP6;gene_biotype=pseudogene;origin_ID=ELOCP6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.282_0
HG002_chrY	Liftoff	gene	18982859	18999054	.	-	.	ID=hg002_chrY_paternal_375;gene_name=OFD1P2Y;gene_biotype=pseudogene;origin_ID=OFD1P2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.281_0
HG002_chrY	Liftoff	gene	19007435	19012068	.	+	.	ID=hg002_chrY_paternal_376;gene_name=TRAPPC2P3;gene_biotype=pseudogene;origin_ID=TRAPPC2P3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.280_0
HG002_chrY	Liftoff	gene	19018669	19020038	.	+	.	ID=hg002_chrY_paternal_377;gene_name=USP9YP27;gene_biotype=pseudogene;origin_ID=USP9YP27;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.278_0
HG002_chrY	Liftoff	gene	19019091	19019250	.	+	.	ID=hg002_chrY_paternal_378;gene_name=RNU1-128P;gene_biotype=pseudogene;origin_ID=RNU1-128P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.279_0
HG002_chrY	Liftoff	gene	19023329	19026114	.	-	.	ID=hg002_chrY_paternal_379;gene_name=USP9YP23;gene_biotype=pseudogene;origin_ID=USP9YP23;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.277_0
HG002_chrY	Liftoff	gene	19037686	19039266	.	+	.	ID=hg002_chrY_paternal_380;gene_name=XKRY2;gene_biotype=transcribed_pseudogene;origin_ID=XKRY2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.298_0
HG002_chrY	Liftoff	transcript	19037686	19039266	.	+	.	ID=hg002_chrY_paternal_380.1;Parent=hg002_chrY_paternal_380;transcript_biotype=transcript;origin_ID=NR_171027.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_380;gene_name=XKRY2;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_380.1;transcript_name=hg002_chrY_paternal_380.1
HG002_chrY	Liftoff	exon	19037686	19039266	.	+	.	Parent=hg002_chrY_paternal_380.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19050047	19051955	.	+	.	ID=hg002_chrY_paternal_381;gene_name=ACTG1P11;gene_biotype=pseudogene;origin_ID=ACTG1P11;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.299_0
HG002_chrY	Liftoff	gene	19063600	19079288	.	+	.	ID=hg002_chrY_paternal_382;gene_name=PRYP2;gene_biotype=pseudogene;origin_ID=PRYP2;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.274_0
HG002_chrY	Liftoff	gene	19080181	19081756	.	-	.	ID=hg002_chrY_paternal_383;gene_name=ELOCP26;gene_biotype=pseudogene;origin_ID=ELOCP26;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.273_0
HG002_chrY	Liftoff	gene	19085054	19087052	.	-	.	ID=hg002_chrY_paternal_384;gene_name=CDY5P;gene_biotype=pseudogene;origin_ID=CDY5P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.272_0
HG002_chrY	Liftoff	gene	19108462	19115322	.	+	.	ID=hg002_chrY_paternal_385;gene_name=LOC124905302;gene_biotype=lncRNA;origin_ID=LOC124905302;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.271_0
HG002_chrY	Liftoff	transcript	19108462	19115322	.	+	.	ID=hg002_chrY_paternal_385.1;Parent=hg002_chrY_paternal_385;transcript_biotype=lnc_RNA;origin_ID=XR_007068455.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_385;gene_name=LOC124905302;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_385.1;transcript_name=hg002_chrY_paternal_385.1
HG002_chrY	Liftoff	exon	19108462	19110453	.	+	.	Parent=hg002_chrY_paternal_385.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19110541	19111289	.	+	.	Parent=hg002_chrY_paternal_385.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19111378	19115322	.	+	.	Parent=hg002_chrY_paternal_385.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	19118940	19119740	.	+	.	ID=hg002_chrY_paternal_386;gene_name=LOC105377218;gene_biotype=lncRNA;origin_ID=LOC105377218;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.270_0
HG002_chrY	Liftoff	transcript	19118940	19119740	.	+	.	ID=hg002_chrY_paternal_386.1;Parent=hg002_chrY_paternal_386;transcript_biotype=lnc_RNA;origin_ID=XR_938618.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_386;gene_name=LOC105377218;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_386.1;transcript_name=hg002_chrY_paternal_386.1
HG002_chrY	Liftoff	exon	19118940	19119022	.	+	.	Parent=hg002_chrY_paternal_386.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19119110	19119195	.	+	.	Parent=hg002_chrY_paternal_386.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19119284	19119740	.	+	.	Parent=hg002_chrY_paternal_386.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	19178451	19179830	.	-	.	ID=hg002_chrY_paternal_387;gene_name=TAF9P1;gene_biotype=pseudogene;origin_ID=TAF9P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.269_0
HG002_chrY	Liftoff	gene	19183819	19184380	.	+	.	ID=hg002_chrY_paternal_388;gene_name=CLUHP1;gene_biotype=pseudogene;origin_ID=CLUHP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.268_0
HG002_chrY	Liftoff	gene	19228799	19233090	.	+	.	ID=hg002_chrY_paternal_389;gene_name=FAM224B;gene_biotype=lncRNA;origin_ID=FAM224B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.307_0
HG002_chrY	Liftoff	transcript	19228799	19233090	.	+	.	ID=hg002_chrY_paternal_389.1;Parent=hg002_chrY_paternal_389;transcript_biotype=lnc_RNA;origin_ID=NR_002160.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_389;gene_name=FAM224B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_389.1;transcript_name=hg002_chrY_paternal_389.1
HG002_chrY	Liftoff	exon	19228799	19228935	.	+	.	Parent=hg002_chrY_paternal_389.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19231431	19231548	.	+	.	Parent=hg002_chrY_paternal_389.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19232884	19233090	.	+	.	Parent=hg002_chrY_paternal_389.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	19248367	19248482	.	-	.	ID=hg002_chrY_paternal_390;gene_name=RNA5SP521;gene_biotype=pseudogene;origin_ID=RNA5SP521;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.308_0
HG002_chrY	Liftoff	gene	19249418	19254110	.	+	.	ID=hg002_chrY_paternal_391;gene_name=LOC105377220;gene_biotype=lncRNA;origin_ID=LOC105377220;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.309_0
HG002_chrY	Liftoff	transcript	19249418	19254110	.	+	.	ID=hg002_chrY_paternal_391.1;Parent=hg002_chrY_paternal_391;transcript_biotype=lnc_RNA;origin_ID=XR_001756063.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_391;gene_name=LOC105377220;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_391.1;transcript_name=hg002_chrY_paternal_391.1
HG002_chrY	Liftoff	exon	19249418	19250192	.	+	.	Parent=hg002_chrY_paternal_391.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19251405	19251533	.	+	.	Parent=hg002_chrY_paternal_391.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19252244	19254110	.	+	.	Parent=hg002_chrY_paternal_391.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	19250280	19250392	.	-	.	ID=hg002_chrY_paternal_392;gene_name=RNA5SP520;gene_biotype=pseudogene;origin_ID=RNA5SP520;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.310_0
HG002_chrY	Liftoff	gene	19288825	19291660	.	+	.	ID=hg002_chrY_paternal_393;gene_name=TUBB1P2;gene_biotype=pseudogene;origin_ID=TUBB1P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.311_0
HG002_chrY	Liftoff	gene	19291514	19307296	.	-	.	ID=hg002_chrY_paternal_394;gene_name=FAM41AY1;gene_biotype=lncRNA;origin_ID=FAM41AY1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.312_0
HG002_chrY	Liftoff	transcript	19291514	19307296	.	-	.	ID=hg002_chrY_paternal_394.1;Parent=hg002_chrY_paternal_394;transcript_biotype=lnc_RNA;origin_ID=NR_028083.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_394;gene_name=FAM41AY1;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_394.1;transcript_name=hg002_chrY_paternal_394.1
HG002_chrY	Liftoff	exon	19291514	19292240	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	19292323	19292544	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	19292757	19292944	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	19293238	19293447	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	19293722	19293815	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	19293925	19294095	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19294689	19294782	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19295030	19295158	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19306494	19306543	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19307139	19307296	.	-	.	Parent=hg002_chrY_paternal_394.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19343040	19343368	.	+	.	ID=hg002_chrY_paternal_395;gene_name=ELOCP13;gene_biotype=pseudogene;origin_ID=ELOCP13;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.313_0
HG002_chrY	Liftoff	gene	19355295	19371504	.	-	.	ID=hg002_chrY_paternal_396;gene_name=OFD1P4Y;gene_biotype=pseudogene;origin_ID=OFD1P4Y;coverage=1.0;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.341_0
HG002_chrY	Liftoff	gene	19383334	19389656	.	+	.	ID=hg002_chrY_paternal_397;gene_name=USP9YP14;gene_biotype=pseudogene;origin_ID=USP9YP14;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.315_0
HG002_chrY	Liftoff	gene	19386287	19420114	.	+	.	ID=hg002_chrY_paternal_398;gene_name=LOC124905304;gene_biotype=lncRNA;origin_ID=LOC124905304;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.316_0
HG002_chrY	Liftoff	transcript	19386287	19420114	.	+	.	ID=hg002_chrY_paternal_398.1;Parent=hg002_chrY_paternal_398;transcript_biotype=lnc_RNA;origin_ID=XR_007068457.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_398;gene_name=LOC124905304;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_398.1;transcript_name=hg002_chrY_paternal_398.1
HG002_chrY	Liftoff	exon	19386287	19386327	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19388729	19388891	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19389555	19389656	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19392019	19392222	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19393939	19394073	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19402868	19403100	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	19403194	19403299	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	19408911	19409038	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	19417807	19420114	.	+	.	Parent=hg002_chrY_paternal_398.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	19388757	19388918	.	+	.	ID=hg002_chrY_paternal_399;gene_name=RNU1-48P;gene_biotype=pseudogene;origin_ID=RNU1-48P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.317_0
HG002_chrY	Liftoff	gene	19393170	19396547	.	-	.	ID=hg002_chrY_paternal_400;gene_name=USP9YP5;gene_biotype=pseudogene;origin_ID=USP9YP5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.318_0
HG002_chrY	Liftoff	gene	19410060	19411856	.	+	.	ID=hg002_chrY_paternal_401;gene_name=XKRYP1;gene_biotype=pseudogene;origin_ID=XKRYP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.319_0
HG002_chrY	Liftoff	gene	19431505	19431970	.	+	.	ID=hg002_chrY_paternal_402;gene_name=PRYP5;gene_biotype=pseudogene;origin_ID=PRYP5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.320_0
HG002_chrY	Liftoff	gene	19431890	19491179	.	+	.	ID=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;origin_ID=HSFY1;coverage=1.0;sequence_ID=1.0;valid_ORFs=4;extra_copy_number=0;copy_num_ID=REF.chrY.321_0
HG002_chrY	Liftoff	transcript	19431890	19450840	.	+	.	ID=hg002_chrY_paternal_403.1;Parent=hg002_chrY_paternal_403;transcript_biotype=protein_coding;origin_ID=XM_017030085.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.1;transcript_name=hg002_chrY_paternal_403.1
HG002_chrY	Liftoff	exon	19431890	19432084	.	+	.	Parent=hg002_chrY_paternal_403.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19449281	19449548	.	+	.	Parent=hg002_chrY_paternal_403.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19450027	19450840	.	+	.	Parent=hg002_chrY_paternal_403.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19432059	19432084	.	+	0	Parent=hg002_chrY_paternal_403.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19449281	19449548	.	+	1	Parent=hg002_chrY_paternal_403.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19450027	19450719	.	+	0	Parent=hg002_chrY_paternal_403.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	19434328	19434989	.	-	.	ID=hg002_chrY_paternal_404;gene_name=ELOCP14;gene_biotype=pseudogene;origin_ID=ELOCP14;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.322_0
HG002_chrY	Liftoff	gene	19443141	19446479	.	+	.	ID=hg002_chrY_paternal_405;gene_name=USP9YP1;gene_biotype=pseudogene;origin_ID=USP9YP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.323_0
HG002_chrY	Liftoff	transcript	19448929	19450840	.	+	.	ID=hg002_chrY_paternal_403.2;Parent=hg002_chrY_paternal_403;transcript_biotype=protein_coding;origin_ID=XM_005262565.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.2;transcript_name=hg002_chrY_paternal_403.2
HG002_chrY	Liftoff	exon	19448929	19449182	.	+	.	Parent=hg002_chrY_paternal_403.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19449281	19449548	.	+	.	Parent=hg002_chrY_paternal_403.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19450027	19450840	.	+	.	Parent=hg002_chrY_paternal_403.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19449172	19449182	.	+	0	Parent=hg002_chrY_paternal_403.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19449281	19449548	.	+	1	Parent=hg002_chrY_paternal_403.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19450027	19450719	.	+	0	Parent=hg002_chrY_paternal_403.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19448939	19454322	.	+	.	ID=hg002_chrY_paternal_403.3;Parent=hg002_chrY_paternal_403;transcript_biotype=transcript;origin_ID=XR_007068453.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.3;transcript_name=hg002_chrY_paternal_403.3
HG002_chrY	Liftoff	exon	19448939	19449548	.	+	.	Parent=hg002_chrY_paternal_403.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19452362	19452471	.	+	.	Parent=hg002_chrY_paternal_403.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19453033	19453119	.	+	.	Parent=hg002_chrY_paternal_403.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19454167	19454322	.	+	.	Parent=hg002_chrY_paternal_403.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19448939	19491179	.	+	.	ID=hg002_chrY_paternal_403.4;Parent=hg002_chrY_paternal_403;transcript_biotype=protein_coding;origin_ID=NM_152584.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.4;transcript_name=hg002_chrY_paternal_403.4
HG002_chrY	Liftoff	exon	19448939	19449548	.	+	.	Parent=hg002_chrY_paternal_403.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19490752	19491179	.	+	.	Parent=hg002_chrY_paternal_403.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19449036	19449548	.	+	0	Parent=hg002_chrY_paternal_403.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19490752	19490850	.	+	0	Parent=hg002_chrY_paternal_403.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19448939	19491179	.	+	.	ID=hg002_chrY_paternal_403.5;Parent=hg002_chrY_paternal_403;transcript_biotype=transcript;origin_ID=NR_003510.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.5;transcript_name=hg002_chrY_paternal_403.5
HG002_chrY	Liftoff	exon	19448939	19449548	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19452362	19452471	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19453033	19453119	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19454167	19454321	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19484889	19484974	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19490752	19491179	.	+	.	Parent=hg002_chrY_paternal_403.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19448968	19450840	.	+	.	ID=hg002_chrY_paternal_403.6;Parent=hg002_chrY_paternal_403;transcript_biotype=protein_coding;origin_ID=NM_033108.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_403;gene_name=HSFY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_403.6;transcript_name=hg002_chrY_paternal_403.6
HG002_chrY	Liftoff	exon	19448968	19449548	.	+	.	Parent=hg002_chrY_paternal_403.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19450027	19450840	.	+	.	Parent=hg002_chrY_paternal_403.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19449036	19449548	.	+	0	Parent=hg002_chrY_paternal_403.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19450027	19450719	.	+	0	Parent=hg002_chrY_paternal_403.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	19480441	19480976	.	+	.	ID=hg002_chrY_paternal_406;gene_name=GPM6BP1;gene_biotype=pseudogene;origin_ID=GPM6BP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.324_0
HG002_chrY	Liftoff	gene	19483422	19492737	.	-	.	ID=hg002_chrY_paternal_407;gene_name=TTTY9B;gene_biotype=lncRNA;origin_ID=TTTY9B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.325_0
HG002_chrY	Liftoff	transcript	19483422	19492737	.	-	.	ID=hg002_chrY_paternal_407.1;Parent=hg002_chrY_paternal_407;transcript_biotype=lnc_RNA;origin_ID=NR_002159.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_407;gene_name=TTTY9B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_407.1;transcript_name=hg002_chrY_paternal_407.1
HG002_chrY	Liftoff	exon	19483422	19484564	.	-	.	Parent=hg002_chrY_paternal_407.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19489628	19489764	.	-	.	Parent=hg002_chrY_paternal_407.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19490347	19490460	.	-	.	Parent=hg002_chrY_paternal_407.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19490822	19490922	.	-	.	Parent=hg002_chrY_paternal_407.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19492596	19492737	.	-	.	Parent=hg002_chrY_paternal_407.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19484179	19531395	.	-	.	ID=hg002_chrY_paternal_408;gene_name=OFD1P5Y;gene_biotype=pseudogene;origin_ID=OFD1P5Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.326_0
HG002_chrY	Liftoff	gene	19551884	19553006	.	+	.	ID=hg002_chrY_paternal_409;gene_name=RAB9AP4;gene_biotype=pseudogene;origin_ID=RAB9AP4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.327_0
HG002_chrY	Liftoff	gene	19556292	19558412	.	-	.	ID=hg002_chrY_paternal_410;gene_name=TRAPPC2P7;gene_biotype=pseudogene;origin_ID=TRAPPC2P7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.328_0
HG002_chrY	Liftoff	gene	19575957	19640676	.	+	.	ID=hg002_chrY_paternal_411;gene_name=OFD1P6Y;gene_biotype=pseudogene;origin_ID=OFD1P6Y;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.329_0
HG002_chrY	Liftoff	gene	19632118	19641433	.	+	.	ID=hg002_chrY_paternal_412;gene_name=TTTY9A;gene_biotype=lncRNA;origin_ID=TTTY9A;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.330_0
HG002_chrY	Liftoff	transcript	19632118	19641433	.	+	.	ID=hg002_chrY_paternal_412.1;Parent=hg002_chrY_paternal_412;transcript_biotype=lnc_RNA;origin_ID=NR_001530.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_412;gene_name=TTTY9A;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_412.1;transcript_name=hg002_chrY_paternal_412.1
HG002_chrY	Liftoff	exon	19632118	19632259	.	+	.	Parent=hg002_chrY_paternal_412.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19633933	19634033	.	+	.	Parent=hg002_chrY_paternal_412.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19634395	19634508	.	+	.	Parent=hg002_chrY_paternal_412.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19635091	19635227	.	+	.	Parent=hg002_chrY_paternal_412.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19640291	19641433	.	+	.	Parent=hg002_chrY_paternal_412.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	19633676	19692990	.	-	.	ID=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;origin_ID=HSFY2;coverage=1.0;sequence_ID=1.0;valid_ORFs=5;extra_copy_number=0;copy_num_ID=REF.chrY.331_0
HG002_chrY	Liftoff	transcript	19633676	19675960	.	-	.	ID=hg002_chrY_paternal_413.1;Parent=hg002_chrY_paternal_413;transcript_biotype=protein_coding;origin_ID=NM_001001877.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.1;transcript_name=hg002_chrY_paternal_413.1
HG002_chrY	Liftoff	exon	19633676	19634103	.	-	.	Parent=hg002_chrY_paternal_413.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675960	.	-	.	Parent=hg002_chrY_paternal_413.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19634005	19634103	.	-	0	Parent=hg002_chrY_paternal_413.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675331	19675843	.	-	0	Parent=hg002_chrY_paternal_413.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19633676	19675960	.	-	.	ID=hg002_chrY_paternal_413.2;Parent=hg002_chrY_paternal_413;transcript_biotype=transcript;origin_ID=NR_003509.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.2;transcript_name=hg002_chrY_paternal_413.2
HG002_chrY	Liftoff	exon	19633676	19634103	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	19639881	19639966	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19670558	19670712	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19671760	19671846	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19672408	19672517	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675960	.	-	.	Parent=hg002_chrY_paternal_413.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19643879	19644414	.	-	.	ID=hg002_chrY_paternal_414;gene_name=GPM6BP2;gene_biotype=pseudogene;origin_ID=GPM6BP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.332_0
HG002_chrY	Liftoff	transcript	19671735	19675960	.	-	.	ID=hg002_chrY_paternal_413.3;Parent=hg002_chrY_paternal_413;transcript_biotype=protein_coding;origin_ID=XM_017030031.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.3;transcript_name=hg002_chrY_paternal_413.3
HG002_chrY	Liftoff	exon	19671735	19671846	.	-	.	Parent=hg002_chrY_paternal_413.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19672408	19672517	.	-	.	Parent=hg002_chrY_paternal_413.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675960	.	-	.	Parent=hg002_chrY_paternal_413.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19671825	19671846	.	-	1	Parent=hg002_chrY_paternal_413.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19672408	19672517	.	-	0	Parent=hg002_chrY_paternal_413.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675331	19675843	.	-	0	Parent=hg002_chrY_paternal_413.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19674039	19675951	.	-	.	ID=hg002_chrY_paternal_413.4;Parent=hg002_chrY_paternal_413;transcript_biotype=protein_coding;origin_ID=XM_005262508.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.4;transcript_name=hg002_chrY_paternal_413.4
HG002_chrY	Liftoff	exon	19674039	19674852	.	-	.	Parent=hg002_chrY_paternal_413.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675598	.	-	.	Parent=hg002_chrY_paternal_413.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675697	19675951	.	-	.	Parent=hg002_chrY_paternal_413.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19674160	19674852	.	-	0	Parent=hg002_chrY_paternal_413.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675331	19675598	.	-	1	Parent=hg002_chrY_paternal_413.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675697	19675707	.	-	0	Parent=hg002_chrY_paternal_413.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19674039	19675960	.	-	.	ID=hg002_chrY_paternal_413.5;Parent=hg002_chrY_paternal_413;transcript_biotype=protein_coding;origin_ID=NM_153716.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.5;transcript_name=hg002_chrY_paternal_413.5
HG002_chrY	Liftoff	exon	19674039	19674852	.	-	.	Parent=hg002_chrY_paternal_413.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675960	.	-	.	Parent=hg002_chrY_paternal_413.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19674160	19674852	.	-	0	Parent=hg002_chrY_paternal_413.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675331	19675843	.	-	0	Parent=hg002_chrY_paternal_413.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19674039	19692990	.	-	.	ID=hg002_chrY_paternal_413.6;Parent=hg002_chrY_paternal_413;transcript_biotype=protein_coding;origin_ID=XM_017030030.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_413;gene_name=HSFY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_413.6;transcript_name=hg002_chrY_paternal_413.6
HG002_chrY	Liftoff	exon	19674039	19674852	.	-	.	Parent=hg002_chrY_paternal_413.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19675331	19675598	.	-	.	Parent=hg002_chrY_paternal_413.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19692796	19692990	.	-	.	Parent=hg002_chrY_paternal_413.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19674160	19674852	.	-	0	Parent=hg002_chrY_paternal_413.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19675331	19675598	.	-	1	Parent=hg002_chrY_paternal_413.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	19692796	19692821	.	-	0	Parent=hg002_chrY_paternal_413.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19678400	19681738	.	-	.	ID=hg002_chrY_paternal_415;gene_name=USP9YP2;gene_biotype=pseudogene;origin_ID=USP9YP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.333_0
HG002_chrY	Liftoff	gene	19689976	19690306	.	+	.	ID=hg002_chrY_paternal_416;gene_name=ELOCP7;gene_biotype=pseudogene;origin_ID=ELOCP7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.334_0
HG002_chrY	Liftoff	gene	19692835	19693377	.	-	.	ID=hg002_chrY_paternal_417;gene_name=PRYP6;gene_biotype=pseudogene;origin_ID=PRYP6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.335_0
HG002_chrY	Liftoff	gene	19704767	19738630	.	-	.	ID=hg002_chrY_paternal_418;gene_name=LOC124905305;gene_biotype=lncRNA;origin_ID=LOC124905305;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.336_0
HG002_chrY	Liftoff	transcript	19704767	19738628	.	-	.	ID=hg002_chrY_paternal_418.1;Parent=hg002_chrY_paternal_418;transcript_biotype=lnc_RNA;origin_ID=XR_007068458.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_418;gene_name=LOC124905305;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_418.1;transcript_name=hg002_chrY_paternal_418.1
HG002_chrY	Liftoff	exon	19704767	19707074	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	19715840	19715967	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	19721579	19722010	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	19730816	19730950	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19732667	19732870	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19735233	19735334	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19735988	19736150	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19738552	19738628	.	-	.	Parent=hg002_chrY_paternal_418.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19704767	19738630	.	-	.	ID=hg002_chrY_paternal_418.2;Parent=hg002_chrY_paternal_418;transcript_biotype=lnc_RNA;origin_ID=XR_007068459.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_418;gene_name=LOC124905305;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_418.2;transcript_name=hg002_chrY_paternal_418.2
HG002_chrY	Liftoff	exon	19704767	19707074	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	19721579	19722010	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	19730816	19730950	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19732667	19732870	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19735233	19735334	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19735988	19736150	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19738552	19738630	.	-	.	Parent=hg002_chrY_paternal_418.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19713025	19714821	.	-	.	ID=hg002_chrY_paternal_419;gene_name=XKRYP2;gene_biotype=pseudogene;origin_ID=XKRYP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.337_0
HG002_chrY	Liftoff	gene	19728335	19731719	.	+	.	ID=hg002_chrY_paternal_420;gene_name=USP9YP10;gene_biotype=pseudogene;origin_ID=USP9YP10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.338_0
HG002_chrY	Liftoff	gene	19735233	19741543	.	-	.	ID=hg002_chrY_paternal_421;gene_name=USP9YP28;gene_biotype=pseudogene;origin_ID=USP9YP28;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.339_0
HG002_chrY	Liftoff	gene	19735961	19736122	.	-	.	ID=hg002_chrY_paternal_422;gene_name=LOC124905307;gene_biotype=snRNA;origin_ID=LOC124905307;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.340_0
HG002_chrY	Liftoff	transcript	19735961	19736122	.	-	.	ID=hg002_chrY_paternal_422.1;Parent=hg002_chrY_paternal_422;transcript_biotype=snRNA;origin_ID=XR_007068483.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_422;gene_name=LOC124905307;gene_biotype=snRNA;transcript_id=hg002_chrY_paternal_422.1;transcript_name=hg002_chrY_paternal_422.1
HG002_chrY	Liftoff	exon	19735961	19736122	.	-	.	Parent=hg002_chrY_paternal_422.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19750399	19769612	.	+	.	ID=hg002_chrY_paternal_423;gene_name=OFD1P7Y;gene_biotype=pseudogene;origin_ID=OFD1P7Y;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.314_0
HG002_chrY	Liftoff	gene	19774333	19774503	.	+	.	ID=hg002_chrY_paternal_424;gene_name=MTCYBP2;gene_biotype=pseudogene;origin_ID=MTCYBP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.342_0
HG002_chrY	Liftoff	gene	19774732	19979793	.	-	.	ID=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;origin_ID=TTTY14;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.343_0
HG002_chrY	Liftoff	transcript	19774732	19978249	.	-	.	ID=hg002_chrY_paternal_425.1;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_125736.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.1;transcript_name=hg002_chrY_paternal_425.1
HG002_chrY	Liftoff	exon	19774732	19775065	.	-	.	Parent=hg002_chrY_paternal_425.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19779299	19779436	.	-	.	Parent=hg002_chrY_paternal_425.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19814613	19814727	.	-	.	Parent=hg002_chrY_paternal_425.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19970970	19971044	.	-	.	Parent=hg002_chrY_paternal_425.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19978187	19978249	.	-	.	Parent=hg002_chrY_paternal_425.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19774732	19978275	.	-	.	ID=hg002_chrY_paternal_425.2;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_158640.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.2;transcript_name=hg002_chrY_paternal_425.2
HG002_chrY	Liftoff	exon	19774732	19775065	.	-	.	Parent=hg002_chrY_paternal_425.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19779299	19779436	.	-	.	Parent=hg002_chrY_paternal_425.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19975745	19975807	.	-	.	Parent=hg002_chrY_paternal_425.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19978187	19978275	.	-	.	Parent=hg002_chrY_paternal_425.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19774732	19979793	.	-	.	ID=hg002_chrY_paternal_425.3;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_125733.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.3;transcript_name=hg002_chrY_paternal_425.3
HG002_chrY	Liftoff	exon	19774732	19775065	.	-	.	Parent=hg002_chrY_paternal_425.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19834991	19835089	.	-	.	Parent=hg002_chrY_paternal_425.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19835605	19835723	.	-	.	Parent=hg002_chrY_paternal_425.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19970970	19971044	.	-	.	Parent=hg002_chrY_paternal_425.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19979291	19979793	.	-	.	Parent=hg002_chrY_paternal_425.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19774732	19979793	.	-	.	ID=hg002_chrY_paternal_425.4;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_125734.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.4;transcript_name=hg002_chrY_paternal_425.4
HG002_chrY	Liftoff	exon	19774732	19775065	.	-	.	Parent=hg002_chrY_paternal_425.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19779299	19779436	.	-	.	Parent=hg002_chrY_paternal_425.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19970970	19971044	.	-	.	Parent=hg002_chrY_paternal_425.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19979291	19979793	.	-	.	Parent=hg002_chrY_paternal_425.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19774732	19979793	.	-	.	ID=hg002_chrY_paternal_425.5;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_125735.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.5;transcript_name=hg002_chrY_paternal_425.5
HG002_chrY	Liftoff	exon	19774732	19775065	.	-	.	Parent=hg002_chrY_paternal_425.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19779299	19779436	.	-	.	Parent=hg002_chrY_paternal_425.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19979291	19979793	.	-	.	Parent=hg002_chrY_paternal_425.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19834255	19978275	.	-	.	ID=hg002_chrY_paternal_425.6;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_158641.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.6;transcript_name=hg002_chrY_paternal_425.6
HG002_chrY	Liftoff	exon	19834255	19835089	.	-	.	Parent=hg002_chrY_paternal_425.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	19946791	19946944	.	-	.	Parent=hg002_chrY_paternal_425.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	19947491	19947540	.	-	.	Parent=hg002_chrY_paternal_425.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19970970	19971044	.	-	.	Parent=hg002_chrY_paternal_425.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19978187	19978275	.	-	.	Parent=hg002_chrY_paternal_425.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19834699	19978249	.	-	.	ID=hg002_chrY_paternal_425.7;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_125737.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.7;transcript_name=hg002_chrY_paternal_425.7
HG002_chrY	Liftoff	exon	19834699	19835089	.	-	.	Parent=hg002_chrY_paternal_425.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	19970970	19971044	.	-	.	Parent=hg002_chrY_paternal_425.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19978187	19978249	.	-	.	Parent=hg002_chrY_paternal_425.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	19834699	19979793	.	-	.	ID=hg002_chrY_paternal_425.8;Parent=hg002_chrY_paternal_425;transcript_biotype=lnc_RNA;origin_ID=NR_001543.4;extra_copy_number=0;gene_id=hg002_chrY_paternal_425;gene_name=TTTY14;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_425.8;transcript_name=hg002_chrY_paternal_425.8
HG002_chrY	Liftoff	exon	19834699	19835089	.	-	.	Parent=hg002_chrY_paternal_425.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	19979291	19979793	.	-	.	Parent=hg002_chrY_paternal_425.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	19887361	19888610	.	+	.	ID=hg002_chrY_paternal_426;gene_name=ZNF839P1;gene_biotype=pseudogene;origin_ID=ZNF839P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.344_0
HG002_chrY	Liftoff	gene	19892888	19895066	.	-	.	ID=hg002_chrY_paternal_427;gene_name=CD24P4;gene_biotype=pseudogene;origin_ID=CD24P4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.345_0
HG002_chrY	Liftoff	gene	19921231	19921335	.	-	.	ID=hg002_chrY_paternal_428;gene_name=RNU6-255P;gene_biotype=pseudogene;origin_ID=RNU6-255P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.346_0
HG002_chrY	Liftoff	gene	19982102	19991124	.	+	.	ID=hg002_chrY_paternal_429;gene_name=LOC124905306;gene_biotype=lncRNA;origin_ID=LOC124905306;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.347_0
HG002_chrY	Liftoff	transcript	19982102	19991124	.	+	.	ID=hg002_chrY_paternal_429.1;Parent=hg002_chrY_paternal_429;transcript_biotype=lnc_RNA;origin_ID=XR_007068460.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_429;gene_name=LOC124905306;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_429.1;transcript_name=hg002_chrY_paternal_429.1
HG002_chrY	Liftoff	exon	19982102	19982971	.	+	.	Parent=hg002_chrY_paternal_429.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	19988746	19991124	.	+	.	Parent=hg002_chrY_paternal_429.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	20229782	20231048	.	+	.	ID=hg002_chrY_paternal_430;gene_name=GAPDHP19;gene_biotype=pseudogene;origin_ID=GAPDHP19;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.348_0
HG002_chrY	Liftoff	gene	20357754	20405458	.	-	.	ID=hg002_chrY_paternal_431;gene_name=BCORP1;gene_biotype=transcribed_pseudogene;origin_ID=BCORP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.349_0
HG002_chrY	Liftoff	transcript	20357754	20405458	.	-	.	ID=hg002_chrY_paternal_431.1;Parent=hg002_chrY_paternal_431;transcript_biotype=transcript;origin_ID=NR_002923.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_431;gene_name=BCORP1;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_431.1;transcript_name=hg002_chrY_paternal_431.1
HG002_chrY	Liftoff	exon	20357754	20359187	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20361232	20361387	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20361597	20361674	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20367411	20367532	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20368761	20369679	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20376210	20376449	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20376945	20377208	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20382474	20382599	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20405337	20405458	.	-	.	Parent=hg002_chrY_paternal_431.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20357754	20405458	.	-	.	ID=hg002_chrY_paternal_431.2;Parent=hg002_chrY_paternal_431;transcript_biotype=transcript;origin_ID=NR_033732.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_431;gene_name=BCORP1;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_431.2;transcript_name=hg002_chrY_paternal_431.2
HG002_chrY	Liftoff	exon	20357754	20359187	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20359380	20359440	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20361232	20361387	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20361597	20361674	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20362267	20362412	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20367411	20367532	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20368761	20369679	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20376210	20376449	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20376945	20377208	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20382474	20382599	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20405337	20405458	.	-	.	Parent=hg002_chrY_paternal_431.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	20383921	20385760	.	-	.	ID=hg002_chrY_paternal_432;gene_name=LOC102723934;gene_biotype=protein_coding;origin_ID=LOC102723934;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.350_0
HG002_chrY	Liftoff	transcript	20383921	20385760	.	-	.	ID=hg002_chrY_paternal_432.1;Parent=hg002_chrY_paternal_432;transcript_biotype=protein_coding;origin_ID=XM_047442786.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_432;gene_name=LOC102723934;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_432.1;transcript_name=hg002_chrY_paternal_432.1
HG002_chrY	Liftoff	exon	20383921	20384309	.	-	.	Parent=hg002_chrY_paternal_432.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20384622	20384633	.	-	.	Parent=hg002_chrY_paternal_432.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20384714	20385760	.	-	.	Parent=hg002_chrY_paternal_432.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20383921	20384309	.	-	2	Parent=hg002_chrY_paternal_432.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20384622	20384633	.	-	2	Parent=hg002_chrY_paternal_432.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20384714	20385737	.	-	0	Parent=hg002_chrY_paternal_432.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;origin_ID=LOC105377223;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.351_0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.1;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_001756064.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.1;transcript_name=hg002_chrY_paternal_433.1
HG002_chrY	Liftoff	exon	20456199	20459112	.	-	.	Parent=hg002_chrY_paternal_433.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20459530	20459589	.	-	.	Parent=hg002_chrY_paternal_433.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460324	20460440	.	-	.	Parent=hg002_chrY_paternal_433.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20469282	20469309	.	-	.	Parent=hg002_chrY_paternal_433.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.2;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_001756065.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.2;transcript_name=hg002_chrY_paternal_433.2
HG002_chrY	Liftoff	exon	20456199	20459112	.	-	.	Parent=hg002_chrY_paternal_433.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20459530	20459589	.	-	.	Parent=hg002_chrY_paternal_433.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460340	20460440	.	-	.	Parent=hg002_chrY_paternal_433.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20469282	20469309	.	-	.	Parent=hg002_chrY_paternal_433.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.3;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_007068461.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.3;transcript_name=hg002_chrY_paternal_433.3
HG002_chrY	Liftoff	exon	20456199	20459112	.	-	.	Parent=hg002_chrY_paternal_433.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20459530	20459589	.	-	.	Parent=hg002_chrY_paternal_433.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460324	20460440	.	-	.	Parent=hg002_chrY_paternal_433.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20461640	20469309	.	-	.	Parent=hg002_chrY_paternal_433.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.4;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_007068462.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.4;transcript_name=hg002_chrY_paternal_433.4
HG002_chrY	Liftoff	exon	20456199	20457854	.	-	.	Parent=hg002_chrY_paternal_433.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20459530	20459589	.	-	.	Parent=hg002_chrY_paternal_433.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460340	20460440	.	-	.	Parent=hg002_chrY_paternal_433.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20461640	20469309	.	-	.	Parent=hg002_chrY_paternal_433.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.5;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_007068463.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.5;transcript_name=hg002_chrY_paternal_433.5
HG002_chrY	Liftoff	exon	20456199	20457854	.	-	.	Parent=hg002_chrY_paternal_433.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20459530	20459589	.	-	.	Parent=hg002_chrY_paternal_433.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460324	20460440	.	-	.	Parent=hg002_chrY_paternal_433.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20469282	20469309	.	-	.	Parent=hg002_chrY_paternal_433.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.6;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_938626.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.6;transcript_name=hg002_chrY_paternal_433.6
HG002_chrY	Liftoff	exon	20456199	20459589	.	-	.	Parent=hg002_chrY_paternal_433.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460324	20460440	.	-	.	Parent=hg002_chrY_paternal_433.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20461640	20469309	.	-	.	Parent=hg002_chrY_paternal_433.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20456199	20469309	.	-	.	ID=hg002_chrY_paternal_433.7;Parent=hg002_chrY_paternal_433;transcript_biotype=lnc_RNA;origin_ID=XR_938628.4;extra_copy_number=0;gene_id=hg002_chrY_paternal_433;gene_name=LOC105377223;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_433.7;transcript_name=hg002_chrY_paternal_433.7
HG002_chrY	Liftoff	exon	20456199	20459589	.	-	.	Parent=hg002_chrY_paternal_433.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20460324	20460440	.	-	.	Parent=hg002_chrY_paternal_433.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20469282	20469309	.	-	.	Parent=hg002_chrY_paternal_433.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	20469658	20509472	.	+	.	ID=hg002_chrY_paternal_434;gene_name=TXLNGY;gene_biotype=transcribed_pseudogene;origin_ID=TXLNGY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.352_0
HG002_chrY	Liftoff	transcript	20469658	20492723	.	+	.	ID=hg002_chrY_paternal_434.1;Parent=hg002_chrY_paternal_434;transcript_biotype=transcript;origin_ID=NR_045129.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_434;gene_name=TXLNGY;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_434.1;transcript_name=hg002_chrY_paternal_434.1
HG002_chrY	Liftoff	exon	20469658	20469782	.	+	.	Parent=hg002_chrY_paternal_434.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	20489510	20489807	.	+	.	Parent=hg002_chrY_paternal_434.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20491821	20491912	.	+	.	Parent=hg002_chrY_paternal_434.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20492383	20492723	.	+	.	Parent=hg002_chrY_paternal_434.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20469658	20509472	.	+	.	ID=hg002_chrY_paternal_434.2;Parent=hg002_chrY_paternal_434;transcript_biotype=transcript;origin_ID=NR_045128.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_434;gene_name=TXLNGY;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_434.2;transcript_name=hg002_chrY_paternal_434.2
HG002_chrY	Liftoff	exon	20469658	20469782	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	20489510	20489807	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20491821	20491912	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20494080	20494259	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20495699	20495893	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20498315	20498434	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20499895	20499969	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20502043	20502135	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20504520	20504615	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20506101	20509472	.	+	.	Parent=hg002_chrY_paternal_434.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	gene	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;origin_ID=KDM5D;coverage=1.0;sequence_ID=1.0;valid_ORFs=14;extra_copy_number=0;copy_num_ID=REF.chrY.353_0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.1;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=NM_001146705.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.1;transcript_name=hg002_chrY_paternal_435.1
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20625629	20625721	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20625629	20625721	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.2;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442765.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.2;transcript_name=hg002_chrY_paternal_435.2
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20611866	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.2;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.2;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20611866	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.2;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.3;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442766.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.3;transcript_name=hg002_chrY_paternal_435.3
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610610	20610711	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20611866	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.3;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610610	20610711	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20611866	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.4;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=NM_001146706.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.4;transcript_name=hg002_chrY_paternal_435.4
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.4;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.4;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.5;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=NM_004653.5;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.5;transcript_name=hg002_chrY_paternal_435.5
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.5;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.5;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.6;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_005262560.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.6;transcript_name=hg002_chrY_paternal_435.6
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.6;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.7;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_005262561.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.7;transcript_name=hg002_chrY_paternal_435.7
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20611866	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.7;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20611866	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.8;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_011531468.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.8;transcript_name=hg002_chrY_paternal_435.8
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610610	20610711	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.8;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610610	20610711	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.8;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.8;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.8;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.8;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.8;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.9;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442763.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.9;transcript_name=hg002_chrY_paternal_435.9
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610610	20610711	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.9;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610610	20610711	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.9;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.9;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.9;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.9;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.9;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20606153	20647014	.	-	.	ID=hg002_chrY_paternal_435.10;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442764.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.10;transcript_name=hg002_chrY_paternal_435.10
HG002_chrY	Liftoff	exon	20606153	20608633	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	20608729	20608928	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610610	20610711	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20611866	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608283	20608633	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608729	20608928	.	-	2	Parent=hg002_chrY_paternal_435.10;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610610	20610711	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.10;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20611866	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.10;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.10;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.10;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.10;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.10;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20608766	20647014	.	-	.	ID=hg002_chrY_paternal_435.11;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442767.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.11;transcript_name=hg002_chrY_paternal_435.11
HG002_chrY	Liftoff	exon	20608766	20608896	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609082	20609151	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	20609435	20610034	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610222	20610359	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	20610532	20610711	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611163	20611301	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	20611739	20612097	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20608868	20608896	.	-	2	Parent=hg002_chrY_paternal_435.11;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609082	20609151	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20609435	20610034	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610222	20610359	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20610532	20610711	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611163	20611301	.	-	1	Parent=hg002_chrY_paternal_435.11;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20611739	20612097	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.11;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.11;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.11;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.11;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20611748	20647014	.	-	.	ID=hg002_chrY_paternal_435.12;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442768.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.12;transcript_name=hg002_chrY_paternal_435.12
HG002_chrY	Liftoff	exon	20611748	20612548	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	20612664	20612760	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617640	20617787	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617903	20618027	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612465	20612548	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20612664	20612760	.	-	1	Parent=hg002_chrY_paternal_435.12;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617640	20617787	.	-	2	Parent=hg002_chrY_paternal_435.12;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617903	20618027	.	-	1	Parent=hg002_chrY_paternal_435.12;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.12;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20612688	20647014	.	-	.	ID=hg002_chrY_paternal_435.13;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442769.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.13;transcript_name=hg002_chrY_paternal_435.13
HG002_chrY	Liftoff	exon	20612688	20612760	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	20617872	20618027	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618111	20618292	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20617895	20618027	.	-	1	Parent=hg002_chrY_paternal_435.13;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618111	20618292	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.13;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.13;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20618159	20647014	.	-	.	ID=hg002_chrY_paternal_435.14;Parent=hg002_chrY_paternal_435;transcript_biotype=protein_coding;origin_ID=XM_047442770.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_435;gene_name=KDM5D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_435.14;transcript_name=hg002_chrY_paternal_435.14
HG002_chrY	Liftoff	exon	20618159	20618292	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618387	20618399	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618567	20618761	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	20618884	20619003	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623160	20623322	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	20623418	20623599	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634060	20634218	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634334	20634453	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	20634872	20635030	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637640	20637785	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	20637909	20638038	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	20641816	20641950	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	20643606	20643776	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	20644023	20644145	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	20645450	20645527	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646673	20646841	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20646959	20647014	.	-	.	Parent=hg002_chrY_paternal_435.14;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618276	20618292	.	-	2	Parent=hg002_chrY_paternal_435.14;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618387	20618399	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618567	20618761	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20618884	20619003	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623160	20623322	.	-	1	Parent=hg002_chrY_paternal_435.14;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20623418	20623599	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634060	20634218	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634334	20634453	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20634872	20635030	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637640	20637785	.	-	2	Parent=hg002_chrY_paternal_435.14;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20637909	20638038	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20641816	20641950	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20643606	20643776	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20644023	20644145	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20645450	20645527	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	20646673	20646822	.	-	0	Parent=hg002_chrY_paternal_435.14;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	20647044	20661359	.	+	.	ID=hg002_chrY_paternal_436;gene_name=LOC105377224;gene_biotype=lncRNA;origin_ID=LOC105377224;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.354_0
HG002_chrY	Liftoff	transcript	20647044	20659844	.	+	.	ID=hg002_chrY_paternal_436.1;Parent=hg002_chrY_paternal_436;transcript_biotype=lnc_RNA;origin_ID=XR_001756067.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_436;gene_name=LOC105377224;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_436.1;transcript_name=hg002_chrY_paternal_436.1
HG002_chrY	Liftoff	exon	20647044	20648001	.	+	.	Parent=hg002_chrY_paternal_436.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	20656914	20657103	.	+	.	Parent=hg002_chrY_paternal_436.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20657493	20659844	.	+	.	Parent=hg002_chrY_paternal_436.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20647073	20661359	.	+	.	ID=hg002_chrY_paternal_436.2;Parent=hg002_chrY_paternal_436;transcript_biotype=lnc_RNA;origin_ID=XR_938630.4;extra_copy_number=0;gene_id=hg002_chrY_paternal_436;gene_name=LOC105377224;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_436.2;transcript_name=hg002_chrY_paternal_436.2
HG002_chrY	Liftoff	exon	20647073	20648001	.	+	.	Parent=hg002_chrY_paternal_436.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	20657015	20657103	.	+	.	Parent=hg002_chrY_paternal_436.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20657493	20661359	.	+	.	Parent=hg002_chrY_paternal_436.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	20647126	20659737	.	+	.	ID=hg002_chrY_paternal_436.3;Parent=hg002_chrY_paternal_436;transcript_biotype=lnc_RNA;origin_ID=XR_007068464.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_436;gene_name=LOC105377224;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_436.3;transcript_name=hg002_chrY_paternal_436.3
HG002_chrY	Liftoff	exon	20647126	20648001	.	+	.	Parent=hg002_chrY_paternal_436.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	20657015	20657103	.	+	.	Parent=hg002_chrY_paternal_436.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	20657493	20657612	.	+	.	Parent=hg002_chrY_paternal_436.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	20658931	20659737	.	+	.	Parent=hg002_chrY_paternal_436.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	20888863	20890148	.	-	.	ID=hg002_chrY_paternal_437;gene_name=RCC2P2;gene_biotype=pseudogene;origin_ID=RCC2P2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.355_0
HG002_chrY	Liftoff	gene	20903463	20903986	.	-	.	ID=hg002_chrY_paternal_438;gene_name=ZNF886P;gene_biotype=pseudogene;origin_ID=ZNF886P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.356_0
HG002_chrY	Liftoff	gene	21228564	21229366	.	-	.	ID=hg002_chrY_paternal_439;gene_name=ZNF884P;gene_biotype=pseudogene;origin_ID=ZNF884P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.357_0
HG002_chrY	Liftoff	gene	21267118	21267746	.	+	.	ID=hg002_chrY_paternal_440;gene_name=ZNF885P;gene_biotype=pseudogene;origin_ID=ZNF885P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.358_0
HG002_chrY	Liftoff	gene	21336618	21390168	.	-	.	ID=hg002_chrY_paternal_441;gene_name=TTTY10;gene_biotype=lncRNA;origin_ID=TTTY10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.359_0
HG002_chrY	Liftoff	transcript	21336618	21390168	.	-	.	ID=hg002_chrY_paternal_441.1;Parent=hg002_chrY_paternal_441;transcript_biotype=lnc_RNA;origin_ID=NR_001542.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_441;gene_name=TTTY10;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_441.1;transcript_name=hg002_chrY_paternal_441.1
HG002_chrY	Liftoff	exon	21336618	21336772	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	21337378	21337617	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	21339139	21339198	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	21340822	21340931	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	21378292	21378396	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	21389211	21390168	.	-	.	Parent=hg002_chrY_paternal_441.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	21440631	21441505	.	-	.	ID=hg002_chrY_paternal_442;gene_name=KDM5DP1;gene_biotype=pseudogene;origin_ID=KDM5DP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.360_0
HG002_chrY	Liftoff	gene	21446717	21464096	.	+	.	ID=hg002_chrY_paternal_443;gene_name=EIF1AY;gene_biotype=protein_coding;origin_ID=EIF1AY;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.361_0
HG002_chrY	Liftoff	transcript	21446717	21464096	.	+	.	ID=hg002_chrY_paternal_443.1;Parent=hg002_chrY_paternal_443;transcript_biotype=protein_coding;origin_ID=NM_001278612.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_443;gene_name=EIF1AY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_443.1;transcript_name=hg002_chrY_paternal_443.1
HG002_chrY	Liftoff	exon	21446717	21446828	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	21450549	21450632	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	21453531	21453634	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	21458966	21459047	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	21460426	21460517	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	21463283	21464096	.	+	.	Parent=hg002_chrY_paternal_443.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21446813	21446828	.	+	0	Parent=hg002_chrY_paternal_443.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21450549	21450632	.	+	2	Parent=hg002_chrY_paternal_443.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21453531	21453634	.	+	2	Parent=hg002_chrY_paternal_443.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21458966	21459047	.	+	0	Parent=hg002_chrY_paternal_443.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21460426	21460517	.	+	2	Parent=hg002_chrY_paternal_443.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21463283	21463288	.	+	0	Parent=hg002_chrY_paternal_443.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	21446717	21464096	.	+	.	ID=hg002_chrY_paternal_443.2;Parent=hg002_chrY_paternal_443;transcript_biotype=protein_coding;origin_ID=NM_004681.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_443;gene_name=EIF1AY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_443.2;transcript_name=hg002_chrY_paternal_443.2
HG002_chrY	Liftoff	exon	21446717	21446828	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	21450549	21450632	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	21453531	21453634	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	21455416	21455466	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	21458966	21459047	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	21460426	21460517	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	21463283	21464096	.	+	.	Parent=hg002_chrY_paternal_443.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21446813	21446828	.	+	0	Parent=hg002_chrY_paternal_443.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21450549	21450632	.	+	2	Parent=hg002_chrY_paternal_443.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21453531	21453634	.	+	2	Parent=hg002_chrY_paternal_443.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21455416	21455466	.	+	0	Parent=hg002_chrY_paternal_443.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21458966	21459047	.	+	0	Parent=hg002_chrY_paternal_443.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21460426	21460517	.	+	2	Parent=hg002_chrY_paternal_443.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21463283	21463288	.	+	0	Parent=hg002_chrY_paternal_443.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	21481055	21483003	.	+	.	ID=hg002_chrY_paternal_444;gene_name=FAM8A9P;gene_biotype=pseudogene;origin_ID=FAM8A9P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.362_0
HG002_chrY	Liftoff	gene	21598213	21613855	.	+	.	ID=hg002_chrY_paternal_445;gene_name=TBL1YP1;gene_biotype=pseudogene;origin_ID=TBL1YP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.363_0
HG002_chrY	Liftoff	gene	21627063	21651988	.	+	.	ID=hg002_chrY_paternal_446;gene_name=RPS4Y2;gene_biotype=protein_coding;origin_ID=RPS4Y2;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.364_0
HG002_chrY	Liftoff	transcript	21627063	21651988	.	+	.	ID=hg002_chrY_paternal_446.1;Parent=hg002_chrY_paternal_446;transcript_biotype=protein_coding;origin_ID=NM_001039567.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_446;gene_name=RPS4Y2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_446.1;transcript_name=hg002_chrY_paternal_446.1
HG002_chrY	Liftoff	exon	21627063	21627121	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	21627733	21627810	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	21630824	21631004	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	21632240	21632337	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	21639761	21639932	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	21650465	21650622	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	21651887	21651988	.	+	.	Parent=hg002_chrY_paternal_446.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21627119	21627121	.	+	0	Parent=hg002_chrY_paternal_446.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21627733	21627810	.	+	0	Parent=hg002_chrY_paternal_446.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21630824	21631004	.	+	0	Parent=hg002_chrY_paternal_446.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21632240	21632337	.	+	2	Parent=hg002_chrY_paternal_446.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21639761	21639932	.	+	0	Parent=hg002_chrY_paternal_446.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21650465	21650622	.	+	2	Parent=hg002_chrY_paternal_446.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	21651887	21651988	.	+	0	Parent=hg002_chrY_paternal_446.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	21679732	21714554	.	-	.	ID=hg002_chrY_paternal_447;gene_name=HSFY4P;gene_biotype=pseudogene;origin_ID=HSFY4P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.365_0
HG002_chrY	Liftoff	gene	21732345	21733507	.	+	.	ID=hg002_chrY_paternal_448;gene_name=GAPDHP17;gene_biotype=pseudogene;origin_ID=GAPDHP17;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.366_0
HG002_chrY	Liftoff	gene	21772817	21778576	.	-	.	ID=hg002_chrY_paternal_449;gene_name=TMEM167AP1;gene_biotype=pseudogene;origin_ID=TMEM167AP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.367_0
HG002_chrY	Liftoff	gene	22001860	22002171	.	+	.	ID=hg002_chrY_paternal_450;gene_name=TOMM22P1;gene_biotype=pseudogene;origin_ID=TOMM22P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.368_0
HG002_chrY	Liftoff	gene	22009637	22043969	.	+	.	ID=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;origin_ID=LOC105377225;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.369_0
HG002_chrY	Liftoff	transcript	22009637	22041214	.	+	.	ID=hg002_chrY_paternal_451.1;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_938635.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.1;transcript_name=hg002_chrY_paternal_451.1
HG002_chrY	Liftoff	exon	22009637	22009872	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019183	22019233	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019426	22019520	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22009637	22041214	.	+	.	ID=hg002_chrY_paternal_451.2;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_938636.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.2;transcript_name=hg002_chrY_paternal_451.2
HG002_chrY	Liftoff	exon	22009637	22009872	.	+	.	Parent=hg002_chrY_paternal_451.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019426	22019520	.	+	.	Parent=hg002_chrY_paternal_451.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22009637	22041214	.	+	.	ID=hg002_chrY_paternal_451.3;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_938637.4;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.3;transcript_name=hg002_chrY_paternal_451.3
HG002_chrY	Liftoff	exon	22009637	22009872	.	+	.	Parent=hg002_chrY_paternal_451.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019549	22019602	.	+	.	Parent=hg002_chrY_paternal_451.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22009637	22043969	.	+	.	ID=hg002_chrY_paternal_451.4;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_007068465.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.4;transcript_name=hg002_chrY_paternal_451.4
HG002_chrY	Liftoff	exon	22009637	22009872	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22015787	22015878	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019183	22019233	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019426	22019520	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22043969	.	+	.	Parent=hg002_chrY_paternal_451.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22015046	22041214	.	+	.	ID=hg002_chrY_paternal_451.5;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_001756071.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.5;transcript_name=hg002_chrY_paternal_451.5
HG002_chrY	Liftoff	exon	22015046	22019233	.	+	.	Parent=hg002_chrY_paternal_451.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019426	22019602	.	+	.	Parent=hg002_chrY_paternal_451.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22015046	22041214	.	+	.	ID=hg002_chrY_paternal_451.6;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_001756074.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.6;transcript_name=hg002_chrY_paternal_451.6
HG002_chrY	Liftoff	exon	22015046	22019233	.	+	.	Parent=hg002_chrY_paternal_451.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019549	22019602	.	+	.	Parent=hg002_chrY_paternal_451.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023838	22023972	.	+	.	Parent=hg002_chrY_paternal_451.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22015046	22041214	.	+	.	ID=hg002_chrY_paternal_451.7;Parent=hg002_chrY_paternal_451;transcript_biotype=lnc_RNA;origin_ID=XR_007068466.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_451;gene_name=LOC105377225;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_451.7;transcript_name=hg002_chrY_paternal_451.7
HG002_chrY	Liftoff	exon	22015046	22019233	.	+	.	Parent=hg002_chrY_paternal_451.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22019426	22019602	.	+	.	Parent=hg002_chrY_paternal_451.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22022588	22022641	.	+	.	Parent=hg002_chrY_paternal_451.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22023679	22023770	.	+	.	Parent=hg002_chrY_paternal_451.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22040951	22041214	.	+	.	Parent=hg002_chrY_paternal_451.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	22092346	22092777	.	-	.	ID=hg002_chrY_paternal_452;gene_name=NEFLP1;gene_biotype=pseudogene;origin_ID=NEFLP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.370_0
HG002_chrY	Liftoff	gene	22099132	22124369	.	+	.	ID=hg002_chrY_paternal_453;gene_name=LOC107987346;gene_biotype=lncRNA;origin_ID=LOC107987346;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.371_0
HG002_chrY	Liftoff	transcript	22099132	22124369	.	+	.	ID=hg002_chrY_paternal_453.1;Parent=hg002_chrY_paternal_453;transcript_biotype=lnc_RNA;origin_ID=XR_001756076.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_453;gene_name=LOC107987346;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_453.1;transcript_name=hg002_chrY_paternal_453.1
HG002_chrY	Liftoff	exon	22099132	22099169	.	+	.	Parent=hg002_chrY_paternal_453.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22099347	22099454	.	+	.	Parent=hg002_chrY_paternal_453.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22121545	22124369	.	+	.	Parent=hg002_chrY_paternal_453.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22099132	22124369	.	+	.	ID=hg002_chrY_paternal_453.2;Parent=hg002_chrY_paternal_453;transcript_biotype=lnc_RNA;origin_ID=XR_007068467.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_453;gene_name=LOC107987346;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_453.2;transcript_name=hg002_chrY_paternal_453.2
HG002_chrY	Liftoff	exon	22099132	22099169	.	+	.	Parent=hg002_chrY_paternal_453.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22099347	22099454	.	+	.	Parent=hg002_chrY_paternal_453.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22121545	22121703	.	+	.	Parent=hg002_chrY_paternal_453.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22124118	22124369	.	+	.	Parent=hg002_chrY_paternal_453.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	22119060	22173999	.	-	.	ID=hg002_chrY_paternal_454;gene_name=LOC107987347;gene_biotype=lncRNA;origin_ID=LOC107987347;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.372_0
HG002_chrY	Liftoff	transcript	22119060	22173999	.	-	.	ID=hg002_chrY_paternal_454.1;Parent=hg002_chrY_paternal_454;transcript_biotype=lnc_RNA;origin_ID=XR_001756079.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_454;gene_name=LOC107987347;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_454.1;transcript_name=hg002_chrY_paternal_454.1
HG002_chrY	Liftoff	exon	22119060	22120145	.	-	.	Parent=hg002_chrY_paternal_454.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22167144	22167209	.	-	.	Parent=hg002_chrY_paternal_454.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22173550	22173999	.	-	.	Parent=hg002_chrY_paternal_454.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22182150	22190425	.	+	.	ID=hg002_chrY_paternal_455;gene_name=RBMY2SP;gene_biotype=pseudogene;origin_ID=RBMY2SP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.373_0
HG002_chrY	Liftoff	gene	22252897	22322839	.	-	.	ID=hg002_chrY_paternal_456;gene_name=PRORY;gene_biotype=lncRNA;origin_ID=PRORY;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.374_0
HG002_chrY	Liftoff	transcript	22252897	22322839	.	-	.	ID=hg002_chrY_paternal_456.1;Parent=hg002_chrY_paternal_456;transcript_biotype=lnc_RNA;origin_ID=NR_170372.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_456;gene_name=PRORY;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_456.1;transcript_name=hg002_chrY_paternal_456.1
HG002_chrY	Liftoff	exon	22252897	22254271	.	-	.	Parent=hg002_chrY_paternal_456.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22254423	22254787	.	-	.	Parent=hg002_chrY_paternal_456.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22254904	22254960	.	-	.	Parent=hg002_chrY_paternal_456.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22257223	22257347	.	-	.	Parent=hg002_chrY_paternal_456.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22322637	22322839	.	-	.	Parent=hg002_chrY_paternal_456.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22266140	22272554	.	-	.	ID=hg002_chrY_paternal_457;gene_name=RBMY2EP;gene_biotype=transcribed_pseudogene;origin_ID=RBMY2EP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.375_0
HG002_chrY	Liftoff	transcript	22266140	22272554	.	-	.	ID=hg002_chrY_paternal_457.1;Parent=hg002_chrY_paternal_457;transcript_biotype=transcript;origin_ID=NR_001574.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_457;gene_name=RBMY2EP;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_457.1;transcript_name=hg002_chrY_paternal_457.1
HG002_chrY	Liftoff	exon	22266140	22266283	.	-	.	Parent=hg002_chrY_paternal_457.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22266692	22266780	.	-	.	Parent=hg002_chrY_paternal_457.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22266863	22266973	.	-	.	Parent=hg002_chrY_paternal_457.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22271915	22272018	.	-	.	Parent=hg002_chrY_paternal_457.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22272469	22272554	.	-	.	Parent=hg002_chrY_paternal_457.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22301316	22308340	.	-	.	ID=hg002_chrY_paternal_458;gene_name=RBMY2TP;gene_biotype=pseudogene;origin_ID=RBMY2TP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.376_0
HG002_chrY	Liftoff	gene	22339122	22341932	.	+	.	ID=hg002_chrY_paternal_459;gene_name=TSPY14P;gene_biotype=pseudogene;origin_ID=TSPY14P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.377_0
HG002_chrY	Liftoff	gene	22364412	22373329	.	+	.	ID=hg002_chrY_paternal_460;gene_name=RBMY1HP;gene_biotype=pseudogene;origin_ID=RBMY1HP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.378_0
HG002_chrY	Liftoff	gene	22379291	22381462	.	-	.	ID=hg002_chrY_paternal_461;gene_name=TSPY23P;gene_biotype=pseudogene;origin_ID=TSPY23P;coverage=1.0;sequence_ID=0.995;extra_copy_number=4;copy_num_ID=REF.chrY.411_4
HG002_chrY	Liftoff	gene	22382330	22396768	.	+	.	ID=hg002_chrY_paternal_462;gene_name=RBMY1A1;gene_biotype=protein_coding;origin_ID=RBMY1A1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=1;copy_num_ID=REF.chrY.389_1
HG002_chrY	Liftoff	transcript	22382330	22395780	.	+	.	ID=hg002_chrY_paternal_462.1;Parent=hg002_chrY_paternal_462;transcript_biotype=NA;origin_ID=XM_011531437.3;matches_ref_protein=True;valid_ORF=False;missing_stop_codon=True;extra_copy_number=1;manual=True;gene_id=hg002_chrY_paternal_462;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_462.1;transcript_name=hg002_chrY_paternal_462.1
HG002_chrY	Liftoff	exon	22382330	22382477	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384339	22384451	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384916	22385019	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	22388039	22388216	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	22390132	22390284	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	22392295	22392409	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393365	22393475	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393917	22394027	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	exon	22394462	22394572	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395494	22395604	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395692	22395780	.	+	.	Parent=hg002_chrY_paternal_462.1;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384343	22384451	.	+	0	Parent=hg002_chrY_paternal_462.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384916	22385019	.	+	2	Parent=hg002_chrY_paternal_462.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22388039	22388216	.	+	0	Parent=hg002_chrY_paternal_462.1;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22390132	22390284	.	+	2	Parent=hg002_chrY_paternal_462.1;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22392295	22392409	.	+	2	Parent=hg002_chrY_paternal_462.1;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393365	22393475	.	+	1	Parent=hg002_chrY_paternal_462.1;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393917	22394027	.	+	1	Parent=hg002_chrY_paternal_462.1;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22394462	22394572	.	+	1	Parent=hg002_chrY_paternal_462.1;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395494	22395604	.	+	1	Parent=hg002_chrY_paternal_462.1;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395692	22395779	.	+	1	Parent=hg002_chrY_paternal_462.1;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	transcript	22382330	22396768	.	+	.	ID=hg002_chrY_paternal_462.2;Parent=hg002_chrY_paternal_462;transcript_biotype=NA;origin_ID=NM_001320944.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_462;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_462.2;transcript_name=hg002_chrY_paternal_462.2
HG002_chrY	Liftoff	exon	22382330	22382477	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384339	22384451	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384916	22385019	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	22388039	22388216	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	22390132	22390284	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	22392295	22392409	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393365	22393475	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393917	22394027	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	exon	22394462	22394572	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395692	22395780	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	exon	22396192	22396768	.	+	.	Parent=hg002_chrY_paternal_462.2;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384343	22384451	.	+	0	Parent=hg002_chrY_paternal_462.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384916	22385019	.	+	2	Parent=hg002_chrY_paternal_462.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22388039	22388216	.	+	0	Parent=hg002_chrY_paternal_462.2;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22390132	22390284	.	+	2	Parent=hg002_chrY_paternal_462.2;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22392295	22392409	.	+	2	Parent=hg002_chrY_paternal_462.2;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393365	22393475	.	+	1	Parent=hg002_chrY_paternal_462.2;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393917	22394027	.	+	1	Parent=hg002_chrY_paternal_462.2;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22394462	22394572	.	+	1	Parent=hg002_chrY_paternal_462.2;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395692	22395780	.	+	1	Parent=hg002_chrY_paternal_462.2;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22396192	22396490	.	+	2	Parent=hg002_chrY_paternal_462.2;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	transcript	22382330	22396768	.	+	.	ID=hg002_chrY_paternal_462.3;Parent=hg002_chrY_paternal_462;transcript_biotype=NA;origin_ID=NM_001320945.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;gene_id=hg002_chrY_paternal_462;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_462.3;transcript_name=hg002_chrY_paternal_462.3
HG002_chrY	Liftoff	exon	22382330	22382477	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384339	22384451	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384916	22385019	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	22390132	22390284	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	22392295	22392409	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393365	22393475	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393917	22394027	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	exon	22394462	22394572	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395494	22395604	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395692	22395780	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	exon	22396192	22396768	.	+	.	Parent=hg002_chrY_paternal_462.3;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22390161	22390284	.	+	0	Parent=hg002_chrY_paternal_462.3;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22392295	22392409	.	+	2	Parent=hg002_chrY_paternal_462.3;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393365	22393475	.	+	1	Parent=hg002_chrY_paternal_462.3;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393917	22394027	.	+	1	Parent=hg002_chrY_paternal_462.3;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22394462	22394572	.	+	1	Parent=hg002_chrY_paternal_462.3;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395494	22395604	.	+	1	Parent=hg002_chrY_paternal_462.3;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395692	22395780	.	+	1	Parent=hg002_chrY_paternal_462.3;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22396192	22396490	.	+	2	Parent=hg002_chrY_paternal_462.3;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	transcript	22382330	22396768	.	+	.	ID=hg002_chrY_paternal_462.4;Parent=hg002_chrY_paternal_462;transcript_biotype=NA;origin_ID=NM_005058.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=1;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_462;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_462.4;transcript_name=hg002_chrY_paternal_462.4
HG002_chrY	Liftoff	exon	22382330	22382477	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384339	22384451	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	22384916	22385019	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	22388039	22388216	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	exon	22390132	22390284	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	exon	22392295	22392409	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393365	22393475	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	exon	22393917	22394027	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	exon	22394462	22394572	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395494	22395604	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	exon	22395692	22395780	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	exon	22396192	22396768	.	+	.	Parent=hg002_chrY_paternal_462.4;exon_number=12;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384343	22384451	.	+	0	Parent=hg002_chrY_paternal_462.4;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22384916	22385019	.	+	2	Parent=hg002_chrY_paternal_462.4;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22388039	22388216	.	+	0	Parent=hg002_chrY_paternal_462.4;exon_number=4;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22390132	22390284	.	+	2	Parent=hg002_chrY_paternal_462.4;exon_number=5;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22392295	22392409	.	+	2	Parent=hg002_chrY_paternal_462.4;exon_number=6;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393365	22393475	.	+	1	Parent=hg002_chrY_paternal_462.4;exon_number=7;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22393917	22394027	.	+	1	Parent=hg002_chrY_paternal_462.4;exon_number=8;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22394462	22394572	.	+	1	Parent=hg002_chrY_paternal_462.4;exon_number=9;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395494	22395604	.	+	1	Parent=hg002_chrY_paternal_462.4;exon_number=10;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22395692	22395780	.	+	1	Parent=hg002_chrY_paternal_462.4;exon_number=11;extra_copy_number=1
HG002_chrY	Liftoff	CDS	22396192	22396490	.	+	2	Parent=hg002_chrY_paternal_462.4;exon_number=12;extra_copy_number=1
HG002_chrY	Liftoff	gene	22399640	22431951	.	+	.	ID=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;origin_ID=RBMY1D;coverage=1.0;sequence_ID=1.0;valid_ORFs=8;extra_copy_number=0;copy_num_ID=REF.chrY.379_0
HG002_chrY	Liftoff	transcript	22399640	22420308	.	+	.	ID=hg002_chrY_paternal_463.1;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=XM_011531486.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.1;transcript_name=hg002_chrY_paternal_463.1
HG002_chrY	Liftoff	exon	22399640	22399660	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419034	22419144	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419034	22419144	.	+	1	Parent=hg002_chrY_paternal_463.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	gene	22402821	22404992	.	-	.	ID=hg002_chrY_paternal_464;gene_name=TSPY23P;gene_biotype=pseudogene;origin_ID=TSPY23P;coverage=1.0;sequence_ID=0.996;extra_copy_number=1;copy_num_ID=REF.chrY.411_1
HG002_chrY	Liftoff	transcript	22405860	22420308	.	+	.	ID=hg002_chrY_paternal_463.2;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=NM_001006120.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.2;transcript_name=hg002_chrY_paternal_463.2
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419034	22419144	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419034	22419144	.	+	1	Parent=hg002_chrY_paternal_463.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22405860	22420308	.	+	.	ID=hg002_chrY_paternal_463.3;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=NM_001320949.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.3;transcript_name=hg002_chrY_paternal_463.3
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22405860	22420308	.	+	.	ID=hg002_chrY_paternal_463.4;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=NM_001320950.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.4;transcript_name=hg002_chrY_paternal_463.4
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22406681	22406745	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408470	22408559	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407931	22407981	.	+	0	Parent=hg002_chrY_paternal_463.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408470	22408559	.	+	0	Parent=hg002_chrY_paternal_463.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22405860	22420308	.	+	.	ID=hg002_chrY_paternal_463.5;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=XM_011531489.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.5;transcript_name=hg002_chrY_paternal_463.5
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22405860	22421726	.	+	.	ID=hg002_chrY_paternal_463.6;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=XM_011531488.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.6;transcript_name=hg002_chrY_paternal_463.6
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419034	22419144	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22420568	22421726	.	+	.	Parent=hg002_chrY_paternal_463.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419034	22419144	.	+	1	Parent=hg002_chrY_paternal_463.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22420568	22420575	.	+	2	Parent=hg002_chrY_paternal_463.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22405860	22431951	.	+	.	ID=hg002_chrY_paternal_463.7;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=XM_011531487.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.7;transcript_name=hg002_chrY_paternal_463.7
HG002_chrY	Liftoff	exon	22405860	22406007	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22407869	22407981	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22408456	22408559	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22411579	22411756	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419034	22419144	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22430568	22431951	.	+	.	Parent=hg002_chrY_paternal_463.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22407873	22407981	.	+	0	Parent=hg002_chrY_paternal_463.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22408456	22408559	.	+	2	Parent=hg002_chrY_paternal_463.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22411579	22411756	.	+	0	Parent=hg002_chrY_paternal_463.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413672	22413824	.	+	2	Parent=hg002_chrY_paternal_463.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419034	22419144	.	+	1	Parent=hg002_chrY_paternal_463.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22430568	22430644	.	+	2	Parent=hg002_chrY_paternal_463.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22408470	22420308	.	+	.	ID=hg002_chrY_paternal_463.8;Parent=hg002_chrY_paternal_463;transcript_biotype=protein_coding;origin_ID=XM_047442737.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_463;gene_name=RBMY1D;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_463.8;transcript_name=hg002_chrY_paternal_463.8
HG002_chrY	Liftoff	exon	22408470	22408559	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22413672	22413824	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22415835	22415949	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22416905	22417015	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22417457	22417567	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22418002	22418112	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419034	22419144	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419232	22419320	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22419732	22420308	.	+	.	Parent=hg002_chrY_paternal_463.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22413701	22413824	.	+	0	Parent=hg002_chrY_paternal_463.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22415835	22415949	.	+	2	Parent=hg002_chrY_paternal_463.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22416905	22417015	.	+	1	Parent=hg002_chrY_paternal_463.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22417457	22417567	.	+	1	Parent=hg002_chrY_paternal_463.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22418002	22418112	.	+	1	Parent=hg002_chrY_paternal_463.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419034	22419144	.	+	1	Parent=hg002_chrY_paternal_463.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419232	22419320	.	+	1	Parent=hg002_chrY_paternal_463.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22419732	22420030	.	+	2	Parent=hg002_chrY_paternal_463.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	22440009	22442262	.	-	.	ID=hg002_chrY_paternal_465;gene_name=LOC105379266;gene_biotype=lncRNA;origin_ID=LOC105379266;coverage=0.999;sequence_ID=0.960;extra_copy_number=1;copy_num_ID=REF.chrY.144_1
HG002_chrY	Liftoff	transcript	22440009	22442262	.	-	.	ID=hg002_chrY_paternal_465.1;Parent=hg002_chrY_paternal_465;transcript_biotype=lnc_RNA;origin_ID=XR_949068.1;extra_copy_number=1;gene_id=hg002_chrY_paternal_465;gene_name=LOC105379266;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_465.1;transcript_name=hg002_chrY_paternal_465.1
HG002_chrY	Liftoff	exon	22440009	22441289	.	-	.	Parent=hg002_chrY_paternal_465.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	22441968	22442046	.	-	.	Parent=hg002_chrY_paternal_465.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	22442127	22442262	.	-	.	Parent=hg002_chrY_paternal_465.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	22454568	22465634	.	-	.	ID=hg002_chrY_paternal_466;gene_name=TTTY13;gene_biotype=lncRNA;origin_ID=TTTY13;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.380_0
HG002_chrY	Liftoff	transcript	22454568	22465634	.	-	.	ID=hg002_chrY_paternal_466.1;Parent=hg002_chrY_paternal_466;transcript_biotype=lnc_RNA;origin_ID=NR_001537.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_466;gene_name=TTTY13;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_466.1;transcript_name=hg002_chrY_paternal_466.1
HG002_chrY	Liftoff	exon	22454568	22454630	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22455751	22455842	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22458469	22458630	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22460240	22460338	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22460934	22461095	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22465554	22465634	.	-	.	Parent=hg002_chrY_paternal_466.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22502544	22503080	.	-	.	ID=hg002_chrY_paternal_467;gene_name=ELOCP5;gene_biotype=pseudogene;origin_ID=ELOCP5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.381_0
HG002_chrY	Liftoff	gene	22507566	22510433	.	-	.	ID=hg002_chrY_paternal_468;gene_name=CDY10P;gene_biotype=pseudogene;origin_ID=CDY10P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.382_0
HG002_chrY	Liftoff	gene	22532791	22545326	.	+	.	ID=hg002_chrY_paternal_469;gene_name=USP9YP3;gene_biotype=pseudogene;origin_ID=USP9YP3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.383_0
HG002_chrY	Liftoff	gene	22548361	22550538	.	-	.	ID=hg002_chrY_paternal_470;gene_name=USP9YP8;gene_biotype=pseudogene;origin_ID=USP9YP8;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.384_0
HG002_chrY	Liftoff	gene	22567364	22570392	.	+	.	ID=hg002_chrY_paternal_471;gene_name=CDY11P;gene_biotype=pseudogene;origin_ID=CDY11P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.385_0
HG002_chrY	Liftoff	gene	22640394	22655046	.	-	.	ID=hg002_chrY_paternal_472;gene_name=LOC105377236;gene_biotype=lncRNA;origin_ID=LOC105377236;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.386_0
HG002_chrY	Liftoff	transcript	22640394	22653818	.	-	.	ID=hg002_chrY_paternal_472.1;Parent=hg002_chrY_paternal_472;transcript_biotype=lnc_RNA;origin_ID=XR_938659.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_472;gene_name=LOC105377236;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_472.1;transcript_name=hg002_chrY_paternal_472.1
HG002_chrY	Liftoff	exon	22640394	22641937	.	-	.	Parent=hg002_chrY_paternal_472.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22649317	22649452	.	-	.	Parent=hg002_chrY_paternal_472.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652448	22652609	.	-	.	Parent=hg002_chrY_paternal_472.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652854	22653818	.	-	.	Parent=hg002_chrY_paternal_472.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22640394	22653818	.	-	.	ID=hg002_chrY_paternal_472.2;Parent=hg002_chrY_paternal_472;transcript_biotype=lnc_RNA;origin_ID=XR_938661.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_472;gene_name=LOC105377236;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_472.2;transcript_name=hg002_chrY_paternal_472.2
HG002_chrY	Liftoff	exon	22640394	22641937	.	-	.	Parent=hg002_chrY_paternal_472.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22649317	22649452	.	-	.	Parent=hg002_chrY_paternal_472.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652448	22652522	.	-	.	Parent=hg002_chrY_paternal_472.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652854	22653818	.	-	.	Parent=hg002_chrY_paternal_472.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22640394	22655046	.	-	.	ID=hg002_chrY_paternal_472.3;Parent=hg002_chrY_paternal_472;transcript_biotype=lnc_RNA;origin_ID=XR_938660.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_472;gene_name=LOC105377236;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_472.3;transcript_name=hg002_chrY_paternal_472.3
HG002_chrY	Liftoff	exon	22640394	22641937	.	-	.	Parent=hg002_chrY_paternal_472.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22649317	22649452	.	-	.	Parent=hg002_chrY_paternal_472.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652448	22652609	.	-	.	Parent=hg002_chrY_paternal_472.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22652854	22653639	.	-	.	Parent=hg002_chrY_paternal_472.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22654891	22655046	.	-	.	Parent=hg002_chrY_paternal_472.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22642628	22649453	.	-	.	ID=hg002_chrY_paternal_473;gene_name=OFD1P16Y;gene_biotype=pseudogene;origin_ID=OFD1P16Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.387_0
HG002_chrY	Liftoff	gene	22667509	22670397	.	+	.	ID=hg002_chrY_paternal_474;gene_name=LOC105377237;gene_biotype=lncRNA;origin_ID=LOC105377237;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.388_0
HG002_chrY	Liftoff	transcript	22667509	22670397	.	+	.	ID=hg002_chrY_paternal_474.1;Parent=hg002_chrY_paternal_474;transcript_biotype=lnc_RNA;origin_ID=XR_938662.4;extra_copy_number=0;gene_id=hg002_chrY_paternal_474;gene_name=LOC105377237;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_474.1;transcript_name=hg002_chrY_paternal_474.1
HG002_chrY	Liftoff	exon	22667509	22668746	.	+	.	Parent=hg002_chrY_paternal_474.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22669919	22670078	.	+	.	Parent=hg002_chrY_paternal_474.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22670239	22670397	.	+	.	Parent=hg002_chrY_paternal_474.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	22711322	22725770	.	-	.	ID=hg002_chrY_paternal_475;gene_name=RBMY1A1;gene_biotype=protein_coding;origin_ID=RBMY1A1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.389_0
HG002_chrY	Liftoff	transcript	22711322	22725770	.	-	.	ID=hg002_chrY_paternal_475.1;Parent=hg002_chrY_paternal_475;transcript_biotype=NA;origin_ID=NM_001320944.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_475;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_475.1;transcript_name=hg002_chrY_paternal_475.1
HG002_chrY	Liftoff	exon	22711322	22711898	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712310	22712398	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22713518	22713628	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714063	22714173	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714615	22714725	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22715681	22715795	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22717806	22717958	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22719874	22720051	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723071	22723174	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723649	22723761	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22725623	22725770	.	-	.	Parent=hg002_chrY_paternal_475.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22711600	22711898	.	-	2	Parent=hg002_chrY_paternal_475.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712310	22712398	.	-	1	Parent=hg002_chrY_paternal_475.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22713518	22713628	.	-	1	Parent=hg002_chrY_paternal_475.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714063	22714173	.	-	1	Parent=hg002_chrY_paternal_475.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714615	22714725	.	-	1	Parent=hg002_chrY_paternal_475.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22715681	22715795	.	-	2	Parent=hg002_chrY_paternal_475.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22717806	22717958	.	-	2	Parent=hg002_chrY_paternal_475.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22719874	22720051	.	-	0	Parent=hg002_chrY_paternal_475.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723071	22723174	.	-	2	Parent=hg002_chrY_paternal_475.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723649	22723757	.	-	0	Parent=hg002_chrY_paternal_475.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22711322	22725770	.	-	.	ID=hg002_chrY_paternal_475.2;Parent=hg002_chrY_paternal_475;transcript_biotype=NA;origin_ID=NM_001320945.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_475;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_475.2;transcript_name=hg002_chrY_paternal_475.2
HG002_chrY	Liftoff	exon	22711322	22711898	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712310	22712398	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712486	22712596	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22713518	22713628	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714063	22714173	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714615	22714725	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22715681	22715795	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22717806	22717958	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723071	22723174	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723649	22723761	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22725623	22725770	.	-	.	Parent=hg002_chrY_paternal_475.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22711600	22711898	.	-	2	Parent=hg002_chrY_paternal_475.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712310	22712398	.	-	1	Parent=hg002_chrY_paternal_475.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712486	22712596	.	-	1	Parent=hg002_chrY_paternal_475.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22713518	22713628	.	-	1	Parent=hg002_chrY_paternal_475.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714063	22714173	.	-	1	Parent=hg002_chrY_paternal_475.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714615	22714725	.	-	1	Parent=hg002_chrY_paternal_475.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22715681	22715795	.	-	2	Parent=hg002_chrY_paternal_475.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22717806	22717929	.	-	0	Parent=hg002_chrY_paternal_475.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22711322	22725770	.	-	.	ID=hg002_chrY_paternal_475.3;Parent=hg002_chrY_paternal_475;transcript_biotype=NA;origin_ID=NM_005058.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_475;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_475.3;transcript_name=hg002_chrY_paternal_475.3
HG002_chrY	Liftoff	exon	22711322	22711898	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712310	22712398	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712486	22712596	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22713518	22713628	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714063	22714173	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714615	22714725	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22715681	22715795	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22717806	22717958	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22719874	22720051	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723071	22723174	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723649	22723761	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22725623	22725770	.	-	.	Parent=hg002_chrY_paternal_475.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22711600	22711898	.	-	2	Parent=hg002_chrY_paternal_475.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712310	22712398	.	-	1	Parent=hg002_chrY_paternal_475.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712486	22712596	.	-	1	Parent=hg002_chrY_paternal_475.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22713518	22713628	.	-	1	Parent=hg002_chrY_paternal_475.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714063	22714173	.	-	1	Parent=hg002_chrY_paternal_475.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714615	22714725	.	-	1	Parent=hg002_chrY_paternal_475.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22715681	22715795	.	-	2	Parent=hg002_chrY_paternal_475.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22717806	22717958	.	-	2	Parent=hg002_chrY_paternal_475.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22719874	22720051	.	-	0	Parent=hg002_chrY_paternal_475.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723071	22723174	.	-	2	Parent=hg002_chrY_paternal_475.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723649	22723757	.	-	0	Parent=hg002_chrY_paternal_475.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22712310	22725770	.	-	.	ID=hg002_chrY_paternal_475.4;Parent=hg002_chrY_paternal_475;transcript_biotype=NA;origin_ID=XM_011531437.3;matches_ref_protein=True;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0;manual=True;gene_id=hg002_chrY_paternal_475;gene_name=RBMY1A1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_475.4;transcript_name=hg002_chrY_paternal_475.4
HG002_chrY	Liftoff	exon	22712310	22712398	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22712486	22712596	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22713518	22713628	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714063	22714173	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22714615	22714725	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22715681	22715795	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22717806	22717958	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22719874	22720051	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723071	22723174	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22723649	22723761	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22725623	22725770	.	-	.	Parent=hg002_chrY_paternal_475.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712311	22712398	.	-	1	Parent=hg002_chrY_paternal_475.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22712486	22712596	.	-	1	Parent=hg002_chrY_paternal_475.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22713518	22713628	.	-	1	Parent=hg002_chrY_paternal_475.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714063	22714173	.	-	1	Parent=hg002_chrY_paternal_475.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22714615	22714725	.	-	1	Parent=hg002_chrY_paternal_475.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22715681	22715795	.	-	2	Parent=hg002_chrY_paternal_475.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22717806	22717958	.	-	2	Parent=hg002_chrY_paternal_475.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22719874	22720051	.	-	0	Parent=hg002_chrY_paternal_475.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723071	22723174	.	-	2	Parent=hg002_chrY_paternal_475.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22723649	22723757	.	-	0	Parent=hg002_chrY_paternal_475.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	22726638	22728809	.	+	.	ID=hg002_chrY_paternal_476;gene_name=TSPY23P;gene_biotype=pseudogene;origin_ID=TSPY23P;coverage=1.0;sequence_ID=0.995;extra_copy_number=3;copy_num_ID=REF.chrY.411_3
HG002_chrY	Liftoff	gene	22733421	22749264	.	-	.	ID=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;origin_ID=RBMY1E;coverage=1.0;sequence_ID=1.0;valid_ORFs=5;extra_copy_number=0;copy_num_ID=REF.chrY.390_0
HG002_chrY	Liftoff	transcript	22733421	22749264	.	-	.	ID=hg002_chrY_paternal_477.1;Parent=hg002_chrY_paternal_477;transcript_biotype=protein_coding;origin_ID=XM_011531494.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_477.1;transcript_name=hg002_chrY_paternal_477.1
HG002_chrY	Liftoff	exon	22733421	22734602	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	22735850	22735938	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22736025	22736135	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737057	22737167	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737602	22737712	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22738154	22738264	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22739220	22739334	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22741345	22741497	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22743413	22743590	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22746610	22746713	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22747178	22747290	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22749152	22749264	.	-	.	Parent=hg002_chrY_paternal_477.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22734595	22734602	.	-	2	Parent=hg002_chrY_paternal_477.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735850	22735938	.	-	1	Parent=hg002_chrY_paternal_477.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22736025	22736135	.	-	1	Parent=hg002_chrY_paternal_477.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737057	22737167	.	-	1	Parent=hg002_chrY_paternal_477.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737602	22737712	.	-	1	Parent=hg002_chrY_paternal_477.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22738154	22738264	.	-	1	Parent=hg002_chrY_paternal_477.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22739220	22739334	.	-	2	Parent=hg002_chrY_paternal_477.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22741345	22741497	.	-	2	Parent=hg002_chrY_paternal_477.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22743413	22743590	.	-	0	Parent=hg002_chrY_paternal_477.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22746610	22746713	.	-	2	Parent=hg002_chrY_paternal_477.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22747178	22747286	.	-	0	Parent=hg002_chrY_paternal_477.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22734866	22746700	.	-	.	ID=hg002_chrY_paternal_477.2;Parent=hg002_chrY_paternal_477;transcript_biotype=protein_coding;origin_ID=XM_047442738.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_477.2;transcript_name=hg002_chrY_paternal_477.2
HG002_chrY	Liftoff	exon	22734866	22735438	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22735850	22735938	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22736025	22736135	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737057	22737167	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737602	22737712	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22738154	22738264	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22739220	22739334	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22741345	22741497	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22746610	22746700	.	-	.	Parent=hg002_chrY_paternal_477.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735140	22735438	.	-	2	Parent=hg002_chrY_paternal_477.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735850	22735938	.	-	1	Parent=hg002_chrY_paternal_477.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22736025	22736135	.	-	1	Parent=hg002_chrY_paternal_477.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737057	22737167	.	-	1	Parent=hg002_chrY_paternal_477.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737602	22737712	.	-	1	Parent=hg002_chrY_paternal_477.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22738154	22738264	.	-	1	Parent=hg002_chrY_paternal_477.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22739220	22739334	.	-	2	Parent=hg002_chrY_paternal_477.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22741345	22741468	.	-	0	Parent=hg002_chrY_paternal_477.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22734866	22749264	.	-	.	ID=hg002_chrY_paternal_477.3;Parent=hg002_chrY_paternal_477;transcript_biotype=protein_coding;origin_ID=NM_001006118.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_477.3;transcript_name=hg002_chrY_paternal_477.3
HG002_chrY	Liftoff	exon	22734866	22735438	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	22735850	22735938	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22736025	22736135	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737057	22737167	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737602	22737712	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22738154	22738264	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22739220	22739334	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22741345	22741497	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22743413	22743590	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22746610	22746713	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22747178	22747290	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22749152	22749264	.	-	.	Parent=hg002_chrY_paternal_477.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735140	22735438	.	-	2	Parent=hg002_chrY_paternal_477.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735850	22735938	.	-	1	Parent=hg002_chrY_paternal_477.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22736025	22736135	.	-	1	Parent=hg002_chrY_paternal_477.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737057	22737167	.	-	1	Parent=hg002_chrY_paternal_477.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737602	22737712	.	-	1	Parent=hg002_chrY_paternal_477.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22738154	22738264	.	-	1	Parent=hg002_chrY_paternal_477.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22739220	22739334	.	-	2	Parent=hg002_chrY_paternal_477.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22741345	22741497	.	-	2	Parent=hg002_chrY_paternal_477.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22743413	22743590	.	-	0	Parent=hg002_chrY_paternal_477.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22746610	22746713	.	-	2	Parent=hg002_chrY_paternal_477.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22747178	22747286	.	-	0	Parent=hg002_chrY_paternal_477.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22734866	22749264	.	-	.	ID=hg002_chrY_paternal_477.4;Parent=hg002_chrY_paternal_477;transcript_biotype=protein_coding;origin_ID=XM_011531493.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_477.4;transcript_name=hg002_chrY_paternal_477.4
HG002_chrY	Liftoff	exon	22734866	22735438	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22735850	22735938	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737057	22737167	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22737602	22737712	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22738154	22738264	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22739220	22739334	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22741345	22741497	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22743413	22743590	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22746610	22746713	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22747178	22747290	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22749152	22749264	.	-	.	Parent=hg002_chrY_paternal_477.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735140	22735438	.	-	2	Parent=hg002_chrY_paternal_477.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735850	22735938	.	-	1	Parent=hg002_chrY_paternal_477.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737057	22737167	.	-	1	Parent=hg002_chrY_paternal_477.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22737602	22737712	.	-	1	Parent=hg002_chrY_paternal_477.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22738154	22738264	.	-	1	Parent=hg002_chrY_paternal_477.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22739220	22739334	.	-	2	Parent=hg002_chrY_paternal_477.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22741345	22741497	.	-	2	Parent=hg002_chrY_paternal_477.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22743413	22743590	.	-	0	Parent=hg002_chrY_paternal_477.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22746610	22746713	.	-	2	Parent=hg002_chrY_paternal_477.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22747178	22747286	.	-	0	Parent=hg002_chrY_paternal_477.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22734866	22749264	.	-	.	ID=hg002_chrY_paternal_477.5;Parent=hg002_chrY_paternal_477;transcript_biotype=protein_coding;origin_ID=XM_011531495.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_477;gene_name=RBMY1E;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_477.5;transcript_name=hg002_chrY_paternal_477.5
HG002_chrY	Liftoff	exon	22734866	22735438	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22735850	22735938	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22738154	22738264	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22739220	22739334	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22741345	22741497	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22743413	22743590	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22746610	22746713	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22747178	22747290	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22749152	22749264	.	-	.	Parent=hg002_chrY_paternal_477.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735140	22735438	.	-	2	Parent=hg002_chrY_paternal_477.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22735850	22735938	.	-	1	Parent=hg002_chrY_paternal_477.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22738154	22738264	.	-	1	Parent=hg002_chrY_paternal_477.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22739220	22739334	.	-	2	Parent=hg002_chrY_paternal_477.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22741345	22741497	.	-	2	Parent=hg002_chrY_paternal_477.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22743413	22743590	.	-	0	Parent=hg002_chrY_paternal_477.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22746610	22746713	.	-	2	Parent=hg002_chrY_paternal_477.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22747178	22747286	.	-	0	Parent=hg002_chrY_paternal_477.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	22750167	22752338	.	+	.	ID=hg002_chrY_paternal_478;gene_name=TSPY23P;gene_biotype=pseudogene;origin_ID=TSPY23P;coverage=1.0;sequence_ID=0.996;extra_copy_number=2;copy_num_ID=REF.chrY.411_2
HG002_chrY	Liftoff	gene	22762414	22770476	.	-	.	ID=hg002_chrY_paternal_479;gene_name=RBMY2BP;gene_biotype=pseudogene;origin_ID=RBMY2BP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.391_0
HG002_chrY	Liftoff	gene	22803452	22836923	.	+	.	ID=hg002_chrY_paternal_480;gene_name=OFD1P8Y;gene_biotype=pseudogene;origin_ID=OFD1P8Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.392_0
HG002_chrY	Liftoff	gene	22859568	22861595	.	+	.	ID=hg002_chrY_paternal_481;gene_name=LOC107987356;gene_biotype=lncRNA;origin_ID=LOC107987356;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.393_0
HG002_chrY	Liftoff	transcript	22859568	22861595	.	+	.	ID=hg002_chrY_paternal_481.1;Parent=hg002_chrY_paternal_481;transcript_biotype=lnc_RNA;origin_ID=XR_001756091.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_481;gene_name=LOC107987356;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_481.1;transcript_name=hg002_chrY_paternal_481.1
HG002_chrY	Liftoff	exon	22859568	22859680	.	+	.	Parent=hg002_chrY_paternal_481.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22859798	22859858	.	+	.	Parent=hg002_chrY_paternal_481.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22861394	22861595	.	+	.	Parent=hg002_chrY_paternal_481.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	22879800	22880663	.	-	.	ID=hg002_chrY_paternal_482;gene_name=HSFY5P;gene_biotype=pseudogene;origin_ID=HSFY5P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.394_0
HG002_chrY	Liftoff	gene	22881003	22889361	.	-	.	ID=hg002_chrY_paternal_483;gene_name=USP9YP17;gene_biotype=pseudogene;origin_ID=USP9YP17;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.395_0
HG002_chrY	Liftoff	gene	22895845	22897053	.	+	.	ID=hg002_chrY_paternal_484;gene_name=CDY12P;gene_biotype=pseudogene;origin_ID=CDY12P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.396_0
HG002_chrY	Liftoff	gene	22900068	22900399	.	+	.	ID=hg002_chrY_paternal_485;gene_name=ELOCP15;gene_biotype=pseudogene;origin_ID=ELOCP15;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.397_0
HG002_chrY	Liftoff	gene	22903004	22927248	.	-	.	ID=hg002_chrY_paternal_486;gene_name=PRY;gene_biotype=protein_coding;origin_ID=PRY;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.398_0
HG002_chrY	Liftoff	transcript	22903004	22927248	.	-	.	ID=hg002_chrY_paternal_486.1;Parent=hg002_chrY_paternal_486;transcript_biotype=protein_coding;origin_ID=NM_004676.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_486;gene_name=PRY;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_486.1;transcript_name=hg002_chrY_paternal_486.1
HG002_chrY	Liftoff	exon	22903004	22903829	.	-	.	Parent=hg002_chrY_paternal_486.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22913320	22913435	.	-	.	Parent=hg002_chrY_paternal_486.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22916011	22916131	.	-	.	Parent=hg002_chrY_paternal_486.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22926973	22927059	.	-	.	Parent=hg002_chrY_paternal_486.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22927161	22927248	.	-	.	Parent=hg002_chrY_paternal_486.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22903571	22903829	.	-	1	Parent=hg002_chrY_paternal_486.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22913320	22913435	.	-	0	Parent=hg002_chrY_paternal_486.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22916011	22916079	.	-	0	Parent=hg002_chrY_paternal_486.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	22932954	22978788	.	-	.	ID=hg002_chrY_paternal_487;gene_name=LOC102725532;gene_biotype=lncRNA;origin_ID=LOC102725532;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.399_0
HG002_chrY	Liftoff	transcript	22932954	22978788	.	-	.	ID=hg002_chrY_paternal_487.1;Parent=hg002_chrY_paternal_487;transcript_biotype=lnc_RNA;origin_ID=XR_001756092.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_487;gene_name=LOC102725532;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_487.1;transcript_name=hg002_chrY_paternal_487.1
HG002_chrY	Liftoff	exon	22932954	22933631	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	22934147	22934264	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	22934809	22935005	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	22935126	22935211	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	22937012	22937347	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	22938814	22938903	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	22952533	22952886	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	22953317	22953435	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	22960614	22960699	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	22961008	22961230	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	22971198	22971338	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	22977888	22978197	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22978532	22978788	.	-	.	Parent=hg002_chrY_paternal_487.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	22976235	22978082	.	+	.	ID=hg002_chrY_paternal_488;gene_name=TTTY6B;gene_biotype=lncRNA;origin_ID=TTTY6B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.400_0
HG002_chrY	Liftoff	transcript	22976235	22978082	.	+	.	ID=hg002_chrY_paternal_488.1;Parent=hg002_chrY_paternal_488;transcript_biotype=lnc_RNA;origin_ID=NR_002175.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_488;gene_name=TTTY6B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_488.1;transcript_name=hg002_chrY_paternal_488.1
HG002_chrY	Liftoff	exon	22976235	22976327	.	+	.	Parent=hg002_chrY_paternal_488.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	22976546	22976683	.	+	.	Parent=hg002_chrY_paternal_488.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	22977841	22978082	.	+	.	Parent=hg002_chrY_paternal_488.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	22992805	23014266	.	-	.	ID=hg002_chrY_paternal_489;gene_name=RBMY1J;gene_biotype=protein_coding;origin_ID=RBMY1J;coverage=1.0;sequence_ID=1.0;valid_ORFs=4;extra_copy_number=0;copy_num_ID=REF.chrY.401_0
HG002_chrY	Liftoff	transcript	22992805	23014266	.	-	.	ID=hg002_chrY_paternal_489.1;Parent=hg002_chrY_paternal_489;transcript_biotype=protein_coding;origin_ID=XM_047442739.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_489;gene_name=RBMY1J;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_489.1;transcript_name=hg002_chrY_paternal_489.1
HG002_chrY	Liftoff	exon	22992805	22994308	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	22996902	22997048	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000782	23000870	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000957	23001067	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23001991	23002101	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23002536	23002646	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23003087	23003197	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23004153	23004267	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23006278	23006430	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23008346	23008523	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23011547	23011650	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23012119	23012231	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23014093	23014266	.	-	.	Parent=hg002_chrY_paternal_489.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22994298	22994308	.	-	2	Parent=hg002_chrY_paternal_489.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	22996902	22997048	.	-	2	Parent=hg002_chrY_paternal_489.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000782	23000870	.	-	1	Parent=hg002_chrY_paternal_489.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000957	23001067	.	-	1	Parent=hg002_chrY_paternal_489.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23001991	23002101	.	-	1	Parent=hg002_chrY_paternal_489.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23002536	23002646	.	-	1	Parent=hg002_chrY_paternal_489.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23003087	23003197	.	-	1	Parent=hg002_chrY_paternal_489.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23004153	23004267	.	-	2	Parent=hg002_chrY_paternal_489.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23006278	23006430	.	-	2	Parent=hg002_chrY_paternal_489.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23008346	23008523	.	-	0	Parent=hg002_chrY_paternal_489.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23011547	23011650	.	-	2	Parent=hg002_chrY_paternal_489.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23012119	23012227	.	-	0	Parent=hg002_chrY_paternal_489.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22999794	23011638	.	-	.	ID=hg002_chrY_paternal_489.2;Parent=hg002_chrY_paternal_489;transcript_biotype=protein_coding;origin_ID=XM_011531503.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_489;gene_name=RBMY1J;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_489.2;transcript_name=hg002_chrY_paternal_489.2
HG002_chrY	Liftoff	exon	22999794	23000370	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000782	23000870	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000957	23001067	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23001991	23002101	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23002536	23002646	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23003087	23003197	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23004153	23004267	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23006278	23006430	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23011547	23011638	.	-	.	Parent=hg002_chrY_paternal_489.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000072	23000370	.	-	2	Parent=hg002_chrY_paternal_489.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000782	23000870	.	-	1	Parent=hg002_chrY_paternal_489.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000957	23001067	.	-	1	Parent=hg002_chrY_paternal_489.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23001991	23002101	.	-	1	Parent=hg002_chrY_paternal_489.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23002536	23002646	.	-	1	Parent=hg002_chrY_paternal_489.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23003087	23003197	.	-	1	Parent=hg002_chrY_paternal_489.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23004153	23004267	.	-	2	Parent=hg002_chrY_paternal_489.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23006278	23006401	.	-	0	Parent=hg002_chrY_paternal_489.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22999794	23014266	.	-	.	ID=hg002_chrY_paternal_489.3;Parent=hg002_chrY_paternal_489;transcript_biotype=protein_coding;origin_ID=NM_001006117.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_489;gene_name=RBMY1J;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_489.3;transcript_name=hg002_chrY_paternal_489.3
HG002_chrY	Liftoff	exon	22999794	23000370	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000782	23000870	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000957	23001067	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23001991	23002101	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23002536	23002646	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23003087	23003197	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23004153	23004267	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23006278	23006430	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23008346	23008523	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23011547	23011650	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23012119	23012231	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23014093	23014266	.	-	.	Parent=hg002_chrY_paternal_489.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000072	23000370	.	-	2	Parent=hg002_chrY_paternal_489.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000782	23000870	.	-	1	Parent=hg002_chrY_paternal_489.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000957	23001067	.	-	1	Parent=hg002_chrY_paternal_489.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23001991	23002101	.	-	1	Parent=hg002_chrY_paternal_489.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23002536	23002646	.	-	1	Parent=hg002_chrY_paternal_489.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23003087	23003197	.	-	1	Parent=hg002_chrY_paternal_489.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23004153	23004267	.	-	2	Parent=hg002_chrY_paternal_489.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23006278	23006430	.	-	2	Parent=hg002_chrY_paternal_489.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23008346	23008523	.	-	0	Parent=hg002_chrY_paternal_489.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23011547	23011650	.	-	2	Parent=hg002_chrY_paternal_489.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23012119	23012227	.	-	0	Parent=hg002_chrY_paternal_489.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	22999794	23014266	.	-	.	ID=hg002_chrY_paternal_489.4;Parent=hg002_chrY_paternal_489;transcript_biotype=protein_coding;origin_ID=XM_011531500.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_489;gene_name=RBMY1J;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_489.4;transcript_name=hg002_chrY_paternal_489.4
HG002_chrY	Liftoff	exon	22999794	23000370	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23000782	23000870	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23001991	23002101	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23002536	23002646	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23003087	23003197	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23004153	23004267	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23006278	23006430	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23008346	23008523	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23011547	23011650	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23012119	23012231	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23014093	23014266	.	-	.	Parent=hg002_chrY_paternal_489.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000072	23000370	.	-	2	Parent=hg002_chrY_paternal_489.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23000782	23000870	.	-	1	Parent=hg002_chrY_paternal_489.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23001991	23002101	.	-	1	Parent=hg002_chrY_paternal_489.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23002536	23002646	.	-	1	Parent=hg002_chrY_paternal_489.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23003087	23003197	.	-	1	Parent=hg002_chrY_paternal_489.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23004153	23004267	.	-	2	Parent=hg002_chrY_paternal_489.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23006278	23006430	.	-	2	Parent=hg002_chrY_paternal_489.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23008346	23008523	.	-	0	Parent=hg002_chrY_paternal_489.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23011547	23011650	.	-	2	Parent=hg002_chrY_paternal_489.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23012119	23012227	.	-	0	Parent=hg002_chrY_paternal_489.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	23014856	23023102	.	+	.	ID=hg002_chrY_paternal_490;gene_name=TSPY21P;gene_biotype=pseudogene;origin_ID=TSPY21P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.402_0
HG002_chrY	Liftoff	gene	23029580	23033135	.	+	.	ID=hg002_chrY_paternal_491;gene_name=RBMY2UP;gene_biotype=pseudogene;origin_ID=RBMY2UP;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.410_1
HG002_chrY	Liftoff	gene	23029580	23036110	.	-	.	ID=hg002_chrY_paternal_492;gene_name=RBMY2VP;gene_biotype=pseudogene;origin_ID=RBMY2VP;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.409_1
HG002_chrY	Liftoff	gene	23085667	23086137	.	-	.	ID=hg002_chrY_paternal_493;gene_name=TTTY25P;gene_biotype=pseudogene;origin_ID=TTTY25P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.403_0
HG002_chrY	Liftoff	gene	23097286	23100992	.	-	.	ID=hg002_chrY_paternal_494;gene_name=LOC100652931;gene_biotype=transcribed_pseudogene;origin_ID=LOC100652931;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.404_0
HG002_chrY	Liftoff	transcript	23097286	23100992	.	-	.	ID=hg002_chrY_paternal_494.1;Parent=hg002_chrY_paternal_494;transcript_biotype=transcript;origin_ID=NR_104151.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_494;gene_name=LOC100652931;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_494.1;transcript_name=hg002_chrY_paternal_494.1
HG002_chrY	Liftoff	exon	23097286	23097307	.	-	.	Parent=hg002_chrY_paternal_494.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23098773	23098887	.	-	.	Parent=hg002_chrY_paternal_494.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23100923	23100992	.	-	.	Parent=hg002_chrY_paternal_494.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	23101465	23108811	.	-	.	ID=hg002_chrY_paternal_495;gene_name=RBMY2FP;gene_biotype=transcribed_pseudogene;origin_ID=RBMY2FP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.405_0
HG002_chrY	Liftoff	transcript	23101465	23108811	.	-	.	ID=hg002_chrY_paternal_495.1;Parent=hg002_chrY_paternal_495;transcript_biotype=transcript;origin_ID=NR_002193.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_495;gene_name=RBMY2FP;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_495.1;transcript_name=hg002_chrY_paternal_495.1
HG002_chrY	Liftoff	exon	23101465	23103177	.	-	.	Parent=hg002_chrY_paternal_495.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23106172	23106275	.	-	.	Parent=hg002_chrY_paternal_495.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23106698	23106810	.	-	.	Parent=hg002_chrY_paternal_495.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23108700	23108811	.	-	.	Parent=hg002_chrY_paternal_495.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	23109777	23113242	.	+	.	ID=hg002_chrY_paternal_496;gene_name=TSPY22P;gene_biotype=pseudogene;origin_ID=TSPY22P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.406_0
HG002_chrY	Liftoff	gene	23118800	23120878	.	+	.	ID=hg002_chrY_paternal_497;gene_name=TTTY5;gene_biotype=lncRNA;origin_ID=TTTY5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.407_0
HG002_chrY	Liftoff	transcript	23118800	23120878	.	+	.	ID=hg002_chrY_paternal_497.1;Parent=hg002_chrY_paternal_497;transcript_biotype=lnc_RNA;origin_ID=NR_001541.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_497;gene_name=TTTY5;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_497.1;transcript_name=hg002_chrY_paternal_497.1
HG002_chrY	Liftoff	exon	23118800	23119370	.	+	.	Parent=hg002_chrY_paternal_497.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23119888	23120878	.	+	.	Parent=hg002_chrY_paternal_497.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	23201197	23208446	.	-	.	ID=hg002_chrY_paternal_498;gene_name=RBMY1KP;gene_biotype=pseudogene;origin_ID=RBMY1KP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.408_0
HG002_chrY	Liftoff	gene	23212925	23219455	.	+	.	ID=hg002_chrY_paternal_499;gene_name=RBMY2VP;gene_biotype=pseudogene;origin_ID=RBMY2VP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.409_0
HG002_chrY	Liftoff	gene	23215900	23219455	.	-	.	ID=hg002_chrY_paternal_500;gene_name=RBMY2UP;gene_biotype=pseudogene;origin_ID=RBMY2UP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.410_0
HG002_chrY	Liftoff	gene	23231756	23233927	.	-	.	ID=hg002_chrY_paternal_501;gene_name=TSPY23P;gene_biotype=pseudogene;origin_ID=TSPY23P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.411_0
HG002_chrY	Liftoff	gene	23234854	23254894	.	+	.	ID=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;origin_ID=RBMY1F;coverage=1.0;sequence_ID=1.0;valid_ORFs=6;extra_copy_number=0;copy_num_ID=REF.chrY.412_0
HG002_chrY	Liftoff	transcript	23234854	23249237	.	+	.	ID=hg002_chrY_paternal_502.1;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_001303410.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.1;transcript_name=hg002_chrY_paternal_502.1
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23247964	23248074	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248244	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248661	23249237	.	+	.	Parent=hg002_chrY_paternal_502.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23247964	23248074	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248244	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248661	23248733	.	+	1	Parent=hg002_chrY_paternal_502.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23234854	23249237	.	+	.	ID=hg002_chrY_paternal_502.2;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_001382381.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.2;transcript_name=hg002_chrY_paternal_502.2
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248249	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248661	23249237	.	+	.	Parent=hg002_chrY_paternal_502.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248249	.	+	1	Parent=hg002_chrY_paternal_502.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248661	23248959	.	+	2	Parent=hg002_chrY_paternal_502.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23234854	23249237	.	+	.	ID=hg002_chrY_paternal_502.3;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_152585.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.3;transcript_name=hg002_chrY_paternal_502.3
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23247964	23248074	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248249	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248661	23249237	.	+	.	Parent=hg002_chrY_paternal_502.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23247964	23248074	.	+	1	Parent=hg002_chrY_paternal_502.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248249	.	+	1	Parent=hg002_chrY_paternal_502.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248661	23248959	.	+	2	Parent=hg002_chrY_paternal_502.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23234854	23254894	.	+	.	ID=hg002_chrY_paternal_502.4;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_001382382.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.4;transcript_name=hg002_chrY_paternal_502.4
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23247964	23248074	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248249	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23251983	23252129	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	23254723	23254894	.	+	.	Parent=hg002_chrY_paternal_502.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23247964	23248074	.	+	1	Parent=hg002_chrY_paternal_502.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248249	.	+	1	Parent=hg002_chrY_paternal_502.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23251983	23252129	.	+	2	Parent=hg002_chrY_paternal_502.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23254723	23254733	.	+	2	Parent=hg002_chrY_paternal_502.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23234854	23254894	.	+	.	ID=hg002_chrY_paternal_502.5;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_001382383.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.5;transcript_name=hg002_chrY_paternal_502.5
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248249	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23251983	23252129	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23254723	23254894	.	+	.	Parent=hg002_chrY_paternal_502.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248249	.	+	1	Parent=hg002_chrY_paternal_502.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23251983	23252129	.	+	2	Parent=hg002_chrY_paternal_502.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23254723	23254733	.	+	2	Parent=hg002_chrY_paternal_502.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23234854	23254894	.	+	.	ID=hg002_chrY_paternal_502.6;Parent=hg002_chrY_paternal_502;transcript_biotype=protein_coding;origin_ID=NM_001382384.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_502;gene_name=RBMY1F;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_502.6;transcript_name=hg002_chrY_paternal_502.6
HG002_chrY	Liftoff	exon	23234854	23234942	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23236804	23236916	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23237381	23237484	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23240508	23240685	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23242601	23242753	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23244764	23244878	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23245834	23245944	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246385	23246495	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23246930	23247040	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23248161	23248249	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23254723	23254894	.	+	.	Parent=hg002_chrY_paternal_502.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23236808	23236916	.	+	0	Parent=hg002_chrY_paternal_502.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23237381	23237484	.	+	2	Parent=hg002_chrY_paternal_502.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23240508	23240685	.	+	0	Parent=hg002_chrY_paternal_502.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23242601	23242753	.	+	2	Parent=hg002_chrY_paternal_502.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23244764	23244878	.	+	2	Parent=hg002_chrY_paternal_502.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23245834	23245944	.	+	1	Parent=hg002_chrY_paternal_502.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246385	23246495	.	+	1	Parent=hg002_chrY_paternal_502.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23246930	23247040	.	+	1	Parent=hg002_chrY_paternal_502.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23248161	23248249	.	+	1	Parent=hg002_chrY_paternal_502.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23254723	23254733	.	+	2	Parent=hg002_chrY_paternal_502.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	gene	23270299	23316081	.	+	.	ID=hg002_chrY_paternal_503;gene_name=LOC101929148;gene_biotype=lncRNA;origin_ID=LOC101929148;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.413_0
HG002_chrY	Liftoff	transcript	23270299	23316081	.	+	.	ID=hg002_chrY_paternal_503.1;Parent=hg002_chrY_paternal_503;transcript_biotype=lnc_RNA;origin_ID=NR_110413.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_503;gene_name=LOC101929148;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_503.1;transcript_name=hg002_chrY_paternal_503.1
HG002_chrY	Liftoff	exon	23270299	23270499	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23270834	23271143	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23277693	23277833	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23287805	23288027	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23288336	23288421	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23295600	23295718	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23296149	23296502	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23310132	23310221	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23311688	23312023	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23313824	23313909	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23314030	23314226	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23314771	23314888	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	23315404	23316081	.	+	.	Parent=hg002_chrY_paternal_503.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	gene	23270952	23272818	.	-	.	ID=hg002_chrY_paternal_504;gene_name=TTTY6;gene_biotype=lncRNA;origin_ID=TTTY6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.414_0
HG002_chrY	Liftoff	transcript	23270952	23272818	.	-	.	ID=hg002_chrY_paternal_504.1;Parent=hg002_chrY_paternal_504;transcript_biotype=lnc_RNA;origin_ID=NR_001527.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_504;gene_name=TTTY6;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_504.1;transcript_name=hg002_chrY_paternal_504.1
HG002_chrY	Liftoff	exon	23270952	23271190	.	-	.	Parent=hg002_chrY_paternal_504.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23272348	23272485	.	-	.	Parent=hg002_chrY_paternal_504.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23272704	23272818	.	-	.	Parent=hg002_chrY_paternal_504.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	23321767	23346019	.	+	.	ID=hg002_chrY_paternal_505;gene_name=PRY2;gene_biotype=protein_coding;origin_ID=PRY2;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.415_0
HG002_chrY	Liftoff	transcript	23321767	23346019	.	+	.	ID=hg002_chrY_paternal_505.1;Parent=hg002_chrY_paternal_505;transcript_biotype=protein_coding;origin_ID=NM_001002758.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_505;gene_name=PRY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_505.1;transcript_name=hg002_chrY_paternal_505.1
HG002_chrY	Liftoff	exon	23321767	23321854	.	+	.	Parent=hg002_chrY_paternal_505.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23321956	23322042	.	+	.	Parent=hg002_chrY_paternal_505.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23332884	23333004	.	+	.	Parent=hg002_chrY_paternal_505.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23335580	23335695	.	+	.	Parent=hg002_chrY_paternal_505.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23345194	23346019	.	+	.	Parent=hg002_chrY_paternal_505.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23332936	23333004	.	+	0	Parent=hg002_chrY_paternal_505.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23335580	23335695	.	+	0	Parent=hg002_chrY_paternal_505.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23345194	23345452	.	+	1	Parent=hg002_chrY_paternal_505.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	gene	23348624	23348955	.	-	.	ID=hg002_chrY_paternal_506;gene_name=ELOCP8;gene_biotype=pseudogene;origin_ID=ELOCP8;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.416_0
HG002_chrY	Liftoff	gene	23351970	23353178	.	-	.	ID=hg002_chrY_paternal_507;gene_name=CDY13P;gene_biotype=pseudogene;origin_ID=CDY13P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.417_0
HG002_chrY	Liftoff	gene	23359662	23368020	.	+	.	ID=hg002_chrY_paternal_508;gene_name=USP9YP24;gene_biotype=pseudogene;origin_ID=USP9YP24;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.418_0
HG002_chrY	Liftoff	gene	23368428	23369230	.	+	.	ID=hg002_chrY_paternal_509;gene_name=HSFY7P;gene_biotype=pseudogene;origin_ID=HSFY7P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.419_0
HG002_chrY	Liftoff	gene	23387429	23389426	.	-	.	ID=hg002_chrY_paternal_510;gene_name=LOC107987357;gene_biotype=lncRNA;origin_ID=LOC107987357;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.420_0
HG002_chrY	Liftoff	transcript	23387429	23389426	.	-	.	ID=hg002_chrY_paternal_510.1;Parent=hg002_chrY_paternal_510;transcript_biotype=lnc_RNA;origin_ID=XR_001756093.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_510;gene_name=LOC107987357;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_510.1;transcript_name=hg002_chrY_paternal_510.1
HG002_chrY	Liftoff	exon	23387429	23387630	.	-	.	Parent=hg002_chrY_paternal_510.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23389166	23389226	.	-	.	Parent=hg002_chrY_paternal_510.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23389344	23389426	.	-	.	Parent=hg002_chrY_paternal_510.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	23412094	23445566	.	-	.	ID=hg002_chrY_paternal_511;gene_name=OFD1P9Y;gene_biotype=pseudogene;origin_ID=OFD1P9Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.421_0
HG002_chrY	Liftoff	gene	23478551	23490680	.	+	.	ID=hg002_chrY_paternal_512;gene_name=RBMY2DP;gene_biotype=pseudogene;origin_ID=RBMY2DP;coverage=1.0;sequence_ID=0.999;extra_copy_number=1;copy_num_ID=REF.chrY.497_1
HG002_chrY	Liftoff	gene	23557403	23560649	.	+	.	ID=hg002_chrY_paternal_513;gene_name=FAM8A10P;gene_biotype=pseudogene;origin_ID=FAM8A10P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.422_0
HG002_chrY	Liftoff	gene	23593718	23601294	.	-	.	ID=hg002_chrY_paternal_514;gene_name=RBMY2WP;gene_biotype=pseudogene;origin_ID=RBMY2WP;coverage=1.0;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.423_0
HG002_chrY	Liftoff	gene	23617626	23628864	.	+	.	ID=hg002_chrY_paternal_515;gene_name=LOC107987348;gene_biotype=lncRNA;origin_ID=LOC107987348;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.424_0
HG002_chrY	Liftoff	transcript	23617626	23628864	.	+	.	ID=hg002_chrY_paternal_515.1;Parent=hg002_chrY_paternal_515;transcript_biotype=lnc_RNA;origin_ID=XR_001756080.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_515;gene_name=LOC107987348;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_515.1;transcript_name=hg002_chrY_paternal_515.1
HG002_chrY	Liftoff	exon	23617626	23618081	.	+	.	Parent=hg002_chrY_paternal_515.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23624052	23626216	.	+	.	Parent=hg002_chrY_paternal_515.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23626858	23628864	.	+	.	Parent=hg002_chrY_paternal_515.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23617626	23628864	.	+	.	ID=hg002_chrY_paternal_515.2;Parent=hg002_chrY_paternal_515;transcript_biotype=lnc_RNA;origin_ID=XR_001756081.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_515;gene_name=LOC107987348;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_515.2;transcript_name=hg002_chrY_paternal_515.2
HG002_chrY	Liftoff	exon	23617626	23618081	.	+	.	Parent=hg002_chrY_paternal_515.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23623584	23626216	.	+	.	Parent=hg002_chrY_paternal_515.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23626858	23628864	.	+	.	Parent=hg002_chrY_paternal_515.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	23683001	23684132	.	+	.	ID=hg002_chrY_paternal_516;gene_name=TTTY17A;gene_biotype=lncRNA;origin_ID=TTTY17A;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.425_0
HG002_chrY	Liftoff	transcript	23683001	23684132	.	+	.	ID=hg002_chrY_paternal_516.1;Parent=hg002_chrY_paternal_516;transcript_biotype=lnc_RNA;origin_ID=NR_001526.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_516;gene_name=TTTY17A;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_516.1;transcript_name=hg002_chrY_paternal_516.1
HG002_chrY	Liftoff	exon	23683001	23683060	.	+	.	Parent=hg002_chrY_paternal_516.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23684027	23684132	.	+	.	Parent=hg002_chrY_paternal_516.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	23692397	23693261	.	-	.	ID=hg002_chrY_paternal_517;gene_name=TRIM60P5Y;gene_biotype=pseudogene;origin_ID=TRIM60P5Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.426_0
HG002_chrY	Liftoff	gene	23698558	23699171	.	-	.	ID=hg002_chrY_paternal_518;gene_name=ZNF736P12Y;gene_biotype=pseudogene;origin_ID=ZNF736P12Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.427_0
HG002_chrY	Liftoff	gene	23767880	23804690	.	+	.	ID=hg002_chrY_paternal_519;gene_name=TTTY4C;gene_biotype=lncRNA;origin_ID=TTTY4C;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.428_0
HG002_chrY	Liftoff	transcript	23767880	23804690	.	+	.	ID=hg002_chrY_paternal_519.1;Parent=hg002_chrY_paternal_519;transcript_biotype=lnc_RNA;origin_ID=NR_002177.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_519;gene_name=TTTY4C;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_519.1;transcript_name=hg002_chrY_paternal_519.1
HG002_chrY	Liftoff	exon	23767880	23768040	.	+	.	Parent=hg002_chrY_paternal_519.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23795052	23795127	.	+	.	Parent=hg002_chrY_paternal_519.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23796932	23797039	.	+	.	Parent=hg002_chrY_paternal_519.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23803690	23804690	.	+	.	Parent=hg002_chrY_paternal_519.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	23815669	23836872	.	+	.	ID=hg002_chrY_paternal_520;gene_name=BPY2C;gene_biotype=protein_coding;origin_ID=BPY2C;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.429_0
HG002_chrY	Liftoff	transcript	23815669	23836872	.	+	.	ID=hg002_chrY_paternal_520.1;Parent=hg002_chrY_paternal_520;transcript_biotype=protein_coding;origin_ID=NM_001002761.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_520;gene_name=BPY2C;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_520.1;transcript_name=hg002_chrY_paternal_520.1
HG002_chrY	Liftoff	exon	23815669	23815699	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	23815975	23816097	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23819163	23819299	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23823709	23823827	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	23825887	23826004	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	23828859	23828964	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	23829657	23829781	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	23836332	23836456	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	23836551	23836872	.	+	.	Parent=hg002_chrY_paternal_520.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23823750	23823827	.	+	0	Parent=hg002_chrY_paternal_520.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23825887	23826004	.	+	0	Parent=hg002_chrY_paternal_520.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23828859	23828964	.	+	2	Parent=hg002_chrY_paternal_520.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23829657	23829675	.	+	1	Parent=hg002_chrY_paternal_520.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	gene	23848461	23849469	.	+	.	ID=hg002_chrY_paternal_521;gene_name=ZNF736P5Y;gene_biotype=pseudogene;origin_ID=ZNF736P5Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.430_0
HG002_chrY	Liftoff	gene	23857005	23858071	.	+	.	ID=hg002_chrY_paternal_522;gene_name=TRIM60P10Y;gene_biotype=pseudogene;origin_ID=TRIM60P10Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.431_0
HG002_chrY	Liftoff	gene	23881446	23882579	.	+	.	ID=hg002_chrY_paternal_523;gene_name=ZNF736P3Y;gene_biotype=pseudogene;origin_ID=ZNF736P3Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.432_0
HG002_chrY	Liftoff	gene	23889445	23890596	.	+	.	ID=hg002_chrY_paternal_524;gene_name=TRIM60P9Y;gene_biotype=pseudogene;origin_ID=TRIM60P9Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.433_0
HG002_chrY	Liftoff	gene	23937770	23941111	.	-	.	ID=hg002_chrY_paternal_525;gene_name=LOC105377241;gene_biotype=lncRNA;origin_ID=LOC105377241;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.434_0
HG002_chrY	Liftoff	transcript	23937770	23941111	.	-	.	ID=hg002_chrY_paternal_525.1;Parent=hg002_chrY_paternal_525;transcript_biotype=lnc_RNA;origin_ID=XR_938669.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_525;gene_name=LOC105377241;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_525.1;transcript_name=hg002_chrY_paternal_525.1
HG002_chrY	Liftoff	exon	23937770	23937870	.	-	.	Parent=hg002_chrY_paternal_525.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23940202	23940266	.	-	.	Parent=hg002_chrY_paternal_525.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23940929	23941111	.	-	.	Parent=hg002_chrY_paternal_525.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	23937770	23941111	.	-	.	ID=hg002_chrY_paternal_525.2;Parent=hg002_chrY_paternal_525;transcript_biotype=lnc_RNA;origin_ID=XR_938670.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_525;gene_name=LOC105377241;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_525.2;transcript_name=hg002_chrY_paternal_525.2
HG002_chrY	Liftoff	exon	23937770	23937870	.	-	.	Parent=hg002_chrY_paternal_525.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	23940229	23940266	.	-	.	Parent=hg002_chrY_paternal_525.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	23940929	23941111	.	-	.	Parent=hg002_chrY_paternal_525.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	23960731	24021929	.	-	.	ID=hg002_chrY_paternal_526;gene_name=DAZ3;gene_biotype=protein_coding;origin_ID=DAZ3;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.435_0
HG002_chrY	Liftoff	transcript	23960731	24021929	.	-	.	ID=hg002_chrY_paternal_526.1;Parent=hg002_chrY_paternal_526;transcript_biotype=protein_coding;origin_ID=NM_020364.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_526;gene_name=DAZ3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_526.1;transcript_name=hg002_chrY_paternal_526.1
HG002_chrY	Liftoff	exon	23960731	23962587	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	23966561	23966659	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	23971232	23971266	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	23972012	23972083	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	23981799	23981870	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	23984176	23984247	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	23986556	23986627	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	23988933	23989004	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	23991329	23991400	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	23993713	23993784	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	23996109	23996180	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	23998499	23998570	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24000942	24001013	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24013264	24013403	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24013493	24013556	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24013993	24014044	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24014605	24014696	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24014971	24015117	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24021719	24021929	.	-	.	Parent=hg002_chrY_paternal_526.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23966596	23966659	.	-	1	Parent=hg002_chrY_paternal_526.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23971232	23971266	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23972012	23972083	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23981799	23981870	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23984176	23984247	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23986556	23986627	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23988933	23989004	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23991329	23991400	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23993713	23993784	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23996109	23996180	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	23998499	23998570	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24000942	24001013	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24013264	24013403	.	-	2	Parent=hg002_chrY_paternal_526.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24013493	24013556	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24013993	24014044	.	-	1	Parent=hg002_chrY_paternal_526.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24014605	24014696	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24014971	24015117	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24021719	24021721	.	-	0	Parent=hg002_chrY_paternal_526.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	24042356	24095197	.	+	.	ID=hg002_chrY_paternal_527;gene_name=DAZ4;gene_biotype=protein_coding;origin_ID=DAZ4;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.436_0
HG002_chrY	Liftoff	transcript	24042356	24095197	.	+	.	ID=hg002_chrY_paternal_527.1;Parent=hg002_chrY_paternal_527;transcript_biotype=protein_coding;origin_ID=NM_001005375.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_527;gene_name=DAZ4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_527.1;transcript_name=hg002_chrY_paternal_527.1
HG002_chrY	Liftoff	exon	24042356	24042665	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24049267	24049413	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24049688	24049779	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050340	24050391	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050828	24050891	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050981	24051120	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24052521	24052592	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24054964	24055035	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24057354	24057425	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	24059750	24059821	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	24071924	24071995	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	24083845	24083916	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	24084662	24084696	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	24089269	24089367	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	24093341	24095197	.	+	.	Parent=hg002_chrY_paternal_527.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24042663	24042665	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24049267	24049413	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24049688	24049779	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050340	24050391	.	+	1	Parent=hg002_chrY_paternal_527.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050828	24050891	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050981	24051120	.	+	2	Parent=hg002_chrY_paternal_527.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24052521	24052592	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24054964	24055035	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24057354	24057425	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24059750	24059821	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24071924	24071995	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24083845	24083916	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24084662	24084696	.	+	0	Parent=hg002_chrY_paternal_527.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24089269	24089332	.	+	1	Parent=hg002_chrY_paternal_527.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24042356	24095197	.	+	.	ID=hg002_chrY_paternal_527.2;Parent=hg002_chrY_paternal_527;transcript_biotype=protein_coding;origin_ID=NM_020420.4;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_527;gene_name=DAZ4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_527.2;transcript_name=hg002_chrY_paternal_527.2
HG002_chrY	Liftoff	exon	24042356	24042665	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24052521	24052592	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24054964	24055035	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24057354	24057425	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24059750	24059821	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24083845	24083916	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24084662	24084696	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24089269	24089367	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24093341	24095197	.	+	.	Parent=hg002_chrY_paternal_527.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24042663	24042665	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24052521	24052592	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24054964	24055035	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24057354	24057425	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24059750	24059821	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24083845	24083916	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24084662	24084696	.	+	0	Parent=hg002_chrY_paternal_527.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24089269	24089332	.	+	1	Parent=hg002_chrY_paternal_527.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24042455	24095197	.	+	.	ID=hg002_chrY_paternal_527.3;Parent=hg002_chrY_paternal_527;transcript_biotype=protein_coding;origin_ID=NM_001388484.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_527;gene_name=DAZ4;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_527.3;transcript_name=hg002_chrY_paternal_527.3
HG002_chrY	Liftoff	exon	24042455	24042665	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24049267	24049413	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24049688	24049779	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050340	24050391	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050828	24050891	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24050981	24051120	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24052521	24052592	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24054964	24055035	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24057354	24057425	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	24059750	24059821	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	24071924	24071995	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	24074309	24074380	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	24076693	24076764	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	24079077	24079148	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	24081461	24081532	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	24083845	24083916	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	24084662	24084696	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	24089269	24089367	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	24093341	24095197	.	+	.	Parent=hg002_chrY_paternal_527.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24042663	24042665	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24049267	24049413	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24049688	24049779	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050340	24050391	.	+	1	Parent=hg002_chrY_paternal_527.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050828	24050891	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24050981	24051120	.	+	2	Parent=hg002_chrY_paternal_527.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24052521	24052592	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24054964	24055035	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24057354	24057425	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24059750	24059821	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24071924	24071995	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24074309	24074380	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24076693	24076764	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24079077	24079148	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24081461	24081532	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24083845	24083916	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24084662	24084696	.	+	0	Parent=hg002_chrY_paternal_527.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24089269	24089332	.	+	1	Parent=hg002_chrY_paternal_527.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	gene	24114812	24118149	.	+	.	ID=hg002_chrY_paternal_528;gene_name=LOC105377242;gene_biotype=lncRNA;origin_ID=LOC105377242;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.437_0
HG002_chrY	Liftoff	transcript	24114812	24118149	.	+	.	ID=hg002_chrY_paternal_528.1;Parent=hg002_chrY_paternal_528;transcript_biotype=lnc_RNA;origin_ID=XR_938671.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_528;gene_name=LOC105377242;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_528.1;transcript_name=hg002_chrY_paternal_528.1
HG002_chrY	Liftoff	exon	24114812	24114990	.	+	.	Parent=hg002_chrY_paternal_528.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24115653	24115717	.	+	.	Parent=hg002_chrY_paternal_528.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24118049	24118149	.	+	.	Parent=hg002_chrY_paternal_528.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24114812	24118149	.	+	.	ID=hg002_chrY_paternal_528.2;Parent=hg002_chrY_paternal_528;transcript_biotype=lnc_RNA;origin_ID=XR_938672.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_528;gene_name=LOC105377242;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_528.2;transcript_name=hg002_chrY_paternal_528.2
HG002_chrY	Liftoff	exon	24114812	24114990	.	+	.	Parent=hg002_chrY_paternal_528.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24115653	24115690	.	+	.	Parent=hg002_chrY_paternal_528.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24118049	24118149	.	+	.	Parent=hg002_chrY_paternal_528.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	24165345	24166496	.	-	.	ID=hg002_chrY_paternal_529;gene_name=TRIM60P6Y;gene_biotype=pseudogene;origin_ID=TRIM60P6Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.438_0
HG002_chrY	Liftoff	gene	24173373	24178537	.	-	.	ID=hg002_chrY_paternal_530;gene_name=ZNF736P1Y;gene_biotype=pseudogene;origin_ID=ZNF736P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.439_0
HG002_chrY	Liftoff	gene	24197872	24198938	.	-	.	ID=hg002_chrY_paternal_531;gene_name=TRIM60P7Y;gene_biotype=pseudogene;origin_ID=TRIM60P7Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.440_0
HG002_chrY	Liftoff	gene	24206474	24207481	.	-	.	ID=hg002_chrY_paternal_532;gene_name=ZNF736P5Y;gene_biotype=pseudogene;origin_ID=ZNF736P5Y;coverage=0.999;sequence_ID=0.999;extra_copy_number=1;copy_num_ID=REF.chrY.430_1
HG002_chrY	Liftoff	gene	24219069	24240272	.	-	.	ID=hg002_chrY_paternal_533;gene_name=BPY2B;gene_biotype=protein_coding;origin_ID=BPY2B;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.441_0
HG002_chrY	Liftoff	transcript	24219069	24240272	.	-	.	ID=hg002_chrY_paternal_533.1;Parent=hg002_chrY_paternal_533;transcript_biotype=protein_coding;origin_ID=NM_001002760.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_533;gene_name=BPY2B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_533.1;transcript_name=hg002_chrY_paternal_533.1
HG002_chrY	Liftoff	exon	24219069	24219390	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	24219485	24219609	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24226160	24226284	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24226977	24227082	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24229937	24230054	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24232114	24232232	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24236642	24236778	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24239844	24239966	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24240242	24240272	.	-	.	Parent=hg002_chrY_paternal_533.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24226266	24226284	.	-	1	Parent=hg002_chrY_paternal_533.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24226977	24227082	.	-	2	Parent=hg002_chrY_paternal_533.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24229937	24230054	.	-	0	Parent=hg002_chrY_paternal_533.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24232114	24232191	.	-	0	Parent=hg002_chrY_paternal_533.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	24251251	24288050	.	-	.	ID=hg002_chrY_paternal_534;gene_name=TTTY4;gene_biotype=lncRNA;origin_ID=TTTY4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.442_0
HG002_chrY	Liftoff	transcript	24251251	24288050	.	-	.	ID=hg002_chrY_paternal_534.1;Parent=hg002_chrY_paternal_534;transcript_biotype=lnc_RNA;origin_ID=NR_001525.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_534;gene_name=TTTY4;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_534.1;transcript_name=hg002_chrY_paternal_534.1
HG002_chrY	Liftoff	exon	24251251	24252251	.	-	.	Parent=hg002_chrY_paternal_534.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24258902	24259009	.	-	.	Parent=hg002_chrY_paternal_534.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24260814	24260889	.	-	.	Parent=hg002_chrY_paternal_534.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24287890	24288050	.	-	.	Parent=hg002_chrY_paternal_534.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	24356753	24357366	.	+	.	ID=hg002_chrY_paternal_535;gene_name=ZNF736P11Y;gene_biotype=pseudogene;origin_ID=ZNF736P11Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.443_0
HG002_chrY	Liftoff	gene	24362664	24363538	.	+	.	ID=hg002_chrY_paternal_536;gene_name=TRIM60P12Y;gene_biotype=pseudogene;origin_ID=TRIM60P12Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.444_0
HG002_chrY	Liftoff	gene	24371794	24372926	.	-	.	ID=hg002_chrY_paternal_537;gene_name=TTTY17C;gene_biotype=lncRNA;origin_ID=TTTY17C;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.445_0
HG002_chrY	Liftoff	transcript	24371794	24372926	.	-	.	ID=hg002_chrY_paternal_537.1;Parent=hg002_chrY_paternal_537;transcript_biotype=lnc_RNA;origin_ID=NR_002179.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_537;gene_name=TTTY17C;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_537.1;transcript_name=hg002_chrY_paternal_537.1
HG002_chrY	Liftoff	exon	24371794	24371899	.	-	.	Parent=hg002_chrY_paternal_537.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24372867	24372926	.	-	.	Parent=hg002_chrY_paternal_537.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	24425190	24438295	.	-	.	ID=hg002_chrY_paternal_538;gene_name=LOC107987350;gene_biotype=lncRNA;origin_ID=LOC107987350;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.446_0
HG002_chrY	Liftoff	transcript	24425190	24438295	.	-	.	ID=hg002_chrY_paternal_538.1;Parent=hg002_chrY_paternal_538;transcript_biotype=lnc_RNA;origin_ID=XR_001756083.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_538;gene_name=LOC107987350;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_538.1;transcript_name=hg002_chrY_paternal_538.1
HG002_chrY	Liftoff	exon	24425190	24429063	.	-	.	Parent=hg002_chrY_paternal_538.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24429705	24431869	.	-	.	Parent=hg002_chrY_paternal_538.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24437840	24438295	.	-	.	Parent=hg002_chrY_paternal_538.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24425190	24438295	.	-	.	ID=hg002_chrY_paternal_538.2;Parent=hg002_chrY_paternal_538;transcript_biotype=lnc_RNA;origin_ID=XR_001756084.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_538;gene_name=LOC107987350;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_538.2;transcript_name=hg002_chrY_paternal_538.2
HG002_chrY	Liftoff	exon	24425190	24429063	.	-	.	Parent=hg002_chrY_paternal_538.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24429705	24432337	.	-	.	Parent=hg002_chrY_paternal_538.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24437840	24438295	.	-	.	Parent=hg002_chrY_paternal_538.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	24454625	24462189	.	+	.	ID=hg002_chrY_paternal_539;gene_name=RBMY2XP;gene_biotype=pseudogene;origin_ID=RBMY2XP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.447_0
HG002_chrY	Liftoff	gene	24495809	24496350	.	+	.	ID=hg002_chrY_paternal_540;gene_name=RPL41P7;gene_biotype=pseudogene;origin_ID=RPL41P7;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.448_0
HG002_chrY	Liftoff	gene	24527077	24528710	.	-	.	ID=hg002_chrY_paternal_541;gene_name=LOC101928626;gene_biotype=lncRNA;origin_ID=LOC101928626;coverage=1.0;sequence_ID=0.972;extra_copy_number=5;copy_num_ID=REF.chr1.3_5
HG002_chrY	Liftoff	transcript	24527077	24528710	.	-	.	ID=hg002_chrY_paternal_541.1;Parent=hg002_chrY_paternal_541;transcript_biotype=lnc_RNA;origin_ID=NR_125957.1;extra_copy_number=5;gene_id=hg002_chrY_paternal_541;gene_name=LOC101928626;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_541.1;transcript_name=hg002_chrY_paternal_541.1
HG002_chrY	Liftoff	exon	24527077	24527520	.	-	.	Parent=hg002_chrY_paternal_541.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	exon	24527658	24527924	.	-	.	Parent=hg002_chrY_paternal_541.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	24528620	24528710	.	-	.	Parent=hg002_chrY_paternal_541.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	gene	24536592	24547592	.	+	.	ID=hg002_chrY_paternal_542;gene_name=LOC107987240;gene_biotype=lncRNA;origin_ID=LOC107987240;coverage=0.998;sequence_ID=0.976;extra_copy_number=5;copy_num_ID=REF.chr16.2108_5
HG002_chrY	Liftoff	transcript	24536592	24547592	.	+	.	ID=hg002_chrY_paternal_542.1;Parent=hg002_chrY_paternal_542;transcript_biotype=lnc_RNA;origin_ID=XR_001752321.3;extra_copy_number=5;gene_id=hg002_chrY_paternal_542;gene_name=LOC107987240;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_542.1;transcript_name=hg002_chrY_paternal_542.1
HG002_chrY	Liftoff	exon	24536592	24536823	.	+	.	Parent=hg002_chrY_paternal_542.1;exon_number=1;extra_copy_number=5
HG002_chrY	Liftoff	exon	24546619	24546725	.	+	.	Parent=hg002_chrY_paternal_542.1;exon_number=2;extra_copy_number=5
HG002_chrY	Liftoff	exon	24546935	24547592	.	+	.	Parent=hg002_chrY_paternal_542.1;exon_number=3;extra_copy_number=5
HG002_chrY	Liftoff	gene	24566827	24579765	.	-	.	ID=hg002_chrY_paternal_543;gene_name=LINC00266-2P;gene_biotype=pseudogene;origin_ID=LINC00266-2P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.449_0
HG002_chrY	Liftoff	gene	24572653	24575242	.	+	.	ID=hg002_chrY_paternal_544;gene_name=SEPTIN14P22;gene_biotype=pseudogene;origin_ID=SEPTIN14P22;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.450_0
HG002_chrY	Liftoff	gene	24577484	24580977	.	+	.	ID=hg002_chrY_paternal_545;gene_name=CICP1;gene_biotype=pseudogene;origin_ID=CICP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.451_0
HG002_chrY	Liftoff	gene	24580936	24582316	.	-	.	ID=hg002_chrY_paternal_546;gene_name=LINC00265-2P;gene_biotype=pseudogene;origin_ID=LINC00265-2P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.452_0
HG002_chrY	Liftoff	gene	24608441	24609823	.	+	.	ID=hg002_chrY_paternal_547;gene_name=GOLGA6L13P;gene_biotype=pseudogene;origin_ID=GOLGA6L13P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.453_0
HG002_chrY	Liftoff	gene	24610111	24612004	.	-	.	ID=hg002_chrY_paternal_548;gene_name=DNM1P27;gene_biotype=pseudogene;origin_ID=DNM1P27;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.454_0
HG002_chrY	Liftoff	gene	24619306	24625475	.	+	.	ID=hg002_chrY_paternal_549;gene_name=UBE2Q2P4Y;gene_biotype=pseudogene;origin_ID=UBE2Q2P4Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.455_0
HG002_chrY	Liftoff	gene	24643470	24648335	.	+	.	ID=hg002_chrY_paternal_550;gene_name=GOLGA2P2Y;gene_biotype=transcribed_pseudogene;origin_ID=GOLGA2P2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.456_0
HG002_chrY	Liftoff	transcript	24643470	24648335	.	+	.	ID=hg002_chrY_paternal_550.1;Parent=hg002_chrY_paternal_550;transcript_biotype=transcript;origin_ID=NR_001555.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_550;gene_name=GOLGA2P2Y;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_550.1;transcript_name=hg002_chrY_paternal_550.1
HG002_chrY	Liftoff	exon	24643470	24643512	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24643699	24643777	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24644898	24645249	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	24645546	24645603	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	24646960	24647034	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	24647455	24647543	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	24647799	24647987	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	24648077	24648169	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	24648252	24648335	.	+	.	Parent=hg002_chrY_paternal_550.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	24647086	24647344	.	+	.	ID=hg002_chrY_paternal_551;gene_name=RN7SL818P;gene_biotype=pseudogene;origin_ID=RN7SL818P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.457_0
HG002_chrY	Liftoff	gene	24650334	24651864	.	-	.	ID=hg002_chrY_paternal_552;gene_name=LOC102724034;gene_biotype=lncRNA;origin_ID=LOC102724034;coverage=1.0;sequence_ID=0.965;extra_copy_number=1;copy_num_ID=REF.chr15.1533_1
HG002_chrY	Liftoff	transcript	24650334	24651864	.	-	.	ID=hg002_chrY_paternal_552.1;Parent=hg002_chrY_paternal_552;transcript_biotype=lnc_RNA;origin_ID=NR_120378.1;extra_copy_number=1;gene_id=hg002_chrY_paternal_552;gene_name=LOC102724034;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_552.1;transcript_name=hg002_chrY_paternal_552.1
HG002_chrY	Liftoff	exon	24650334	24650757	.	-	.	Parent=hg002_chrY_paternal_552.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	24651026	24651150	.	-	.	Parent=hg002_chrY_paternal_552.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	24651839	24651864	.	-	.	Parent=hg002_chrY_paternal_552.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	24652229	24652834	.	+	.	ID=hg002_chrY_paternal_553;gene_name=CHRFAM7AP2;gene_biotype=pseudogene;origin_ID=CHRFAM7AP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.458_0
HG002_chrY	Liftoff	gene	24653699	24661729	.	+	.	ID=hg002_chrY_paternal_554;gene_name=UBE2Q2P6;gene_biotype=pseudogene;origin_ID=UBE2Q2P6;coverage=0.997;sequence_ID=0.965;extra_copy_number=1;copy_num_ID=REF.chr15.1534_1
HG002_chrY	Liftoff	gene	24666421	24671788	.	+	.	ID=hg002_chrY_paternal_555;gene_name=CSPG4P4Y;gene_biotype=pseudogene;origin_ID=CSPG4P4Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.459_0
HG002_chrY	Liftoff	gene	24671065	24674862	.	+	.	ID=hg002_chrY_paternal_556;gene_name=CSPG4P1Y;gene_biotype=transcribed_pseudogene;origin_ID=CSPG4P1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.460_0
HG002_chrY	Liftoff	transcript	24671065	24674862	.	+	.	ID=hg002_chrY_paternal_556.1;Parent=hg002_chrY_paternal_556;transcript_biotype=transcript;origin_ID=NR_001554.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_556;gene_name=CSPG4P1Y;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_556.1;transcript_name=hg002_chrY_paternal_556.1
HG002_chrY	Liftoff	exon	24671065	24671787	.	+	.	Parent=hg002_chrY_paternal_556.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24674791	24674862	.	+	.	Parent=hg002_chrY_paternal_556.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	24674685	24675384	.	+	.	ID=hg002_chrY_paternal_557;gene_name=DNM1P48;gene_biotype=pseudogene;origin_ID=DNM1P48;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.461_0
HG002_chrY	Liftoff	gene	24675664	24680763	.	+	.	ID=hg002_chrY_paternal_558;gene_name=DNM1P24;gene_biotype=pseudogene;origin_ID=DNM1P24;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.462_0
HG002_chrY	Liftoff	gene	24680835	24683760	.	-	.	ID=hg002_chrY_paternal_559;gene_name=GOLGA6L14P;gene_biotype=pseudogene;origin_ID=GOLGA6L14P;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.526_1
HG002_chrY	Liftoff	gene	24685637	24688395	.	-	.	ID=hg002_chrY_paternal_560;gene_name=GOLGA6L11P;gene_biotype=pseudogene;origin_ID=GOLGA6L11P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.463_0
HG002_chrY	Liftoff	gene	24751055	24754502	.	-	.	ID=hg002_chrY_paternal_561;gene_name=CDY18P;gene_biotype=pseudogene;origin_ID=CDY18P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.464_0
HG002_chrY	Liftoff	gene	24767938	24776579	.	+	.	ID=hg002_chrY_paternal_562;gene_name=USP9YP31;gene_biotype=pseudogene;origin_ID=USP9YP31;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.465_0
HG002_chrY	Liftoff	gene	24778471	24780484	.	-	.	ID=hg002_chrY_paternal_563;gene_name=USP9YP35;gene_biotype=pseudogene;origin_ID=USP9YP35;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.466_0
HG002_chrY	Liftoff	gene	24806371	24808507	.	+	.	ID=hg002_chrY_paternal_564;gene_name=CDY17P;gene_biotype=pseudogene;origin_ID=CDY17P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.467_0
HG002_chrY	Liftoff	gene	24810265	24813664	.	+	.	ID=hg002_chrY_paternal_565;gene_name=CDY1B;gene_biotype=protein_coding;origin_ID=CDY1B;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.468_0
HG002_chrY	Liftoff	transcript	24810265	24812491	.	+	.	ID=hg002_chrY_paternal_565.1;Parent=hg002_chrY_paternal_565;transcript_biotype=protein_coding;origin_ID=NM_001003894.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_565;gene_name=CDY1B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_565.1;transcript_name=hg002_chrY_paternal_565.1
HG002_chrY	Liftoff	exon	24810265	24812491	.	+	.	Parent=hg002_chrY_paternal_565.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24810596	24812218	.	+	0	Parent=hg002_chrY_paternal_565.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24810270	24813055	.	+	.	ID=hg002_chrY_paternal_565.2;Parent=hg002_chrY_paternal_565;transcript_biotype=protein_coding;origin_ID=NM_001003895.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_565;gene_name=CDY1B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_565.2;transcript_name=hg002_chrY_paternal_565.2
HG002_chrY	Liftoff	exon	24810270	24812187	.	+	.	Parent=hg002_chrY_paternal_565.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24812608	24813055	.	+	.	Parent=hg002_chrY_paternal_565.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24810596	24812187	.	+	0	Parent=hg002_chrY_paternal_565.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24812608	24812680	.	+	1	Parent=hg002_chrY_paternal_565.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24810270	24813664	.	+	.	ID=hg002_chrY_paternal_565.3;Parent=hg002_chrY_paternal_565;transcript_biotype=transcript;origin_ID=XR_938655.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_565;gene_name=CDY1B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_565.3;transcript_name=hg002_chrY_paternal_565.3
HG002_chrY	Liftoff	exon	24810270	24812187	.	+	.	Parent=hg002_chrY_paternal_565.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24812608	24812807	.	+	.	Parent=hg002_chrY_paternal_565.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24813583	24813664	.	+	.	Parent=hg002_chrY_paternal_565.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	24810278	24813055	.	+	.	ID=hg002_chrY_paternal_565.4;Parent=hg002_chrY_paternal_565;transcript_biotype=protein_coding;origin_ID=XM_011531484.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_565;gene_name=CDY1B;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_565.4;transcript_name=hg002_chrY_paternal_565.4
HG002_chrY	Liftoff	exon	24810278	24811987	.	+	.	Parent=hg002_chrY_paternal_565.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24812608	24813055	.	+	.	Parent=hg002_chrY_paternal_565.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24810596	24811987	.	+	0	Parent=hg002_chrY_paternal_565.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	24812608	24812628	.	+	0	Parent=hg002_chrY_paternal_565.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	24851063	24851389	.	+	.	ID=hg002_chrY_paternal_566;gene_name=ELOCP10;gene_biotype=pseudogene;origin_ID=ELOCP10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.469_0
HG002_chrY	Liftoff	gene	24863158	24885595	.	-	.	ID=hg002_chrY_paternal_567;gene_name=OFD1P13Y;gene_biotype=pseudogene;origin_ID=OFD1P13Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.470_0
HG002_chrY	Liftoff	gene	24887498	24895264	.	+	.	ID=hg002_chrY_paternal_568;gene_name=TRAPPC2P5;gene_biotype=pseudogene;origin_ID=TRAPPC2P5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.471_0
HG002_chrY	Liftoff	gene	24898080	24901726	.	-	.	ID=hg002_chrY_paternal_569;gene_name=RAB9AP2;gene_biotype=pseudogene;origin_ID=RAB9AP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.472_0
HG002_chrY	Liftoff	gene	24911163	24911321	.	+	.	ID=hg002_chrY_paternal_570;gene_name=USP9YP30;gene_biotype=pseudogene;origin_ID=USP9YP30;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.473_0
HG002_chrY	Liftoff	gene	24911515	24911668	.	+	.	ID=hg002_chrY_paternal_571;gene_name=RNU1-107P;gene_biotype=pseudogene;origin_ID=RNU1-107P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.474_0
HG002_chrY	Liftoff	gene	24916663	24921558	.	+	.	ID=hg002_chrY_paternal_572;gene_name=TTTY3;gene_biotype=lncRNA;origin_ID=TTTY3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.475_0
HG002_chrY	Liftoff	transcript	24916663	24921558	.	+	.	ID=hg002_chrY_paternal_572.1;Parent=hg002_chrY_paternal_572;transcript_biotype=lnc_RNA;origin_ID=NR_001524.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_572;gene_name=TTTY3;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_572.1;transcript_name=hg002_chrY_paternal_572.1
HG002_chrY	Liftoff	exon	24916663	24916766	.	+	.	Parent=hg002_chrY_paternal_572.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	24918965	24919099	.	+	.	Parent=hg002_chrY_paternal_572.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	24921454	24921558	.	+	.	Parent=hg002_chrY_paternal_572.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	24918183	24921622	.	-	.	ID=hg002_chrY_paternal_573;gene_name=USP9YP11;gene_biotype=pseudogene;origin_ID=USP9YP11;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.476_0
HG002_chrY	Liftoff	gene	24937030	24938159	.	-	.	ID=hg002_chrY_paternal_574;gene_name=USP9YP19;gene_biotype=pseudogene;origin_ID=USP9YP19;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.477_0
HG002_chrY	Liftoff	gene	24938159	24938377	.	-	.	ID=hg002_chrY_paternal_575;gene_name=USP9YP13;gene_biotype=pseudogene;origin_ID=USP9YP13;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.478_0
HG002_chrY	Liftoff	gene	24939788	24941586	.	+	.	ID=hg002_chrY_paternal_576;gene_name=XKRYP4;gene_biotype=pseudogene;origin_ID=XKRYP4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.479_0
HG002_chrY	Liftoff	gene	24995479	24996809	.	+	.	ID=hg002_chrY_paternal_577;gene_name=CDY21P;gene_biotype=pseudogene;origin_ID=CDY21P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.480_0
HG002_chrY	Liftoff	gene	25000767	25004008	.	+	.	ID=hg002_chrY_paternal_578;gene_name=CDY22P;gene_biotype=pseudogene;origin_ID=CDY22P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.481_0
HG002_chrY	Liftoff	gene	25049122	25049447	.	+	.	ID=hg002_chrY_paternal_579;gene_name=ELOCP17;gene_biotype=pseudogene;origin_ID=ELOCP17;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.482_0
HG002_chrY	Liftoff	gene	25060018	25076184	.	-	.	ID=hg002_chrY_paternal_580;gene_name=OFD1P14Y;gene_biotype=pseudogene;origin_ID=OFD1P14Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.483_0
HG002_chrY	Liftoff	gene	25085410	25085784	.	-	.	ID=hg002_chrY_paternal_581;gene_name=OFD1P18Y;gene_biotype=pseudogene;origin_ID=OFD1P18Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.484_0
HG002_chrY	Liftoff	gene	25092603	25103418	.	+	.	ID=hg002_chrY_paternal_582;gene_name=TRAPPC2P4;gene_biotype=pseudogene;origin_ID=TRAPPC2P4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.485_0
HG002_chrY	Liftoff	gene	25106535	25107101	.	-	.	ID=hg002_chrY_paternal_583;gene_name=RAB9AP3;gene_biotype=pseudogene;origin_ID=RAB9AP3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.486_0
HG002_chrY	Liftoff	gene	25111594	25118035	.	+	.	ID=hg002_chrY_paternal_584;gene_name=USP9YP20;gene_biotype=pseudogene;origin_ID=USP9YP20;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.487_0
HG002_chrY	Liftoff	gene	25117188	25117351	.	+	.	ID=hg002_chrY_paternal_585;gene_name=RNU1-40P;gene_biotype=pseudogene;origin_ID=RNU1-40P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.488_0
HG002_chrY	Liftoff	gene	25122042	25124090	.	-	.	ID=hg002_chrY_paternal_586;gene_name=USP9YP21;gene_biotype=pseudogene;origin_ID=USP9YP21;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.489_0
HG002_chrY	Liftoff	gene	25140799	25142596	.	+	.	ID=hg002_chrY_paternal_587;gene_name=XKRYP6;gene_biotype=pseudogene;origin_ID=XKRYP6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.490_0
HG002_chrY	Liftoff	gene	25163603	25176945	.	+	.	ID=hg002_chrY_paternal_588;gene_name=PRYP3;gene_biotype=pseudogene;origin_ID=PRYP3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.491_0
HG002_chrY	Liftoff	gene	25179450	25179781	.	-	.	ID=hg002_chrY_paternal_589;gene_name=ELOCP16;gene_biotype=pseudogene;origin_ID=ELOCP16;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.492_0
HG002_chrY	Liftoff	gene	25182800	25184007	.	-	.	ID=hg002_chrY_paternal_590;gene_name=CDY14P;gene_biotype=pseudogene;origin_ID=CDY14P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.493_0
HG002_chrY	Liftoff	gene	25190465	25198821	.	+	.	ID=hg002_chrY_paternal_591;gene_name=USP9YP18;gene_biotype=pseudogene;origin_ID=USP9YP18;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.494_0
HG002_chrY	Liftoff	gene	25199646	25200448	.	+	.	ID=hg002_chrY_paternal_592;gene_name=HSFY7P;gene_biotype=pseudogene;origin_ID=HSFY7P;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.419_1
HG002_chrY	Liftoff	gene	25217514	25220638	.	-	.	ID=hg002_chrY_paternal_593;gene_name=LOC107987349;gene_biotype=lncRNA;origin_ID=LOC107987349;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.495_0
HG002_chrY	Liftoff	transcript	25217514	25220638	.	-	.	ID=hg002_chrY_paternal_593.1;Parent=hg002_chrY_paternal_593;transcript_biotype=lnc_RNA;origin_ID=XR_001756082.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_593;gene_name=LOC107987349;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_593.1;transcript_name=hg002_chrY_paternal_593.1
HG002_chrY	Liftoff	exon	25217514	25218842	.	-	.	Parent=hg002_chrY_paternal_593.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25220378	25220438	.	-	.	Parent=hg002_chrY_paternal_593.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25220556	25220638	.	-	.	Parent=hg002_chrY_paternal_593.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25257877	25276803	.	-	.	ID=hg002_chrY_paternal_594;gene_name=OFD1P15Y;gene_biotype=pseudogene;origin_ID=OFD1P15Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.496_0
HG002_chrY	Liftoff	gene	25309792	25321921	.	+	.	ID=hg002_chrY_paternal_595;gene_name=RBMY2DP;gene_biotype=pseudogene;origin_ID=RBMY2DP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.497_0
HG002_chrY	Liftoff	gene	25382069	25423570	.	-	.	ID=hg002_chrY_paternal_596;gene_name=REREP1Y;gene_biotype=transcribed_pseudogene;origin_ID=REREP1Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.498_0
HG002_chrY	Liftoff	transcript	25382069	25423570	.	-	.	ID=hg002_chrY_paternal_596.1;Parent=hg002_chrY_paternal_596;transcript_biotype=transcript;origin_ID=XR_938667.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_596;gene_name=REREP1Y;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_596.1;transcript_name=hg002_chrY_paternal_596.1
HG002_chrY	Liftoff	exon	25382069	25386658	.	-	.	Parent=hg002_chrY_paternal_596.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25396276	25396348	.	-	.	Parent=hg002_chrY_paternal_596.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25423168	25423570	.	-	.	Parent=hg002_chrY_paternal_596.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25435574	25435711	.	+	.	ID=hg002_chrY_paternal_597;gene_name=LOC124900506;gene_biotype=snoRNA;origin_ID=LOC124900506;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.499_0
HG002_chrY	Liftoff	transcript	25435574	25435711	.	+	.	ID=hg002_chrY_paternal_597.1;Parent=hg002_chrY_paternal_597;transcript_biotype=snoRNA;origin_ID=XR_007068484.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_597;gene_name=LOC124900506;gene_biotype=snoRNA;transcript_id=hg002_chrY_paternal_597.1;transcript_name=hg002_chrY_paternal_597.1
HG002_chrY	Liftoff	exon	25435574	25435711	.	+	.	Parent=hg002_chrY_paternal_597.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25466012	25479427	.	-	.	ID=hg002_chrY_paternal_598;gene_name=PPP1R12BP2;gene_biotype=pseudogene;origin_ID=PPP1R12BP2;coverage=1.0;sequence_ID=0.999;extra_copy_number=1;copy_num_ID=REF.chrY.562_1
HG002_chrY	Liftoff	gene	25544465	25547806	.	-	.	ID=hg002_chrY_paternal_599;gene_name=LOC105377238;gene_biotype=lncRNA;origin_ID=LOC105377238;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.500_0
HG002_chrY	Liftoff	transcript	25544465	25547806	.	-	.	ID=hg002_chrY_paternal_599.1;Parent=hg002_chrY_paternal_599;transcript_biotype=lnc_RNA;origin_ID=XR_938663.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_599;gene_name=LOC105377238;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_599.1;transcript_name=hg002_chrY_paternal_599.1
HG002_chrY	Liftoff	exon	25544465	25544565	.	-	.	Parent=hg002_chrY_paternal_599.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25546897	25546961	.	-	.	Parent=hg002_chrY_paternal_599.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25547624	25547806	.	-	.	Parent=hg002_chrY_paternal_599.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25544465	25547806	.	-	.	ID=hg002_chrY_paternal_599.2;Parent=hg002_chrY_paternal_599;transcript_biotype=lnc_RNA;origin_ID=XR_938664.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_599;gene_name=LOC105377238;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_599.2;transcript_name=hg002_chrY_paternal_599.2
HG002_chrY	Liftoff	exon	25544465	25544565	.	-	.	Parent=hg002_chrY_paternal_599.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25546924	25546961	.	-	.	Parent=hg002_chrY_paternal_599.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25547624	25547806	.	-	.	Parent=hg002_chrY_paternal_599.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25567424	25637167	.	-	.	ID=hg002_chrY_paternal_600;gene_name=DAZ1;gene_biotype=protein_coding;origin_ID=DAZ1;coverage=1.0;sequence_ID=1.0;valid_ORFs=2;extra_copy_number=0;copy_num_ID=REF.chrY.501_0
HG002_chrY	Liftoff	transcript	25567424	25637081	.	-	.	ID=hg002_chrY_paternal_600.1;Parent=hg002_chrY_paternal_600;transcript_biotype=protein_coding;origin_ID=NM_004081.7;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_600;gene_name=DAZ1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_600.1;transcript_name=hg002_chrY_paternal_600.1
HG002_chrY	Liftoff	exon	25567424	25569280	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=28;extra_copy_number=0
HG002_chrY	Liftoff	exon	25573244	25573342	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	exon	25577916	25577950	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	exon	25578695	25578766	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	exon	25581080	25581151	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	exon	25590866	25590937	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	exon	25593243	25593314	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	exon	25595639	25595710	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	25598025	25598096	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25600421	25600492	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25602812	25602883	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25605257	25605328	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25606729	25606868	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25606958	25607021	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25607458	25607509	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25608070	25608161	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25608436	25608582	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25617569	25617708	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25617798	25617861	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25618298	25618349	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25618910	25619001	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25619276	25619422	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25628417	25628556	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25628646	25628709	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25629146	25629197	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25629758	25629849	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25630124	25630270	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25636871	25637081	.	-	.	Parent=hg002_chrY_paternal_600.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25573279	25573342	.	-	1	Parent=hg002_chrY_paternal_600.1;exon_number=27;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25577916	25577950	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=26;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25578695	25578766	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=25;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25581080	25581151	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=24;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25590866	25590937	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=23;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25593243	25593314	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25595639	25595710	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25598025	25598096	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25600421	25600492	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25602812	25602883	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25605257	25605328	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25606729	25606868	.	-	2	Parent=hg002_chrY_paternal_600.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25606958	25607021	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25607458	25607509	.	-	1	Parent=hg002_chrY_paternal_600.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25608070	25608161	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25608436	25608582	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25617569	25617708	.	-	2	Parent=hg002_chrY_paternal_600.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25617798	25617861	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25618298	25618349	.	-	1	Parent=hg002_chrY_paternal_600.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25618910	25619001	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25619276	25619422	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25628417	25628556	.	-	2	Parent=hg002_chrY_paternal_600.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25628646	25628709	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25629146	25629197	.	-	1	Parent=hg002_chrY_paternal_600.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25629758	25629849	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25630124	25630270	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25636871	25636873	.	-	0	Parent=hg002_chrY_paternal_600.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25567424	25637167	.	-	.	ID=hg002_chrY_paternal_600.2;Parent=hg002_chrY_paternal_600;transcript_biotype=protein_coding;origin_ID=NM_001388496.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_600;gene_name=DAZ1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_600.2;transcript_name=hg002_chrY_paternal_600.2
HG002_chrY	Liftoff	exon	25567424	25569280	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25573244	25573342	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25577916	25577950	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25578695	25578766	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25590866	25590937	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25593243	25593314	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25595639	25595710	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25598025	25598096	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25600421	25600492	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25602812	25602883	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25605257	25605328	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25628417	25628556	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25628646	25628709	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25629146	25629197	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25629758	25629849	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25630124	25630270	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25636871	25637167	.	-	.	Parent=hg002_chrY_paternal_600.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25573279	25573342	.	-	1	Parent=hg002_chrY_paternal_600.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25577916	25577950	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25578695	25578766	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25590866	25590937	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25593243	25593314	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25595639	25595710	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25598025	25598096	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25600421	25600492	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25602812	25602883	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25605257	25605328	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25628417	25628556	.	-	2	Parent=hg002_chrY_paternal_600.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25628646	25628709	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25629146	25629197	.	-	1	Parent=hg002_chrY_paternal_600.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25629758	25629849	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25630124	25630270	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25636871	25636873	.	-	0	Parent=hg002_chrY_paternal_600.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25657530	25715110	.	+	.	ID=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;origin_ID=DAZ2;coverage=1.0;sequence_ID=1.0;valid_ORFs=7;extra_copy_number=0;copy_num_ID=REF.chrY.502_0
HG002_chrY	Liftoff	transcript	25657530	25715110	.	+	.	ID=hg002_chrY_paternal_601.1;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001005785.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.1;transcript_name=hg002_chrY_paternal_601.1
HG002_chrY	Liftoff	exon	25657530	25657816	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25701383	25701454	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.1;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25701383	25701454	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.1;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.1;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657530	25715110	.	+	.	ID=hg002_chrY_paternal_601.2;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001005786.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.2;transcript_name=hg002_chrY_paternal_601.2
HG002_chrY	Liftoff	exon	25657530	25657816	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.2;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.2;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.2;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657530	25715110	.	+	.	ID=hg002_chrY_paternal_601.3;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_020363.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.3;transcript_name=hg002_chrY_paternal_601.3
HG002_chrY	Liftoff	exon	25657530	25657816	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25682057	25682128	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25701383	25701454	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.3;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25682057	25682128	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25701383	25701454	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.3;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.3;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657606	25715110	.	+	.	ID=hg002_chrY_paternal_601.4;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001388493.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.4;transcript_name=hg002_chrY_paternal_601.4
HG002_chrY	Liftoff	exon	25657606	25657816	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25682057	25682128	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25701383	25701454	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.4;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25682057	25682128	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25701383	25701454	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.4;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.4;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657606	25715110	.	+	.	ID=hg002_chrY_paternal_601.5;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001388494.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.5;transcript_name=hg002_chrY_paternal_601.5
HG002_chrY	Liftoff	exon	25657606	25657816	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25679680	25679751	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25682057	25682128	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.5;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25679680	25679751	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25682057	25682128	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.5;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.5;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657606	25715110	.	+	.	ID=hg002_chrY_paternal_601.6;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001388495.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.6;transcript_name=hg002_chrY_paternal_601.6
HG002_chrY	Liftoff	exon	25657606	25657816	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25679680	25679751	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25682057	25682128	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25701383	25701454	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.6;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25679680	25679751	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25682057	25682128	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25701383	25701454	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.6;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.6;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25657606	25715110	.	+	.	ID=hg002_chrY_paternal_601.7;Parent=hg002_chrY_paternal_601;transcript_biotype=protein_coding;origin_ID=NM_001389303.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_601;gene_name=DAZ2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_601.7;transcript_name=hg002_chrY_paternal_601.7
HG002_chrY	Liftoff	exon	25657606	25657816	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664417	25664563	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25664838	25664929	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665490	25665541	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25665978	25666041	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25666131	25666270	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25667671	25667742	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25670114	25670185	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25672505	25672576	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25674901	25674972	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	25677284	25677355	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	exon	25679680	25679751	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	exon	25682057	25682128	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	exon	25691846	25691917	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	exon	25694230	25694301	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	exon	25696614	25696685	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	exon	25698999	25699070	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	exon	25701383	25701454	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	exon	25703768	25703839	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	exon	25704584	25704618	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	exon	25709192	25709290	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	exon	25713254	25715110	.	+	.	Parent=hg002_chrY_paternal_601.7;exon_number=22;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25657814	25657816	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664417	25664563	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25664838	25664929	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665490	25665541	.	+	1	Parent=hg002_chrY_paternal_601.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25665978	25666041	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25666131	25666270	.	+	2	Parent=hg002_chrY_paternal_601.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25667671	25667742	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25670114	25670185	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25672505	25672576	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25674901	25674972	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25677284	25677355	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25679680	25679751	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=12;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25682057	25682128	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=13;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25691846	25691917	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=14;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25694230	25694301	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=15;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25696614	25696685	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=16;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25698999	25699070	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=17;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25701383	25701454	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=18;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25703768	25703839	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=19;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25704584	25704618	.	+	0	Parent=hg002_chrY_paternal_601.7;exon_number=20;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25709192	25709255	.	+	1	Parent=hg002_chrY_paternal_601.7;exon_number=21;extra_copy_number=0
HG002_chrY	Liftoff	gene	25734730	25738067	.	+	.	ID=hg002_chrY_paternal_602;gene_name=LOC105377239;gene_biotype=lncRNA;origin_ID=LOC105377239;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.503_0
HG002_chrY	Liftoff	transcript	25734730	25738067	.	+	.	ID=hg002_chrY_paternal_602.1;Parent=hg002_chrY_paternal_602;transcript_biotype=lnc_RNA;origin_ID=XR_938665.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_602;gene_name=LOC105377239;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_602.1;transcript_name=hg002_chrY_paternal_602.1
HG002_chrY	Liftoff	exon	25734730	25734908	.	+	.	Parent=hg002_chrY_paternal_602.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25735571	25735635	.	+	.	Parent=hg002_chrY_paternal_602.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25737967	25738067	.	+	.	Parent=hg002_chrY_paternal_602.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	transcript	25734730	25738067	.	+	.	ID=hg002_chrY_paternal_602.2;Parent=hg002_chrY_paternal_602;transcript_biotype=lnc_RNA;origin_ID=XR_938666.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_602;gene_name=LOC105377239;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_602.2;transcript_name=hg002_chrY_paternal_602.2
HG002_chrY	Liftoff	exon	25734730	25734908	.	+	.	Parent=hg002_chrY_paternal_602.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	25735571	25735608	.	+	.	Parent=hg002_chrY_paternal_602.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25737967	25738067	.	+	.	Parent=hg002_chrY_paternal_602.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	25785267	25786418	.	-	.	ID=hg002_chrY_paternal_603;gene_name=TRIM60P11Y;gene_biotype=pseudogene;origin_ID=TRIM60P11Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.504_0
HG002_chrY	Liftoff	gene	25793355	25798474	.	-	.	ID=hg002_chrY_paternal_604;gene_name=ZNF736P2Y;gene_biotype=pseudogene;origin_ID=ZNF736P2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.505_0
HG002_chrY	Liftoff	gene	25817809	25818875	.	-	.	ID=hg002_chrY_paternal_605;gene_name=TRIM60P8Y;gene_biotype=pseudogene;origin_ID=TRIM60P8Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.506_0
HG002_chrY	Liftoff	gene	25826408	25827415	.	-	.	ID=hg002_chrY_paternal_606;gene_name=ZNF736P5Y;gene_biotype=pseudogene;origin_ID=ZNF736P5Y;coverage=0.999;sequence_ID=0.998;extra_copy_number=2;copy_num_ID=REF.chrY.430_2
HG002_chrY	Liftoff	gene	25839004	25860207	.	-	.	ID=hg002_chrY_paternal_607;gene_name=BPY2;gene_biotype=protein_coding;origin_ID=BPY2;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.507_0
HG002_chrY	Liftoff	transcript	25839004	25860207	.	-	.	ID=hg002_chrY_paternal_607.1;Parent=hg002_chrY_paternal_607;transcript_biotype=protein_coding;origin_ID=NM_004678.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_607;gene_name=BPY2;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_607.1;transcript_name=hg002_chrY_paternal_607.1
HG002_chrY	Liftoff	exon	25839004	25839325	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	25839420	25839544	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	25846095	25846219	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	25846912	25847017	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	25849872	25849989	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	25852049	25852167	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25856577	25856713	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25859779	25859901	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25860177	25860207	.	-	.	Parent=hg002_chrY_paternal_607.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25846201	25846219	.	-	1	Parent=hg002_chrY_paternal_607.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25846912	25847017	.	-	2	Parent=hg002_chrY_paternal_607.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25849872	25849989	.	-	0	Parent=hg002_chrY_paternal_607.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	25852049	25852126	.	-	0	Parent=hg002_chrY_paternal_607.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	25871186	25908005	.	-	.	ID=hg002_chrY_paternal_608;gene_name=TTTY4B;gene_biotype=lncRNA;origin_ID=TTTY4B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.508_0
HG002_chrY	Liftoff	transcript	25871186	25908005	.	-	.	ID=hg002_chrY_paternal_608.1;Parent=hg002_chrY_paternal_608;transcript_biotype=lnc_RNA;origin_ID=NR_002178.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_608;gene_name=TTTY4B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_608.1;transcript_name=hg002_chrY_paternal_608.1
HG002_chrY	Liftoff	exon	25871186	25872186	.	-	.	Parent=hg002_chrY_paternal_608.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	25878855	25878962	.	-	.	Parent=hg002_chrY_paternal_608.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	25880767	25880842	.	-	.	Parent=hg002_chrY_paternal_608.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25907845	25908005	.	-	.	Parent=hg002_chrY_paternal_608.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	25977326	25978307	.	+	.	ID=hg002_chrY_paternal_609;gene_name=ZNF736P4Y;gene_biotype=pseudogene;origin_ID=ZNF736P4Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.509_0
HG002_chrY	Liftoff	gene	25982625	25983489	.	+	.	ID=hg002_chrY_paternal_610;gene_name=TRIM60P4Y;gene_biotype=pseudogene;origin_ID=TRIM60P4Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.510_0
HG002_chrY	Liftoff	gene	25991758	25992889	.	-	.	ID=hg002_chrY_paternal_611;gene_name=TTTY17B;gene_biotype=lncRNA;origin_ID=TTTY17B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.511_0
HG002_chrY	Liftoff	transcript	25991758	25992889	.	-	.	ID=hg002_chrY_paternal_611.1;Parent=hg002_chrY_paternal_611;transcript_biotype=lnc_RNA;origin_ID=NR_002180.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_611;gene_name=TTTY17B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_611.1;transcript_name=hg002_chrY_paternal_611.1
HG002_chrY	Liftoff	exon	25991758	25991863	.	-	.	Parent=hg002_chrY_paternal_611.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	25992830	25992889	.	-	.	Parent=hg002_chrY_paternal_611.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	26045158	26058263	.	-	.	ID=hg002_chrY_paternal_612;gene_name=LOC107987350;gene_biotype=lncRNA;origin_ID=LOC107987350;coverage=1.0;sequence_ID=0.998;extra_copy_number=1;copy_num_ID=REF.chrY.446_1
HG002_chrY	Liftoff	transcript	26045158	26058263	.	-	.	ID=hg002_chrY_paternal_612.1;Parent=hg002_chrY_paternal_612;transcript_biotype=lnc_RNA;origin_ID=XR_001756083.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_612;gene_name=LOC107987350;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_612.1;transcript_name=hg002_chrY_paternal_612.1
HG002_chrY	Liftoff	exon	26045158	26049031	.	-	.	Parent=hg002_chrY_paternal_612.1;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	26049673	26051837	.	-	.	Parent=hg002_chrY_paternal_612.1;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	26057808	26058263	.	-	.	Parent=hg002_chrY_paternal_612.1;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	transcript	26045158	26058263	.	-	.	ID=hg002_chrY_paternal_612.2;Parent=hg002_chrY_paternal_612;transcript_biotype=lnc_RNA;origin_ID=XR_001756084.2;extra_copy_number=1;gene_id=hg002_chrY_paternal_612;gene_name=LOC107987350;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_612.2;transcript_name=hg002_chrY_paternal_612.2
HG002_chrY	Liftoff	exon	26045158	26049031	.	-	.	Parent=hg002_chrY_paternal_612.2;exon_number=3;extra_copy_number=1
HG002_chrY	Liftoff	exon	26049673	26052305	.	-	.	Parent=hg002_chrY_paternal_612.2;exon_number=2;extra_copy_number=1
HG002_chrY	Liftoff	exon	26057808	26058263	.	-	.	Parent=hg002_chrY_paternal_612.2;exon_number=1;extra_copy_number=1
HG002_chrY	Liftoff	gene	26074592	26082159	.	+	.	ID=hg002_chrY_paternal_613;gene_name=RBMY2YP;gene_biotype=pseudogene;origin_ID=RBMY2YP;coverage=1.0;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.512_0
HG002_chrY	Liftoff	gene	26115780	26116322	.	+	.	ID=hg002_chrY_paternal_614;gene_name=RPL41P6;gene_biotype=pseudogene;origin_ID=RPL41P6;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.513_0
HG002_chrY	Liftoff	gene	26147024	26148657	.	-	.	ID=hg002_chrY_paternal_615;gene_name=LOC101928626;gene_biotype=lncRNA;origin_ID=LOC101928626;coverage=1.0;sequence_ID=0.972;extra_copy_number=4;copy_num_ID=REF.chr1.3_4
HG002_chrY	Liftoff	transcript	26147024	26148657	.	-	.	ID=hg002_chrY_paternal_615.1;Parent=hg002_chrY_paternal_615;transcript_biotype=lnc_RNA;origin_ID=NR_125957.1;extra_copy_number=4;gene_id=hg002_chrY_paternal_615;gene_name=LOC101928626;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_615.1;transcript_name=hg002_chrY_paternal_615.1
HG002_chrY	Liftoff	exon	26147024	26147467	.	-	.	Parent=hg002_chrY_paternal_615.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	exon	26147605	26147871	.	-	.	Parent=hg002_chrY_paternal_615.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	26148567	26148657	.	-	.	Parent=hg002_chrY_paternal_615.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	gene	26156538	26167527	.	+	.	ID=hg002_chrY_paternal_616;gene_name=LOC107987240;gene_biotype=lncRNA;origin_ID=LOC107987240;coverage=0.998;sequence_ID=0.976;extra_copy_number=4;copy_num_ID=REF.chr16.2108_4
HG002_chrY	Liftoff	transcript	26156538	26167527	.	+	.	ID=hg002_chrY_paternal_616.1;Parent=hg002_chrY_paternal_616;transcript_biotype=lnc_RNA;origin_ID=XR_001752321.3;extra_copy_number=4;gene_id=hg002_chrY_paternal_616;gene_name=LOC107987240;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_616.1;transcript_name=hg002_chrY_paternal_616.1
HG002_chrY	Liftoff	exon	26156538	26156769	.	+	.	Parent=hg002_chrY_paternal_616.1;exon_number=1;extra_copy_number=4
HG002_chrY	Liftoff	exon	26166554	26166660	.	+	.	Parent=hg002_chrY_paternal_616.1;exon_number=2;extra_copy_number=4
HG002_chrY	Liftoff	exon	26166870	26167527	.	+	.	Parent=hg002_chrY_paternal_616.1;exon_number=3;extra_copy_number=4
HG002_chrY	Liftoff	gene	26186389	26202807	.	-	.	ID=hg002_chrY_paternal_617;gene_name=SEPTIN14P23;gene_biotype=transcribed_pseudogene;origin_ID=SEPTIN14P23;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.514_0
HG002_chrY	Liftoff	transcript	26186389	26202807	.	-	.	ID=hg002_chrY_paternal_617.1;Parent=hg002_chrY_paternal_617;transcript_biotype=transcript;origin_ID=NR_174182.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_617;gene_name=SEPTIN14P23;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_617.1;transcript_name=hg002_chrY_paternal_617.1
HG002_chrY	Liftoff	exon	26186389	26186967	.	-	.	Parent=hg002_chrY_paternal_617.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	26195004	26195172	.	-	.	Parent=hg002_chrY_paternal_617.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	26202714	26202807	.	-	.	Parent=hg002_chrY_paternal_617.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	26192585	26195174	.	+	.	ID=hg002_chrY_paternal_618;gene_name=SEPTIN14P22;gene_biotype=pseudogene;origin_ID=SEPTIN14P22;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.450_1
HG002_chrY	Liftoff	gene	26197415	26200909	.	+	.	ID=hg002_chrY_paternal_619;gene_name=CICP2;gene_biotype=pseudogene;origin_ID=CICP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.515_0
HG002_chrY	Liftoff	gene	26200868	26202248	.	-	.	ID=hg002_chrY_paternal_620;gene_name=LINC00265-3P;gene_biotype=pseudogene;origin_ID=LINC00265-3P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.516_0
HG002_chrY	Liftoff	gene	26228370	26229752	.	+	.	ID=hg002_chrY_paternal_621;gene_name=GOLGA6L12P;gene_biotype=pseudogene;origin_ID=GOLGA6L12P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.517_0
HG002_chrY	Liftoff	gene	26230352	26231948	.	-	.	ID=hg002_chrY_paternal_622;gene_name=DNM1P25;gene_biotype=pseudogene;origin_ID=DNM1P25;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.518_0
HG002_chrY	Liftoff	gene	26239234	26245401	.	+	.	ID=hg002_chrY_paternal_623;gene_name=UBE2Q2P5Y;gene_biotype=pseudogene;origin_ID=UBE2Q2P5Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.519_0
HG002_chrY	Liftoff	gene	26263397	26268261	.	+	.	ID=hg002_chrY_paternal_624;gene_name=GOLGA2P3Y;gene_biotype=transcribed_pseudogene;origin_ID=GOLGA2P3Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.520_0
HG002_chrY	Liftoff	transcript	26263397	26268261	.	+	.	ID=hg002_chrY_paternal_624.1;Parent=hg002_chrY_paternal_624;transcript_biotype=transcript;origin_ID=NR_002195.2;extra_copy_number=0;gene_id=hg002_chrY_paternal_624;gene_name=GOLGA2P3Y;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_624.1;transcript_name=hg002_chrY_paternal_624.1
HG002_chrY	Liftoff	exon	26263397	26263439	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	26263626	26263704	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	26264824	26265175	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	26265472	26265529	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	26266886	26266960	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	26267381	26267469	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	26267725	26267913	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	26268003	26268095	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	26268178	26268261	.	+	.	Parent=hg002_chrY_paternal_624.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	gene	26267012	26267270	.	+	.	ID=hg002_chrY_paternal_625;gene_name=RN7SL725P;gene_biotype=pseudogene;origin_ID=RN7SL725P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.521_0
HG002_chrY	Liftoff	gene	26270260	26271790	.	-	.	ID=hg002_chrY_paternal_626;gene_name=LOC102724034;gene_biotype=lncRNA;origin_ID=LOC102724034;coverage=1.0;sequence_ID=0.965;extra_copy_number=2;copy_num_ID=REF.chr15.1533_2
HG002_chrY	Liftoff	transcript	26270260	26271790	.	-	.	ID=hg002_chrY_paternal_626.1;Parent=hg002_chrY_paternal_626;transcript_biotype=lnc_RNA;origin_ID=NR_120378.1;extra_copy_number=2;gene_id=hg002_chrY_paternal_626;gene_name=LOC102724034;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_626.1;transcript_name=hg002_chrY_paternal_626.1
HG002_chrY	Liftoff	exon	26270260	26270683	.	-	.	Parent=hg002_chrY_paternal_626.1;exon_number=3;extra_copy_number=2
HG002_chrY	Liftoff	exon	26270952	26271076	.	-	.	Parent=hg002_chrY_paternal_626.1;exon_number=2;extra_copy_number=2
HG002_chrY	Liftoff	exon	26271765	26271790	.	-	.	Parent=hg002_chrY_paternal_626.1;exon_number=1;extra_copy_number=2
HG002_chrY	Liftoff	gene	26272161	26272766	.	+	.	ID=hg002_chrY_paternal_627;gene_name=CHRFAM7AP1;gene_biotype=pseudogene;origin_ID=CHRFAM7AP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.522_0
HG002_chrY	Liftoff	gene	26273631	26281666	.	+	.	ID=hg002_chrY_paternal_628;gene_name=UBE2Q2P12;gene_biotype=pseudogene;origin_ID=UBE2Q2P12;coverage=0.994;sequence_ID=0.966;extra_copy_number=0;copy_num_ID=REF.chr15.1595_0
HG002_chrY	Liftoff	gene	26286360	26291725	.	+	.	ID=hg002_chrY_paternal_629;gene_name=CSPG4P3Y;gene_biotype=pseudogene;origin_ID=CSPG4P3Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.523_0
HG002_chrY	Liftoff	gene	26291003	26294800	.	+	.	ID=hg002_chrY_paternal_630;gene_name=CSPG4P2Y;gene_biotype=pseudogene;origin_ID=CSPG4P2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.524_0
HG002_chrY	Liftoff	gene	26295601	26300557	.	+	.	ID=hg002_chrY_paternal_631;gene_name=DNM1P26;gene_biotype=pseudogene;origin_ID=DNM1P26;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.525_0
HG002_chrY	Liftoff	gene	26300768	26303693	.	-	.	ID=hg002_chrY_paternal_632;gene_name=GOLGA6L14P;gene_biotype=pseudogene;origin_ID=GOLGA6L14P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.526_0
HG002_chrY	Liftoff	gene	26305571	26308328	.	-	.	ID=hg002_chrY_paternal_633;gene_name=GOLGA6L16P;gene_biotype=pseudogene;origin_ID=GOLGA6L16P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.527_0
HG002_chrY	Liftoff	gene	26371001	26374448	.	-	.	ID=hg002_chrY_paternal_634;gene_name=CDY19P;gene_biotype=pseudogene;origin_ID=CDY19P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.528_0
HG002_chrY	Liftoff	gene	26387887	26396541	.	+	.	ID=hg002_chrY_paternal_635;gene_name=USP9YP36;gene_biotype=pseudogene;origin_ID=USP9YP36;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.529_0
HG002_chrY	Liftoff	gene	26398420	26400442	.	-	.	ID=hg002_chrY_paternal_636;gene_name=USP9YP33;gene_biotype=pseudogene;origin_ID=USP9YP33;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.530_0
HG002_chrY	Liftoff	gene	26426318	26428454	.	+	.	ID=hg002_chrY_paternal_637;gene_name=CDY20P;gene_biotype=pseudogene;origin_ID=CDY20P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.531_0
HG002_chrY	Liftoff	gene	26430215	26433611	.	+	.	ID=hg002_chrY_paternal_638;gene_name=CDY1;gene_biotype=protein_coding;origin_ID=CDY1;coverage=1.0;sequence_ID=1.0;valid_ORFs=3;extra_copy_number=0;copy_num_ID=REF.chrY.532_0
HG002_chrY	Liftoff	transcript	26430215	26433002	.	+	.	ID=hg002_chrY_paternal_638.1;Parent=hg002_chrY_paternal_638;transcript_biotype=protein_coding;origin_ID=XM_011531512.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_638;gene_name=CDY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_638.1;transcript_name=hg002_chrY_paternal_638.1
HG002_chrY	Liftoff	exon	26430215	26431934	.	+	.	Parent=hg002_chrY_paternal_638.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	26432555	26433002	.	+	.	Parent=hg002_chrY_paternal_638.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	26430543	26431934	.	+	0	Parent=hg002_chrY_paternal_638.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	26432555	26432575	.	+	0	Parent=hg002_chrY_paternal_638.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	26430217	26432438	.	+	.	ID=hg002_chrY_paternal_638.2;Parent=hg002_chrY_paternal_638;transcript_biotype=protein_coding;origin_ID=NM_170723.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_638;gene_name=CDY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_638.2;transcript_name=hg002_chrY_paternal_638.2
HG002_chrY	Liftoff	exon	26430217	26432438	.	+	.	Parent=hg002_chrY_paternal_638.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	26430543	26432165	.	+	0	Parent=hg002_chrY_paternal_638.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	transcript	26430217	26433002	.	+	.	ID=hg002_chrY_paternal_638.3;Parent=hg002_chrY_paternal_638;transcript_biotype=protein_coding;origin_ID=NM_004680.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;tag=MANE Select;gene_id=hg002_chrY_paternal_638;gene_name=CDY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_638.3;transcript_name=hg002_chrY_paternal_638.3
HG002_chrY	Liftoff	exon	26430217	26432134	.	+	.	Parent=hg002_chrY_paternal_638.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	26432555	26433002	.	+	.	Parent=hg002_chrY_paternal_638.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	26430543	26432134	.	+	0	Parent=hg002_chrY_paternal_638.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	26432555	26432627	.	+	1	Parent=hg002_chrY_paternal_638.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	transcript	26430217	26433611	.	+	.	ID=hg002_chrY_paternal_638.4;Parent=hg002_chrY_paternal_638;transcript_biotype=transcript;origin_ID=XR_938657.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_638;gene_name=CDY1;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_638.4;transcript_name=hg002_chrY_paternal_638.4
HG002_chrY	Liftoff	exon	26430217	26432134	.	+	.	Parent=hg002_chrY_paternal_638.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	26432555	26432754	.	+	.	Parent=hg002_chrY_paternal_638.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	26433530	26433611	.	+	.	Parent=hg002_chrY_paternal_638.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	26471002	26471328	.	+	.	ID=hg002_chrY_paternal_639;gene_name=ELOCP34;gene_biotype=pseudogene;origin_ID=ELOCP34;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.533_0
HG002_chrY	Liftoff	gene	26483042	26494924	.	-	.	ID=hg002_chrY_paternal_640;gene_name=OFD1P12Y;gene_biotype=pseudogene;origin_ID=OFD1P12Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.534_0
HG002_chrY	Liftoff	gene	26507425	26515191	.	+	.	ID=hg002_chrY_paternal_641;gene_name=TRAPPC2P10;gene_biotype=pseudogene;origin_ID=TRAPPC2P10;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.535_0
HG002_chrY	Liftoff	gene	26518007	26521653	.	-	.	ID=hg002_chrY_paternal_642;gene_name=RAB9AP5;gene_biotype=pseudogene;origin_ID=RAB9AP5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.536_0
HG002_chrY	Liftoff	gene	26531095	26531253	.	+	.	ID=hg002_chrY_paternal_643;gene_name=USP9YP12;gene_biotype=pseudogene;origin_ID=USP9YP12;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.537_0
HG002_chrY	Liftoff	gene	26531447	26531600	.	+	.	ID=hg002_chrY_paternal_644;gene_name=RNU1-86P;gene_biotype=pseudogene;origin_ID=RNU1-86P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.538_0
HG002_chrY	Liftoff	gene	26536595	26541490	.	+	.	ID=hg002_chrY_paternal_645;gene_name=TTTY3B;gene_biotype=lncRNA;origin_ID=TTTY3B;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.539_0
HG002_chrY	Liftoff	transcript	26536595	26541490	.	+	.	ID=hg002_chrY_paternal_645.1;Parent=hg002_chrY_paternal_645;transcript_biotype=lnc_RNA;origin_ID=NR_002176.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_645;gene_name=TTTY3B;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_645.1;transcript_name=hg002_chrY_paternal_645.1
HG002_chrY	Liftoff	exon	26536595	26536698	.	+	.	Parent=hg002_chrY_paternal_645.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	26538897	26539031	.	+	.	Parent=hg002_chrY_paternal_645.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	26541386	26541490	.	+	.	Parent=hg002_chrY_paternal_645.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	gene	26538115	26541554	.	-	.	ID=hg002_chrY_paternal_646;gene_name=USP9YP9;gene_biotype=pseudogene;origin_ID=USP9YP9;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.540_0
HG002_chrY	Liftoff	gene	26556957	26558086	.	-	.	ID=hg002_chrY_paternal_647;gene_name=USP9YP19;gene_biotype=pseudogene;origin_ID=USP9YP19;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.477_1
HG002_chrY	Liftoff	gene	26558086	26558304	.	-	.	ID=hg002_chrY_paternal_648;gene_name=USP9YP13;gene_biotype=pseudogene;origin_ID=USP9YP13;coverage=1.0;sequence_ID=1.0;extra_copy_number=1;copy_num_ID=REF.chrY.478_1
HG002_chrY	Liftoff	gene	26559715	26561513	.	+	.	ID=hg002_chrY_paternal_649;gene_name=XKRYP5;gene_biotype=pseudogene;origin_ID=XKRYP5;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.541_0
HG002_chrY	Liftoff	gene	26615408	26616738	.	+	.	ID=hg002_chrY_paternal_650;gene_name=CDY16P;gene_biotype=pseudogene;origin_ID=CDY16P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.542_0
HG002_chrY	Liftoff	gene	26620696	26623937	.	+	.	ID=hg002_chrY_paternal_651;gene_name=CDY15P;gene_biotype=pseudogene;origin_ID=CDY15P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.543_0
HG002_chrY	Liftoff	gene	26669057	26669382	.	+	.	ID=hg002_chrY_paternal_652;gene_name=ELOCP9;gene_biotype=pseudogene;origin_ID=ELOCP9;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.544_0
HG002_chrY	Liftoff	gene	26679953	26707392	.	-	.	ID=hg002_chrY_paternal_653;gene_name=OFD1P11Y;gene_biotype=pseudogene;origin_ID=OFD1P11Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.545_0
HG002_chrY	Liftoff	gene	26712530	26723345	.	+	.	ID=hg002_chrY_paternal_654;gene_name=TRAPPC2P9;gene_biotype=pseudogene;origin_ID=TRAPPC2P9;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.546_0
HG002_chrY	Liftoff	gene	26726461	26727027	.	-	.	ID=hg002_chrY_paternal_655;gene_name=RAB9AP1;gene_biotype=pseudogene;origin_ID=RAB9AP1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.547_0
HG002_chrY	Liftoff	gene	26731522	26737961	.	+	.	ID=hg002_chrY_paternal_656;gene_name=USP9YP29;gene_biotype=pseudogene;origin_ID=USP9YP29;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.548_0
HG002_chrY	Liftoff	gene	26737114	26737277	.	+	.	ID=hg002_chrY_paternal_657;gene_name=RNU1-97P;gene_biotype=pseudogene;origin_ID=RNU1-97P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.549_0
HG002_chrY	Liftoff	gene	26741966	26744022	.	-	.	ID=hg002_chrY_paternal_658;gene_name=USP9YP25;gene_biotype=pseudogene;origin_ID=USP9YP25;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.550_0
HG002_chrY	Liftoff	gene	26760730	26762528	.	+	.	ID=hg002_chrY_paternal_659;gene_name=XKRYP3;gene_biotype=pseudogene;origin_ID=XKRYP3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.551_0
HG002_chrY	Liftoff	gene	26783534	26796875	.	+	.	ID=hg002_chrY_paternal_660;gene_name=PRYP4;gene_biotype=pseudogene;origin_ID=PRYP4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.552_0
HG002_chrY	Liftoff	gene	26799380	26799711	.	-	.	ID=hg002_chrY_paternal_661;gene_name=ELOCP11;gene_biotype=pseudogene;origin_ID=ELOCP11;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.553_0
HG002_chrY	Liftoff	gene	26802730	26803937	.	-	.	ID=hg002_chrY_paternal_662;gene_name=CDY23P;gene_biotype=pseudogene;origin_ID=CDY23P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.554_0
HG002_chrY	Liftoff	gene	26810393	26816995	.	+	.	ID=hg002_chrY_paternal_663;gene_name=USP9YP26;gene_biotype=pseudogene;origin_ID=USP9YP26;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.555_0
HG002_chrY	Liftoff	gene	26819574	26820376	.	+	.	ID=hg002_chrY_paternal_664;gene_name=HSFY8P;gene_biotype=pseudogene;origin_ID=HSFY8P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.556_0
HG002_chrY	Liftoff	gene	26837440	26840564	.	-	.	ID=hg002_chrY_paternal_665;gene_name=LOC107987352;gene_biotype=lncRNA;origin_ID=LOC107987352;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.557_0
HG002_chrY	Liftoff	transcript	26837440	26840564	.	-	.	ID=hg002_chrY_paternal_665.1;Parent=hg002_chrY_paternal_665;transcript_biotype=lnc_RNA;origin_ID=XR_001756085.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_665;gene_name=LOC107987352;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_665.1;transcript_name=hg002_chrY_paternal_665.1
HG002_chrY	Liftoff	exon	26837440	26838768	.	-	.	Parent=hg002_chrY_paternal_665.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	26840304	26840364	.	-	.	Parent=hg002_chrY_paternal_665.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	26840482	26840564	.	-	.	Parent=hg002_chrY_paternal_665.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	26863321	26896624	.	-	.	ID=hg002_chrY_paternal_666;gene_name=OFD1P10Y;gene_biotype=pseudogene;origin_ID=OFD1P10Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.558_0
HG002_chrY	Liftoff	gene	26929192	26941321	.	+	.	ID=hg002_chrY_paternal_667;gene_name=RBMY2CP;gene_biotype=pseudogene;origin_ID=RBMY2CP;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.559_0
HG002_chrY	Liftoff	gene	27001478	27042981	.	-	.	ID=hg002_chrY_paternal_668;gene_name=REREP2Y;gene_biotype=transcribed_pseudogene;origin_ID=REREP2Y;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.560_0
HG002_chrY	Liftoff	transcript	27001478	27042981	.	-	.	ID=hg002_chrY_paternal_668.1;Parent=hg002_chrY_paternal_668;transcript_biotype=transcript;origin_ID=XR_938673.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_668;gene_name=REREP2Y;gene_biotype=transcribed_pseudogene;transcript_id=hg002_chrY_paternal_668.1;transcript_name=hg002_chrY_paternal_668.1
HG002_chrY	Liftoff	exon	27001478	27006067	.	-	.	Parent=hg002_chrY_paternal_668.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	27015686	27015758	.	-	.	Parent=hg002_chrY_paternal_668.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	27042579	27042981	.	-	.	Parent=hg002_chrY_paternal_668.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	27054985	27055122	.	+	.	ID=hg002_chrY_paternal_669;gene_name=LOC124900507;gene_biotype=snoRNA;origin_ID=LOC124900507;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.561_0
HG002_chrY	Liftoff	transcript	27054985	27055122	.	+	.	ID=hg002_chrY_paternal_669.1;Parent=hg002_chrY_paternal_669;transcript_biotype=snoRNA;origin_ID=XR_007068485.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_669;gene_name=LOC124900507;gene_biotype=snoRNA;transcript_id=hg002_chrY_paternal_669.1;transcript_name=hg002_chrY_paternal_669.1
HG002_chrY	Liftoff	exon	27054985	27055122	.	+	.	Parent=hg002_chrY_paternal_669.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	27085424	27098839	.	-	.	ID=hg002_chrY_paternal_670;gene_name=PPP1R12BP2;gene_biotype=pseudogene;origin_ID=PPP1R12BP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.562_0
HG002_chrY	Liftoff	gene	27168590	27168693	.	+	.	ID=hg002_chrY_paternal_671;gene_name=RNU6-1314P;gene_biotype=pseudogene;origin_ID=RNU6-1314P;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.563_0
HG002_chrY	Liftoff	gene	27208555	27208831	.	+	.	ID=hg002_chrY_paternal_672;gene_name=CYCSP48;gene_biotype=pseudogene;origin_ID=CYCSP48;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.564_0
HG002_chrY	Liftoff	gene	27208749	27216743	.	-	.	ID=hg002_chrY_paternal_673;gene_name=LOC105377244;gene_biotype=lncRNA;origin_ID=LOC105377244;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.565_0
HG002_chrY	Liftoff	transcript	27208749	27216743	.	-	.	ID=hg002_chrY_paternal_673.1;Parent=hg002_chrY_paternal_673;transcript_biotype=lnc_RNA;origin_ID=XR_938675.3;extra_copy_number=0;gene_id=hg002_chrY_paternal_673;gene_name=LOC105377244;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_673.1;transcript_name=hg002_chrY_paternal_673.1
HG002_chrY	Liftoff	exon	27208749	27213351	.	-	.	Parent=hg002_chrY_paternal_673.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	27214218	27214384	.	-	.	Parent=hg002_chrY_paternal_673.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	27216513	27216743	.	-	.	Parent=hg002_chrY_paternal_673.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	gene	27216988	27222532	.	+	.	ID=hg002_chrY_paternal_674;gene_name=ANKRD36P1;gene_biotype=pseudogene;origin_ID=ANKRD36P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.566_0
HG002_chrY	Liftoff	gene	27232262	27248433	.	+	.	ID=hg002_chrY_paternal_675;gene_name=LOC102723869;gene_biotype=lncRNA;origin_ID=LOC102723869;coverage=0.605;sequence_ID=0.573;extra_copy_number=0;copy_num_ID=REF.chr16.1033_0
HG002_chrY	Liftoff	transcript	27232262	27248433	.	+	.	ID=hg002_chrY_paternal_675.1;Parent=hg002_chrY_paternal_675;transcript_biotype=lnc_RNA;origin_ID=XR_001756146.1;extra_copy_number=0;gene_id=hg002_chrY_paternal_675;gene_name=LOC102723869;gene_biotype=lncRNA;transcript_id=hg002_chrY_paternal_675.1;transcript_name=hg002_chrY_paternal_675.1
HG002_chrY	Liftoff	exon	27232262	27232529	.	+	.	Parent=hg002_chrY_paternal_675.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	27244564	27244592	.	+	.	Parent=hg002_chrY_paternal_675.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	27244687	27244759	.	+	.	Parent=hg002_chrY_paternal_675.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	27248403	27248433	.	+	.	Parent=hg002_chrY_paternal_675.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	gene	27349045	27349164	.	+	.	ID=hg002_chrY_paternal_676;gene_name=LOC124905308;gene_biotype=pseudogene;origin_ID=LOC124905308;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.567_0
HG002_chrY	Liftoff	gene	27356998	27358003	.	+	.	ID=hg002_chrY_paternal_677;gene_name=CYCSP49;gene_biotype=pseudogene;origin_ID=CYCSP49;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.568_0
HG002_chrY	Liftoff	gene	27371641	27387516	.	+	.	ID=hg002_chrY_paternal_678;gene_name=TPTE2P4;gene_biotype=pseudogene;origin_ID=TPTE2P4;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.569_0
HG002_chrY	Liftoff	gene	27394095	27395213	.	-	.	ID=hg002_chrY_paternal_679;gene_name=SLC25A15P1;gene_biotype=pseudogene;origin_ID=SLC25A15P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.570_0
HG002_chrY	Liftoff	gene	27402318	27442309	.	-	.	ID=hg002_chrY_paternal_680;gene_name=PARP4P1;gene_biotype=pseudogene;origin_ID=PARP4P1;coverage=0.999;sequence_ID=0.999;extra_copy_number=0;copy_num_ID=REF.chrY.571_0
HG002_chrY	Liftoff	gene	27433976	27435021	.	-	.	ID=hg002_chrY_paternal_681;gene_name=CCNQP2;gene_biotype=pseudogene;origin_ID=CCNQP2;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.572_0
HG002_chrY	Liftoff	gene	62067532	62068659	.	+	.	ID=hg002_chrY_paternal_682;gene_name=CTBP2P1;gene_biotype=pseudogene;origin_ID=CTBP2P1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.573_0
HG002_chrY	Liftoff	gene	62166627	62181324	.	+	.	ID=hg002_chrY_paternal_683;gene_name=SPRY3;gene_biotype=protein_coding;origin_ID=SPRY3_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=1;extra_copy_number=0;copy_num_ID=REF.chrY.574_0
HG002_chrY	Liftoff	transcript	62166627	62181324	.	+	.	ID=hg002_chrY_paternal_683.1;Parent=hg002_chrY_paternal_683;transcript_biotype=protein_coding;origin_ID=NM_005840.4_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_683;gene_name=SPRY3;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_683.1;transcript_name=hg002_chrY_paternal_683.1
HG002_chrY	Liftoff	exon	62166627	62166967	.	+	.	Parent=hg002_chrY_paternal_683.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62172598	62181324	.	+	.	Parent=hg002_chrY_paternal_683.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62172704	62173570	.	+	0	Parent=hg002_chrY_paternal_683.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	gene	62203519	62204415	.	-	.	ID=hg002_chrY_paternal_684;gene_name=TRPC6P1;gene_biotype=pseudogene;origin_ID=TRPC6P1_3;coverage=1.0;sequence_ID=0.992;extra_copy_number=1;copy_num_ID=REF.chrY.580_1
HG002_chrY	Liftoff	gene	62229666	62231398	.	-	.	ID=hg002_chrY_paternal_685;gene_name=AMD1P2;gene_biotype=pseudogene;origin_ID=AMD1P2_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.575_0
HG002_chrY	Liftoff	gene	62277207	62277456	.	+	.	ID=hg002_chrY_paternal_686;gene_name=DPH3P2;gene_biotype=pseudogene;origin_ID=DPH3P2_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.576_0
HG002_chrY	Liftoff	gene	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;origin_ID=VAMP7_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=5;extra_copy_number=0;copy_num_ID=REF.chrY.577_0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.1;Parent=hg002_chrY_paternal_687;transcript_biotype=protein_coding;origin_ID=NM_001145149.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.1;transcript_name=hg002_chrY_paternal_687.1
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291152	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62321432	62321499	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62291072	62291152	.	+	0	Parent=hg002_chrY_paternal_687.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62299720	62299857	.	+	0	Parent=hg002_chrY_paternal_687.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62302108	62302198	.	+	0	Parent=hg002_chrY_paternal_687.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62321432	62321499	.	+	2	Parent=hg002_chrY_paternal_687.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62341317	62341409	.	+	0	Parent=hg002_chrY_paternal_687.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62343498	62343566	.	+	0	Parent=hg002_chrY_paternal_687.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.2;Parent=hg002_chrY_paternal_687;transcript_biotype=protein_coding;origin_ID=NM_001185183.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.2;transcript_name=hg002_chrY_paternal_687.2
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291217	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62297231	62297288	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62291072	62291217	.	+	0	Parent=hg002_chrY_paternal_687.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62297231	62297288	.	+	1	Parent=hg002_chrY_paternal_687.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62299720	62299857	.	+	0	Parent=hg002_chrY_paternal_687.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62302108	62302198	.	+	0	Parent=hg002_chrY_paternal_687.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62341317	62341409	.	+	2	Parent=hg002_chrY_paternal_687.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62343498	62343754	.	+	2	Parent=hg002_chrY_paternal_687.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.3;Parent=hg002_chrY_paternal_687;transcript_biotype=protein_coding;origin_ID=NM_005638.6_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.3;transcript_name=hg002_chrY_paternal_687.3
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291217	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62297231	62297288	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62321432	62321499	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62291072	62291217	.	+	0	Parent=hg002_chrY_paternal_687.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62297231	62297288	.	+	1	Parent=hg002_chrY_paternal_687.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62299720	62299857	.	+	0	Parent=hg002_chrY_paternal_687.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62302108	62302198	.	+	0	Parent=hg002_chrY_paternal_687.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62321432	62321499	.	+	2	Parent=hg002_chrY_paternal_687.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62341317	62341409	.	+	0	Parent=hg002_chrY_paternal_687.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62343498	62343566	.	+	0	Parent=hg002_chrY_paternal_687.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.4;Parent=hg002_chrY_paternal_687;transcript_biotype=transcript;origin_ID=NR_033714.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.4;transcript_name=hg002_chrY_paternal_687.4
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291217	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62321432	62321499	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.5;Parent=hg002_chrY_paternal_687;transcript_biotype=transcript;origin_ID=NR_033715.2_1;extra_copy_number=0;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.5;transcript_name=hg002_chrY_paternal_687.5
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291152	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62297231	62297288	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62321432	62321499	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.6;Parent=hg002_chrY_paternal_687;transcript_biotype=protein_coding;origin_ID=XM_011545653.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.6;transcript_name=hg002_chrY_paternal_687.6
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291238	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62297231	62297288	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62291234	62291238	.	+	0	Parent=hg002_chrY_paternal_687.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62297231	62297288	.	+	1	Parent=hg002_chrY_paternal_687.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62299720	62299857	.	+	0	Parent=hg002_chrY_paternal_687.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62302108	62302198	.	+	0	Parent=hg002_chrY_paternal_687.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62341317	62341409	.	+	2	Parent=hg002_chrY_paternal_687.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62343498	62343754	.	+	2	Parent=hg002_chrY_paternal_687.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62282949	62345384	.	+	.	ID=hg002_chrY_paternal_687.7;Parent=hg002_chrY_paternal_687;transcript_biotype=protein_coding;origin_ID=XM_017030063.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_687;gene_name=VAMP7;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_687.7;transcript_name=hg002_chrY_paternal_687.7
HG002_chrY	Liftoff	exon	62282949	62283052	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62291063	62291238	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62297231	62297288	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62299720	62299857	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62302108	62302198	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62321432	62321499	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62341317	62341409	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62343498	62345384	.	+	.	Parent=hg002_chrY_paternal_687.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62291234	62291238	.	+	0	Parent=hg002_chrY_paternal_687.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62297231	62297288	.	+	1	Parent=hg002_chrY_paternal_687.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62299720	62299857	.	+	0	Parent=hg002_chrY_paternal_687.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62302108	62302198	.	+	0	Parent=hg002_chrY_paternal_687.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62321432	62321499	.	+	2	Parent=hg002_chrY_paternal_687.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62341317	62341409	.	+	0	Parent=hg002_chrY_paternal_687.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62343498	62343566	.	+	0	Parent=hg002_chrY_paternal_687.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	gene	62362988	62363063	.	-	.	ID=hg002_chrY_paternal_688;gene_name=LOC124905309;gene_biotype=pseudogene;origin_ID=LOC124905309;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.578_0
HG002_chrY	Liftoff	gene	62380608	62380941	.	-	.	ID=hg002_chrY_paternal_689;gene_name=ELOCP24;gene_biotype=pseudogene;origin_ID=ELOCP24_1;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.579_0
HG002_chrY	Liftoff	gene	62386969	62387865	.	-	.	ID=hg002_chrY_paternal_690;gene_name=TRPC6P1;gene_biotype=pseudogene;origin_ID=TRPC6P1_3;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=REF.chrY.580_0
HG002_chrY	Liftoff	gene	62399166	62412960	.	+	.	ID=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;origin_ID=IL9R_1;coverage=1.0;sequence_ID=1.0;valid_ORFs=13;extra_copy_number=0;copy_num_ID=REF.chrY.581_0
HG002_chrY	Liftoff	transcript	62399166	62412428	.	+	.	ID=hg002_chrY_paternal_691.1;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_047442735.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.1;transcript_name=hg002_chrY_paternal_691.1
HG002_chrY	Liftoff	exon	62399166	62399401	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404524	62404637	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406899	62407097	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.1;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.1;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404524	62404637	.	+	2	Parent=hg002_chrY_paternal_691.1;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.1;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.1;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.1;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406899	62407097	.	+	0	Parent=hg002_chrY_paternal_691.1;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.1;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62411463	.	+	1	Parent=hg002_chrY_paternal_691.1;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399223	62412428	.	+	.	ID=hg002_chrY_paternal_691.2;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_011545650.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.2;transcript_name=hg002_chrY_paternal_691.2
HG002_chrY	Liftoff	exon	62399223	62399401	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409517	62409749	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.2;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.2;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.2;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.2;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.2;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.2;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.2;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.2;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.2;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409517	62409749	.	+	0	Parent=hg002_chrY_paternal_691.2;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62411463	.	+	1	Parent=hg002_chrY_paternal_691.2;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399223	62412428	.	+	.	ID=hg002_chrY_paternal_691.3;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_011545652.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.3;transcript_name=hg002_chrY_paternal_691.3
HG002_chrY	Liftoff	exon	62399223	62399401	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.3;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.3;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.3;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.3;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.3;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.3;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.3;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.3;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62411463	.	+	1	Parent=hg002_chrY_paternal_691.3;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399223	62412428	.	+	.	ID=hg002_chrY_paternal_691.4;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_047442733.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.4;transcript_name=hg002_chrY_paternal_691.4
HG002_chrY	Liftoff	exon	62399223	62399401	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406899	62407097	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409517	62409749	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.4;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.4;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.4;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.4;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.4;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.4;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406899	62407097	.	+	0	Parent=hg002_chrY_paternal_691.4;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.4;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.4;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409517	62409749	.	+	0	Parent=hg002_chrY_paternal_691.4;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62411463	.	+	1	Parent=hg002_chrY_paternal_691.4;exon_number=11;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399223	62412960	.	+	.	ID=hg002_chrY_paternal_691.5;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_047442734.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.5;transcript_name=hg002_chrY_paternal_691.5
HG002_chrY	Liftoff	exon	62399223	62399401	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404524	62404637	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409517	62412960	.	+	.	Parent=hg002_chrY_paternal_691.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.5;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.5;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404524	62404637	.	+	2	Parent=hg002_chrY_paternal_691.5;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.5;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.5;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.5;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.5;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.5;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.5;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409517	62409753	.	+	0	Parent=hg002_chrY_paternal_691.5;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399229	62412428	.	+	.	ID=hg002_chrY_paternal_691.6;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_017030044.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.6;transcript_name=hg002_chrY_paternal_691.6
HG002_chrY	Liftoff	exon	62399229	62399401	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406899	62407097	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.6;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.6;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.6;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.6;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.6;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.6;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406899	62407097	.	+	0	Parent=hg002_chrY_paternal_691.6;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.6;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.6;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.6;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399231	62412428	.	+	.	ID=hg002_chrY_paternal_691.7;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_011545645.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.7;transcript_name=hg002_chrY_paternal_691.7
HG002_chrY	Liftoff	exon	62399231	62399401	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.7;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.7;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.7;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.7;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.7;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.7;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.7;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.7;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.7;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.7;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399231	62412428	.	+	.	ID=hg002_chrY_paternal_691.8;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_011545646.3;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.8;transcript_name=hg002_chrY_paternal_691.8
HG002_chrY	Liftoff	exon	62399231	62399401	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404524	62404637	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.8;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.8;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404524	62404637	.	+	2	Parent=hg002_chrY_paternal_691.8;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.8;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.8;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.8;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.8;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.8;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.8;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.8;exon_number=10;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399233	62412428	.	+	.	ID=hg002_chrY_paternal_691.9;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_047442732.1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.9;transcript_name=hg002_chrY_paternal_691.9
HG002_chrY	Liftoff	exon	62399233	62399401	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62402944	62404637	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404487	62404637	.	+	0	Parent=hg002_chrY_paternal_691.9;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.9;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.9;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.9;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.9;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.9;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.9;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.9;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399236	62412428	.	+	.	ID=hg002_chrY_paternal_691.10;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_017030051.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.10;transcript_name=hg002_chrY_paternal_691.10
HG002_chrY	Liftoff	exon	62399236	62399401	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399374	62399401	.	+	0	Parent=hg002_chrY_paternal_691.10;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.10;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.10;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.10;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.10;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.10;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399310	62412428	.	+	.	ID=hg002_chrY_paternal_691.11;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=NM_002186.3_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.11;transcript_name=hg002_chrY_paternal_691.11
HG002_chrY	Liftoff	exon	62399310	62399401	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404524	62404637	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405295	62405473	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406038	62406183	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399374	62399401	.	+	0	Parent=hg002_chrY_paternal_691.11;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404524	62404637	.	+	2	Parent=hg002_chrY_paternal_691.11;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.11;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405295	62405473	.	+	1	Parent=hg002_chrY_paternal_691.11;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406038	62406183	.	+	2	Parent=hg002_chrY_paternal_691.11;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.11;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.11;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.11;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.11;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62399310	62412428	.	+	.	ID=hg002_chrY_paternal_691.12;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=NM_176786.2_1;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.12;transcript_name=hg002_chrY_paternal_691.12
HG002_chrY	Liftoff	exon	62399310	62399401	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62403022	62403122	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62404500	62404637	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405067	62405178	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	exon	62405302	62405473	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406067	62406183	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	exon	62406896	62407097	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	exon	62407701	62407806	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62399358	62399401	.	+	0	Parent=hg002_chrY_paternal_691.12;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62403022	62403122	.	+	1	Parent=hg002_chrY_paternal_691.12;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62404500	62404637	.	+	2	Parent=hg002_chrY_paternal_691.12;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405067	62405178	.	+	2	Parent=hg002_chrY_paternal_691.12;exon_number=4;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62405302	62405473	.	+	1	Parent=hg002_chrY_paternal_691.12;exon_number=5;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406067	62406183	.	+	0	Parent=hg002_chrY_paternal_691.12;exon_number=6;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62406896	62407097	.	+	0	Parent=hg002_chrY_paternal_691.12;exon_number=7;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407701	62407806	.	+	2	Parent=hg002_chrY_paternal_691.12;exon_number=8;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62411463	.	+	1	Parent=hg002_chrY_paternal_691.12;exon_number=9;extra_copy_number=0
HG002_chrY	Liftoff	transcript	62407423	62412428	.	+	.	ID=hg002_chrY_paternal_691.13;Parent=hg002_chrY_paternal_691;transcript_biotype=protein_coding;origin_ID=XM_017030055.2;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0;manual=False;gene_id=hg002_chrY_paternal_691;gene_name=IL9R;gene_biotype=protein_coding;transcript_id=hg002_chrY_paternal_691.13;transcript_name=hg002_chrY_paternal_691.13
HG002_chrY	Liftoff	exon	62407423	62407635	.	+	.	Parent=hg002_chrY_paternal_691.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	exon	62409142	62409226	.	+	.	Parent=hg002_chrY_paternal_691.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	exon	62411427	62412428	.	+	.	Parent=hg002_chrY_paternal_691.13;exon_number=3;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62407451	62407635	.	+	0	Parent=hg002_chrY_paternal_691.13;exon_number=1;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62409142	62409226	.	+	1	Parent=hg002_chrY_paternal_691.13;exon_number=2;extra_copy_number=0
HG002_chrY	Liftoff	CDS	62411427	62412020	.	+	0	Parent=hg002_chrY_paternal_691.13;exon_number=3;extra_copy_number=0