# GENERATED FILE DO NOT EDIT
track cytoBandIdeo
shortLabel Ideogram
longLabel Ideogram
type bigBed 4 +
bigDataUrl ideoGram/ideoGram.bb
visibility dense
group map
track Flagger
shortLabel Flagger
longLabel Flagger
type bigBed 9
bigDataUrl flagger/final_flagger_prediction_hap2.bb
visibility hide
itemRgb on
html ../html/empty.html
group map
track assembly_data
shortLabel Assembly Data
longLabel Assembly Data
superTrack on hide
group map
track PacBio_HiFi
shortLabel PacBio HiFi
longLabel PacBio HiFi
type bam
bigDataUrl t2t_h9_hifi/t2t_h9_v01_hap2.t2t_h9_hifi.bam
visibility hide
html ../html/empty.html
group map
parent assembly_data
track ONT_2024
shortLabel ONT_2024
longLabel ONT_2024
type bam
bigDataUrl h9_ont_2024/t2t_h9_v01_hap2.h9_ont_2024.bam
visibility hide
html ../html/empty.html
group map
parent assembly_data
track dna_brnn
shortLabel DNA-BRNN
longLabel DNA-BRNN
type bigBed 3
bigDataUrl dna-brnn/H9v0.1.hap2.three.hapchr.bb
visibility hide
group map
color 0,128,0
html ../html/empty.html
priority 40
track telomeres
shortLabel Telomeres
longLabel Telomere annotations
type bigBed 4
bigDataUrl teloscope/t2t_h9_v01_hap2.teloscope.bb
visibility hide
group map
html ../html/telomeres.html
track HumAS_HMMER
shortLabel Human AS-HOR
longLabel Human Alpha Satellite Higher-Order Repeats
superTrack on hide
group map
visibility hide
type bigBed 9
track AS_HOR_SF
shortLabel AS-HOR+SF
longLabel HMMER AS-HOR+SF
type bigBed 9
bigDataUrl AS-HOR/AS-HOR+SF-vs-t2t_h9_v01_hap2.bb
visibility dense
parent HumAS_HMMER
group map
html ../html/empty.html
filterLabel.name AS/HOR/SF name
filterText.name *
filterType.name wildcard
track AS_HOR
shortLabel AS-HOR
longLabel HMMER AS-HOR
type bigBed 9
bigDataUrl AS-HOR/AS-HOR-vs-t2t_h9_v01_hap2.bb
visibility dense
parent HumAS_HMMER
group map
html ../html/empty.html
filterLabel.name AS/HOR name
filterText.name *
filterType.name wildcard
track AS_SF
shortLabel AS-SF
longLabel HMMER AS-SF
type bigBed 9
bigDataUrl AS-HOR/AS-SF-vs-t2t_h9_v01_hap2.bb
visibility dense
parent HumAS_HMMER
group map
html ../html/empty.html
filterLabel.name AS/SF name
filterText.name *
filterType.name wildcard
track AS_strand
shortLabel AS-strand
longLabel HMMER AS-strand
type bigBed 9
bigDataUrl AS-HOR/AS-strand-vs-t2t_h9_v01_hap2.bb
visibility dense
parent HumAS_HMMER
group map
html ../html/empty.html
filterLabel.name AS name
filterText.name *
filterType.name wildcard
track cat_consensusV2
shortLabel CAT Genes V2
longLabel CAT Consensus Gene Set V2
type bigGenePred
bigDataUrl cat-genesV2/consensus/t2t_h9_v01_hap2.cat-genes.ranks.bb
visibility hide
group genes
itemRgb on
searchIndex name,name2,gene_id,transcript_id,source_transcript,original_gene_id
labelFields name,name2,gene_id,transcript_id,source_transcript,original_gene_id
defaultLabelFields name2
labelSeparator "/"
html ../html/empty.html
priority 1.0
filterLabel.name2 Gene symbol
filterType.name2 wildcard
filterText.name2 *
filterLabel.transcript_rank Gene transcript rank
filterByRange.transcript_rank on
filter.transcript_rank 0:1000
track cat_notch2nl_region_genesV2
shortLabel NOTCH2NL Region Genes V2
longLabel CAT NOTCH2NL Region Genes V2
type bigGenePred
bigDataUrl cat-genesV2/consensus/t2t_h9_v01_hap2.cat-genes.ranks.NOTCH2NL-region.bb
visibility hide
group h9project
itemRgb on
searchIndex name,name2,gene_id,transcript_id,source_transcript,original_gene_id
labelFields name,name2,gene_id,transcript_id,source_transcript,original_gene_id
defaultLabelFields name2
labelSeparator "/"
html ../html/empty.html
priority 1.1
filterLabel.name2 Gene symbol
filterType.name2 wildcard
filterText.name2 *
filterLabel.transcript_rank Gene transcript rank
filterByRange.transcript_rank on
filter.transcript_rank 0:1000
track cat_notch2nl_genesV2
shortLabel NOTCH2NL Genes V2
longLabel CAT NOTCH2NL V2
type bigGenePred
bigDataUrl cat-genesV2/consensus/t2t_h9_v01_hap2.cat-genes.ranks.NOTCH2NL.bb
visibility hide
group h9project
itemRgb on
searchIndex name,name2,gene_id,transcript_id,source_transcript,original_gene_id
labelFields name,name2,gene_id,transcript_id,source_transcript,original_gene_id
defaultLabelFields name2
labelSeparator "/"
html ../html/empty.html
priority 1.2
filterLabel.name2 Gene symbol
filterType.name2 wildcard
filterText.name2 *
filterLabel.transcript_rank Gene transcript rank
filterByRange.transcript_rank on
filter.transcript_rank 0:1000
track gencodeV48_orthlogs
shortLabel GENCODE V48_Orthlogs
longLabel GENCODE V48_Orthlogs
type bigGenePred
bigDataUrl gencodeV48-orthlogos/t2t_h9_v01_hap2.gencodeV48-map.bb
visibility hide
group genes
itemRgb on
searchIndex name,name2
labelFields name,name2
defaultLabelFields name2
labelSeparator "/"
html ../html/empty.html
track notch2nl-uniq-genes
shortLabel NOTCH2NL Unique Genes
longLabel NOTCH2NL Region Unique Genes
type bigBed 4
bigDataUrl notch2nl/uniq-gene.t2t_h9_v01_hap2.bb
visibility hide
color 48,25,52
group h9project
html ../html/notch2nl-uniq-genes.html
track tRNAs
shortLabel tRNAs
longLabel tRNAscan-SE tRNA annotations
type bigBed 12 +
bigDataUrl tRNA/tRNA.bb
visibility hide
group genes
itemRgb on
html ../html/tRNAs.html
track chm13_variants
shortLabel CHM13 variants
longLabel CHM13 variants
type vcfTabix
bigDataUrl variants/H9_hap2_linear.g.chrhap.vcf.gz
visibility hide
group phenDis
html ../html/empty.html
priority 10
track assou_2020
shortLabel Assou 2020 pluripotent abnormalities
longLabel Assou 2020 pluripotent abnormalities
type bigPsl
bigDataUrl assou-2020/assou-2020.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
group phenDis
html ../html/assou-2020.html
priority 20.1
color 0,100,120
canPack on
track goh_2025
shortLabel Goh 2025 neurodev CNVs
longLabel Goh 2025 neurodevelopment CNVs
type bigPsl
bigDataUrl goh-2025/goh-2025.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
group phenDis
html ../html/goh-2025.html
priority 20.1
color 0,100,120
canPack on
mouseOver ${name} (${strand})
track encode_isoseq
shortLabel ENCODE IsoSeq
longLabel ENCODE IsoSeq
type bam
bigDataUrl encode-lrRNA/ENCSR044ARQ.bam
visibility hide
html ../html/empty.html
group h9project
track NCGM_brain_DRP010077
shortLabel NCGM Brain IsoSeq
longLabel NCGM Brain IsoSeq
type bam
bigDataUrl lrRNA/NCGM-brain-DRP010077/t2t_h9_v01_hap2.NCGM-brain-DRP010077.bam
visibility hide
html ../html/empty.html
group h9project
track mirnas
shortLabel miRNAs
longLabel
superTrack on hide
group genes
track mirGeneDb_blast
shortLabel mirGeneDb BLAST
longLabel mirGeneDb BLAST
type bigPsl
bigDataUrl miRNA-blast/t2t_h9_v01_hap2.mirGeneDb.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
group genes
html ../html/empty.html
priority 10.1
color 0,100,120
canPack on
parent mirnas
track mirna_pre100pct
shortLabel pre-miRNA 100%
longLabel precursor-miRNA 100%
type bigPsl
bigDataUrl miRNA-ortho/t2t_h9_v01_hap2.mirbase.mirpre.blastn.100pct.matmir.filtered.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
group genes
color 150,0,32
canPack on
baseColorDrawOpt diffBases
html ../html/empty.html
parent mirnas
track mirna_pre9095pct
shortLabel pre-miRNA 90%
longLabel precursor-miRNA 90%, 95% cover
type bigPsl
bigDataUrl miRNA-ortho/t2t_h9_v01_hap2.mirbase.mirpre.blastn.9095pct.matmir.filtered.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
group genes
color 150,0,32
canPack on
baseColorDrawOpt diffBases
html ../html/empty.html
parent mirnas
track methylation
shortLabel Methylation
longLabel Methylation
superTrack on hide
group regulation
track modkit_methyl
shortLabel Methylation (diploid)
longLabel Methylation (diploid mapping)
type bigMethyl
bigDataUrl modkit/t2t_h9_v01_hap2_clean.bb
visibility hide
html ../html/empty.html
group regulation
parent methylation
track modkit_methyl_wig
shortLabel Methylation density (diploid)
longLabel Methylation density (diploid mapping)
type bigWig
bigDataUrl modkit/t2t_h9_v01_hap2_clean.bw
visibility hide
html ../html/empty.html
group regulation
parent methylation
track atac_seq_peaks
shortLabel ATAC-Seq
longLabel ATAC-Seq
superTrack on hide
type bigBed 5 +
group regulation
color 128,0,0
track atac_seq_peaks_specific
shortLabel ATAC-Seq specific peaks
longLabel ATAC-Seq specific peaks
type bigBed 5 +
bigDataUrl atac-seq-peaks/atac-seq_H9_q20_hap2_specific_peaks.bb
visibility pack
parent atac_seq_peaks
group regulation
html ../html/empty.html
priority 1
track atac_seq_peaks_enriched
shortLabel ATAC-Seq enriched peaks
longLabel ATAC-Seq enriched peaks
type bigBed 5 +
bigDataUrl atac-seq-peaks/atac-seq_H9_q20_hap2_enriched_peaks.bb
visibility pack
parent atac_seq_peaks
group regulation
html ../html/empty.html
priority 2
track hi_c_compartments
shortLabel Hi-C Compartments
longLabel
superTrack on hide
group regulation
track hi_c_ab_10kb
shortLabel Hi-C A/B 10kb
longLabel Hi-C A/B 10kb resolution
type bigWig
bigDataUrl Hi-C-AB/H9_T2T_v0.1_collated.10000.AB.flipped.bw
visibility hide
viewLimits -2.0:2.0
color 92,155,26
group regulation
html ../html/empty.html
parent hi_c_compartments
track hi_c_ab_100kb
shortLabel Hi-C A/B 100kb
longLabel Hi-C A/B 100kb resolution
type bigWig
bigDataUrl Hi-C-AB/H9_T2T_v0.1_collated.100000.AB.flipped.bw
visibility hide
viewLimits -2.0:2.0
color 92,155,26
group regulation
html ../html/empty.html
parent hi_c_compartments
track centeny
shortLabel CENP-B boxes
longLabel CENP-B box annotations
type bigBed 9
bigDataUrl centeny/centeny-hap2-hap1.bb
visibility hide
itemRgb on
group popCmpGenomics
html ../html/empty.html
url /cgi-bin/hgTracks?genome=t2t_h9_v01_hap1&position=$$
urlLabel t2t_h9_v01_hap1:
mouseOver t2t_h9_v01_hap1: ${name}
labelFields name
defaultLabelFields name
priority 20
track hg38_genomic_aln_super
shortLabel GRCh38 Alignments
longLabel GRCh38/hg38 Genomic Alignments
superTrack on hide
group popCmpGenomics
track hs1_genomic_aln_super
shortLabel CHM13 Alignments
longLabel T2T_CHM13 Genomic Alignments
superTrack on hide
group popCmpGenomics
track t2t_h9_v01_hap1_genomic_aln_super
shortLabel H9 hap 1 Alignments
longLabel T2T H9 haplotype 1 Genomic Alignments
superTrack on hide
group popCmpGenomics
track hs1_minimap_chain
shortLabel CHM13 mm2 Alignments
longLabel T2T_CHM13 minimap2 Genomic Alignments
type bigChain hs1
bigDataUrl mm2-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.link.bb
parent hs1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track hs1_minimap_syn_chain
shortLabel CHM13 mm2 syn Alignments
longLabel T2T_CHM13 minimap2 Syntenic Genomic Alignments
type bigChain hs1
bigDataUrl mm2-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.syn.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.syn.link.bb
parent hs1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 11
track hg38_minimap_chain
shortLabel GRCh38 mm2 Alignments
longLabel GRCh38/hg38 minimap2 Genomic Alignments
type bigChain hg38
bigDataUrl mm2-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.link.bb
parent hg38_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track hg38_minimap_syn_chain
shortLabel GRCh38 mm2 syn Alignments
longLabel GRCh38/hg38 minimap2 Syntenic Genomic Alignments
type bigChain hg38
bigDataUrl mm2-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.syn.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.syn.link.bb
parent hg38_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 11
track t2t_h9_v01_hap1_minimap_chain
shortLabel H9 hap 1 mm2 Alignments
longLabel T2T H9 haplotype 1 minimap2 Genomic Alignments
type bigChain t2t_h9_v01_hap1
bigDataUrl mm2-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.link.bb
parent t2t_h9_v01_hap1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track t2t_h9_v01_hap1_minimap_syn_chain
shortLabel H9 hap 1 mm2 syn Alignments
longLabel T2T H9 haplotype 1 minimap2 Syntenic Genomic Alignments
type bigChain t2t_h9_v01_hap1
bigDataUrl mm2-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.syn.chain.bb
visibility hide
linkDataUrl mm2-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.syn.link.bb
parent t2t_h9_v01_hap1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 11
track hs1_cactus_chain
shortLabel CHM13 Cactus Alignments
longLabel T2T_CHM13 Cactus Genomic Alignments
type bigChain hs1
bigDataUrl cactus-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.chain.bb
visibility hide
linkDataUrl cactus-genomic-aln/hs1/t2t_h9_v01_hap2.hs1.link.bb
parent hs1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track hg38_cactus_chain
shortLabel GRCh38 Cactus Alignments
longLabel GRCh38/hg38 Cactus Genomic Alignments
type bigChain hg38
bigDataUrl cactus-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.chain.bb
visibility hide
linkDataUrl cactus-genomic-aln/hg38/t2t_h9_v01_hap2.hg38.link.bb
parent hg38_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track t2t_h9_v01_hap1_cactus_chain
shortLabel H9 hap 1 Cactus Alignments
longLabel T2T H9 haplotype 1 Cactus Genomic Alignments
type bigChain t2t_h9_v01_hap1
bigDataUrl cactus-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.chain.bb
visibility hide
linkDataUrl cactus-genomic-aln/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.link.bb
parent t2t_h9_v01_hap1_genomic_aln_super
group popCmpGenomics
html ../html/empty.html
priority 10
track repeatMasker
shortLabel Repeat Masker
longLabel Repeat Masker
type bigRmsk 9 +
bigDataUrl repeatMasker/t2t_h9_v01_hap2.sorted.fa.out.bb
visibility hide
xrefDataUrl repeatMasker/t2t_h9_v01_hap2.fa.align.bb
group rep
html ../html/empty.html
track simpleRepeat
shortLabel Simple repeats
longLabel Simple repeats
type bigBed 4 +
bigDataUrl simpleRepeat/simpleRepeat.bb
visibility hide
group rep
html ../html/empty.html
track windowMasker
shortLabel Window Masker
longLabel Window Masker
type bigBed 4
bigDataUrl windowMasker/t2t_h9_v01_hap2.windowmasker.bb
visibility hide
labelFields name
defaultLabelFields none
group rep
html ../html/empty.html
track snp_density
shortLabel SNP density
longLabel SNP density hap1
type bigWig
bigDataUrl snp-density/t2t_h9_v01_hap2.hap1.snpdensity.bw
visibility hide
viewLimits 0:0.07
color 92,126,255
group rep
html ../html/empty.html
logo on
track sedefSegDupsSuper
shortLabel Segmental Duplications
longLabel SEDEF Segmental Duplications
superTrack on hide
group rep
track sedefSegDups
shortLabel Segmental Duplications
longLabel SEDEF Segmental Duplications
type bigBed 9 +
bigDataUrl sedef/t2t_h9_v01_hap2.sedef.bb
visibility hide
parent sedefSegDupsSuper
group rep
itemRgb on
labelFields name
defaultLabelFields name
priority 1
url /cgi-bin/hgTracks?genome=$D&position=$:$-$
urlLabel Source locus link
html ../html/sedefSegDups.html
filter.fracMatch 0.0
filterLabel.fracMatch Minimum fraction identity
filter.size 0
filterLabel.size Minimum genomic coverage in bases
filter.span 0
filterLabel.span Minimum genomic span in bases
track sedefSegDupsAnalysis
shortLabel SEDEF Seg Dups PSLs
longLabel SEDEF Segmental Duplications Analysis PSLs
type bigPsl
bigDataUrl sedef/t2t_h9_v01_hap2.sedef.analysis.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
parent sedefSegDupsSuper
group rep
html ../html/empty.html
color 128,92,10
canPack on
labelFields name
defaultLabelFields name
priority 2
track sedef_t2t_h9_v01_hap2_90
shortLabel Sedef t2t_h9_v01_hap2 90%
longLabel Sedef t2t_h9_v01_hap2 90%
type bigBed 12
bigDataUrl sedef-venn/asm/t2t_h9_v01_hap2.sedef.0.90.bb
visibility hide
parent sedefSegDupsFiltSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
priority 11
track sedef_t2t_h9_v01_hap2_98
shortLabel Sedef t2t_h9_v01_hap2 98%
longLabel Sedef t2t_h9_v01_hap2 98%
type bigBed 12
bigDataUrl sedef-venn/asm/t2t_h9_v01_hap2.sedef.0.98.bb
visibility hide
parent sedefSegDupsFiltSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
priority 12
track sedefMappedSegDupsSuper
shortLabel Mapped SegDups
longLabel Mapped Segmental Duplications
superTrack on hide
group rep
priority 100
track sedefSegDupsFiltSuper
shortLabel SegDups Filter
longLabel Segmental Duplications Filtered
superTrack on hide
group rep
priority 110
track segdupVennSuper
shortLabel Segdup Venn
longLabel Segdup Venn Analysis
superTrack on hide
group rep
priority 120
track sedef_map_hs1_dup_mm2
shortLabel Sedef hs1 map
longLabel Sedef hs1 mapped
type bigPsl
bigDataUrl sedef-asm-map/hs1/t2t_h9_v01_hap2.hs1.mm2.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
parent sedefMappedSegDupsSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
labelFields name
defaultLabelFields name
priority 1010
track sedef_map_hs1_90
shortLabel Sedef hs1 map 90%
longLabel Sedef hs1 mapped 90%
type bigBed 12
bigDataUrl sedef-venn/asm/t2t_h9_v01_hap2.hs1.sedef-map.0.90.bb
visibility hide
parent sedefSegDupsFiltSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
priority 1021
track sedef_map_t2t_h9_v01_hap1_dup_mm2
shortLabel Sedef t2t_h9_v01_hap1 map
longLabel Sedef t2t_h9_v01_hap1 mapped
type bigPsl
bigDataUrl sedef-asm-map/t2t_h9_v01_hap1/t2t_h9_v01_hap2.t2t_h9_v01_hap1.mm2.bb
visibility hide
searchIndex name
baseColorUseSequence lfExtra
indelDoubleInsert on
indelQueryInsert on
showDiffBasesAllScales .
showDiffBasesMaxZoom 10000
parent sedefMappedSegDupsSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
labelFields name
defaultLabelFields name
priority 1110
track sedef_map_t2t_h9_v01_hap1_90
shortLabel Sedef t2t_h9_v01_hap1 map 90%
longLabel Sedef t2t_h9_v01_hap1 mapped 90%
type bigBed 12
bigDataUrl sedef-venn/asm/t2t_h9_v01_hap2.t2t_h9_v01_hap1.sedef-map.0.90.bb
visibility hide
parent sedefSegDupsFiltSuper
group rep
html ../html/empty.html
color 128,10,92
canPack on
priority 1121
track segdupVenn90_3-way_full_sets
shortLabel Venn 90 3-way full sets
longLabel Segdup Venn 90% 3-way full sets
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 12100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_3-way_full_sets-trel
shortLabel Venn 90 3-way full sets-trel
longLabel Segdup Venn 90% 3-way full sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 13100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_3-way_full_regions
shortLabel Venn 90 3-way full regions
longLabel Segdup Venn 90% 3-way full regions
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 14100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_3-way_unique_sets
shortLabel Venn 90 3-way unique sets
longLabel Segdup Venn 90% 3-way unique sets
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 15100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_3-way_unique_sets-trel
shortLabel Venn 90 3-way unique sets-trel
longLabel Segdup Venn 90% 3-way unique sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 16100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_3-way_unique_regions
shortLabel Venn 90 3-way unique regions
longLabel Segdup Venn 90% 3-way unique regions
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 17100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_full_sets
shortLabel Venn 90 2-way full sets
longLabel Segdup Venn 90% 2-way full sets
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 18100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_full_sets-trel
shortLabel Venn 90 2-way full sets-trel
longLabel Segdup Venn 90% 2-way full sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 19100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_full_regions
shortLabel Venn 90 2-way full regions
longLabel Segdup Venn 90% 2-way full regions
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.full-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 20100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_unique_sets
shortLabel Venn 90 2-way unique sets
longLabel Segdup Venn 90% 2-way unique sets
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 21100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_unique_sets-trel
shortLabel Venn 90 2-way unique sets-trel
longLabel Segdup Venn 90% 2-way unique sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 22100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn90_2-way_unique_regions
shortLabel Venn 90 2-way unique regions
longLabel Segdup Venn 90% 2-way unique regions
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.90.unique-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 23100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_full_sets
shortLabel Venn 98 3-way full sets
longLabel Segdup Venn 98% 3-way full sets
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 24100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_full_sets-trel
shortLabel Venn 98 3-way full sets-trel
longLabel Segdup Venn 98% 3-way full sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 25100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_full_regions
shortLabel Venn 98 3-way full regions
longLabel Segdup Venn 98% 3-way full regions
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 26100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_unique_sets
shortLabel Venn 98 3-way unique sets
longLabel Segdup Venn 98% 3-way unique sets
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 27100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_unique_sets-trel
shortLabel Venn 98 3-way unique sets-trel
longLabel Segdup Venn 98% 3-way unique sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 28100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_3-way_unique_regions
shortLabel Venn 98 3-way unique regions
longLabel Segdup Venn 98% 3-way unique regions
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 29100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_full_sets
shortLabel Venn 98 2-way full sets
longLabel Segdup Venn 98% 2-way full sets
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 30100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_full_sets-trel
shortLabel Venn 98 2-way full sets-trel
longLabel Segdup Venn 98% 2-way full sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 31100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_full_regions
shortLabel Venn 98 2-way full regions
longLabel Segdup Venn 98% 2-way full regions
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.full-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 32100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_unique_sets
shortLabel Venn 98 2-way unique sets
longLabel Segdup Venn 98% 2-way unique sets
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-sets.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 33100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_unique_sets-trel
shortLabel Venn 98 2-way unique sets-trel
longLabel Segdup Venn 98% 2-way unique sets-trel
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-sets-trel.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 34100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVenn98_2-way_unique_regions
shortLabel Venn 98 2-way unique regions
longLabel Segdup Venn 98% 2-way unique regions
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.0.98.unique-regions.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 35100
filterLabel.name Subset
filterValues.name annot,hs1,hap1,hap2,hap1,,hs1,hap2,,hs1,hap1,,hap2,hap1,,hap2,,hs1,union
filterType.name multipleListOr
track segdupVennUniqueDNA_3-way
shortLabel Venn Unique DNA 3-way
longLabel Segdup Venn Unique DNA from chains 3-way
type bigBed 9
bigDataUrl sedef-venn/sets/hs1+t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.unique-dna.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 36101
track segdupVennUniqueDNA_2-way
shortLabel Venn Unique DNA 2-way
longLabel Segdup Venn Unique DNA from chains 2-way
type bigBed 9
bigDataUrl sedef-venn/sets/t2t_h9_v01_hap1+t2t_h9_v01_hap2/t2t_h9_v01_hap2.unique-dna.bb
visibility hide
parent segdupVennSuper
group rep
itemRgb on
html ../html/empty.html
priority 37101
track ONT_2023
shortLabel ONT_2023
longLabel ONT_2023
type bam
bigDataUrl h9_ont_2023/t2t_h9_v01_hap2.h9_ont_2023.bam
visibility hide
html ../html/empty.html
group h9project