{
  "version": "1.9.0",
  "shape": [100, 147, 9],
  "channels": [1, 2, 3, 4, 5, 6, 7, 9, 10],
  "flags_for_calling": {
    "parse_sam_aux_fields": true,
    "sort_by_haplotypes": true,
    "phase_reads": true,
    "realign_reads": false,
    "vsc_min_fraction_indels": 0.12,
    "alt_aligned_pileup": "diff_channels",
    "trim_reads_for_pileup": true,
    "pileup_image_height": 100,
    "pileup_image_width": 147,
    "min_mapping_quality": 0,
    "track_ref_reads": true,
    "partition_size": 25000,
    "normalize_reads": true,
    "keep_legacy_allele_counter_behavior": false
  }
}