contig	len	genome	aln	ident	1:1-aln	1:1-ident	aln-bp	ident-bp	1:1-aln-bp	1:1-ident-bp
GCA_028885655.2.CM054679.2	233795519	GCA_028858775.2	0.9086	0.9674	0.8703	0.9676	212437981	205504979	203467361	196871588
GCA_028885655.2.CM054679.2	233795519	GCA_028878055.2	0.8704	0.9609	0.8382	0.9613	203498897	195546318	195978721	188403045
GCA_028885655.2.CM054679.2	233795519	GCA_028885625.2	0.9763	0.9952	0.9451	0.9952	228243840	227151445	220969781	219910958
GCA_028885655.2.CM054679.2	233795519	GCA_028885655.2	0.9883	1.0000	0.9583	1.0000	231070438	231070438	224041408	224041408
GCA_028885655.2.CM054679.2	233795519	GCA_029281585.2	0.9123	0.9668	0.8708	0.9670	213302199	206229663	203588586	196880271
GCA_028885655.2.CM054679.2	233795519	GCA_029289425.2	0.9083	0.9673	0.8689	0.9676	212366605	205431637	203154672	196566242
GCA_028885655.2.CM054679.2	233795519	hg38	0.9089	0.9675	0.8623	0.9678	212486082	205577873	201605367	195103930
GCA_028885655.2.CM054679.2	233795519	hs1	0.9093	0.9675	0.8710	0.9677	212583219	205665034	203642321	197067692
GCA_028885655.2.CM054682.2	212916775	GCA_028858775.2	0.8462	0.9660	0.8082	0.9661	180160778	174034047	172082822	166250778
GCA_028885655.2.CM054682.2	212916775	GCA_028878055.2	0.8108	0.9597	0.7762	0.9601	172630161	165676114	165264657	158672540
GCA_028885655.2.CM054682.2	212916775	GCA_028885625.2	0.9077	0.9945	0.8749	0.9945	193273896	192218756	186277057	185247403
GCA_028885655.2.CM054682.2	212916775	GCA_028885655.2	0.9179	1.0000	0.8865	1.0000	195443678	195443678	188744881	188744881
GCA_028885655.2.CM054682.2	212916775	GCA_029281585.2	0.8500	0.9656	0.8117	0.9656	180979405	174745692	172817707	166879819
GCA_028885655.2.CM054682.2	212916775	GCA_029289425.2	0.8461	0.9660	0.8079	0.9661	180142680	174016877	172009278	166179196
GCA_028885655.2.CM054682.2	212916775	hg38	0.8483	0.9662	0.8039	0.9663	180619275	174514459	171154583	165390620
GCA_028885655.2.CM054682.2	212916775	hs1	0.8482	0.9662	0.8120	0.9663	180603937	174497278	172885385	167057157
GCA_028885655.2.CM054683.2	190378904	GCA_028858775.2	0.8764	0.9668	0.8552	0.9669	166847928	161304591	162818451	157427296
GCA_028885655.2.CM054683.2	190378904	GCA_028878055.2	0.8445	0.9602	0.8258	0.9604	160781332	154376747	157208700	150979992
GCA_028885655.2.CM054683.2	190378904	GCA_028885625.2	0.9427	0.9952	0.9274	0.9952	179470487	178605273	176556055	175706854
GCA_028885655.2.CM054683.2	190378904	GCA_028885655.2	0.9548	1.0000	0.9407	1.0000	181770810	181770810	179083834	179083834
GCA_028885655.2.CM054683.2	190378904	GCA_029281585.2	0.8796	0.9663	0.8588	0.9664	167456792	161810620	163501019	158011980
GCA_028885655.2.CM054683.2	190378904	GCA_029289425.2	0.8762	0.9668	0.8536	0.9669	166807523	161265739	162507044	157127708
GCA_028885655.2.CM054683.2	190378904	hg38	0.8783	0.9669	0.8477	0.9671	167208850	161679420	161388468	156079658
GCA_028885655.2.CM054683.2	190378904	hs1	0.8784	0.9669	0.8575	0.9670	167221198	161688764	163249555	157869175
GCA_028885655.2.CM054684.2	172605363	GCA_028858775.2	0.9269	0.9671	0.8967	0.9672	159981307	154725110	154777159	149696765
GCA_028885655.2.CM054684.2	172605363	GCA_028878055.2	0.8909	0.9608	0.8726	0.9610	153777216	147745201	150615303	144748288
GCA_028885655.2.CM054684.2	172605363	GCA_028885625.2	0.9833	0.9947	0.9700	0.9948	169729061	168837395	167431140	166556613
GCA_028885655.2.CM054684.2	172605363	GCA_028885655.2	0.9928	1.0000	0.9804	1.0000	171369082	171369082	169221539	169221539
GCA_028885655.2.CM054684.2	172605363	GCA_029281585.2	0.9298	0.9667	0.9007	0.9667	160492222	155152168	155472603	150301486
GCA_028885655.2.CM054684.2	172605363	GCA_029289425.2	0.9265	0.9671	0.8954	0.9672	159913092	154656974	154555880	149481066
GCA_028885655.2.CM054684.2	172605363	hg38	0.9279	0.9674	0.8754	0.9674	160169049	154947476	151099580	146180434
GCA_028885655.2.CM054684.2	172605363	hs1	0.9278	0.9673	0.9081	0.9673	160142542	154907823	156739907	151621448
GCA_028885655.2.CM054685.2	156966991	GCA_028858775.2	0.9235	0.9658	0.8509	0.9661	144951887	139996302	133556530	129035239
GCA_028885655.2.CM054685.2	156966991	GCA_028878055.2	0.9083	0.9591	0.8473	0.9602	142567379	136734215	132995987	127707697
GCA_028885655.2.CM054685.2	156966991	GCA_028885625.2	0.9874	0.9957	0.9207	0.9960	154991808	154329165	144526630	143952784
GCA_028885655.2.CM054685.2	156966991	GCA_028885655.2	0.9983	1.0000	0.9359	1.0000	156695717	156695717	146905629	146905629
GCA_028885655.2.CM054685.2	156966991	GCA_029281585.2	0.9288	0.9653	0.8546	0.9656	145793182	140731963	134145812	129537900
GCA_028885655.2.CM054685.2	156966991	GCA_029289425.2	0.9231	0.9658	0.8489	0.9662	144890845	139935222	133246807	128737948
GCA_028885655.2.CM054685.2	156966991	hg38	0.9242	0.9660	0.8439	0.9664	145070696	140132943	132470917	128022974
GCA_028885655.2.CM054685.2	156966991	hs1	0.9246	0.9659	0.8537	0.9663	145130807	140188331	134002477	129489737
GCA_028885655.2.CM054686.2	161631396	GCA_028858775.2	0.8525	0.9648	0.8077	0.9652	137798343	132954441	130544787	125996458
GCA_028885655.2.CM054686.2	161631396	GCA_028878055.2	0.8249	0.9581	0.7874	0.9587	133323971	127736620	127266463	122016471
GCA_028885655.2.CM054686.2	161631396	GCA_028885625.2	0.9486	0.9937	0.8834	0.9938	153323773	152360316	142777528	141896811
GCA_028885655.2.CM054686.2	161631396	GCA_028885655.2	0.9696	1.0000	0.8948	1.0000	156724158	156724158	144625926	144625926
GCA_028885655.2.CM054686.2	161631396	GCA_029281585.2	0.8569	0.9645	0.8155	0.9647	138494217	133578150	131802530	127152194
GCA_028885655.2.CM054686.2	161631396	GCA_029289425.2	0.8520	0.9649	0.8068	0.9652	137707710	132868408	130408255	125867252
GCA_028885655.2.CM054686.2	161631396	hg38	0.8549	0.9650	0.7940	0.9655	138184711	133345736	128331819	123903730
GCA_028885655.2.CM054686.2	161631396	hs1	0.8550	0.9650	0.8145	0.9653	138190823	133349108	131646883	127072183
GCA_028885655.2.CM054687.2	140854135	GCA_028858775.2	0.8816	0.9654	0.8271	0.9654	124172777	119873049	116497099	112471986
GCA_028885655.2.CM054687.2	140854135	GCA_028878055.2	0.8589	0.9592	0.8066	0.9596	120978520	116041071	113607258	109021135
GCA_028885655.2.CM054687.2	140854135	GCA_028885625.2	0.9460	0.9948	0.8945	0.9948	133245960	132554679	125990184	125328996
GCA_028885655.2.CM054687.2	140854135	GCA_028885655.2	0.9594	1.0000	0.9090	1.0000	135137215	135137215	128037554	128037554
GCA_028885655.2.CM054687.2	140854135	GCA_029281585.2	0.8874	0.9649	0.8317	0.9649	124993526	120600760	117149205	113034326
GCA_028885655.2.CM054687.2	140854135	GCA_029289425.2	0.8812	0.9654	0.8254	0.9655	124117456	119818074	116261206	112244397
GCA_028885655.2.CM054687.2	140854135	hg38	0.8846	0.9655	0.8259	0.9655	124595060	120291151	116326628	112317611
GCA_028885655.2.CM054687.2	140854135	hs1	0.8847	0.9654	0.8288	0.9655	124613060	120306372	116738067	112712520
GCA_028885655.2.CM054688.2	138471021	GCA_028858775.2	0.8806	0.9663	0.8368	0.9667	121931855	117818432	115868094	112005095
GCA_028885655.2.CM054688.2	138471021	GCA_028878055.2	0.8539	0.9599	0.8112	0.9604	118233492	113488599	112334582	107890943
GCA_028885655.2.CM054688.2	138471021	GCA_028885625.2	0.9761	0.9932	0.9178	0.9938	135158873	134242320	127092638	126301879
GCA_028885655.2.CM054688.2	138471021	GCA_028885655.2	0.9871	1.0000	0.9325	1.0000	136685308	136685308	129120916	129120916
GCA_028885655.2.CM054688.2	138471021	GCA_029281585.2	0.8866	0.9657	0.8377	0.9662	122763411	118558550	115994456	112074507
GCA_028885655.2.CM054688.2	138471021	GCA_029289425.2	0.8793	0.9663	0.8342	0.9667	121755118	117646967	115516857	111665019
GCA_028885655.2.CM054688.2	138471021	hg38	0.8826	0.9664	0.8251	0.9669	122213918	118105799	114252452	110472097
GCA_028885655.2.CM054688.2	138471021	hs1	0.8831	0.9664	0.8368	0.9667	122279115	118164841	115867694	112014306
GCA_028885655.2.CM054689.2	132281717	GCA_028858775.2	0.9363	0.9667	0.9117	0.9668	123858229	119732791	120602322	116600436
GCA_028885655.2.CM054689.2	132281717	GCA_028878055.2	0.9010	0.9603	0.8767	0.9608	119187729	114453025	115970573	111425831
GCA_028885655.2.CM054689.2	132281717	GCA_028885625.2	0.9917	0.9960	0.9710	0.9963	131183485	130661078	128441396	127960854
GCA_028885655.2.CM054689.2	132281717	GCA_028885655.2	0.9986	1.0000	0.9790	1.0000	132093620	132093620	129505212	129505212
GCA_028885655.2.CM054689.2	132281717	GCA_029281585.2	0.9401	0.9662	0.9172	0.9664	124360116	120158959	121330986	117250005
GCA_028885655.2.CM054689.2	132281717	GCA_029289425.2	0.9356	0.9667	0.9090	0.9669	123764340	119643129	120250446	116264570
GCA_028885655.2.CM054689.2	132281717	hg38	0.9372	0.9669	0.9026	0.9671	123976629	119877590	119401467	115471376
GCA_028885655.2.CM054689.2	132281717	hs1	0.9374	0.9669	0.9144	0.9670	123996026	119893315	120952511	116966687
GCA_028885655.2.CM054690.2	146197178	GCA_028858775.2	0.8449	0.9670	0.8231	0.9673	123517880	119438654	120333125	116403741
GCA_028885655.2.CM054690.2	146197178	GCA_028878055.2	0.8289	0.9610	0.8082	0.9614	121185752	116454463	118152079	113592214
GCA_028885655.2.CM054690.2	146197178	GCA_028885625.2	0.9634	0.9935	0.8784	0.9957	140848380	139930620	128420783	127872985
GCA_028885655.2.CM054690.2	146197178	GCA_028885655.2	0.9888	1.0000	0.8887	1.0000	144555932	144555932	129930951	129930951
GCA_028885655.2.CM054690.2	146197178	GCA_029281585.2	0.8497	0.9663	0.8276	0.9669	124219394	120033975	120986876	116982759
GCA_028885655.2.CM054690.2	146197178	GCA_029289425.2	0.8442	0.9670	0.8219	0.9674	123425725	119348295	120154925	116233302
GCA_028885655.2.CM054690.2	146197178	hg38	0.8451	0.9670	0.8207	0.9676	123554436	119478894	119980613	116087852
GCA_028885655.2.CM054690.2	146197178	hs1	0.8452	0.9670	0.8251	0.9675	123571272	119495234	120629904	116710534
GCA_028885655.2.CM054691.2	133183124	GCA_028858775.2	0.7872	0.9660	0.7303	0.9665	104846022	101277641	97263830	94009199
GCA_028885655.2.CM054691.2	133183124	GCA_028878055.2	0.7712	0.9597	0.7142	0.9605	102716232	98578829	95114924	91355753
GCA_028885655.2.CM054691.2	133183124	GCA_028885625.2	0.9266	0.9922	0.7931	0.9945	123407539	122448090	105625530	105049290
GCA_028885655.2.CM054691.2	133183124	GCA_028885655.2	0.9648	1.0000	0.8183	1.0000	128490404	128490404	108981511	108981511
GCA_028885655.2.CM054691.2	133183124	GCA_029281585.2	0.7975	0.9652	0.7359	0.9661	106214814	102517501	98003990	94683305
GCA_028885655.2.CM054691.2	133183124	GCA_029289425.2	0.7906	0.9659	0.7317	0.9665	105294894	101702548	97451734	94187945
GCA_028885655.2.CM054691.2	133183124	hg38	0.7920	0.9659	0.7254	0.9667	105485458	101886571	96605389	93386409
GCA_028885655.2.CM054691.2	133183124	hs1	0.7913	0.9659	0.7291	0.9666	105383437	101785303	97097462	93855433
GCA_028885655.2.CM054692.2	129618170	GCA_028858775.2	0.8216	0.9672	0.7742	0.9675	106496908	103005935	100344893	97086749
GCA_028885655.2.CM054692.2	129618170	GCA_028878055.2	0.8082	0.9596	0.7607	0.9601	104762297	100529769	98595158	94660876
GCA_028885655.2.CM054692.2	129618170	GCA_028885625.2	0.9395	0.9925	0.8438	0.9946	121776853	120864396	109366737	108774330
GCA_028885655.2.CM054692.2	129618170	GCA_028885655.2	0.9793	1.0000	0.8719	1.0000	126935157	126935157	113011886	113011886
GCA_028885655.2.CM054692.2	129618170	GCA_029281585.2	0.8321	0.9670	0.7780	0.9674	107853032	104293812	100847050	97558619
GCA_028885655.2.CM054692.2	129618170	GCA_029289425.2	0.8211	0.9672	0.7733	0.9675	106424412	102937505	100237715	96984723
GCA_028885655.2.CM054692.2	129618170	hg38	0.8288	0.9674	0.7722	0.9678	107428693	103931829	100095489	96874319
GCA_028885655.2.CM054692.2	129618170	hs1	0.8292	0.9674	0.7789	0.9678	107480100	103979683	100960843	97711410
GCA_028885655.2.CM054693.2	120579848	GCA_028858775.2	0.7813	0.9661	0.7263	0.9664	94209446	91012621	87582863	84642877
GCA_028885655.2.CM054693.2	120579848	GCA_028878055.2	0.7596	0.9600	0.6999	0.9605	91595457	87928353	84399308	81061618
GCA_028885655.2.CM054693.2	120579848	GCA_028885625.2	0.9259	0.9915	0.7836	0.9945	111646459	110697781	94481074	93962881
GCA_028885655.2.CM054693.2	120579848	GCA_028885655.2	0.9663	1.0000	0.8024	1.0000	116517447	116517447	96747259	96747259
GCA_028885655.2.CM054693.2	120579848	GCA_029281585.2	0.7865	0.9656	0.7205	0.9659	94840982	91577380	86877662	83916494
GCA_028885655.2.CM054693.2	120579848	GCA_029289425.2	0.7819	0.9661	0.7265	0.9664	94276995	91076325	87605365	84662632
GCA_028885655.2.CM054693.2	120579848	hg38	0.7816	0.9663	0.7210	0.9667	94241292	91065567	86939165	84042940
GCA_028885655.2.CM054693.2	120579848	hs1	0.7829	0.9663	0.7285	0.9666	94406221	91222534	87847784	84914290
GCA_028885655.2.CM054694.2	111741659	GCA_028858775.2	0.7591	0.9662	0.7213	0.9672	84826895	81963494	80603880	77956778
GCA_028885655.2.CM054694.2	111741659	GCA_028878055.2	0.7244	0.9598	0.6933	0.9608	80944164	77690022	77469471	74436523
GCA_028885655.2.CM054694.2	111741659	GCA_028885625.2	0.9256	0.9910	0.7887	0.9946	103426776	102499585	88126266	87654231
GCA_028885655.2.CM054694.2	111741659	GCA_028885655.2	0.9700	1.0000	0.8078	1.0000	108384379	108384379	90265769	90265769
GCA_028885655.2.CM054694.2	111741659	GCA_029281585.2	0.7639	0.9655	0.7201	0.9666	85360321	82411972	80460684	77776911
GCA_028885655.2.CM054694.2	111741659	GCA_029289425.2	0.7603	0.9662	0.7236	0.9671	84957744	82089304	80861112	78203908
GCA_028885655.2.CM054694.2	111741659	hg38	0.7641	0.9664	0.7086	0.9673	85387092	82516842	79177286	76591947
GCA_028885655.2.CM054694.2	111741659	hs1	0.7643	0.9664	0.7280	0.9673	85405626	82533564	81346536	78682608
GCA_028885655.2.CM054695.2	105333845	GCA_028858775.2	0.7806	0.9647	0.6700	0.9669	82228748	79329863	70578720	68240380
GCA_028885655.2.CM054695.2	105333845	GCA_028878055.2	0.7752	0.9592	0.6605	0.9611	81659508	78326772	69569335	66861327
GCA_028885655.2.CM054695.2	105333845	GCA_028885625.2	0.9411	0.9918	0.7247	0.9946	99124465	98307968	76334975	75923930
GCA_028885655.2.CM054695.2	105333845	GCA_028885655.2	0.9758	1.0000	0.7445	1.0000	102785922	102785922	78422925	78422925
GCA_028885655.2.CM054695.2	105333845	GCA_029281585.2	0.7873	0.9644	0.6693	0.9664	82931963	79979577	70496094	68124989
GCA_028885655.2.CM054695.2	105333845	GCA_029289425.2	0.7820	0.9648	0.6698	0.9669	82376283	79474843	70557835	68221127
GCA_028885655.2.CM054695.2	105333845	hg38	0.7812	0.9651	0.6356	0.9670	82291053	79416774	66946626	64737680
GCA_028885655.2.CM054695.2	105333845	hs1	0.7812	0.9650	0.6697	0.9669	82281683	79404092	70541051	68208848
GCA_028885655.2.CM054696.2	95460129	GCA_028858775.2	0.7585	0.9655	0.7296	0.9662	72402831	69903439	69645898	67293516
GCA_028885655.2.CM054696.2	95460129	GCA_028878055.2	0.7411	0.9595	0.7146	0.9604	70743588	67882003	68212992	65513537
GCA_028885655.2.CM054696.2	95460129	GCA_028885625.2	0.9044	0.9896	0.7899	0.9934	86338277	85438799	75401261	74907181
GCA_028885655.2.CM054696.2	95460129	GCA_028885655.2	0.9463	1.0000	0.8128	1.0000	90335561	90335561	77593310	77593310
GCA_028885655.2.CM054696.2	95460129	GCA_029281585.2	0.7638	0.9646	0.7342	0.9657	72917098	70338451	70090752	67686415
GCA_028885655.2.CM054696.2	95460129	GCA_029289425.2	0.7589	0.9655	0.7258	0.9662	72442487	69940438	69289570	66948671
GCA_028885655.2.CM054696.2	95460129	hg38	0.7584	0.9655	0.7197	0.9664	72399593	69904899	68701936	66394836
GCA_028885655.2.CM054696.2	95460129	hs1	0.7588	0.9655	0.7313	0.9663	72435247	69938659	69811339	67460637
GCA_028885655.2.CM054697.2	89553113	GCA_028858775.2	0.8418	0.9615	0.7304	0.9628	75389893	72490388	65407092	62971154
GCA_028885655.2.CM054697.2	89553113	GCA_028878055.2	0.8280	0.9544	0.7269	0.9554	74151235	70772608	65099755	62197407
GCA_028885655.2.CM054697.2	89553113	GCA_028885625.2	0.9228	0.9951	0.8038	0.9955	82639458	82235781	71986902	71660505
GCA_028885655.2.CM054697.2	89553113	GCA_028885655.2	0.9358	1.0000	0.8118	1.0000	83801340	83801340	72702486	72702486
GCA_028885655.2.CM054697.2	89553113	GCA_029281585.2	0.8506	0.9609	0.7309	0.9623	76175059	73194507	65453966	62988732
GCA_028885655.2.CM054697.2	89553113	GCA_029289425.2	0.8420	0.9617	0.7279	0.9628	75402022	72512988	65187688	62761263
GCA_028885655.2.CM054697.2	89553113	hg38	0.8426	0.9613	0.7191	0.9628	75453308	72534765	64400684	62002075
GCA_028885655.2.CM054697.2	89553113	hs1	0.8417	0.9613	0.7323	0.9627	75373815	72455356	65582114	63136085
GCA_028885655.2.CM054698.2	98669288	GCA_028858775.2	0.8258	0.9649	0.6826	0.9653	81478943	78619709	67355945	65018693
GCA_028885655.2.CM054698.2	98669288	GCA_028878055.2	0.7958	0.9573	0.6501	0.9586	78519002	75166798	64142159	61485679
GCA_028885655.2.CM054698.2	98669288	GCA_028885625.2	0.9296	0.9942	0.7524	0.9938	91720626	91184286	74238646	73777134
GCA_028885655.2.CM054698.2	98669288	GCA_028885655.2	0.9478	1.0000	0.7686	1.0000	93519111	93519111	75833709	75833709
GCA_028885655.2.CM054698.2	98669288	GCA_029281585.2	0.8342	0.9649	0.6863	0.9649	82305166	79416267	67720845	65344016
GCA_028885655.2.CM054698.2	98669288	GCA_029289425.2	0.8254	0.9650	0.6802	0.9653	81441274	78593037	67118807	64789333
GCA_028885655.2.CM054698.2	98669288	hg38	0.8274	0.9650	0.6352	0.9655	81640050	78785043	62673903	60509759
GCA_028885655.2.CM054698.2	98669288	hs1	0.8277	0.9650	0.6833	0.9654	81666857	78808075	67420502	65089361
GCA_028885655.2.CM054699.2	65400147	GCA_028858775.2	0.7807	0.9609	0.7166	0.9613	51059546	49065248	46867912	45054398
GCA_028885655.2.CM054699.2	65400147	GCA_028878055.2	0.7473	0.9526	0.6839	0.9538	48874737	46558952	44724696	42657158
GCA_028885655.2.CM054699.2	65400147	GCA_028885625.2	0.8871	0.9929	0.8236	0.9928	58016145	57606530	53863304	53475987
GCA_028885655.2.CM054699.2	65400147	GCA_028885655.2	0.9018	1.0000	0.8434	1.0000	58976983	58976983	55158722	55158722
GCA_028885655.2.CM054699.2	65400147	GCA_029281585.2	0.7892	0.9603	0.7232	0.9607	51611864	49560945	47300513	45443092
GCA_028885655.2.CM054699.2	65400147	GCA_029289425.2	0.7815	0.9609	0.7166	0.9613	51109899	49113723	46864524	45049786
GCA_028885655.2.CM054699.2	65400147	hg38	0.7878	0.9611	0.7034	0.9616	51520018	49514514	46000306	44235663
GCA_028885655.2.CM054699.2	65400147	hs1	0.7889	0.9610	0.7253	0.9614	51594867	49584163	47436773	45605575
GCA_028885655.2.CM054700.2	68750668	GCA_028858775.2	0.8293	0.9655	0.8053	0.9658	57015633	55049747	55361567	53469605
GCA_028885655.2.CM054700.2	68750668	GCA_028878055.2	0.8152	0.9591	0.7901	0.9596	56045549	53755564	54321312	52127006
GCA_028885655.2.CM054700.2	68750668	GCA_028885625.2	0.9020	0.9942	0.8804	0.9942	62011874	61654298	60530822	60178440
GCA_028885655.2.CM054700.2	68750668	GCA_028885655.2	0.9189	1.0000	0.8981	1.0000	63176385	63176385	61746761	61746761
GCA_028885655.2.CM054700.2	68750668	GCA_029281585.2	0.8348	0.9651	0.8112	0.9654	57396119	55394305	55769161	53837502
GCA_028885655.2.CM054700.2	68750668	GCA_029289425.2	0.8294	0.9655	0.8038	0.9658	57020353	55053558	55258819	53370122
GCA_028885655.2.CM054700.2	68750668	hg38	0.8323	0.9656	0.8025	0.9660	57224089	55257726	55172643	53298104
GCA_028885655.2.CM054700.2	68750668	hs1	0.8330	0.9656	0.8102	0.9659	57268391	55297558	55702400	53802859
GCA_028885655.2.CM054701.2	57143103	GCA_028858775.2	0.5810	0.9624	0.5332	0.9636	33200980	31952265	30470330	29362162
GCA_028885655.2.CM054701.2	57143103	GCA_028878055.2	0.5458	0.9572	0.5040	0.9586	31187402	29853526	28801995	27611012
GCA_028885655.2.CM054701.2	57143103	GCA_028885625.2	0.7831	0.9881	0.5902	0.9932	44745936	44215440	33727870	33499022
GCA_028885655.2.CM054701.2	57143103	GCA_028885655.2	0.8380	1.0000	0.6158	1.0000	47883240	47883240	35190295	35190295
GCA_028885655.2.CM054701.2	57143103	GCA_029281585.2	0.5914	0.9611	0.5384	0.9631	33792919	32477774	30766824	29632063
GCA_028885655.2.CM054701.2	57143103	GCA_029289425.2	0.5801	0.9624	0.5318	0.9636	33148596	31901332	30389661	29284566
GCA_028885655.2.CM054701.2	57143103	hg38	0.5892	0.9621	0.5184	0.9638	33667269	32389947	29620203	28549363
GCA_028885655.2.CM054701.2	57143103	hs1	0.5894	0.9621	0.5408	0.9638	33680473	32403976	30902452	29783323
GCA_028885655.2.CM054702.2	162586321	GCA_028858775.2	0.8581	0.9707	0.7912	0.9714	139507767	135424573	128645030	124960375
GCA_028885655.2.CM054702.2	162586321	GCA_028878055.2	0.8063	0.9647	0.7438	0.9659	131097176	126463037	120938561	116809202
GCA_028885655.2.CM054702.2	162586321	GCA_028885625.2	0.9485	0.9960	0.8877	0.9961	154213224	153602957	144326399	143762030
GCA_028885655.2.CM054702.2	162586321	GCA_028885655.2	0.9621	1.0000	0.9012	1.0000	156422382	156422382	146519889	146519889
GCA_028885655.2.CM054702.2	162586321	GCA_029281585.2	0.8675	0.9703	0.8007	0.9709	141040258	136856101	130178095	126392025
GCA_028885655.2.CM054702.2	162586321	GCA_029289425.2	0.8583	0.9707	0.7913	0.9713	139548671	135462699	128650971	124959828
GCA_028885655.2.CM054702.2	162586321	hg38	0.8624	0.9709	0.7754	0.9715	140213575	136140239	126071325	122473214
GCA_028885655.2.CM054702.2	162586321	hs1	0.8628	0.9709	0.7766	0.9714	140281475	136201290	126262843	122654242
GCA_028885655.2.CM054703.2	67827326	GCA_028858775.2	0.2018	0.9288	0.0507	0.9361	13688327	12713739	3438810	3218948
GCA_028885655.2.CM054703.2	67827326	GCA_028878055.2	0.1875	0.9181	0.0417	0.9341	12720929	11678810	2829762	2643157
GCA_028885655.2.CM054703.2	67827326	GCA_028885625.2	0.7111	0.9834	0.2466	0.9709	48231274	47430572	16727284	16240108
GCA_028885655.2.CM054703.2	67827326	GCA_028885655.2	0.7765	1.0000	0.2891	1.0000	52666559	52666559	19609624	19609624
GCA_028885655.2.CM054703.2	67827326	GCA_029281585.2	0.2289	0.9262	0.0503	0.9352	15526451	14380326	3411332	3190174
GCA_028885655.2.CM054703.2	67827326	GCA_029289425.2	0.2033	0.9290	0.0513	0.9357	13787843	12808979	3479050	3255443
GCA_028885655.2.CM054703.2	67827326	hg38	0.2127	0.9307	0.0562	0.9358	14424937	13424878	3810604	3566037
GCA_028885655.2.CM054703.2	67827326	hs1	0.2127	0.9308	0.0562	0.9357	14427512	13429002	3812016	3567027
GCA_028885655.2.CM068843.1	209544987	GCA_028858775.2	0.8934	0.9671	0.8687	0.9672	187215534	181063000	182033744	176064021
GCA_028885655.2.CM068843.1	209544987	GCA_028878055.2	0.8672	0.9607	0.8401	0.9609	181712674	174572902	176033018	169157431
GCA_028885655.2.CM068843.1	209544987	GCA_028885625.2	0.9422	0.9959	0.9152	0.9962	197437888	196619343	191782798	191050813
GCA_028885655.2.CM068843.1	209544987	GCA_028885655.2	0.9522	1.0000	0.9237	1.0000	199538114	199538114	193548980	193548980
GCA_028885655.2.CM068843.1	209544987	GCA_029281585.2	0.8957	0.9667	0.8712	0.9668	187694250	181446011	182549619	176481970
GCA_028885655.2.CM068843.1	209544987	GCA_029289425.2	0.8927	0.9671	0.8660	0.9672	187062372	180913614	181460593	175509609
GCA_028885655.2.CM068843.1	209544987	hg38	0.8936	0.9673	0.8645	0.9674	187243514	181114060	181153331	175238722
GCA_028885655.2.CM068843.1	209544987	hs1	0.8932	0.9673	0.8689	0.9673	187171712	181042242	182076874	176126649
GCA_028885655.2.CM068844.1	57593421	GCA_028858775.2	0.5791	0.9604	0.4977	0.9627	33350026	32028119	28661577	27591083
GCA_028885655.2.CM068844.1	57593421	GCA_028878055.2	0.5616	0.9550	0.4822	0.9571	32343912	30887544	27771461	26579392
GCA_028885655.2.CM068844.1	57593421	GCA_028885625.2	0.8901	0.9828	0.5870	0.9906	51261648	50380974	33808844	33490807
GCA_028885655.2.CM068844.1	57593421	GCA_028885655.2	0.9423	1.0000	0.6198	1.0000	54272290	54272290	35697218	35697218
GCA_028885655.2.CM068844.1	57593421	GCA_029281585.2	0.5895	0.9594	0.4966	0.9624	33949697	32570248	28602466	27526108
GCA_028885655.2.CM068844.1	57593421	GCA_029289425.2	0.5795	0.9605	0.4969	0.9627	33373518	32054208	28618112	27549462
GCA_028885655.2.CM068844.1	57593421	hg38	0.5811	0.9601	0.4850	0.9627	33466189	32131216	27931953	26891319
GCA_028885655.2.CM068844.1	57593421	hs1	0.5815	0.9601	0.5006	0.9628	33488697	32153548	28832933	27759991
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_028858775.2	0.7413	0.9627	0.0000	0.0000	164209	158089	0	0
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_028878055.2	0.6040	0.9406	0.0000	0.0000	133790	125840	0	0
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_028885625.2	0.8829	0.9934	0.0000	1.0000	195570	194276	2	2
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_028885655.2	0.9543	1.0000	0.0054	1.0000	211396	211396	1204	1204
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_029281585.2	0.7422	0.9638	0.0000	0.0000	164408	158453	0	0
GCA_028885655.2.JAQQLQ020000019.1	221508	GCA_029289425.2	0.7413	0.9627	0.0000	0.0000	164205	158078	0	0
GCA_028885655.2.JAQQLQ020000019.1	221508	hg38	0.7409	0.9628	0.0000	0.0000	164125	158013	0	0
GCA_028885655.2.JAQQLQ020000019.1	221508	hs1	0.7409	0.9628	0.0000	0.0000	164109	158006	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_028858775.2	0.7811	0.9611	0.0000	0.0000	104043	100000	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_028878055.2	0.6913	0.9367	0.0000	0.0000	92085	86254	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_028885625.2	0.9271	0.9915	0.0026	0.8065	123490	122435	341	275
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_028885655.2	1.0000	1.0000	0.0026	1.0000	133200	133200	346	346
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_029281585.2	0.7815	0.9618	0.0000	0.0000	104095	100122	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	GCA_029289425.2	0.7810	0.9612	0.0000	0.0000	104029	99992	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	hg38	0.7818	0.9616	0.0000	0.0000	104142	100138	0	0
GCA_028885655.2.JAQQLQ020000020.1	133200	hs1	0.7819	0.9614	0.0000	0.0000	104144	100123	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_028858775.2	0.4921	0.9336	0.0000	0.0000	56699	52932	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_028878055.2	0.2462	0.8507	0.0000	0.0000	28361	24128	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_028885625.2	0.9180	0.9925	0.0156	0.9755	105765	104974	1794	1750
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_028885655.2	1.0000	1.0000	0.0344	1.0000	115212	115212	3967	3967
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_029281585.2	0.4925	0.9358	0.0000	0.0000	56741	53099	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	GCA_029289425.2	0.4921	0.9329	0.0000	0.0000	56696	52890	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	hg38	0.4923	0.9364	0.0000	0.0000	56720	53110	0	0
GCA_028885655.2.JAQQLQ020000021.1	115212	hs1	0.4924	0.9364	0.0000	0.0000	56726	53119	0	0
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_028858775.2	0.6748	0.9604	0.0000	0.0000	202090	194091	0	0
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_028878055.2	0.5361	0.9251	0.0000	0.0000	160551	148524	0	0
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_028885625.2	0.8766	0.9947	0.0102	0.9902	262506	261105	3065	3035
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_028885655.2	0.9929	1.0000	0.0461	1.0000	297322	297322	13799	13799
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_029281585.2	0.6751	0.9610	0.0000	0.0000	202163	194286	0	0
GCA_028885655.2.JAQQLQ020000022.1	299462	GCA_029289425.2	0.6748	0.9606	0.0000	0.0000	202088	194124	0	0
GCA_028885655.2.JAQQLQ020000022.1	299462	hg38	0.6749	0.9614	0.0000	1.0000	202097	194294	1	1
GCA_028885655.2.JAQQLQ020000022.1	299462	hs1	0.6749	0.9614	0.0000	0.0000	202105	194294	0	0
_Total_	3259853530	GCA_028858775.2	0.8323	0.9660	0.7807	0.9666	2713103505	2620787289	2544809841	2459699320
_Total_	3259853530	GCA_028878055.2	0.8055	0.9595	0.7569	0.9604	2625653098	2519282608	2467418230	2369615234
_Total_	3259853530	GCA_028885625.2	0.9375	0.9937	0.8524	0.9947	3056155336	3036760637	2778817106	2764147888
_Total_	3259853530	GCA_028885655.2	0.9589	1.0000	0.8682	1.0000	3126008362	3126008362	2830267510	2830267510
_Total_	3259853530	GCA_029281585.2	0.8384	0.9654	0.7839	0.9661	2732991864	2638521637	2555318833	2468687662
_Total_	3259853530	GCA_029289425.2	0.8323	0.9660	0.7795	0.9666	2713085475	2620771507	2541096926	2456105118
_Total_	3259853530	hg38	0.8346	0.9661	0.7704	0.9668	2720691920	2628471766	2511312738	2427822670
_Total_	3259853530	hs1	0.8348	0.9661	0.7829	0.9667	2721205196	2628900687	2551988626	2466939777