.SECONDARY:

url_cgl = https://cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/hub.txt
udcDir_cgl = /data/tmp/markd/udcCache

genomes = $(shell awk '/^genome/{print $$2}' genomes.txt)

all:  check
check: ${genomes:%=%_check}

%_check:
	${MAKE} doHubCheck genome=$* udcDir=${udcDir_cgl} url=${url_cgl}

check_test: ${genomes:%=%_check_test}

%_check_test:
	${MAKE} doHubCheck genome=$* udcDir=${udcDir_test} url=${url_test}

# recursive target
doHubCheck: ${genome}/trackDb.txt
	hubCheck -genome=${genome} -udcDir=${udcDir}/${genoome} ${url}