ALPHABET: A C G T 
ORDER: 0
SUBST_MOD: REV
TRAINING_LNL: -4505489.979960
BACKGROUND: 0.303101 0.195526 0.195648 0.305724 
RATE_MAT:
  -0.832990    0.160319    0.528099    0.144573 
   0.248523   -1.265509    0.190934    0.826053 
   0.818136    0.190814   -1.257725    0.248775 
   0.143332    0.528303    0.159203   -0.830839 
TREE: ((((Trichechus_manatus:0.0581569,(Loxodonta_africana:0.0658216,(Heterohyrax_brucei:0.0110068,Procavia_capensis:0.0118176):0.147237):0.00651915):0.0259767,((Chrysochloris_asiatica:0.154124,(Microgale_talazaci:0.108511,Echinops_telfairi:0.0597847):0.157346):0.0244079,(Elephantulus_edwardii:0.249078,Orycteropus_afer:0.110775):0.0103598):0.0119182):0.0668902,((Dasypus_novemcinctus:0.0850403,(Chaetophractus_vellerosus:0.0441033,Tolypeutes_matacus:0.0397363):0.0196166):0.0509664,((Choloepus_hoffmanni:0.00469971,Choloepus_didactylus:0.0040501):0.0747461,(Tamandua_tetradactyla:0.0238851,Myrmecophaga_tridactyla:0.0213523):0.0899804):0.0191027):0.0721174):0.0180951,((((Ochotona_princeps:0.207755,(Lepus_americanus:0.0259131,Oryctolagus_cuniculus:0.0249603):0.0872853):0.122484,(((Castor_canadensis:0.139088,(Perognathus_longimembris:0.0903194,(Dipodomys_stephensi:0.00878187,Dipodomys_ordii:0.00999255):0.0731557):0.151244):0.0330966,((Zapus_hudsonius:0.111617,(Allactaga_bullata:0.0582987,Jaculus_jaculus:0.0639026):0.0496399):0.107598,(Nannospalax_galili:0.157371,(Cricetomys_gambianus:0.113716,(((Rattus_norvegicus:0.084087,(Mus_pahari:0.0370437,(Mus_caroli:0.0194206,(Mus_musculus:0.00884233,Mus_spretus:0.00887581):0.011869):0.0161848):0.0403947):0.0550837,(Acomys_cahirinus:0.104664,(Psammomys_obesus:0.0174643,Meriones_unguiculatus:0.0202623):0.0860137):0.0181869):0.0193226,((Cricetulus_griseus:0.0493955,Mesocricetus_auratus:0.0605788):0.0391709,((Ondatra_zibethicus:0.0313242,(Microtus_ochrogaster:0.0336323,(Ellobius_talpinus:0.0147409,Ellobius_lutescens:0.0239998):0.0109278):0.00729463):0.0634946,(Sigmodon_hispidus:0.114852,(Peromyscus_maniculatus:0.0355755,Onychomys_torridus:0.0392933):0.0351754):0.00237613):0.00264574):0.0291065):0.0127721):0.0830421):0.0587295):0.0567323):0.0183677,((Ctenodactylus_gundi:0.218448,(Hystrix_cristata:0.101999,(((Thryonomys_swinderianus:0.0895374,Petromus_typicus:0.0937914):0.0573272,(Fukomys_damarensis:0.0834025,Heterocephalus_glaber:0.0508309):0.0141052):0.0188575,(((Dinomys_branickii:0.0685268,Chinchilla_lanigera:0.0521576):0.0262264,((Capromys_pilorides:0.054126,Myocastor_coypus:0.0665525):0.0324763,(Ctenomys_sociabilis:0.0727611,Octodon_degus:0.0525419):0.0155333):0.0609864):0.00997129,(Cuniculus_paca:0.0581268,(Dasyprocta_punctata:0.0599851,((Cavia_aperea:0.00811671,(Cavia_tschudii:0.000616777,Cavia_porcellus:0.00135868):0.0046359):0.0575258,(Hydrochoerus_hydrochaeris:0.0496399,Dolichotis_patagonum:0.0491996):0.00381125):0.0327168):0.00539096):0.0247321):0.0223237):0.0113227):0.0783628):0.036942,((Aplodontia_rufa:0.129027,(Xerus_inauris:0.0622471,(Marmota_marmota:0.014328,(Ictidomys_tridecemlineatus:0.0132914,Spermophilus_dauricus:0.0100399):0.00849897):0.0574482):0.041915):0.0492543,(Glis_glis:0.049546,(Graphiurus_murinus:0.0738069,Muscardinus_avellanarius:0.108188):0.00634139):0.0781909):0.0256698):0.00392221):0.0379345):0.00929195,((Tupaia_chinensis:0.0254084,Tupaia_tana:0.0242427):0.191907,(Galeopterus_variegatus:0.115105,((((Callicebus_donacophilus:0.023279,Pithecia_pithecia:0.0227123):0.00579505,((Alouatta_palliata:0.0185004,Ateles_geoffroyi:0.014994):0.00714538,((Saimiri_boliviensis:0.0288699,(Cebus_capucinus:0.00288875,Cebus_albifrons:0.003346):0.023383):0.00254523,(Aotus_nancymaae:0.0209094,(Callithrix_jacchus:0.0195219,Saguinus_imperator:0.021413):0.0101445):0.00112415):0.00365261):0.00239789):0.0362449,((Nomascus_leucogenys:0.0177688,(Pongo_abelii:0.0150116,(Gorilla_gorilla:0.0133726,(Homo_sapiens:0.0257731,(Pan_paniscus:0.0042297,Pan_troglodytes:0.00399287):0.00765588):0.0674312):0.00333023):0.00233374):0.0127934,(((Colobus_angolensis:0.017479,Piliocolobus_tephrosceles:0.0124039):0.00313736,(Semnopithecus_entellus:0.0120956,((Rhinopithecus_roxellana:0.00627619,Rhinopithecus_bieti:0.00366759):0.0115667,(Pygathrix_nemaeus:0.00513534,Nasalis_larvatus:0.00531891):0.0113708):0.000759987):0.00349536):0.00548354,(((Macaca_nemestrina:0.00304186,(Macaca_fascicularis:0.00157401,Macaca_mulatta:0.0260829):0.000619056):0.00330119,(Papio_anubis:0.00555,(Cercocebus_atys:0.00599267,Mandrillus_leucophaeus:0.00466481):0.000701902):0.00133809):0.0133448,(Cercopithecus_neglectus:0.0145461,(Chlorocebus_sabaeus:0.00824348,Erythrocebus_patas:0.00953938):0.00429911):0.00903753):0.00448851):0.015618):0.0139318):0.0751845,((Nycticebus_coucang:0.0418192,Otolemur_garnettii:0.0460071):0.0907418,(Daubentonia_madagascariensis:0.0488202,((Lemur_catta:0.0234786,(Eulemur_flavifrons:0.00653631,Eulemur_fulvus:0.00733765):0.0164241):0.0176328,((Cheirogaleus_medius:0.02843,(Microcebus_murinus:0.021836,Mirza_coquereli:0.0196994):0.0194485):0.0140216,(Propithecus_coquereli:0.0219298,Indri_indri:0.0231719):0.0173257):0.00154747):0.0274926):0.00678991):0.04028):0.0170752):0.00435537):0.00179253):0.0260986,(((Uropsilus_gracilis:0.140446,(Scalopus_aquaticus:0.0773935,Condylura_cristata:0.119842):0.0362569):0.105342,(Solenodon_paradoxus:0.159037,(Erinaceus_europaeus:0.268962,(Sorex_araneus:0.146999,Crocidura_indochinensis:0.156538):0.156084):0.0203894):0.0179427):0.0362101,((((Macroglossus_sobrinus:0.0557028,((Pteropus_alecto:0.00866475,Pteropus_vampyrus:0.00786024):0.0274148,(Rousettus_aegyptiacus:0.049847,Eidolon_helvum:0.0386268):0.003605):0.00182233):0.0832815,((Megaderma_lyra:0.119104,Craseonycteris_thonglongyai:0.103831):0.0235883,(Rhinolophus_sinicus:0.0592597,(Hipposideros_galeritus:0.0313001,Hipposideros_armiger:0.019956):0.0392958):0.0276673):0.0160103):0.0124328,((Tadarida_brasiliensis:0.0807012,((Miniopterus_schreibersii:0.00534387,Miniopterus_natalensis:0.00614728):0.0797012,((Lasiurus_borealis:0.0599573,(Eptesicus_fuscus:0.025604,Pipistrellus_pipistrellus:0.0498021):0.00347511):0.0140869,(Murina_feae:0.047406,((Myotis_davidii:0.0189207,Myotis_myotis:0.0164328):0.00560879,(Myotis_brandtii:0.00949261,Myotis_lucifugus:0.0110509):0.00327999):0.0146725):0.00843709):0.0545935):0.00624793):0.0157074,(Noctilio_leporinus:0.115555,((Micronycteris_hirsuta:0.0552117,(Desmodus_rotundus:0.0555332,(Tonatia_saurophila:0.0524416,(Anoura_caudifer:0.0480548,(Artibeus_jamaicensis:0.0554989,Carollia_perspicillata:0.0470821):0.00827667):0.00240346):0.0107619):0.00353962):0.0337312,(Pteronotus_parnellii:0.0806739,Mormoops_blainvillei:0.0794145):0.00687447):0.0112499):0.0326122):0.0322443):0.0343535,(((Vicugna_pacos:0.0161281,(Camelus_dromedarius:0.00213327,(Camelus_ferus:0.00144238,Camelus_bactrianus:0.0023385):0.00173825):0.0114031):0.106981,((Catagonus_wagneri:0.0603837,Sus_scrofa:0.0556212):0.0818561,((Hippopotamus_amphibius:0.0692973,((Eubalaena_japonica:0.00951001,(Eschrichtius_robustus:0.00690744,(Balaenoptera_bonaerensis:0.00494549,Balaenoptera_acutorostrata:0.00433603):0.00528864):0.0045311):0.00565804,(Kogia_breviceps:0.0308773,(Platanista_gangetica:0.0251195,((Ziphius_cavirostris:0.00884831,Mesoplodon_bidens:0.00928133):0.0114422,(((Orcinus_orca:0.00531989,Tursiops_truncatus:0.00565694):0.00557127,((Phocoena_phocoena:0.00281266,Neophocaena_asiaeorientalis:0.00303685):0.00661084,(Monodon_monoceros:0.00469354,Delphinapterus_leucas:0.00295569):0.0033787):0.00359604):0.0050461,(Inia_geoffrensis:0.0193906,Lipotes_vexillifer:0.016086):0.00139185):0.00562529):0.00131189):0.00117529):0.00251923):0.0304863):0.00874255,(Tragulus_javanicus:0.115262,((Antilocapra_americana:0.0492239,(Giraffa_tippelskirchi:0.0142226,Okapia_johnstoni:0.015991):0.0158578):0.00253796,((Elaphurus_davidianus:0.0188253,(Rangifer_tarandus:0.00930174,Odocoileus_virginianus:0.010623):0.011545):0.022258,(Moschus_moschiferus:0.0413514,((Saiga_tatarica:0.0340919,(Beatragus_hunteri:0.021922,(Pantholops_hodgsonii:0.015786,((Hemitragus_hylocrius:0.00615725,(Ovis_canadensis:0.0071904,Ovis_aries:0.00507301):0.00177797):0.0079443,(Ammotragus_lervia:0.0112816,(Capra_hircus:0.00237966,Capra_aegagrus:0.00245269):0.00854344):0.00281555):0.00548029):0.00724329):0.00490371):0.00972895,(Bubalus_bubalis:0.0158063,((Bos_taurus:0.00276804,Bos_indicus:0.00199289):0.00348994,(Bison_bison:0.00530079,Bos_mutus:0.00687703):0.0010527):0.0125897):0.0126491):0.00753156):0.00438807):0.00275921):0.0468393):0.0413715):0.0193369):0.00978079):0.0450467,(((Equus_asinus:0.00524017,(Equus_przewalskii:0.00155128,Equus_caballus:0.00611611):0.00456642):0.0660159,((Dicerorhinus_sumatrensis:0.0154953,(Diceros_bicornis:0.00645415,(Ceratotherium_simum_cottoni:0.000595046,Ceratotherium_simum:0.000644032):0.0053266):0.00939894):0.0347015,(Tapirus_terrestris:0.0117487,Tapirus_indicus:0.0104334):0.0401096):0.00914911):0.0294937,(((((Panthera_tigris:0.00342575,(Panthera_pardus:0.0056695,Panthera_onca:0.00325602):0.000972659):0.00682005,((Felis_nigripes:0.00514034,Felis_catus:0.00504119):0.0051207,(Puma_concolor:0.00532032,Acinonyx_jubatus:0.00681975):0.00282373):0.00406352):0.0437183,(Paradoxurus_hermaphroditus:0.0687374,(Hyaena_hyaena:0.0584926,(Cryptoprocta_ferox:0.0292861,(Suricata_suricatta:0.0205726,(Helogale_parvula:0.0168319,Mungos_mungo:0.0180444):0.00323576):0.0388591):0.0149397):0.0144057):0.0050353):0.0430935,((Vulpes_lagopus:0.0125579,(Lycaon_pictus:0.0059582,(Canis_lupus:0.000664211,Canis_lupus_familiaris:0.000815605):0.00260963):0.00683263):0.077335,((Ailuropoda_melanoleuca:0.0172233,Ursus_maritimus:0.015471):0.0380942,(((Neomonachus_schauinslandi:0.00617043,(Leptonychotes_weddellii:0.00480869,Mirounga_angustirostris:0.00692056):0.00122453):0.0128296,(Odobenus_rosmarus:0.0101315,Zalophus_californianus:0.011894):0.0116667):0.0212019,(Spilogale_gracilis:0.0735975,(Ailurus_fulgens:0.0533467,(Mellivora_capensis:0.0237479,(Mustela_putorius:0.0276858,(Pteronura_brasiliensis:0.014438,Enhydra_lutris:0.0133999):0.0048439):0.00745261):0.0382576):0.00521009):0.0147413):0.00409235):0.0153372):0.0200227):0.051964,(Manis_pentadactyla:0.0166152,Manis_javanica:0.0171502):0.128308):0.0114745):0.00502293):0.00254751):0.00858392):0.0285072):0.0180951);
