ALPHABET: A C G T 
ORDER: 0
SUBST_MOD: REV
TRAINING_LNL: -2023479.591110
BACKGROUND: 0.306483 0.192602 0.195583 0.305332 
RATE_MAT:
  -0.834004    0.158395    0.524718    0.150891 
   0.252049   -1.267287    0.185634    0.829603 
   0.822246    0.182806   -1.254845    0.249793 
   0.151459    0.523310    0.160007   -0.834776 
TREE: ((((Trichechus_manatus:0.0433909,(Loxodonta_africana:0.0544454,(Heterohyrax_brucei:0.00714272,Procavia_capensis:0.00727091):0.115608):0.00370226):0.0210398,((Chrysochloris_asiatica:0.129121,(Microgale_talazaci:0.0931881,Echinops_telfairi:0.0550951):0.130371):0.0152968,(Elephantulus_edwardii:0.207585,Orycteropus_afer:0.0905708):0.00813586):0.0103338):0.0553898,((Dasypus_novemcinctus:0.0643316,(Chaetophractus_vellerosus:0.0341589,Tolypeutes_matacus:0.027657):0.0175929):0.0406884,((Choloepus_hoffmanni:0.0042759,Choloepus_didactylus:0.00683154):0.0595653,(Tamandua_tetradactyla:0.0187155,Myrmecophaga_tridactyla:0.0162912):0.0751002):0.018251):0.0596597):0.0129856,((((Ochotona_princeps:0.172191,(Lepus_americanus:0.0189537,Oryctolagus_cuniculus:0.0179924):0.0688551):0.0986013,(((Castor_canadensis:0.116836,(Perognathus_longimembris:0.0824584,(Dipodomys_stephensi:0.00793362,Dipodomys_ordii:0.00763481):0.0664856):0.128043):0.0216998,((Zapus_hudsonius:0.104961,(Allactaga_bullata:0.0493912,Jaculus_jaculus:0.061118):0.0417155):0.0967753,(Nannospalax_galili:0.143712,(Cricetomys_gambianus:0.0947994,(((Rattus_norvegicus:0.0712337,(Mus_pahari:0.0340492,(Mus_caroli:0.0170461,(Mus_musculus:0.00720839,Mus_spretus:0.00680806):0.0113379):0.0131455):0.0344166):0.049337,(Acomys_cahirinus:0.0874659,(Psammomys_obesus:0.0179508,Meriones_unguiculatus:0.0156138):0.0780713):0.0151154):0.0160168,((Cricetulus_griseus:0.0457641,Mesocricetus_auratus:0.0523088):0.0345456,((Ondatra_zibethicus:0.0283683,(Microtus_ochrogaster:0.0308164,(Ellobius_talpinus:0.0182279,Ellobius_lutescens:0.0228099):0.0100758):0.0100854):0.056459,(Sigmodon_hispidus:0.103902,(Peromyscus_maniculatus:0.0312839,Onychomys_torridus:0.0381412):0.0323088):0.00293325):0.00161808):0.0223302):0.00842546):0.0754057):0.0480647):0.0482517):0.0172711,((Ctenodactylus_gundi:0.185325,(Hystrix_cristata:0.0822564,(((Thryonomys_swinderianus:0.0746735,Petromus_typicus:0.0833237):0.0503899,(Fukomys_damarensis:0.0729711,Heterocephalus_glaber:0.0455053):0.0159612):0.0140524,(((Dinomys_branickii:0.0601413,Chinchilla_lanigera:0.0479298):0.0231369,((Capromys_pilorides:0.0500596,Myocastor_coypus:0.0644105):0.0271761,(Ctenomys_sociabilis:0.0655224,Octodon_degus:0.04788):0.0117705):0.0571733):0.00947177,(Cuniculus_paca:0.0533416,(Dasyprocta_punctata:0.0533946,((Cavia_aperea:0.00886854,(Cavia_tschudii:0.000854828,Cavia_porcellus:0.000891406):0.00365938):0.0556212,(Hydrochoerus_hydrochaeris:0.0485826,Dolichotis_patagonum:0.0460573):0.00389107):0.0292161):0.00381414):0.0205807):0.0186949):0.0106113):0.0592583):0.0352154,((Aplodontia_rufa:0.104357,(Xerus_inauris:0.0544119,(Marmota_marmota:0.0121079,(Ictidomys_tridecemlineatus:0.00905634,Spermophilus_dauricus:0.00870311):0.00601366):0.0488925):0.0367383):0.0400858,(Glis_glis:0.0417301,(Graphiurus_murinus:0.0614957,Muscardinus_avellanarius:0.10351):0.00445798):0.0733258):0.0166368):0.00274006):0.0289635):0.00734449,((Tupaia_chinensis:0.019378,Tupaia_tana:0.0187788):0.147886,(Galeopterus_variegatus:0.101097,((((Callicebus_donacophilus:0.0238087,Pithecia_pithecia:0.0187235):0.00560223,((Alouatta_palliata:0.0190496,Ateles_geoffroyi:0.0141546):0.00778673,((Saimiri_boliviensis:0.0258942,(Cebus_capucinus:0.00142595,Cebus_albifrons:0.00114108):0.0206826):0.00293571,(Aotus_nancymaae:0.0185077,(Callithrix_jacchus:0.0180186,Saguinus_imperator:0.0184103):0.0105639):0.000886346):0.004625):0.00190499):0.0332633,((Nomascus_leucogenys:0.01811,(Pongo_abelii:0.0156197,(Gorilla_gorilla:0.00737307,(Homo_sapiens:0.00538894,(Pan_paniscus:0.00175978,Pan_troglodytes:0.00162584):0.0038504):0.00243021):0.00773475):0.00315088):0.0104873,(((Colobus_angolensis:0.00790278,Piliocolobus_tephrosceles:0.00767984):0.00279087,(Semnopithecus_entellus:0.00602343,((Rhinopithecus_roxellana:0.00178736,Rhinopithecus_bieti:0.00271252):0.00401913,(Pygathrix_nemaeus:0.005211,Nasalis_larvatus:0.00520327):0.000826622):0.00143029):0.00374428):0.00582336,(((Macaca_nemestrina:0.00326946,(Macaca_fascicularis:0.00140409,Macaca_mulatta:0.00250138):0.000862495):0.00288414,(Papio_anubis:0.0045539,(Cercocebus_atys:0.00491805,Mandrillus_leucophaeus:0.00394816):0.000850832):0.000959991):0.00329115,(Cercopithecus_neglectus:0.00692841,(Chlorocebus_sabaeus:0.00424251,Erythrocebus_patas:0.00398239):0.00298229):0.00332008):0.00553658):0.0200051):0.0168731):0.0755059,((Nycticebus_coucang:0.0387136,Otolemur_garnettii:0.0393788):0.0743112,(Daubentonia_madagascariensis:0.0386531,((Lemur_catta:0.0174745,(Eulemur_flavifrons:0.00491126,Eulemur_fulvus:0.00497021):0.0134856):0.0150906,((Cheirogaleus_medius:0.0225422,(Microcebus_murinus:0.0177011,Mirza_coquereli:0.0157612):0.0146693):0.0106777,(Propithecus_coquereli:0.0185601,Indri_indri:0.0185604):0.0111874):0.00307895):0.0227319):0.00637533):0.0346039):0.0157508):0.0028987):0.001161):0.0233593,(((Uropsilus_gracilis:0.121703,(Scalopus_aquaticus:0.0608258,Condylura_cristata:0.0981569):0.0262271):0.083857,(Solenodon_paradoxus:0.146116,(Erinaceus_europaeus:0.231063,(Sorex_araneus:0.116732,Crocidura_indochinensis:0.149427):0.119558):0.0219755):0.0150413):0.0230662,((((Macroglossus_sobrinus:0.0431657,((Pteropus_alecto:0.00434079,Pteropus_vampyrus:0.00567877):0.0219993,(Rousettus_aegyptiacus:0.0396616,Eidolon_helvum:0.0314138):0.00156047):0.00127814):0.0636372,((Megaderma_lyra:0.0859123,Craseonycteris_thonglongyai:0.0925189):0.0169361,(Rhinolophus_sinicus:0.0497972,(Hipposideros_galeritus:0.0286933,Hipposideros_armiger:0.020462):0.0338071):0.0231909):0.0126634):0.009374,((Tadarida_brasiliensis:0.060704,((Miniopterus_schreibersii:0.00285242,Miniopterus_natalensis:0.00398147):0.0613063,((Lasiurus_borealis:0.0479766,(Eptesicus_fuscus:0.0167453,Pipistrellus_pipistrellus:0.0420107):0.00261033):0.0120234,(Murina_feae:0.0405503,((Myotis_davidii:0.0136438,Myotis_myotis:0.0108657):0.00433498,(Myotis_brandtii:0.00733287,Myotis_lucifugus:0.00804097):0.00352527):0.0106488):0.00946492):0.0434378):0.00497304):0.0111026,(Noctilio_leporinus:0.0939109,((Micronycteris_hirsuta:0.0419981,(Desmodus_rotundus:0.0376594,(Tonatia_saurophila:0.0368006,(Anoura_caudifer:0.0364819,(Artibeus_jamaicensis:0.0413883,Carollia_perspicillata:0.0343204):0.00536251):0.00105351):0.00832594):0.00235758):0.0250654,(Pteronotus_parnellii:0.0609468,Mormoops_blainvillei:0.0587027):0.0050303):0.00919715):0.0282223):0.0231705):0.0229364,(((Vicugna_pacos:0.0115314,(Camelus_dromedarius:0.00151456,(Camelus_ferus:0.000871622,Camelus_bactrianus:0.000886681):0.00118979):0.00667973):0.0736245,((Catagonus_wagneri:0.0457909,Sus_scrofa:0.0441402):0.0625747,((Hippopotamus_amphibius:0.048165,((Eubalaena_japonica:0.00668469,(Eschrichtius_robustus:0.005744,(Balaenoptera_bonaerensis:0.00248223,Balaenoptera_acutorostrata:0.00351068):0.00333715):0.00318408):0.00429798,(Kogia_breviceps:0.0227725,(Platanista_gangetica:0.0202686,((Ziphius_cavirostris:0.0063245,Mesoplodon_bidens:0.00655698):0.0104624,(((Orcinus_orca:0.00358286,Tursiops_truncatus:0.00413263):0.00451862,((Phocoena_phocoena:0.00183595,Neophocaena_asiaeorientalis:0.00207111):0.00555489,(Monodon_monoceros:0.00259879,Delphinapterus_leucas:0.00238954):0.00295086):0.00270384):0.00416143,(Inia_geoffrensis:0.0159792,Lipotes_vexillifer:0.0121309):0.00118012):0.0055256):0.00118987):0.00090157):0.00190416):0.0230747):0.00618233,(Tragulus_javanicus:0.0896165,((Antilocapra_americana:0.03529,(Giraffa_tippelskirchi:0.0104017,Okapia_johnstoni:0.0130079):0.0124393):0.00150258,((Elaphurus_davidianus:0.0125863,(Rangifer_tarandus:0.00622395,Odocoileus_virginianus:0.00738908):0.00891612):0.0134498,(Moschus_moschiferus:0.0283285,((Saiga_tatarica:0.0309565,(Beatragus_hunteri:0.0141767,(Pantholops_hodgsonii:0.0102313,((Hemitragus_hylocrius:0.00348538,(Ovis_canadensis:0.0033297,Ovis_aries:0.00318625):0.00123755):0.00510983,(Ammotragus_lervia:0.00699742,(Capra_hircus:0.00109587,Capra_aegagrus:0.000910364):0.00651035):0.00113759):0.00310802):0.00429004):0.00341712):0.00590695,(Bubalus_bubalis:0.0106955,((Bos_taurus:0.00125483,Bos_indicus:0.00314138):0.00205595,(Bison_bison:0.00377363,Bos_mutus:0.00267567):0.000894195):0.00796086):0.00883491):0.00465167):0.00180576):0.00255729):0.0367975):0.0311048):0.0147987):0.0072319):0.0297336,(((Equus_asinus:0.00349149,(Equus_przewalskii:0.00124251,Equus_caballus:0.00166326):0.00335151):0.0541544,((Dicerorhinus_sumatrensis:0.0136957,(Diceros_bicornis:0.00528884,(Ceratotherium_simum_cottoni:0.000893309,Ceratotherium_simum:0.000852986):0.00433497):0.00766307):0.0271715,(Tapirus_terrestris:0.00944458,Tapirus_indicus:0.00869087):0.0316663):0.00740765):0.0222497,(((((Panthera_tigris:0.00416351,(Panthera_pardus:0.00267532,Panthera_onca:0.00248917):0.000911624):0.00689902,((Felis_nigripes:0.0053821,Felis_catus:0.00399937):0.00353984,(Puma_concolor:0.00514085,Acinonyx_jubatus:0.00639521):0.00150482):0.00521285):0.0380639,(Paradoxurus_hermaphroditus:0.0573186,(Hyaena_hyaena:0.044838,(Cryptoprocta_ferox:0.0234139,(Suricata_suricatta:0.0152969,(Helogale_parvula:0.0133491,Mungos_mungo:0.0125913):0.00167652):0.0312426):0.0102704):0.0117122):0.00436472):0.0344074,((Vulpes_lagopus:0.0110527,(Lycaon_pictus:0.0037986,(Canis_lupus:0.000871984,Canis_lupus_familiaris:0.000904059):0.00228242):0.00661387):0.06222,((Ailuropoda_melanoleuca:0.0140617,Ursus_maritimus:0.0145083):0.0343909,(((Neomonachus_schauinslandi:0.00536776,(Leptonychotes_weddellii:0.00445584,Mirounga_angustirostris:0.00540114):0.000888211):0.0119094,(Odobenus_rosmarus:0.00856672,Zalophus_californianus:0.0108942):0.0100935):0.01922,(Spilogale_gracilis:0.0610113,(Ailurus_fulgens:0.045876,(Mellivora_capensis:0.0201671,(Mustela_putorius:0.0242451,(Pteronura_brasiliensis:0.0140295,Enhydra_lutris:0.0107793):0.00382208):0.00591368):0.0303291):0.00388211):0.0137247):0.0025038):0.0128222):0.016639):0.0427954,(Manis_pentadactyla:0.0131972,Manis_javanica:0.0161417):0.105869):0.00680674):0.00357832):0.00299473):0.00563895):0.0259508):0.0129856);
