ALPHABET: A C G T 
ORDER: 0
SUBST_MOD: REV
TRAINING_LNL: -811122.545410
BACKGROUND: 0.298708 0.200811 0.203783 0.296698 
RATE_MAT:
  -0.850103    0.161216    0.548484    0.140403 
   0.239811   -1.225738    0.172324    0.813602 
   0.803977    0.169811   -1.209737    0.235950 
   0.141355    0.550661    0.162059   -0.854074 
TREE: ((((Trichechus_manatus:0.0608444,(Loxodonta_africana:0.0697819,(Heterohyrax_brucei:0.00826874,Procavia_capensis:0.00915761):0.148591):0.00409586):0.0252613,((Chrysochloris_asiatica:0.154758,(Microgale_talazaci:0.10861,Echinops_telfairi:0.068975):0.164674):0.019997,(Elephantulus_edwardii:0.247258,Orycteropus_afer:0.111004):0.0130971):0.00745064):0.0631164,((Dasypus_novemcinctus:0.0763774,(Chaetophractus_vellerosus:0.0421319,Tolypeutes_matacus:0.0359787):0.018866):0.0465308,((Choloepus_hoffmanni:0.0049634,Choloepus_didactylus:0.00460533):0.0737085,(Tamandua_tetradactyla:0.023442,Myrmecophaga_tridactyla:0.0189783):0.0967776):0.0220145):0.0740488):0.0187084,((((Ochotona_princeps:0.212319,(Lepus_americanus:0.0271855,Oryctolagus_cuniculus:0.0210855):0.0994055):0.126287,(((Castor_canadensis:0.133601,(Perognathus_longimembris:0.094704,(Dipodomys_stephensi:0.0136816,Dipodomys_ordii:0.00738231):0.0746276):0.159519):0.0355326,((Zapus_hudsonius:0.117643,(Allactaga_bullata:0.0595012,Jaculus_jaculus:0.0765055):0.0483408):0.107224,(Nannospalax_galili:0.160247,(Cricetomys_gambianus:0.117674,(((Rattus_norvegicus:0.0850325,(Mus_pahari:0.0431045,(Mus_caroli:0.0190025,(Mus_musculus:0.00799601,Mus_spretus:0.00723389):0.0125616):0.021368):0.0448823):0.056892,(Acomys_cahirinus:0.10718,(Psammomys_obesus:0.0192113,Meriones_unguiculatus:0.0194213):0.0827611):0.0179789):0.0196426,((Cricetulus_griseus:0.0557493,Mesocricetus_auratus:0.0647911):0.037732,((Ondatra_zibethicus:0.0354232,(Microtus_ochrogaster:0.0370762,(Ellobius_talpinus:0.0181429,Ellobius_lutescens:0.0244245):0.0132684):0.0108157):0.0697494,(Sigmodon_hispidus:0.117476,(Peromyscus_maniculatus:0.0403969,Onychomys_torridus:0.0440734):0.0395284):0.00269043):0.00190484):0.0293598):0.0105828):0.10082):0.0540773):0.0619915):0.0171122,((Ctenodactylus_gundi:0.224606,(Hystrix_cristata:0.107143,(((Thryonomys_swinderianus:0.0889436,Petromus_typicus:0.103388):0.0663051,(Fukomys_damarensis:0.0836783,Heterocephalus_glaber:0.0521667):0.0184164):0.0201757,(((Dinomys_branickii:0.079065,Chinchilla_lanigera:0.0548764):0.0251421,((Capromys_pilorides:0.0558697,Myocastor_coypus:0.0686021):0.0334333,(Ctenomys_sociabilis:0.0701614,Octodon_degus:0.0562021):0.0163909):0.0703519):0.00950271,(Cuniculus_paca:0.0593683,(Dasyprocta_punctata:0.0605168,((Cavia_aperea:0.00698197,(Cavia_tschudii:0.000777051,Cavia_porcellus:0.000811497):0.00474202):0.0563587,(Hydrochoerus_hydrochaeris:0.0509905,Dolichotis_patagonum:0.0523013):0.00427683):0.0347337):0.00632439):0.0269774):0.0234689):0.01392):0.0733851):0.0398531,((Aplodontia_rufa:0.120673,(Xerus_inauris:0.0594631,(Marmota_marmota:0.0177993,(Ictidomys_tridecemlineatus:0.014098,Spermophilus_dauricus:0.0105042):0.008976):0.0643355):0.0399249):0.0585269,(Glis_glis:0.0532644,(Graphiurus_murinus:0.0798281,Muscardinus_avellanarius:0.111769):0.00648292):0.0800458):0.0232372):0.00304499):0.0354404):0.0124613,((Tupaia_chinensis:0.0249418,Tupaia_tana:0.0211832):0.19088,(Galeopterus_variegatus:0.11713,((((Callicebus_donacophilus:0.024762,Pithecia_pithecia:0.0197926):0.00641694,((Alouatta_palliata:0.0220705,Ateles_geoffroyi:0.0176363):0.00875519,((Saimiri_boliviensis:0.0298911,(Cebus_capucinus:0.00130364,Cebus_albifrons:0.00144002):0.0249747):0.00286863,(Aotus_nancymaae:0.0204068,(Callithrix_jacchus:0.0191539,Saguinus_imperator:0.0234587):0.0110279):0.000814238):0.00567004):0.00219242):0.0351725,((Nomascus_leucogenys:0.0190815,(Pongo_abelii:0.0160496,(Gorilla_gorilla:0.00790794,(Homo_sapiens:0.00672518,(Pan_paniscus:0.00209034,Pan_troglodytes:0.00163918):0.00331908):0.00197151):0.00744884):0.00261411):0.0094232,(((Colobus_angolensis:0.00949121,Piliocolobus_tephrosceles:0.00961757):0.00267038,(Semnopithecus_entellus:0.00766986,((Rhinopithecus_roxellana:0.00121845,Rhinopithecus_bieti:0.00168335):0.00376547,(Pygathrix_nemaeus:0.00592025,Nasalis_larvatus:0.00500144):0.000767175):0.00113414):0.00417045):0.00630704,(((Macaca_nemestrina:0.00308886,(Macaca_fascicularis:0.00181308,Macaca_mulatta:0.00175324):0.000771433):0.00359016,(Papio_anubis:0.00653232,(Cercocebus_atys:0.00686153,Mandrillus_leucophaeus:0.0051783):0.000754686):0.00185381):0.00509479,(Cercopithecus_neglectus:0.00852772,(Chlorocebus_sabaeus:0.00450645,Erythrocebus_patas:0.00578576):0.00319111):0.00384989):0.00487971):0.0204729):0.0171924):0.076575,((Nycticebus_coucang:0.040986,Otolemur_garnettii:0.0454623):0.0893387,(Daubentonia_madagascariensis:0.0457719,((Lemur_catta:0.0247339,(Eulemur_flavifrons:0.00600465,Eulemur_fulvus:0.00676685):0.0166354):0.0186586,((Cheirogaleus_medius:0.0304574,(Microcebus_murinus:0.022315,Mirza_coquereli:0.0192546):0.0235982):0.0131356,(Propithecus_coquereli:0.0218364,Indri_indri:0.0232569):0.017948):0.00212508):0.027019):0.00779549):0.0397594):0.0189567):0.00298753):0.00107766):0.0283676,(((Uropsilus_gracilis:0.137505,(Scalopus_aquaticus:0.0685337,Condylura_cristata:0.112619):0.0409933):0.100049,(Solenodon_paradoxus:0.173725,(Erinaceus_europaeus:0.253858,(Sorex_araneus:0.149522,Crocidura_indochinensis:0.155751):0.130982):0.0317245):0.0250923):0.0334046,((((Macroglossus_sobrinus:0.0477802,((Pteropus_alecto:0.00738912,Pteropus_vampyrus:0.0076265):0.0247878,(Rousettus_aegyptiacus:0.0429262,Eidolon_helvum:0.0317868):0.00174216):0.000983408):0.0735226,((Megaderma_lyra:0.0982449,Craseonycteris_thonglongyai:0.107457):0.0162743,(Rhinolophus_sinicus:0.0606355,(Hipposideros_galeritus:0.0295166,Hipposideros_armiger:0.0172809):0.0380991):0.0288198):0.0125723):0.0130004,((Tadarida_brasiliensis:0.0818207,((Miniopterus_schreibersii:0.00451202,Miniopterus_natalensis:0.00495714):0.0831622,((Lasiurus_borealis:0.0566843,(Eptesicus_fuscus:0.0223924,Pipistrellus_pipistrellus:0.0498354):0.00483155):0.0124191,(Murina_feae:0.0520402,((Myotis_davidii:0.0179594,Myotis_myotis:0.0150782):0.00537333,(Myotis_brandtii:0.0101619,Myotis_lucifugus:0.0111482):0.00340158):0.0132563):0.00984616):0.0518624):0.003917):0.0109158,(Noctilio_leporinus:0.107812,((Micronycteris_hirsuta:0.0592641,(Desmodus_rotundus:0.0507054,(Tonatia_saurophila:0.0559197,(Anoura_caudifer:0.0463594,(Artibeus_jamaicensis:0.056702,Carollia_perspicillata:0.0438862):0.00851061):0.00242547):0.00873944):0.00310813):0.0322427,(Pteronotus_parnellii:0.0787212,Mormoops_blainvillei:0.0754307):0.00699736):0.00742083):0.0289697):0.0291714):0.0298594,(((Vicugna_pacos:0.0142574,(Camelus_dromedarius:0.00196068,(Camelus_ferus:0.000768244,Camelus_bactrianus:0.000794742):0.0018859):0.0109947):0.0979722,((Catagonus_wagneri:0.0564029,Sus_scrofa:0.0592045):0.0773491,((Hippopotamus_amphibius:0.0647953,((Eubalaena_japonica:0.0101512,(Eschrichtius_robustus:0.00844322,(Balaenoptera_bonaerensis:0.00417838,Balaenoptera_acutorostrata:0.00417269):0.00397239):0.00377476):0.00549568,(Kogia_breviceps:0.0241055,(Platanista_gangetica:0.0196687,((Ziphius_cavirostris:0.0071837,Mesoplodon_bidens:0.00796953):0.00943753,(((Orcinus_orca:0.00584094,Tursiops_truncatus:0.00590155):0.00538786,((Phocoena_phocoena:0.00251621,Neophocaena_asiaeorientalis:0.00270642):0.0072348,(Monodon_monoceros:0.0027228,Delphinapterus_leucas:0.00185502):0.00367108):0.00449514):0.00488717,(Inia_geoffrensis:0.0174739,Lipotes_vexillifer:0.0144498):0.00184894):0.0047016):0.0019409):0.00101699):0.00240385):0.0316518):0.00822426,(Tragulus_javanicus:0.117667,((Antilocapra_americana:0.0456843,(Giraffa_tippelskirchi:0.0142752,Okapia_johnstoni:0.0147758):0.0142787):0.00290385,((Elaphurus_davidianus:0.0176122,(Rangifer_tarandus:0.00841387,Odocoileus_virginianus:0.0092182):0.0124053):0.0205531,(Moschus_moschiferus:0.0350667,((Saiga_tatarica:0.0305795,(Beatragus_hunteri:0.0224481,(Pantholops_hodgsonii:0.0156103,((Hemitragus_hylocrius:0.0050656,(Ovis_canadensis:0.00435095,Ovis_aries:0.00403703):0.00130788):0.00603092,(Ammotragus_lervia:0.00949297,(Capra_hircus:0.00118834,Capra_aegagrus:0.00160609):0.007843):0.0027733):0.00347283):0.00530152):0.00421874):0.00868864,(Bubalus_bubalis:0.0145707,((Bos_taurus:0.00271905,Bos_indicus:0.00101554):0.00247167,(Bison_bison:0.00360478,Bos_mutus:0.00338863):0.000916891):0.0115853):0.0108576):0.00597183):0.00459102):0.00199773):0.0481609):0.0379175):0.0174322):0.00986441):0.0414714,(((Equus_asinus:0.0057421,(Equus_przewalskii:0.000993504,Equus_caballus:0.00109012):0.00432223):0.0755246,((Dicerorhinus_sumatrensis:0.0161954,(Diceros_bicornis:0.00761319,(Ceratotherium_simum_cottoni:0.000776326,Ceratotherium_simum:0.00073974):0.00674378):0.00799426):0.0406411,(Tapirus_terrestris:0.0105934,Tapirus_indicus:0.0113962):0.0435949):0.00824857):0.0292385,(((((Panthera_tigris:0.00381514,(Panthera_pardus:0.00298903,Panthera_onca:0.00337427):0.00115694):0.00719621,((Felis_nigripes:0.00499336,Felis_catus:0.00379349):0.0059315,(Puma_concolor:0.00595224,Acinonyx_jubatus:0.00470531):0.00306506):0.00305277):0.0443928,(Paradoxurus_hermaphroditus:0.0683156,(Hyaena_hyaena:0.0535195,(Cryptoprocta_ferox:0.0310627,(Suricata_suricatta:0.0200602,(Helogale_parvula:0.0173683,Mungos_mungo:0.0139762):0.00384335):0.0324254):0.0130125):0.01153):0.00394726):0.0429025,((Vulpes_lagopus:0.0117147,(Lycaon_pictus:0.0026981,(Canis_lupus:0.000753553,Canis_lupus_familiaris:0.000754494):0.00293838):0.00896983):0.0802844,((Ailuropoda_melanoleuca:0.017358,Ursus_maritimus:0.0159831):0.0419485,(((Neomonachus_schauinslandi:0.00578591,(Leptonychotes_weddellii:0.00553761,Mirounga_angustirostris:0.00607737):0.000878747):0.0146661,(Odobenus_rosmarus:0.0105995,Zalophus_californianus:0.0114202):0.00967621):0.0218356,(Spilogale_gracilis:0.0754796,(Ailurus_fulgens:0.0498691,(Mellivora_capensis:0.0242281,(Mustela_putorius:0.0262519,(Pteronura_brasiliensis:0.0127668,Enhydra_lutris:0.0128126):0.00496994):0.00747894):0.0377252):0.00618774):0.0133238):0.00311109):0.0146138):0.0209135):0.0513142,(Manis_pentadactyla:0.0155621,Manis_javanica:0.0175475):0.128731):0.0101749):0.00443595):0.00479557):0.00911901):0.0289507):0.0187084);
