#!/bin/bash
set -e
set -o pipefail
curl -O "https://cgl.gi.ucsc.edu/data/alignathon/data/{primates.brudno.orig.maf.gz,primates.cactus.orig.maf.gz,primates.compara.orig.maf.gz,primates.kimMa.orig.maf.gz,primates.minmei.automz.orig.maf.gz,primates.minmei.tba.orig.maf.gz,primates.mugsy.orig.maf.gz,primates.pmauve.orig.maf.gz,primates.robusta.orig.maf.gz,primates.softberry.v1.orig.maf.gz,primates.softberry.v2.orig.maf.gz,primates.softberry.v3.orig.maf.gz,primates.ucsc.orig.maf.gz}"
echo -e "a7aab451c27f459651b5d45be66fd8db  primates.brudno.orig.maf.gz
9bcfd46f8072cd2ba420e3926f41a51a  primates.cactus.orig.maf.gz
fbe21a3375e8304e2cf09938efb63ce1  primates.compara.orig.maf.gz
be8c4e4c8a98c938bba50c410fdbe8b8  primates.kimMa.orig.maf.gz
a2b8f4f0d405ff1f7576a23214f925bf  primates.minmei.automz.orig.maf.gz
30b853edffb2282a99881d8138558eee  primates.minmei.tba.orig.maf.gz
db9578c005bba4fef4d324db7134eebf  primates.mugsy.orig.maf.gz
5d38269a28b5c8f5e3badb6e1d533e06  primates.pmauve.orig.maf.gz
6bbe1c49957a75e153613d793bcd8b1d  primates.robusta.orig.maf.gz
3293a1000354706593cc5b735e6afc48  primates.softberry.v1.orig.maf.gz
b4dc502d8dfe96850d07291fc944be32  primates.softberry.v2.orig.maf.gz
b4f54a90f6014c635b648d4950b9f6d5  primates.softberry.v3.orig.maf.gz
715f6364cc32de5f358ae0d2f93ba24e  primates.ucsc.orig.maf.gz" > md5sum.txt

md5sum --check md5sum.txt
rm md5sum.txt
mkdir -p packagePrimates/predictions
mv *orig.maf.gz packagePrimates/predictions
pushd packagePrimates/predictions
gunzip *orig.maf.gz
popd