#!/bin/bash
set -e
set -o pipefail
curl -O "https://cgl.gi.ucsc.edu/data/alignathon/data/{mammals.brudno.orig.maf.gz,mammals.cactus.orig.maf.gz,mammals.ebi.epo.orig.maf.gz,mammals.ebi.mp.orig.maf.gz,mammals.kimMa.orig.maf.gz,mammals.minmei.automz.orig.maf.gz,mammals.minmei.tba.orig.maf.gz,mammals.mugsy.orig.maf.gz,mammals.robusta.orig.maf.gz,mammals.softberry.v1.orig.maf.gz,mammals.softberry.v2.orig.maf.gz,mammals.softberry.v3.orig.maf.gz,mammals.ucsc.orig.maf.gz}"
echo -e "613e30373f483da74e9c9940176a78ef  mammals.brudno.orig.maf.gz
be53c7eeac19256aff4cc6b2f5951e82  mammals.cactus.orig.maf.gz
77886a607ee9916dd992cb39b39e0fd6  mammals.ebi.epo.orig.maf.gz
42757517496ade956ef4a6714202b3bb  mammals.ebi.mp.orig.maf.gz
4bec8330cad8abfd31c0f3f03cbc8d84  mammals.kimMa.orig.maf.gz
d11c7e532cb5fec1c53fc88972afd98a  mammals.minmei.automz.orig.maf.gz
b8b6d233ea5b073c47c5161222d76257  mammals.minmei.tba.orig.maf.gz
9dfe46fb0b4f1fc990c536e9a47baea1  mammals.mugsy.orig.maf.gz
41c25f36721ed44a5f93fc16e9a26fd7  mammals.robusta.orig.maf.gz
2c4f7b79349dd218b2f857f043d0900d  mammals.softberry.v1.orig.maf.gz
05e48eda51df5806ea0ed052b94f23aa  mammals.softberry.v2.orig.maf.gz
b6fa81fded65fc3c1522f48b21f3cbee  mammals.softberry.v3.orig.maf.gz
448471917deecfa223e66ad02bce95b9  mammals.ucsc.orig.maf.gz" > md5sum.txt

md5sum --check md5sum.txt
rm md5sum.txt
mkdir -p packageMammals/predictions
mv *orig.maf.gz packageMammals/predictions
pushd packageMammals/predictions
gunzip *orig.maf.gz
popd