#!/bin/bash
set -e
set -o pipefail
curl -O "https://cgl.gi.ucsc.edu/data/alignathon/data/{flies.automz.orig.maf.gz,flies.cactus.orig.maf.gz,flies.robusta.aveBest.orig.maf.gz,flies.robusta.bestPick.orig.maf.gz,flies.softberry.v1.orig.maf.gz,flies.softberry.v2.orig.maf.gz,flies.softberry.v3.orig.maf.gz,flies.tba.orig.maf.gz,flies.ucsc.orig.maf.gz}"
echo -e "85ace54453c25115b740d07118dd2bc6  flies.automz.orig.maf.gz
9998889073ae845edcf938e4fb224cf1  flies.cactus.orig.maf.gz
38a80d52b001ec54c6bf81a131b84bf7  flies.robusta.aveBest.orig.maf.gz
6d98cd48e6f7bf750847f90a702fc03c  flies.robusta.bestPick.orig.maf.gz
30036f66c50f61025ac314b99b19b1b8  flies.softberry.v1.orig.maf.gz
ae84b24d02e08b712fe43da940390bba  flies.softberry.v2.orig.maf.gz
fc7bef4f65d799270ae9474931cedba8  flies.softberry.v3.orig.maf.gz
4a5679048098f25a3e56433bfc3ee365  flies.tba.orig.maf.gz
dcd4fc8db11957908c8cfa8efa827bb5  flies.ucsc.orig.maf.gz
" > md5sum.txt

md5sum --check md5sum.txt
rm md5sum.txt
mkdir -p packageFlies/predictions
mv *orig.maf.gz packageFlies/predictions
pushd packageFlies/predictions
gunzip *orig.maf.gz
popd