isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ENSMUSG00000000001.5_108014718_108053462_1	chr3	-	3140	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	122	0	-122	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAGATAATCCAAATTTA	NA	False	NA	-19	True	NA	NA	NA	108053462	108014717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUSG00000000028.16_18599203_18630344_1	chr16	-	1853	19	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	378	6	-3	0	3prime_fragment	FALSE	canonical	3	368	junction_7	53.1151788307469	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630344	18599202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ENSMUSG00000000127.16_64171010_64446192_1	chr17	+	2749	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_10	30.9070689904469	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64171009	64446192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000168.11_50547080_50570828_1	chr9	-	2636	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	252	1147	252	748	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTTGTAGAAGTGGAGCT	NA	False	NA	0	True	AATAAA	-23	NA	50570828	50547079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000168.11_50547207_50570828_1	chr9	-	2509	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	252	1274	252	621	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAGATATAAGCCCGCT	NA	False	NA	NA	False	AATAAA	-16	NA	50570828	50547206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000168.11_50547652_50570828_1	chr9	-	2064	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	252	1719	252	176	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCACTAGTTAATTTTAT	NA	False	NA	-5	True	ATTAAA	-18	NA	50570828	50547651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000194.14_31042363_31104623_1	chr2	+	1935	18	FSM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	35	4164	0	45	multi-exon	FALSE	canonical	1	139	junction_14	88.5769073297929	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGAGCCTGGGTCTGTGC	NA	False	NA	20	True	AGTAAA	-28	NA	31042362	31104623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
ENSMUSG00000000278.11_88815083_88846291_1	chr11	-	1860	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	237	0	-237	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGCAAAAGCAAACCACATG	5201	False	NA	NA	False	NA	NA	NA	88846291	88815082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000000296.9_31208372_31321954_1	chr10	-	1208	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	-104	-1	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_31208653_31321826_1	chr10	-	799	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	24	280	-11	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321826	31208652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000308.15_121188321_121194218_1	chr2	+	1543	10	NIC	ENSMUSG00000000308.15	novel	1518	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.8743660217344	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	865	False	NA	32	True	AGTAAA	-20	NA	121188320	121194218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000326.14_18225636_18245129_1	chr16	-	1591	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	225	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAATTCACTGAGTTA	4113	False	NA	NA	False	ATTAAA	-18	NA	18245129	18225635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_18225636_18245129_2	chr16	-	1534	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAATTCACTGAGTTA	4113	False	NA	NA	False	ATTAAA	-18	NA	18245129	18225635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ENSMUSG00000000326.14_18225636_18245129_3	chr16	-	1601	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	225	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAATTCACTGAGTTA	4113	False	NA	NA	False	ATTAAA	-18	NA	18245129	18225635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_18226050_18226278_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000339.15_116282612_116301731_1	chr3	-	1468	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	126	0	-17	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301731	116282611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUSG00000000346.10_100513511_100517758_1	chr15	+	970	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	281	884	281	429	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCTTTAATCTCCTTAA	NA	False	NA	8	True	ATTAAA	-19	NA	100513510	100517758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
ENSMUSG00000000346.10_100513511_100518642_1	chr15	+	1854	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	281	0	281	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513510	100518642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
ENSMUSG00000000355.14_37689532_37702303_2	chrX	+	630	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000365.10_56640154_56726892_1	chr14	+	3506	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	349	junction_12	57.9852946875326	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640153	56726892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ENSMUSG00000000384.16_6565599_6576067_1	chr11	-	3138	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-24	-824	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000399.11_126798959_126826088_1	chr6	-	1170	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	0	275	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	2248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAGAGTCACTCTATT	NA	False	NA	-48	True	NA	NA	NA	126826088	126798958	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ENSMUSG00000000409.15_129442137_129450324_1	chr4	-	1597	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1841	0	-72	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129450324	129442136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
ENSMUSG00000000439.10_115578922_115594944_1	chr6	+	1530	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	59	4641	0	4569	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTGCCATCTTTCTTT	NA	False	NA	9	True	AATGAA	-2	NA	115578921	115594944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
ENSMUSG00000000439.10_115578922_115595647_1	chr6	+	2233	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	59	3938	0	-3938	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTATTCCTGGCTTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	115578921	115595647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
ENSMUSG00000000544.15_165957909_165994079_1	chr1	+	2413	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	102	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957908	165994079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000544.15_165958036_165994079_1	chr1	+	2286	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	229	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165958035	165994079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000561.15_105866824_105875505_1	chr3	+	1972	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	139	1571	0	662	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	12	True	AATAAA	-16	NA	105866823	105875505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000563.18_105850018_105866562_1	chr3	-	1114	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	853	4	0	0	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	2783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ENSMUSG00000000568.16_100108862_100126282_1	chr5	-	1171	8	FSM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	494	5	201	0	multi-exon	FALSE	canonical	3	1800	junction_7	925.260845736521	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100126282	100108861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ENSMUSG00000000568.16_100108862_100126786_1	chr5	-	1008	7	NNC	ENSMUSG00000000568.16	novel	1117	8	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	184	junction_6	1739.8817408727	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100126786	100108861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115230_100126753
ENSMUSG00000000579.15_6869070_6875299_1	chr17	+	810	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	0	1779	0	351	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	5174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869069	6875299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_1	chr17	+	958	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4243.08535541454	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873344_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_2	chr17	+	738	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4229.55933402051	170	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_3	chr17	+	689	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	121	1779	0	351	multi-exon	FALSE	canonical	3	5304	junction_1	1714.27572169707	3770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000581.9_17207579_17217234_1	chr11	+	1054	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-15	1942	0	610	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	7316	False	NA	26	True	AATAAA	-27	NA	17207578	17217234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000581.9_17207579_17218197_1	chr11	+	2017	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-15	979	0	-979	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGAGTTTGAAATAATT	7316	False	NA	NA	False	AATAAA	-25	NA	17207578	17218197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000600.16_3853184_3891359_1	chr5	+	2980	17	NNC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	59.7316590574044	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886899_3890873
ENSMUSG00000000740.13_123829089_123831983_1	chr8	+	987	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	17818	junction_4	2909.59597710747	7511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000751.14_75191176_75239136_1	chr11	-	2879	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	14	2184	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	-16	True	AATAAA	-21	NA	75239136	75191175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000787.13_13147261_13158150_1	chrX	+	2499	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	52	2141	0	-111	multi-exon	FALSE	canonical	3	179	junction_1	98.1322449554681	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGCACACAGGTGTGAT	NA	False	NA	NA	False	AATAAA	-27	NA	13147260	13158150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_13147261_13158867_1	chrX	+	3216	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	52	1424	0	606	multi-exon	FALSE	canonical	3	179	junction_1	98.1322449554681	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAACAAATGGCTCCAGAA	NA	False	NA	NA	False	NA	NA	NA	13147260	13158867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000827.19_181138958_181157180_1	chr2	+	922	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-22	2575	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157180_2	chr2	+	964	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	-34	869	0	0	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157180_3	chr2	+	982	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-16	1984	0	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157180_4	chr2	+	1024	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	2579	0	0	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_1	chr2	+	1530	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	2073	0	-363	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_2	chr2	+	1470	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	-34	363	0	-363	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_3	chr2	+	1428	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-22	2069	0	-363	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_5	chr2	+	1488	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-16	1478	0	-363	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181158550_1	chr2	+	2352	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-16	614	0	501	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATTTGTTTGGTCTGT	NA	False	NA	10	True	AATAAA	-24	NA	181138957	181158550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181158550_2	chr2	+	2394	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	1209	0	501	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATTTGTTTGGTCTGT	NA	False	NA	10	True	AATAAA	-24	NA	181138957	181158550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000838.18_67755951_67761569_1	chrX	+	2551	3	ISM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	33528	0	494	0	3prime_fragment	FALSE	canonical	3	826	junction_1	32	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67755950	67761569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_67756020_67756846_67756930_67759170
ENSMUSG00000000876.12_154429139_154445608_1	chr2	-	1308	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	20	1461	0	-1461	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTTGAGATGCATT	NA	False	NA	NA	False	AATAAA	-13	NA	154445608	154429138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000876.12_154429507_154445608_1	chr2	-	940	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	20	1829	0	-1829	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGAGTCTGTGGCTTGA	NA	False	NA	-2	True	NA	NA	NA	154445608	154429506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000884.18_18317573_18383292_1	chr16	+	1477	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	-65	2137	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317572	18383292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317690_18383292_1	chr16	+	1219	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317690_18383292_3	chr16	+	1360	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	52	2137	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000916.16_135398807_135404997_1	chr5	+	1711	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	285	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000000916.16_135398807_135404997_2	chr5	+	1588	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	655	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000000959.8_54598298_54606097_1	chr14	+	1429	10	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_3	170.425466131599	889	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTTGTCTGGGCTT	NA	False	NA	24	True	AGTAAA	-1	NA	54598297	54606097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_54598375_54598778_54598926_54600738_54600877_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000000959.8_54598298_54606097_2	chr14	+	1505	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	1033	0	3	multi-exon	FALSE	canonical	3	499	junction_4	29.1475598792348	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTTGTCTGGGCTT	NA	False	NA	24	True	AGTAAA	-1	NA	54598297	54606097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000001016.13_90383464_90395273_1	chr3	+	1604	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	10	413	0	3	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTTTATTTTTCT	NA	False	NA	16	True	ATTAAA	-16	NA	90383463	90395273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ENSMUSG00000001054.10_51514498_51526474_1	chr11	-	1699	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	249	-2	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATTGCATGGTCTTGT	NA	False	NA	-7	True	AATATA	-21	NA	51526474	51514497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUSG00000001054.10_51514498_51526595_1	chr11	-	1820	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	128	-2	-15	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATTGCATGGTCTTGT	NA	False	NA	-7	True	AATATA	-21	NA	51526595	51514497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUSG00000001056.4_51510598_51514264_1	chr11	+	729	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	36	277	0	8	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	3575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51510597	51514264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
ENSMUSG00000001082.13_34790992_34794493_1	chr5	-	2012	12	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-9	0	intron_retention	FALSE	canonical	3	174	junction_11	68.0427672998254	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTCCGTCTTACTA	NA	False	NA	-6	True	AATAAA	-18	NA	34794493	34790991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUSG00000001100.11_78403019_78412997_1	chr11	+	1489	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	565	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1635	False	NA	15	True	AATAAA	-17	NA	78403018	78412997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001100.11_78403214_78412997_1	chr11	+	1294	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	195	565	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1830	False	NA	15	True	AATAAA	-17	NA	78403213	78412997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001105.16_78427269_78432563_1	chr11	+	830	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	-248	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427268	78432563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUSG00000001105.16_78427269_78432563_2	chr11	+	1421	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	-2	-252	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427268	78432563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
ENSMUSG00000001120.16_76597692_76797755_1	chr10	-	2145	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-133	1	-34	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	1103	False	NA	-4	True	AATAAA	-17	NA	76797755	76597691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUSG00000001127.13_20664053_20719143_1	chrX	+	1561	6	ISM	ENSMUSG00000001127.13	ENSMUST00000136451.8	2439	17	0	7593	0	0	5prime_fragment	TRUE	canonical	3	74	junction_1	119.456100723236	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	1123	False	NA	NA	False	AATAAA	-27	NA	20664052	20719143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUSG00000001127.13_20664053_20726758_1	chrX	+	2349	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	1	66	junction_12	96.2243674382372	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	1123	False	NA	23	True	NA	NA	NA	20664052	20726758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUSG00000001127.13_20714817_20719143_1	chrX	+	968	7	NNC	ENSMUSG00000001127.13	novel	1520	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	6308	False	NA	NA	False	AATAAA	-27	NA	20714816	20719143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
ENSMUSG00000001134.10_20818162_20828217_1	chrX	-	575	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	39	261	-4	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828217	20818161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_20818162_20828217_2	chrX	-	467	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828217	20818161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001158.14_86652387_86661500_1	chr6	-	627	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	4	254	-1	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATTTATGACACCCAG	7650	False	NA	31	True	TATAAA	-9	NA	86661500	86652386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUSG00000001175.17_100165788_100172770_1	chr12	+	718	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	3303	0	16	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGTTCATTTCTTC	9259	False	NA	0	True	NA	NA	NA	100165787	100172770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001175.17_100165788_100173085_1	chr12	+	1033	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	2988	0	331	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCTTCTAGTTCAATCT	9259	False	NA	18	True	ATTAAA	-35	NA	100165787	100173085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001175.17_100165788_100173574_1	chr12	+	1522	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	2499	0	820	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	1387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9259	False	NA	30	True	AATAAA	-19	NA	100165787	100173574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001247.17_30657200_30672612_1	chr7	-	1833	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	240	-2	135	0	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672612	30657199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001247.17_30657200_30672612_2	chr7	-	1890	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	135	-4	135	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672612	30657199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001270.10_111635795_111638731_1	chr12	-	1508	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	5118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
ENSMUSG00000001285.13_102240155_102246286_1	chr15	+	1181	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	11	288	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5938	False	NA	16	True	AATAAA	-17	NA	102240154	102246286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUSG00000001289.13_102234603_102239925_1	chr15	+	627	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	52	383	0	4	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	650	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	386	False	NA	30	True	AATAAA	-18	NA	102234602	102239925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001305.6_186453289_186481525_1	chr1	-	1177	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	30	114	-3	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	1355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481525	186453288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001305.6_186453449_186481525_1	chr1	-	1017	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	30	274	-3	-160	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATTTAACCTGTTTTT	NA	False	NA	-27	True	ATTAAA	-20	NA	186481525	186453448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001313.13_101359123_101362679_1	chr11	+	1272	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	122	0	122	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359122	101362679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001348.16_22038023_22042949_1	chr9	-	1341	5	NNC	ENSMUSG00000001348.16	novel	1419	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	9074	False	NA	-19	True	AATAAA	-21	NA	22042949	22038022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
ENSMUSG00000001376.18_3498422_3603315_1	chr6	+	3532	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	40	216	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTGTGTGAGACTACTA	2	True	NA	22	True	AATAAA	-19	NA	3498421	3603315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ENSMUSG00000001383.10_36926929_36931335_1	chr18	+	926	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	1384	0	199	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCTTTCCCCATATCCC	6616	False	NA	29	True	AATAAA	-20	NA	36926928	36931335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001383.10_36926929_36931728_1	chr18	+	1319	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	991	0	592	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTTCTTCTGTTTCAC	6616	False	NA	31	True	ATTAAA	-28	NA	36926928	36931728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001415.11_88243618_88253247_1	chr3	+	1145	5	ISM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	0	6789	0	-1656	5prime_fragment	FALSE	canonical	3	289	junction_3	7.49583217528247	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCTCAGAGATGCAT	NA	False	NA	NA	False	NA	NA	NA	88243617	88253247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669
ENSMUSG00000001418.14_88232362_88235980_1	chr3	+	1547	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	32	2640	0	92	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	442	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTATTTGTGAGTCTTT	4027	False	NA	9	True	TTTAAA	-19	NA	88232361	88235980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
ENSMUSG00000001440.6_97052358_97054842_1	chr11	-	1415	3	FSM	ENSMUSG00000001440.6	ENSMUST00000132633.2	643	3	206	-978	206	978	multi-exon	FALSE	canonical	3	1118	junction_2	60	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	-5	True	GATAAA	-19	NA	97054842	97052357	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97053508_97054178_97054341_97054739
ENSMUSG00000001440.6_97052358_97078724_1	chr11	-	4093	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	-17	1818	-17	978	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	-5	True	GATAAA	-19	NA	97078724	97052357	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
ENSMUSG00000001445.11_96932421_96939817_1	chr11	+	1451	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	35	222	0	-222	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	908	False	NA	20	True	AATAAA	-21	NA	96932420	96939817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001445.11_96932421_96939817_2	chr11	+	1281	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	0	-222	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	908	False	NA	20	True	AATAAA	-21	NA	96932420	96939817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001445.11_96932421_96940039_1	chr11	+	1503	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	908	False	NA	10	True	NA	NA	NA	96932420	96940039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001467.6_4132114_4154435_1	chr5	-	2651	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	311	969	-14	-969	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTACTGGCTGGTCT	NA	False	NA	-2	True	NA	NA	NA	4154435	4132113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ENSMUSG00000001467.6_4132538_4154435_1	chr5	-	2227	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	311	1393	-14	742	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACTGGTCCCAAATGGT	NA	False	NA	-13	True	AATAAA	-21	NA	4154435	4132537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ENSMUSG00000001472.18_124100492_124128070_1	chr8	+	2248	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-71	561	0	100	multi-exon	TRUE	canonical	3	157	junction_17	92.4052680533628	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCCGTGTCTTTTGTTTT	NA	False	NA	23	True	NA	NA	NA	124100491	124128070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ENSMUSG00000001472.18_124100595_124128070_1	chr8	+	2145	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	32	561	0	100	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCCGTGTCTTTTGTTTT	NA	False	NA	23	True	NA	NA	NA	124100594	124128070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ENSMUSG00000001525.11_36145697_36149124_1	chr17	-	1691	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	884	-15	800	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	9846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	-32	True	NA	NA	NA	36149124	36145696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ENSMUSG00000001569.11_29639662_29656474_1	chr5	+	2852	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	0	6367	0	5121	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGTGGCACGTGTCT	2959	False	NA	5	True	TTTAAA	-7	NA	29639661	29656474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ENSMUSG00000001576.16_26780519_26874326_1	chr17	+	1119	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	56	1579	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACGTGTCTCTTTCCCTG	NA	False	NA	14	True	GATAAA	-16	NA	26780518	26874326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUSG00000001604.15_135975263_136002214_1	chr4	+	1299	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.780457469281	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	6603	False	NA	20	True	AATAAA	-31	NA	135975262	136002214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001627.13_40253130_40272961_1	chr12	-	1587	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	227	1564	0	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTGTAGTGAGCAGA	NA	False	NA	-3	True	AATAAA	-21	NA	40272961	40253129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000001627.13_40253130_40273184_1	chr12	-	1810	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	4	1564	0	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTGTAGTGAGCAGA	NA	False	NA	-3	True	AATAAA	-21	NA	40273184	40253129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000001666.9_75607064_75609248_1	chr10	-	662	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	232.5	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	75609248	75607063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_75607341_75608571_75608748_75609039
ENSMUSG00000001707.9_38829665_38842986_1	chr13	-	1023	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	48	1482	0	-1482	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	2137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTGTTATCTTTCC	NA	False	NA	-1	True	AGTAAA	-19	NA	38842986	38829664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001707.9_38829839_38842986_1	chr13	-	849	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	48	1656	0	-1656	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTGTTTACTTTTT	NA	False	NA	NA	False	AAAAAG	-16	NA	38842986	38829838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001755.13_100973451_100977445_1	chr11	+	1370	9	NIC	ENSMUSG00000001755.13	novel	2386	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001767.6_145760179_145776637_1	chr2	-	2351	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	297	780	-3	-780	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTACTTGAGTCCGA	NA	False	NA	-14	True	AGTAAA	-16	NA	145776637	145760178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
ENSMUSG00000001774.9_18203596_18225297_1	chr9	+	2173	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	175	3441	0	1988	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTCATGTGTTT	8540	False	NA	12	True	NA	NA	NA	18203595	18225297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUSG00000001785.14_85707748_85724220_1	chr10	+	1779	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	53	740	0	-740	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTAACAGGCCATCTGA	NA	False	NA	12	True	TATAAA	-16	NA	85707747	85724220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUSG00000001785.14_85707748_85724797_1	chr10	+	2356	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	53	163	0	-163	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTGGACTTAAGAGGT	NA	False	NA	NA	False	AATAAA	-24	NA	85707747	85724797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUSG00000001786.15_85857644_85884193_1	chr10	+	2036	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	-192	3544	-192	6	multi-exon	TRUE	canonical	3	208	junction_3	24.7878498462452	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857643	85884193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_85857836_85884193_2	chr10	+	1692	9	NIC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	77.6434156899347	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857835	85884193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001794.14_29886361_29892531_1	chr7	-	1232	10	NNC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_9	479.120258622219	319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892531	29886360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892468
ENSMUSG00000001794.14_29886415_29892402_1	chr7	-	1317	8	NIC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	-5	0	intron_retention	FALSE	canonical	3	1491	junction_7	76.3271690467679	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892402	29886414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29892018_29892291
ENSMUSG00000001794.14_29886415_29893206_1	chr7	-	1650	10	FSM	ENSMUSG00000001794.14	ENSMUST00000129761.8	1157	10	0	-493	0	0	multi-exon	FALSE	canonical	3	18	junction_9	497.427331996628	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29893206	29886414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892671
ENSMUSG00000001827.13_101507538_101517874_1	chr7	-	1179	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	2016	0	0	0	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3576	False	NA	0	True	AATAAA	-31	NA	101517874	101507537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
ENSMUSG00000001827.13_101507538_101518225_1	chr7	-	1089	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3225	False	NA	0	True	AATAAA	-31	NA	101518225	101507537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518199
ENSMUSG00000001827.13_101507538_101518529_1	chr7	-	1229	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1361	0	0	0	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2921	False	NA	0	True	AATAAA	-31	NA	101518529	101507537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
ENSMUSG00000001827.13_101507538_101518529_3	chr7	-	1145	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	1466	0	0	0	3prime_fragment	FALSE	canonical	3	52	junction_5	108.542341968469	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2921	False	NA	0	True	AATAAA	-31	NA	101518529	101507537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363
ENSMUSG00000001829.18_101312964_101437021_1	chr7	+	2149	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	124	2354	0	4	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	-18	True	AATAAA	-28	NA	101312963	101437021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ENSMUSG00000001833.18_25163747_25219862_1	chr9	+	2511	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163746	25219862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001833.18_25163944_25219862_1	chr9	+	2263	13	NNC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	484.465255032116	840	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163943	25219862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_25163996_25176689_25176793_25188890_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001833.18_25163944_25219862_2	chr9	+	2314	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163943	25219862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001844.11_143302245_143314978_1	chr5	-	1274	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
ENSMUSG00000001844.11_143302245_143314978_2	chr5	-	1550	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
ENSMUSG00000001844.11_143302245_143314978_3	chr5	-	1397	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	84.1580146425249	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
ENSMUSG00000001844.11_143302245_143314978_4	chr5	-	1418	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	86.0744812736656	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUSG00000001855.16_31864498_31873238_1	chr2	+	909	7	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	50	69145	0	3270	5prime_fragment	FALSE	canonical	3	103	junction_4	13.4039795085887	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCATGTGAAAGATTAT	NA	False	NA	9	True	NA	NA	NA	31864497	31873238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134
ENSMUSG00000001864.14_31840286_31861851_1	chr2	+	1379	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	135	1603	0	501	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTCTCCATGTGTGCT	NA	False	NA	14	True	NA	NA	NA	31840285	31861851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
ENSMUSG00000001891.17_21271940_21321219_1	chr11	-	1795	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	-18	267	-18	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGTACTTTATTTACT	NA	False	NA	-41	True	AATAAA	-23	NA	21321219	21271939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUSG00000001909.17_85412936_85426415_1	chr8	+	2351	17	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	133.003230693844	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85412935	85426415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85415915_85426415_1	chr8	+	2125	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	420	22	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85415915_85426415_2	chr8	+	2049	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85416093_85426415_1	chr8	+	2202	16	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	200	0	0	0	3prime_fragment	FALSE	canonical	3	403	junction_2	59.8663697097312	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85416092	85426415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001918.18_16516009_16532199_1	chr7	+	2020	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	744	0	-314	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16516008	16532199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001918.18_16518854_16532199_1	chr7	+	1727	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	191	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_1	534.082800228579	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518853	16532199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_16518953_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001924.16_20524660_20548943_1	chrX	+	3474	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	475	0	-475	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20524659	20548943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001924.16_20529137_20548943_1	chrX	+	3596	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	475	0	-475	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20529136	20548943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001942.9_37525123_37557764_1	chr9	+	1603	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	157	3187	0	-519	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTATGTTGCCAGCTCCT	NA	False	NA	NA	False	AATATA	-25	NA	37525122	37557764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
ENSMUSG00000001964.15_73298436_73301353_1	chrX	+	1312	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	143	140	0	-140	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	20	True	AATAAA	-15	NA	73298435	73301353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
ENSMUSG00000002010.18_72822569_72830228_1	chrX	-	1291	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	210	junction_11	355.941284971423	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830228	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
ENSMUSG00000002010.18_72822569_72830503_1	chrX	-	1777	10	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1072	junction_8	153.432898431163	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_2	chrX	-	1890	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1120	junction_8	123.424632873669	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_3	chrX	-	1319	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1072	junction_10	144.485579365652	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002014.13_72830321_72834417_1	chrX	+	654	6	NNC	ENSMUSG00000002014.13	novel	2119	5	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	607.273118127256	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTACATTCAAGACAC	5119	False	NA	33	True	AATAAA	-15	NA	72830320	72834417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_72830470_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_72830634_72834432_1	chrX	+	1028	5	ISM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	-34	0	0	0	intron_retention	FALSE	canonical	3	426	junction_1	493.487081897794	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5432	False	NA	48	True	AATAAA	-30	NA	72830633	72834432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964
ENSMUSG00000002014.13_72830634_72834432_2	chrX	+	901	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5432	False	NA	48	True	AATAAA	-30	NA	72830633	72834432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_72830634_72834432_3	chrX	+	1422	3	FSM	ENSMUSG00000002014.13	ENSMUST00000142829.2	522	3	-237	-663	0	0	multi-exon	FALSE	canonical	3	426	junction_1	615	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5432	False	NA	48	True	AATAAA	-30	NA	72830633	72834432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72830913_72832443_72832560_72833405
ENSMUSG00000002014.13_72830634_72834432_4	chrX	+	876	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	599.846276603894	804	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5432	False	NA	48	True	AATAAA	-30	NA	72830633	72834432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_72830913_72832440_72832560_72832685_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002015.6_72729989_72759781_1	chrX	-	1014	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	205	0	-205	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACCTGATTGTTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	72759781	72729988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUSG00000002031.14_44684257_44702190_1	chr9	+	1565	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-193	-313	0	2	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCTGGCTCATTAGTG	NA	False	NA	8	True	AATACA	-17	NA	44684256	44702190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ENSMUSG00000002043.18_19242655_19250070_1	chr7	+	749	6	NIC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	193.692126840509	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	525	False	NA	21	True	AGTAAA	-22	NA	19242654	19250070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_19242758_19248125_19248194_19248346_19248465_19248949_19249016_19249128_19249223_19249770
ENSMUSG00000002059.19_78079705_78083014_1	chr11	+	1585	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	100	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6474	False	NA	21	True	ATTAAA	-15	NA	78079704	78083014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002064.11_78136817_78146322_1	chr11	+	945	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	245	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136816	78146322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
ENSMUSG00000002064.11_78136817_78146322_2	chr11	+	1023	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	245	0	245	0	multi-exon	FALSE	canonical	3	217	junction_1	4	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136816	78146322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78136997_78141841_78142039_78145676
ENSMUSG00000002076.13_32164894_32253492_1	chr17	-	1598	8	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	162	at_least_one_novel_splicesite	FALSE	non_canonical	3	53	junction_1	471.788607106952	445	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCTGCCTGCACTCATG	NA	False	NA	-17	True	ATTAAA	-17	NA	32253492	32164893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_32164934_32164957_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32164894_32253492_2	chr17	-	1702	9	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	162	at_least_one_novel_splicesite	FALSE	non_canonical	3	53	junction_1	394.529129944799	1103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCTGCCTGCACTCATG	NA	False	NA	-17	True	ATTAAA	-17	NA	32253492	32164893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_32164934_32164957_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_1	chr17	-	1414	7	NIC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_4	419.803393136464	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_2	chr17	-	1310	6	NIC	ENSMUSG00000002076.13	novel	1479	7	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_3	514.177634675022	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_32165786_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_3	chr17	-	1564	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	-10	1313	-10	0	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_4	chr17	-	1736	8	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	393.49786712074	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253246
ENSMUSG00000002102.16_90884646_90889783_1	chr2	+	1350	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	292	-6	0	4	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTCAGCCTCTGTGG	NA	False	NA	24	True	AATAAA	-25	NA	90884645	90889783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUSG00000002109.15_91041917_91067305_1	chr2	-	1819	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	22	-284	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	3019	False	NA	-26	True	AATAAA	-35	NA	91067305	91041916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
ENSMUSG00000002129.12_4110355_4130528_1	chr11	+	2902	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	5	2013	0	1109	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGAGATACTGTGT	NA	False	NA	-20	True	NA	NA	NA	4110354	4130528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
ENSMUSG00000002129.12_4110355_4130630_1	chr11	+	3004	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	5	1911	0	1211	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGCAGTTTGTCCCTGC	NA	False	NA	10	True	ATTAAA	-25	NA	4110354	4130630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
ENSMUSG00000002147.19_127494247_127496830_1	chr10	+	1595	4	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	-4	-1022	4	intron_retention	FALSE	canonical	3	216	junction_3	14.6590889515307	287	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1052	False	NA	-2	True	AATAAA	-26	NA	127494246	127496830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457
ENSMUSG00000002147.19_127494247_127496830_2	chr10	+	1518	5	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	-4	-1022	4	3prime_fragment	FALSE	canonical	3	216	junction_3	13.3229125944742	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1052	False	NA	-2	True	AATAAA	-26	NA	127494246	127496830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002205.17_44398060_44426939_1	chr7	+	1746	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	223	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44398059	44426939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002233.14_104696350_104701775_1	chr3	+	1074	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	0	-115	0	0	multi-exon	FALSE	canonical	2	16	junction_1	97.4586450757448	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_104696350_104701775_2	chr3	+	1160	6	NNC	ENSMUSG00000002233.14	novel	1202	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	108.939249125373	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_104696400_104698799_104698904_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_104696350_104701775_3	chr3	+	1056	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	146	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002280.12_25992778_26001770_1	chr17	+	1991	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	28	536	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACTGTGTGTCTGGTACC	6948	False	NA	11	True	AATAAA	-23	NA	25992777	26001770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
ENSMUSG00000002308.17_34062077_34067727_1	chr17	+	1176	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	12	1021	0	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7005	False	NA	23	True	ATTAAA	-16	NA	34062076	34067727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ENSMUSG00000002319.17_55863197_55873099_1	chr14	-	3464	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	42	340	-11	0	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGCTGTGACATCATAC	9787	False	NA	-27	True	AATAAA	-30	NA	55873099	55863196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ENSMUSG00000002326.7_55909692_55916201_1	chr14	+	1537	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	0	456	0	428	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	21	True	ATTAAA	-22	NA	55909691	55916201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_55909837_55916201_1	chr14	+	1500	10	NIC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	0	428	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	39.4658783705058	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	21	True	ATTAAA	-22	NA	55909836	55916201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_55909950_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002329.8_55896328_55897908_1	chr14	-	753	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	977	0	887	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGTTGTTTCCATTTT	2342	False	NA	-16	True	ATTAAA	-34	NA	55897908	55896327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
ENSMUSG00000002329.8_55896328_55897908_2	chr14	-	684	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	57	992	0	887	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGTTGTTTCCATTTT	2342	False	NA	-16	True	ATTAAA	-34	NA	55897908	55896327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ENSMUSG00000002342.18_70625055_70635502_1	chr8	+	2189	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	0	829	0	2	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTTACCATGGTGCC	5866	False	NA	9	True	AATAAA	-19	NA	70625054	70635502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUSG00000002343.12_70672848_70686776_1	chr8	-	1897	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	340	26	0	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	5008	False	NA	-26	True	NA	NA	NA	70686776	70672847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ENSMUSG00000002345.19_70592363_70599911_1	chr8	+	601	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	214	-5	0	0	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCTTTCCATGCTGGG	8827	False	NA	22	True	AATACA	-16	NA	70592362	70599911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
ENSMUSG00000002379.8_57024798_57029137_1	chr17	+	467	4	NNC	ENSMUSG00000002379.8	novel	545	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	154	junction_2	1198.36249385012	217	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024797	57029137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_57024943_57028034_57028128_57028365_57028442_57028984
ENSMUSG00000002395.15_71820285_71822375_1	chr8	+	961	5	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	382.313598371808	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71820284	71822375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_71820338_71820413_71820493_71820602_71820773_71821493_71821948_71822170
ENSMUSG00000002396.9_71824475_71825798_1	chr8	+	584	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	492	535	485	199	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTGTGTGCAGCTACCT	NA	False	NA	9	True	AGTAAA	-14	NA	71824474	71825798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
ENSMUSG00000002416.14_39569522_39576405_1	chr6	+	375	4	NNC	ENSMUSG00000002416.14	novel	4371	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	114	junction_2	1008.63945766342	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569521	39576405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_39569647_39573384_39573459_39575199_39575296_39576325
ENSMUSG00000002455.15_181296664_181297454_1	chr2	+	332	2	ISM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	53552	-1	53498	1	3prime_fragment	FALSE	canonical	3	512	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	3920	False	NA	29	True	ATTAAA	-17	NA	181296663	181297454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_181296756_181297214
ENSMUSG00000002458.14_181330212_181335742_1	chr2	-	1380	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	-2	-599	0	0	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335742	181330211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
ENSMUSG00000002477.6_10617796_10627971_1	chr18	+	578	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	21	259	0	16	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTGTCTGTTGATTGT	-11	True	NA	-13	True	AATAAA	-15	NA	10617795	10627971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUSG00000002477.6_10617796_10628083_1	chr18	+	690	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	21	147	0	128	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	1388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATTTCTTTGAGTCCA	-11	True	NA	26	True	AATACA	-17	NA	10617795	10628083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUSG00000002635.12_33884058_33896086_1	chr7	-	1161	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	134	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5732	False	NA	NA	False	ATTAAA	-20	NA	33896086	33884057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUSG00000002658.10_57310405_57318398_1	chr17	-	1827	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-110	0	-110	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318398	57310404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUSG00000002660.9_57297305_57303188_1	chr17	+	795	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	615.837032014152	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_57297514_57297605_57297678_57298293_57298391_57300447_57300554_57302877
ENSMUSG00000002661.15_57304343_57306137_1	chr17	+	732	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	185	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGGATCTTCAAATG	371	False	NA	4	True	AATAAA	-14	NA	57304342	57306137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUSG00000002661.15_57304343_57306137_2	chr17	+	558	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	4	174	0	0	multi-exon	FALSE	canonical	3	32	junction_1	221	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGGATCTTCAAATG	371	False	NA	4	True	AATAAA	-14	NA	57304342	57306137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57304568_57305670_57305796_57305929
ENSMUSG00000002728.15_145745182_145758238_1	chr2	+	1014	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	21	107	0	-107	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_2	chr2	+	709	7	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_6	449.099623939079	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723_145757808_145758112
ENSMUSG00000002728.15_145745182_145758238_3	chr2	+	1044	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	21	107	0	-107	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_4	chr2	+	1009	6	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	canonical	3	156	junction_4	440.981178736689	523	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757458_145757600_145757723
ENSMUSG00000002741.10_5905812_5917780_1	chr11	+	2422	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	119	0	119	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905811	5917780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ENSMUSG00000002767.14_46957169_46961058_1	chr17	+	1044	7	NNC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	404.152920728446	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957168	46961058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959933_46960035_46960809
ENSMUSG00000002768.9_46992050_46994028_1	chr17	+	778	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	121	-226	0	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46992049	46994028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002768.9_46992050_46994028_2	chr17	+	807	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	138	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46992049	46994028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002778.15_45522249_45532671_1	chr7	+	1061	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	53	485	0	0	multi-exon	FALSE	canonical	3	208	junction_1	16.5378354085412	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	3997	False	NA	15	True	AAGAAA	-25	NA	45522248	45532671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002797.10_54962633_54969856_1	chr6	-	725	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	-10	-284	-8	0	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2779	False	NA	-2	True	ATTAAA	-32	NA	54969856	54962632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
ENSMUSG00000002797.10_54962633_54969856_2	chr6	-	813	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	79	3068	-8	0	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2779	False	NA	-2	True	ATTAAA	-32	NA	54969856	54962632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
ENSMUSG00000002804.5_112898349_112905750_1	chr12	-	809	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	-6	438	-6	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCGCTGGCTTTGAGC	8841	False	NA	-6	True	AATAAA	-19	NA	112905750	112898348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002808.8_19776000_19803958_1	chr13	-	2223	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	16	124	0	-124	multi-exon	FALSE	canonical	3	59	junction_2	5.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTATTCTTTGATGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	19803958	19775999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUSG00000002820.7_21176602_21185043_1	chr9	+	1913	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	13	4025	0	2	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGGCGTTGTTGACA	8647	False	NA	23	True	GATAAA	-15	NA	21176601	21185043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
ENSMUSG00000002820.7_21176602_21185043_2	chr9	+	1886	10	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_8	152.03800694417	129	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGGCGTTGTTGACA	8647	False	NA	23	True	GATAAA	-15	NA	21176601	21185043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184113_21184207_21184549
ENSMUSG00000002835.10_56347439_56375027_1	chr17	+	3256	15	NNC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	0	-805	at_least_one_novel_splicesite	TRUE	non_canonical	3	209	junction_1	81.0012597533684	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTGTCTTCTGTCTCA	NA	False	NA	21	True	TATAAA	-15	NA	56347438	56375027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_56347464_56347493_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000002844.10_38265766_38273044_1	chr16	-	1571	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	21	1374	0	-1374	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTCTGACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	38273044	38265765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
ENSMUSG00000002845.15_38379060_38411746_1	chr16	+	1839	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	-194	0	38	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7070	False	NA	23	True	AGTAAA	-14	NA	38379059	38411746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_38379060_38411746_2	chr16	+	1639	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	290.386703380165	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7070	False	NA	23	True	AGTAAA	-14	NA	38379059	38411746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000002845.15_38383223_38411746_1	chr16	+	1965	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	306.891445587849	1122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	23	True	AGTAAA	-14	NA	38383222	38411746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000002845.15_38383223_38411746_2	chr16	+	2044	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	49	778	0	38	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	23	True	AGTAAA	-14	NA	38383222	38411746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002846.10_38319004_38343003_1	chr16	-	1256	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	22	295	0	-295	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTTCCGATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	38343003	38319003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
ENSMUSG00000002846.10_38337022_38343003_1	chr16	-	771	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	92	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_38337326_38338728_38338895_38342702
ENSMUSG00000002847.8_38216479_38228048_1	chr16	-	878	5	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	25459	0	10108	0	3prime_fragment	FALSE	canonical	3	158	junction_2	28.8823042709546	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38228048	38216478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953
ENSMUSG00000002870.9_88860456_88861426_1	chr6	-	706	2	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	14336	0	7471	0	3prime_fragment	FALSE	canonical	3	3402	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88861426	88860455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_88861093_88861357
ENSMUSG00000002870.9_88860456_88875662_1	chr6	-	3271	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	100	0	-3	0	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88875662	88860455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
ENSMUSG00000002885.15_84449880_84467812_2	chr8	-	2990	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	-10	-113	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAGCTTTGGAACAATA	NA	False	NA	NA	False	AATAAA	-17	NA	84467812	84449879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002885.15_84454177_84467812_1	chr8	-	1518	11	ISM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	-10	4184	0	0	5prime_fragment	FALSE	canonical	3	115	junction_7	23.9768638483018	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCACAGCTGTGGGGTG	NA	False	NA	NA	False	AATAAA	-36	NA	84467812	84454176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002963.18_44506764_44512074_1	chr7	+	1661	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	181	342	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9516	False	NA	15	True	AATAAA	-17	NA	44506763	44512074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002963.18_44506764_44512416_1	chr7	+	2003	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	181	0	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGACTTAGCAGCTGTGT	9516	False	NA	90	True	NA	NA	NA	44506763	44512416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002968.10_44528808_44541819_1	chr7	-	2302	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	317	0	-4	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	6972	False	NA	-6	True	AATAAA	-17	NA	44541819	44528807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ENSMUSG00000002981.11_19367174_19398946_1	chr7	-	2453	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	12	1678	0	0	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCAACCACCGCACCTC	5160	False	NA	-17	True	AATAAA	-21	NA	19398946	19367173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
ENSMUSG00000002983.18_19340142_19362376_1	chr7	-	2328	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19362376	19340141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
ENSMUSG00000002985.17_19430197_19432977_1	chr7	-	1484	3	FSM	ENSMUSG00000002985.17	ENSMUST00000174710.2	514	3	-2	-968	0	0	multi-exon	FALSE	canonical	3	8700	junction_2	860.5	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19431573_19432112_19432179_19432935
ENSMUSG00000002985.17_19430197_19432977_2	chr7	-	1109	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	136	163	0	0	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	4232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
ENSMUSG00000002985.17_19430197_19433113_1	chr7	-	1245	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	0	163	0	0	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	4271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19433113	19430196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
ENSMUSG00000002996.18_31976455_32000220_1	chr12	-	2626	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	314	202	0	-202	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGATTTCTGGTTGA	NA	False	NA	-8	True	AATAAA	-16	NA	32000220	31976454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ENSMUSG00000003037.17_72915203_72934108_1	chr8	+	751	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	3640	0	-3640	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACCGTCTGATCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	72915202	72934108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003037.17_72915203_72934685_1	chr8	+	1328	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	3063	0	-3063	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGAAATGAATCTGTC	NA	False	NA	9	True	NA	NA	NA	72915202	72934685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003037.17_72915203_72935122_1	chr8	+	1765	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	2626	0	-2626	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTGCCCTCCCCTGGA	NA	False	NA	22	True	ATTAAA	-19	NA	72915202	72935122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003038.16_133692755_133695220_1	chr4	-	467	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	92	706	0	0	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTTTTTTTTAAGCT	NA	False	NA	NA	False	TATAAA	-17	NA	133695220	133692754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003039.10_72973574_72976240_1	chr8	+	542	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	2022	0	-1034	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTTTTGGTTTTGGGGT	NA	False	NA	11	True	ATTAAA	-18	NA	72973573	72976240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003039.10_72973574_72976867_1	chr8	+	1169	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	1395	0	-407	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGTGAATGTTGTCTG	NA	False	NA	15	True	AATAAA	-15	NA	72973573	72976867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003039.10_72973574_72977279_2	chr8	+	1581	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	983	0	5	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTGCGTGAAACAGATA	NA	False	NA	23	True	AATATA	-19	NA	72973573	72977279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003051.14_135181317_135186195_1	chr1	-	1980	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	111	4	-19	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186195	135181316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ENSMUSG00000003062.14_19549126_19579927_1	chr13	-	1274	9	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	340.955069437309	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579927	19549125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUSG00000003099.12_16738565_16761755_1	chr7	-	1951	13	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	317.791718565618	491	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761755	16738564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756374_16756582_16761617
ENSMUSG00000003099.12_16738565_16761755_2	chr7	-	2266	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	0	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761755	16738564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUSG00000003131.8_45878912_45896127_1	chr9	-	1896	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	222	4755	-2	1070	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTTCCATGGGAAAC	4134	False	NA	NA	False	NA	NA	NA	45896127	45878911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003131.8_45879503_45896127_1	chr9	-	1305	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	222	5346	-2	479	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGAGATGCTATAGTTA	4134	False	NA	-21	True	ATTAAA	-18	NA	45896127	45879502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003153.11_122704785_122719481_1	chr6	-	3719	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	223	17	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8913	False	NA	-21	True	AATAAA	-12	NA	122719481	122704784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUSG00000003153.11_122706100_122719481_1	chr6	-	2404	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	223	1332	0	790	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCTTTGTAGTTAGTGA	8913	False	NA	NA	False	ACTAAA	-20	NA	122719481	122706099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUSG00000003153.11_122716103_122719481_1	chr6	-	1090	3	ISM	ENSMUSG00000003153.11	ENSMUST00000168801.2	418	4	398	-748	0	689	3prime_fragment	FALSE	canonical	3	10026	junction_1	359.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTTGCCATGTGGAAAAT	8913	False	NA	NA	False	NA	NA	NA	122719481	122716102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_122716953_122717346_122717440_122719334
ENSMUSG00000003161.16_8106558_8117759_1	chr5	+	828	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	31	1392	0	33	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTGTTATACCAGTCA	NA	False	NA	22	True	AATAAA	-28	NA	8106557	8117759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUSG00000003161.16_8106558_8117860_1	chr5	+	929	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	31	1291	0	134	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACATATTTTCTTGTGA	NA	False	NA	5	True	TATAAA	-22	NA	8106557	8117860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUSG00000003166.21_17667175_17709557_1	chr16	-	1503	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-33	8956	0	0	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709557	17667174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ENSMUSG00000003184.16_44647072_44651814_1	chr7	+	1573	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	458	0	0	multi-exon	TRUE	canonical	3	81	junction_5	29.0601066054199	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647071	44651814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUSG00000003199.17_56316231_56323662_1	chr17	+	1286	12	NIC	ENSMUSG00000003199.17	novel	1701	13	NA	NA	0	9	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	267.709507050626	208	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAAGCCTGTGGCTGGGG	NA	False	NA	18	True	AATAAA	-18	NA	56316230	56323662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_56316257_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003199.17_56316562_56323662_1	chr17	+	1285	12	ISM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	361	128	229	9	3prime_fragment	FALSE	canonical	3	800	junction_1	72.3614663904886	228	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAAGCCTGTGGCTGGGG	NA	False	NA	18	True	AATAAA	-18	NA	56316561	56323662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003199.17_56316562_56323790_1	chr17	+	1413	12	ISM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	361	0	229	0	3prime_fragment	FALSE	canonical	3	800	junction_1	72.3614663904886	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGTACAGTTCATTTC	NA	False	NA	146	True	TTTAAA	-7	NA	56316561	56323790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003200.11_56323750_56343635_1	chr17	-	2150	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003208.10_56266174_56274951_1	chr17	+	1326	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	334	0	-330	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCGTGCTGTTTAAAC	344	False	NA	13	True	AATACA	-29	NA	56266173	56274951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUSG00000003234.17_20367394_20379568_1	chr16	+	2462	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	67	561	0	0	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	4	True	ATTAAA	-13	NA	20367393	20379568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
ENSMUSG00000003235.14_20317691_20328073_1	chr16	+	2430	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	124	0	124	0	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317690	20328073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ENSMUSG00000003235.14_20321502_20328073_1	chr16	+	1404	10	ISM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	3935	0	-2011	0	3prime_fragment	FALSE	canonical	3	2657	junction_1	181.446111443659	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20321501	20328073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ENSMUSG00000003299.11_20914214_20920127_1	chr9	+	1100	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	180	8	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003308.16_21141027_21150136_1	chr9	-	2941	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	231	0	-27	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150136	21141026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUSG00000003308.16_21141363_21150136_1	chr9	-	2605	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	231	336	-27	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTCTATTGTCTCTG	NA	False	NA	-9	True	AATACA	-28	NA	21150136	21141362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUSG00000003363.16_27231425_27252467_1	chr7	-	2112	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	170	0	-26	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252467	27231424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ENSMUSG00000003363.16_27231425_27252467_2	chr7	-	2037	13	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	130.304211367093	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252467	27231424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27252422
ENSMUSG00000003421.14_44711913_44726840_1	chr7	+	987	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	33	794	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3118	False	NA	27	True	AATAAA	-18	NA	44711912	44726840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003423.16_44803773_44809489_1	chr7	+	1044	10	NIC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	115.92792567202	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803772	44809489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_44803845_44805716_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003435.10_28014316_28038171_1	chr7	-	3537	29	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	156.353178178541	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029998_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUSG00000003438.18_28004941_28011471_1	chr7	-	1489	10	NNC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.088188782943	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2682	False	NA	-1	True	NA	NA	NA	28011471	28004940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009698_28009753_28010293_28010445_28011349
ENSMUSG00000003438.18_28005249_28011471_2	chr7	-	1181	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	26	308	-9	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTGTCCAGAGTCC	2682	False	NA	-2	True	AATAAA	-19	NA	28011471	28005248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUSG00000003444.9_28086161_28092133_1	chr7	-	691	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	590	0	-590	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092133	28086160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003444.9_28086161_28092133_2	chr7	-	796	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	0	-590	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092133	28086160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003464.14_171954340_171962850_1	chr1	+	1849	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954339	171962850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUSG00000003464.14_171954340_171963336_2	chr1	+	2385	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	18	-486	0	486	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAGTCACTTCGAGT	NA	False	NA	14	True	AAGAAA	-11	NA	171954339	171963336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUSG00000003549.10_19079026_19090449_1	chr7	+	1052	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	323	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1034	False	NA	15	True	AATAAA	-20	NA	19079025	19090449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000003623.5_9016033_9047146_1	chr5	-	2818	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	178	0	-104	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047146	9016032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUSG00000003623.5_9016211_9047146_1	chr5	-	2640	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	178	178	-104	-178	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTAGAGCTAGCAGCTTT	NA	False	NA	0	True	ATTAAA	-21	NA	9047146	9016210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUSG00000003644.18_133574605_133592415_1	chr4	-	2130	12	ISM	ENSMUSG00000003644.18	ENSMUST00000157067.9	2637	20	7209	-531	-4062	0	3prime_fragment	FALSE	canonical	3	996	junction_6	94.9394761531335	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	9483	False	NA	-9	True	AATAAA	-14	NA	133592415	133574604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335
ENSMUSG00000003657.10_110869170_110879699_1	chr8	-	1145	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15139	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	NA	False	NA	-12	True	AATAAA	-22	NA	110879699	110869169	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
ENSMUSG00000003662.11_127084540_127089736_1	chr2	-	1393	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	1682	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGATTTAGGGCATGGTG	NA	False	NA	-13	True	ATTAAA	-6	NA	127089736	127084539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
ENSMUSG00000003721.15_121232082_121255494_1	chr1	-	2438	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	259	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255494	121232081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003778.15_34732883_34757624_1	chr18	-	3223	22	FSM	ENSMUSG00000003778.15	ENSMUST00000003876.10	4468	22	30	1215	-17	0	multi-exon	FALSE	canonical	3	307	junction_21	99.9950565671548	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTCTGGCCTTTGGTGT	NA	False	NA	-5	True	NA	NA	NA	34757624	34732882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUSG00000003779.17_34758060_34765858_1	chr18	+	2930	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	272	472	0	0	multi-exon	TRUE	canonical	3	938	junction_13	99.0044268869321	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6249	False	NA	23	True	AATAAA	-20	NA	34758059	34765858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ENSMUSG00000003809.15_85613022_85620413_1	chr8	-	1977	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	137	0	133	0	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620413	85613021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
ENSMUSG00000003809.15_85613216_85620413_1	chr8	-	1783	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	137	194	133	-194	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTAGGACTGGACTAGGT	NA	False	NA	-13	True	AATAAA	-15	NA	85620413	85613215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
ENSMUSG00000003809.15_85613216_85620550_1	chr8	-	1920	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	0	194	0	-194	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTAGGACTGGACTAGGT	NA	False	NA	-13	True	AATAAA	-15	NA	85620550	85613215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
ENSMUSG00000003812.14_85635360_85638098_1	chr8	+	1398	7	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	34.0864912962436	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	18	True	NA	NA	NA	85635359	85638098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637819_85637964
ENSMUSG00000003812.14_85640020_85640944_2	chr8	+	483	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	-206	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGTTGGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85640944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_85640158_85640599
ENSMUSG00000003812.14_85640020_85641150_1	chr8	+	689	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85641150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_85640158_85640599
ENSMUSG00000003813.16_85562107_85567281_1	chr8	-	1262	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	13	567	-11	142	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATATATATTCATGTTT	NA	False	NA	NA	False	NA	NA	NA	85567281	85562106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003814.9_85568720_85573495_1	chr8	-	1875	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	68	241	-36	-241	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	1681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85573495	85568719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
ENSMUSG00000003824.13_85598822_85614075_1	chr8	+	1295	4	NIC	ENSMUSG00000003824.13	novel	929	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	1047	junction_1	431.92772029074	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_2	chr8	+	829	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	82	775	0	0	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_3	chr8	+	1141	3	NIC	ENSMUSG00000003824.13	novel	685	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	832	junction_1	576	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_85599462_85612563_85612753_85613763
ENSMUSG00000003863.19_44988697_44991658_1	chr7	-	1439	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1074	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTGGTGACCAGCCTTT	5912	False	NA	0	True	NA	NA	NA	44991658	44988696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
ENSMUSG00000003865.17_45097329_45106043_1	chr7	+	2154	6	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	13061	0	174	0	3prime_fragment	FALSE	canonical	3	219	junction_3	11.2605506082074	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	NA	False	NA	25	True	AATACA	-21	NA	45097328	45106043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003868.15_45071322_45083704_1	chr7	-	1491	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	343	0	-3	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	-16	True	NA	-4	True	TATAAA	-15	NA	45083704	45071321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUSG00000003868.15_45071322_45083704_2	chr7	-	1577	14	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	1951	junction_13	209.501917066259	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	-16	True	NA	-4	True	TATAAA	-15	NA	45083704	45071321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUSG00000003868.15_45071322_45084061_1	chr7	-	1585	16	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_15	624.837258812245	1622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9168	False	NA	-4	True	TATAAA	-15	NA	45084061	45071321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
ENSMUSG00000003873.12_45111121_45115901_1	chr7	-	912	5	ISM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	359	0	298	0	3prime_fragment	FALSE	canonical	3	256	junction_1	1275.81591540473	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	10002	False	NA	-2	True	AATAAA	-22	NA	45115901	45111120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUSG00000003873.12_45111121_45116261_1	chr7	-	750	5	NIC	ENSMUSG00000003873.12	novel	801	6	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1515.54792072042	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9976	False	NA	-2	True	AATAAA	-22	NA	45116261	45111120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45116165
ENSMUSG00000003873.12_45111121_45116261_2	chr7	-	1272	5	ISM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	-1	0	-1	0	intron_retention	FALSE	canonical	3	256	junction_1	1275.81591540473	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9976	False	NA	-2	True	AATAAA	-22	NA	45116261	45111120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUSG00000003923.15_71063766_71073900_1	chr10	-	1485	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	210	2472	210	510	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	507	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTTCTGAAATTATGTA	NA	False	NA	-10	True	AATAAA	-18	NA	71073900	71063765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ENSMUSG00000003992.16_91609246_91849364_1	chr13	+	1696	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	77	2184	0	9	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTGTCTGAAGCAAG	2798	False	NA	3	True	AATAAA	-23	NA	91609245	91849364	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUSG00000004018.10_26337202_26421430_1	chr11	+	1211	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1067	446	0	0	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	NA	False	NA	12	True	AATAAA	-19	NA	26337201	26421430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421878_1	chr11	+	1659	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1067	-2	0	2	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTCATTAACACCCCT	NA	False	NA	15	True	AATAAA	-17	NA	26337201	26421878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004038.10_107871012_107876484_1	chr3	-	1114	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004038.10_107871012_107876484_2	chr3	-	1013	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004038.10_107871012_107876484_3	chr3	-	1196	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	115	0	115	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004056.16_27291171_27337648_1	chr7	+	1747	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	194	2603	0	53	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGTGTTCCCTT	NA	False	NA	13	True	TTTAAA	-19	NA	27291170	27337648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_27291171_27338878_1	chr7	+	2977	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	194	1373	0	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27291170	27338878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004069.18_4501978_4524810_1	chr16	+	1738	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	18	749	0	268	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGTGATTAATT	NA	False	NA	22	True	ATTAAA	-39	NA	4501977	4524810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ENSMUSG00000004070.16_4544227_4584113_1	chr16	+	1237	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	493	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4544226	4584113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004071.14_4584705_4607799_1	chr16	-	2518	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	55	1380	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4607799	4584704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004071.14_4585203_4607799_1	chr16	-	2020	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	55	1878	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607799	4585202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004071.14_4585612_4607799_1	chr16	-	1611	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	55	2287	0	-409	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGTCTGTGCTATGT	NA	False	NA	0	True	AATGAA	-18	NA	4607799	4585611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004096.10_14411943_14421670_1	chr9	+	878	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	30	203	0	9	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTTTTTTTGGTT	NA	False	NA	22	True	ATTAAA	-22	NA	14411942	14421670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004096.10_14411943_14421920_1	chr9	+	1090	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	-259	0	47	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTTTTGTGTGCTGTGGG	NA	False	NA	50	True	TATAAA	-31	NA	14411942	14421920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004100.13_20799572_20803474_1	chr9	+	1649	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	766	junction_8	67.5113159239085	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799571	20803474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
ENSMUSG00000004100.13_20799572_20803474_2	chr9	+	1658	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	766	junction_8	68.2725113238786	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799571	20803474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUSG00000004100.13_20799572_20803474_3	chr9	+	1763	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	766	junction_8	68.7216608258755	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799571	20803474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUSG00000004127.13_137849230_137862880_1	chr3	+	1302	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	21	2702	0	1301	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCGTTTGGTTTTGTGTA	NA	False	NA	NA	False	AAGAAA	-1	NA	137849229	137862880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_137849230_137864038_1	chr3	+	2460	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	21	1544	0	-1541	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCTAAAATTCAGGTTT	NA	False	NA	4	True	AATAAA	-19	NA	137849229	137864038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004207.15_60113450_60138377_1	chr10	+	2649	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	1	-4	0	1	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004264.18_124689299_124693913_1	chr6	+	1312	9	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	902.100985200659	2103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ENSMUSG00000004268.12_124681345_124689118_1	chr6	-	1005	6	NNC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_3	504.274766372461	1110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689118	124681344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_124681622_124681901_124682052_124682120_124682175_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004268.12_124681345_124689118_2	chr6	-	1308	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689118	124681344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
ENSMUSG00000004359.17_88510634_88520893_2	chr10	-	1684	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ENSMUSG00000004359.17_88510634_88520893_3	chr10	-	1780	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-16	-1118	-16	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_88511134_88520893_1	chr10	-	1184	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520893	88511133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ENSMUSG00000004359.17_88511134_88520893_3	chr10	-	1280	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-16	-618	-16	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520893	88511133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004393.11_6208919_6217746_1	chr11	-	1937	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_13	274.883019766978	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4515	False	NA	-2	True	NA	NA	NA	6217746	6208918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217652
ENSMUSG00000004393.11_6208919_6217746_2	chr11	-	1876	14	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_12	280.168482699651	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4515	False	NA	-2	True	NA	NA	NA	6217746	6208918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216918_6217417_6217580_6217659
ENSMUSG00000004394.13_6220714_6224865_2	chr11	-	1653	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	5	345	0	-345	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5343	False	NA	-1	True	AATAAA	-16	NA	6224865	6220713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUSG00000004446.13_120870080_120893797_1	chr6	-	1814	6	NNC	ENSMUSG00000004446.13	novel	2415	7	NA	NA	0	-265	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_5	358.381137896514	492	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893797	120870079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893787
ENSMUSG00000004446.13_120870080_120893797_2	chr6	-	1907	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	17	265	0	-265	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893797	120870079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
ENSMUSG00000004446.13_120870080_120893797_3	chr6	-	2042	7	NIC	ENSMUSG00000004446.13	novel	2415	7	NA	NA	0	-265	combination_of_known_splicesites	FALSE	canonical	3	32	junction_5	439.124507780348	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893797	120870079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120883389_120883525_120893694
ENSMUSG00000004451.15_119398035_119432333_1	chr1	-	2098	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	191	0	191	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432333	119398034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUSG00000004460.18_22676616_22690866_1	chr16	+	1634	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	21	272	0	-190	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTTTTCCTGT	NA	False	NA	34	True	AATACA	-27	NA	22676615	22690866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004535.13_52690748_52743473_1	chr6	+	2959	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	34	292	0	-292	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTCTGTGAAATAATTCT	NA	False	NA	14	True	AATAAA	-16	NA	52690747	52743473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000004535.13_52723652_52743473_1	chr6	+	1319	7	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	32938	292	5790	-292	3prime_fragment	FALSE	canonical	3	527	junction_1	35.6728966521581	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTCTGTGAAATAATTCT	2240	False	NA	14	True	AATAAA	-16	NA	52723651	52743473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000004535.13_52723652_52743765_1	chr6	+	1611	7	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	32938	0	5790	0	3prime_fragment	FALSE	canonical	3	527	junction_1	35.6728966521581	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	2240	False	NA	NA	False	AATAAA	-27	NA	52723651	52743765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000004565.16_3587247_3594267_1	chr8	+	1246	8	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	21822	0	326	0	3prime_fragment	FALSE	canonical	1	71	junction_3	75.4261363243294	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3587246	3594267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ENSMUSG00000004642.14_33797399_33809664_1	chr5	-	1547	7	NIC	ENSMUSG00000004642.14	novel	1906	8	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	419.837270062263	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809664	33797398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33809306_33809424_33809538
ENSMUSG00000004642.14_33797399_33809664_2	chr5	-	1652	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	254	0	-14	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809664	33797398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUSG00000004665.11_79824457_79831222_1	chr10	+	1747	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	39	674	0	-674	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTACATTCCTGAG	1808	False	NA	5	True	NA	NA	NA	79824456	79831222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
ENSMUSG00000004667.19_79871783_79875535_1	chr10	-	1054	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	94	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	1758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5609	False	NA	-19	True	ATTAAA	-19	NA	79875535	79871782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875535_2	chr10	-	1126	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	0	-226	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	1757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5609	False	NA	-19	True	ATTAAA	-19	NA	79875535	79871782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004748.6_4041962_4045445_1	chr11	-	929	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	482	0	-482	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTTTTACTTGCATGT	NA	False	NA	-1	True	TTTAAA	-20	NA	4045445	4041961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUSG00000004768.15_33758991_33779792_1	chr1	+	2454	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	15	1853	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGCTTTTCCTTTCTTT	NA	False	NA	8	True	TATAAA	-18	NA	33758990	33779792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004771.13_64623887_64645040_1	chr9	-	1030	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	1306	0	0	multi-exon	FALSE	canonical	3	899	junction_3	39.0160223497988	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTGTTTACTCTTCAT	NA	False	NA	-4	True	AATAAA	-20	NA	64645040	64623886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUSG00000004771.13_64624052_64645040_1	chr9	-	865	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	1471	0	0	multi-exon	FALSE	canonical	3	899	junction_3	39.0160223497988	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGTGTTTTATTACT	NA	False	NA	-4	True	AATATA	-19	NA	64645040	64624051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUSG00000004788.12_85266289_85273267_1	chr12	+	1436	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	34	135	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85266288	85273267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUSG00000004843.8_65336645_65359612_1	chr16	-	1241	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	631	0	-631	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTATCTGTTGCTTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	65359612	65336644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ENSMUSG00000004846.11_137016232_137025393_1	chr5	+	2812	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	359	109	0	-109	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137016231	137025393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
ENSMUSG00000004865.17_28808564_28841425_1	chr17	-	2453	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	258	1942	0	0	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	-2	True	ATTAAA	-39	NA	28841425	28808563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUSG00000004897.17_87813877_87823030_1	chr3	+	1587	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	249	409	249	-409	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAACCCACAAAAGAAGA	NA	False	NA	68	True	AATAAA	-28	NA	87813876	87823030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
ENSMUSG00000004897.17_87813935_87823439_1	chr3	+	1938	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	307	0	-222	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813934	87823439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
ENSMUSG00000004929.13_80905961_80918054_1	chr10	+	2401	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	92	339	0	-339	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCTGGTCCTCTCTCT	5542	False	NA	10	True	ATTAAA	-16	NA	80905960	80918054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
ENSMUSG00000004934.15_80989100_81003555_1	chr10	-	2369	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	202	0	-7	0	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTTTCTCTGTAG	NA	False	NA	2	True	AATAAA	-37	NA	81003555	80989099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ENSMUSG00000004934.15_80989795_81003555_1	chr10	-	1674	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	202	695	-7	274	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTACAAAAACAAGAGAAAAT	NA	False	NA	-52	True	ATTAAA	-27	NA	81003555	80989794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ENSMUSG00000004937.7_80879911_80895993_1	chr10	-	2155	12	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-15	0	combination_of_known_junctions	TRUE	canonical	3	99	junction_11	260.894741448927	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4791	False	NA	-13	True	AATAAA	-15	NA	80895993	80879910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
ENSMUSG00000004945.16_5483472_5490518_1	chr17	-	595	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	13	172	0	-172	multi-exon	FALSE	canonical	3	677	junction_2	16.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGTATATTGCTTGA	3468	False	NA	NA	False	AATAAA	-16	NA	5490518	5483471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_5483855_5489806_5489908_5490407
ENSMUSG00000004980.17_51438101_51446827_1	chr6	-	1531	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_51439740_51446827_1	chr6	-	1629	11	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	874	junction_10	2893.40520667258	4507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446827	51439739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUSG00000004980.17_51439740_51446827_2	chr6	-	1869	10	ISM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	-2	1636	0	0	5prime_fragment	FALSE	canonical	3	5712	junction_9	757.172925761462	4684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446827	51439739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004994.13_84984931_84997000_1	chr8	-	1603	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	9	507	-1	0	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCCTTGTTTCTAAAC	NA	False	NA	-23	True	ATTAAA	-14	NA	84997000	84984930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUSG00000005078.17_72132631_72147631_2	chr12	+	1250	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	57	junction_1	210.520928233964	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_72132649_72132686_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132631_72147631_3	chr12	+	1247	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.071061071468	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_72132681_72132721_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132631_72147631_4	chr12	+	1249	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	105	junction_1	195.113467772275	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_72132683_72132721_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132631_72147631_5	chr12	+	1231	8	NNC	ENSMUSG00000005078.17	novel	1874	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	105	junction_1	242.461610679013	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_72132683_72132721_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132934_72148235_1	chr12	+	1589	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	303	-600	303	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132933	72148235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005142.11_85809938_85824215_1	chr8	+	3132	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-6	696	0	-696	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTCACCCAGTGCACT	NA	False	NA	14	True	ATTAAA	-16	NA	85809937	85824215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
ENSMUSG00000005148.9_99538896_99550884_1	chr14	+	1153	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2769	1588	2306	-1588	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAGGAACTGGAAATGTA	NA	False	NA	NA	False	NA	NA	NA	99538895	99550884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_99539691_99540853_99540914_99550586
ENSMUSG00000005161.16_85696323_85700946_1	chr8	+	900	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	517	0	6	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	3897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005161.16_85696323_85700946_2	chr8	+	988	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	107	517	0	6	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	4030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005225.16_54592281_54618018_1	chr6	+	1374	12	ISM	ENSMUSG00000005225.16	ENSMUST00000101385.3	1838	14	12149	0	12149	0	3prime_fragment	FALSE	canonical	1	70	junction_1	63.1207684122958	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGCCCTAGTTAATTT	NA	False	NA	NA	False	AATAAA	-15	NA	54592280	54618018	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
ENSMUSG00000005233.17_69024239_69036524_1	chr2	-	1349	7	NNC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	321.127700455753	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036524	69024238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035188_69035266_69035369_69035523_69036407
ENSMUSG00000005262.14_18631071_18653154_1	chr16	+	1086	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	False	NA	53	True	NA	NA	NA	18631070	18653154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005262.14_18631071_18653154_2	chr16	+	1112	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	27	857	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	False	NA	53	True	NA	NA	NA	18631070	18653154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005299.7_33899661_33918264_1	chr5	-	1484	9	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	21897	2644	-7358	217	3prime_fragment	FALSE	canonical	3	324	junction_8	49.848363814673	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTTTAATTTTCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	33918264	33899660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066
ENSMUSG00000005354.17_77799247_77813174_1	chr15	-	798	5	NIC	ENSMUSG00000005354.17	novel	1298	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	503.602211571792	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	2747	False	NA	-5	True	AATAAA	-19	NA	77813174	77799246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_77799437_77799904_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUSG00000005354.17_77799410_77813174_1	chr15	-	1103	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	32	163	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTACCTCTTGCTGTGAA	2747	False	NA	-7	True	AATAAA	-16	NA	77813174	77799409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUSG00000005374.14_135178540_135188678_1	chr5	+	1523	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	29	5936	0	3	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATCTCTCTCTCTGTTTC	9519	False	NA	NA	False	NA	NA	NA	135178539	135188678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
ENSMUSG00000005378.18_135081813_135092951_1	chr5	-	1293	12	ISM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	569	2	-7	0	3prime_fragment	FALSE	canonical	3	942	junction_2	58.9567708278386	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGTCCCTGGCCCTG	NA	False	NA	-3	True	ATTAAA	-14	NA	135092951	135081812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ENSMUSG00000005410.7_75836197_75854325_1	chr8	+	2639	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	742	0	4	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	36	True	NA	NA	NA	75836196	75854325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005413.9_75820369_75827218_1	chr8	+	1450	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	120	-1	120	1	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	11	True	AATAAA	-20	NA	75820368	75827218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUSG00000005413.9_75820369_75827218_2	chr8	+	1607	5	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	120	1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	11	True	AATAAA	-20	NA	75820368	75827218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUSG00000005447.13_24994474_24997069_1	chr7	-	931	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	238	-310	238	0	multi-exon	TRUE	canonical	3	385	junction_2	17.4570902500961	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8841	False	NA	-2	True	ATTAAA	-15	NA	24997069	24994473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
ENSMUSG00000005447.13_24994474_24997307_1	chr7	-	797	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	104	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8603	False	NA	-2	True	ATTAAA	-15	NA	24997307	24994473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ENSMUSG00000005470.9_84682343_84696826_1	chr8	+	1581	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	207	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5923	False	NA	23	True	AATAAA	-16	NA	84682342	84696826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUSG00000005483.11_84334822_84337597_1	chr8	+	1311	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	1685	0	-1685	multi-exon	FALSE	canonical	3	562	junction_2	45.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCACTAGACTACAGTGGT	NA	False	NA	13	True	AATATA	-19	NA	84334821	84337597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUSG00000005483.11_84334822_84338532_1	chr8	+	2246	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	750	0	-750	multi-exon	FALSE	canonical	3	562	junction_2	45.5	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCAGTCCTTCGACTC	NA	False	NA	10	True	ATTAAA	-19	NA	84334821	84338532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUSG00000005510.10_90724980_90735060_1	chr2	-	935	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	111	0	-14	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735060	90724979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUSG00000005566.15_12758804_12764962_1	chr7	+	2520	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	725	0	725	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758803	12764962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ENSMUSG00000005610.18_110671139_110682224_1	chr7	-	3686	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	0	0	0	0	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682224	110671138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ENSMUSG00000005610.18_110671139_110682224_2	chr7	-	3800	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	13	4182	0	0	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682224	110671138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ENSMUSG00000005610.18_110680814_110682224_1	chr7	-	260	2	ISM	ENSMUSG00000005610.18	ENSMUST00000162394.2	716	3	-190	1188	0	-690	5prime_fragment	FALSE	canonical	3	5111	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCACCCCATCCATTAAT	NA	False	NA	NA	False	NA	NA	NA	110682224	110680813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_110680841_110681991
ENSMUSG00000005615.16_32249763_32290648_1	chr16	+	1528	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	21	3240	0	-207	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGAACTAATTTTTT	2510	False	NA	NA	False	AATATA	-1	NA	32249762	32290648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
ENSMUSG00000005667.9_83282965_83294588_1	chr6	-	1793	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	292	0	-292	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	-3	True	TTTAAA	-23	NA	83294588	83282964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUSG00000005667.9_83283384_83294588_1	chr6	-	1374	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	711	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCGTTTTAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	83294588	83283383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUSG00000005674.10_171046680_171050021_1	chr1	-	1550	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	62	3100	-1	-748	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTGGTTTCTCCATT	9571	False	NA	92	True	AAAAAG	-13	NA	171050021	171046679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
ENSMUSG00000005674.10_171046784_171050021_1	chr1	-	1446	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	62	3204	-1	-852	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTTATTTTTGTT	9571	False	NA	-12	True	AGTAAA	-41	NA	171050021	171046783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
ENSMUSG00000005683.9_128173603_128197152_1	chr10	+	1730	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	1196	0	-1196	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAGACTTGAAAGACAAAA	NA	False	NA	6	True	ATTAAA	-45	NA	128173602	128197152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUSG00000005683.9_128173679_128197083_1	chr10	+	1585	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	76	1265	0	-1265	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGCCTTTAAGACTTAAGA	NA	False	NA	26	True	AATAAA	-22	NA	128173678	128197083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUSG00000005687.15_103079065_103085964_1	chr3	+	869	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	94	504	0	-177	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTTTTCAGAATGAGTA	5023	False	NA	18	True	AATAAA	-36	NA	103079064	103085964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_1	chr3	+	1049	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	94	324	0	1	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_2	chr3	+	1131	6	FSM	ENSMUSG00000005687.15	ENSMUST00000155520.8	737	6	-13	-381	0	1	multi-exon	FALSE	canonical	3	3472	junction_3	182.474107752306	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_3	chr3	+	1090	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	-23	338	0	1	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005698.16_106390525_106409554_1	chr8	+	3384	10	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	27314	0	-12118	0	3prime_fragment	FALSE	canonical	3	206	junction_8	80.3768899898749	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106390524	106409554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ENSMUSG00000005732.15_18057841_18066596_1	chr16	-	892	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	193	0	-175	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	2276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGTTGTTTTTTTGT	7133	False	NA	31	True	TATAAA	-15	NA	18066596	18057840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005779.13_94791633_94794272_1	chr3	-	954	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	229	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	1893	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGGATTTTGTGTTT	NA	False	NA	-3	True	AATAAA	-21	NA	94794272	94791632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ENSMUSG00000005813.13_138164717_138195143_1	chr3	-	2553	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	133	0	-14	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195143	138164716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005813.13_138165895_138195143_1	chr3	-	1375	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	133	1178	-14	-453	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGCCTCACCCCCTCA	NA	False	NA	-2	True	AATAAA	-25	NA	138195143	138165894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005823.10_57541944_57554679_1	chr17	-	2103	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	-7	309	-7	0	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGGGGAGGACCACCTG	NA	False	NA	-31	True	AATAAA	-18	NA	57554679	57541943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ENSMUSG00000005846.13_11010834_11021140_1	chr16	-	1884	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1160.20864906921	1704	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_11011602_11012329_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021140_2	chr16	-	1885	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	907.175424049836	1700	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020317_11021014
ENSMUSG00000005873.7_34480045_34506422_1	chr18	-	745	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	2107	0	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	5561	False	NA	-5	True	ATTAAA	-18	NA	34506422	34480044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ENSMUSG00000005881.14_155850143_155860199_1	chr2	+	1335	12	NIC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	758	junction_3	70.826875414575	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850142	155860199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005881.14_155850143_155860199_2	chr2	+	1199	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	178	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850142	155860199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005882.19_155688814_155753692_1	chr2	-	2205	8	ISM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	18538	-27	-1168	0	3prime_fragment	FALSE	canonical	3	315	junction_1	43.4229319646677	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155753692	155688813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660
ENSMUSG00000005882.19_155689867_155771970_1	chr2	-	1347	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	260	1026	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTTTCTTTGTTCCA	NA	False	NA	-4	True	ATTAAA	-20	NA	155771970	155689866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005882.19_155690179_155771970_1	chr2	-	1035	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	260	1338	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTGTTGAGTTTCTTCT	NA	False	NA	-10	True	NA	NA	NA	155771970	155690178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005936.20_29171426_29186905_1	chr17	+	2205	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	30	1618	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCTCTCCAGTATTGAA	NA	False	NA	4	True	AATAAA	-15	NA	29171425	29186905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005936.20_29171426_29186905_2	chr17	+	2384	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	194	1618	0	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCTCTCCAGTATTGAA	NA	False	NA	4	True	AATAAA	-15	NA	29171425	29186905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005947.12_73029271_73038272_1	chr11	+	766	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47862	0	47862	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029270	73038272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
ENSMUSG00000005968.15_94520064_94665453_1	chr3	-	2521	12	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2631	13	NA	NA	-30	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	NA	False	NA	-5	True	AATAAA	-16	NA	94665453	94520063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ENSMUSG00000005973.7_105217274_105229664_1	chr2	-	2082	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	638	0	0	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGTGTCTTGTGGTGT	NA	False	NA	-4	True	AATAAA	-19	NA	105229664	105217273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005973.7_105217689_105229664_1	chr2	-	1667	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	1053	0	-415	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTTGTTTTTAACA	NA	False	NA	-22	True	AATAAA	-15	NA	105229664	105217688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005982.15_3702532_3722634_1	chr16	+	2375	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_6	52.451300163951	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702531	3722634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3720000_3721329
ENSMUSG00000006005.19_150269135_150290453_1	chr1	+	2183	17	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	134	35233	0	739	5prime_fragment	FALSE	canonical	3	414	junction_6	52.1970051224206	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACAGTGAGAAACTTCAA	NA	False	NA	NA	False	TATAAA	-11	NA	150269134	150290453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416
ENSMUSG00000006010.15_150238272_150268501_1	chr1	-	1727	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	330	1216	-2	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	963	False	NA	NA	False	NA	NA	NA	150268501	150238271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ENSMUSG00000006024.14_15832533_15851053_1	chr7	+	1520	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	150	847	0	389	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGAGCTGTCCCTTT	NA	False	NA	30	True	AATAAA	-20	NA	15832532	15851053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUSG00000006024.14_15832533_15851902_1	chr7	+	2369	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	150	-2	0	2	multi-exon	FALSE	canonical	3	1130	junction_8	65.9754499795189	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACATCTCATTCATTC	NA	False	NA	4	True	AATAAA	-19	NA	15832532	15851902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUSG00000006050.13_36800299_36803343_1	chr18	-	889	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	525	565	0	0	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803343	36800298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
ENSMUSG00000006057.16_95963816_95966496_1	chr11	-	577	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	4138	0	0	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	5050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3479	False	NA	-9	True	NA	NA	NA	95966496	95963815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
ENSMUSG00000006095.13_29923562_29931194_2	chr7	-	907	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	503	6	503	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29931194	29923561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006095.13_29923562_29931194_3	chr7	-	858	6	NIC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	503	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_2	312.712391823541	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29931194	29923561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_29923773_29923897_29923971_29926317_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006200.4_36915924_36918734_1	chrX	+	873	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	137	0	137	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915923	36918734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ENSMUSG00000006219.13_141304612_141327199_1	chr4	-	1761	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	36	1239	0	-1239	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTTGGATTTGGGGGA	NA	False	NA	-34	True	NA	NA	NA	141327199	141304611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUSG00000006273.15_69541420_69565357_1	chr8	+	1697	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	122	1006	0	-1006	multi-exon	FALSE	canonical	3	1214	junction_12	88.1479391228044	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTGCCAGTGTTGACA	NA	False	NA	15	True	ATTAAA	-17	NA	69541419	69565357	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUSG00000006273.15_69541420_69566363_1	chr8	+	2703	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	122	0	0	0	multi-exon	FALSE	canonical	3	1214	junction_12	88.1479391228044	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541419	69566363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUSG00000006281.9_51061516_51067528_1	chr14	-	1494	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40489	0	0	0	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGCCCGATTGTGTTC	NA	False	NA	-4	True	TATAAA	-24	NA	51067528	51061515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
ENSMUSG00000006289.15_51153143_51162308_2	chr14	-	1254	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	42	2092	-8	0	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162308	51153142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUSG00000006289.15_51153143_51162308_3	chr14	-	1175	10	NIC	ENSMUSG00000006289.15	novel	3388	11	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	23	junction_5	240.470577754186	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162308	51153142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUSG00000006301.18_74327410_74343374_1	chr1	-	2184	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	190	4	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCCTTGAGTTGCTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	74343374	74327409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
ENSMUSG00000006304.15_74275709_74307163_1	chr1	+	1181	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	53	205	0	16	multi-exon	FALSE	canonical	3	1389	junction_1	306.215936881149	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCACTTGATCAACTTAAT	7881	False	NA	34	True	ATTAAA	-14	NA	74275708	74307163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006304.15_74275709_74307368_1	chr1	+	1593	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	33	-222	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7881	False	NA	14	True	AATAAA	-19	NA	74275708	74307368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006304.15_74275709_74307368_2	chr1	+	1534	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	-221	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7881	False	NA	14	True	AATAAA	-19	NA	74275708	74307368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006333.15_3707041_3709896_1	chr7	+	876	6	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	206	junction_4	6461.44068764854	9946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1313	False	NA	3	True	AATAAA	-18	NA	3707040	3709896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
ENSMUSG00000006335.17_3623323_3632583_1	chr7	-	791	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	300	0	-5	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632583	3623322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006335.17_3623323_3632583_2	chr7	-	821	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	345	0	-5	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632583	3623322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006345.11_75399982_75422025_1	chr10	+	2199	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.844161410238	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399981	75422025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_75400093_75400671_75400744_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006345.11_75399982_75422025_2	chr10	+	2212	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399981	75422025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006356.11_113104192_113109126_1	chr12	+	1103	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	336	0	0	0	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5958	False	NA	30	True	AATAAA	-23	NA	113104191	113109126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ENSMUSG00000006360.12_113115440_113117499_1	chr12	+	458	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-192	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	168.854256683093	243	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115439	113117499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_113115521_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUSG00000006378.16_78915101_78921662_1	chr15	+	1452	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	27	891	27	-891	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCAGTCTGCTTTATTC	659	False	NA	14	True	NA	NA	NA	78915100	78921662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
ENSMUSG00000006378.16_78915101_78921662_2	chr15	+	1720	8	ISM	ENSMUSG00000116378.2	ENSMUST00000171999.9	1736	9	0	5069	0	-5069	5prime_fragment	FALSE	canonical	3	1189	junction_6	79.2711698371289	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCAGTCTGCTTTATTC	659	False	NA	14	True	NA	NA	NA	78915100	78921662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952
ENSMUSG00000006378.16_78915101_78921926_1	chr15	+	1716	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	27	627	27	-627	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGTTCCTAGACCTGTG	659	False	NA	NA	False	GATAAA	-18	NA	78915100	78921926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
ENSMUSG00000006390.16_118285316_118289812_1	chr4	+	1447	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	26	338	0	2	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTGTGTGTGTGTGTA	NA	False	NA	3	True	ATTAAA	-16	NA	118285315	118289812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
ENSMUSG00000006412.11_171173238_171185738_1	chr1	+	713	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	-60	232	0	200	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	2314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173237	171185738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
ENSMUSG00000006412.11_171173238_171185738_2	chr1	+	651	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	1084	0	200	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	2313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173237	171185738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUSG00000006418.18_167345366_167358086_1	chr2	+	2138	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	357	7	0	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	17	True	AATAAA	-18	NA	167345365	167358086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUSG00000006423.16_36078421_36127808_1	chrX	-	1192	7	NIC	ENSMUSG00000006423.16	novel	678	3	NA	NA	0	8969	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	75.5389891968968	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGAGCTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	36127808	36078420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUSG00000006456.11_4850950_4861631_1	chr19	-	2781	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	31	353	-18	0	multi-exon	FALSE	canonical	3	363	junction_1	19	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7796	False	NA	0	True	AATAAA	-27	NA	4861631	4850949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4851834_4852578_4854044_4861199
ENSMUSG00000006498.17_79690467_79700195_1	chr10	+	2833	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	206	71	0	2	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1589	False	NA	33	True	ATTAAA	-17	NA	79690466	79700195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006498.17_79690467_79700269_1	chr10	+	2829	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	4	336	0	3	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1589	False	NA	26	True	AATAAA	-16	NA	79690466	79700269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006641.13_31193381_31205346_1	chr5	-	3081	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	63	junction_17	22.1293773649543	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	810	False	NA	-2	True	AATAAA	-18	NA	31205346	31193380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
ENSMUSG00000006651.9_30134407_30136461_1	chr7	-	962	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8453	-6	-33	0	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136461	30134406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
ENSMUSG00000006678.7_92648060_92675762_1	chrX	-	616	7	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-1	299687	-1	18622	5prime_fragment	FALSE	canonical	3	401	junction_2	32.1645076995678	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACTGGGGCTTTGCTC	4276	False	NA	NA	False	AAGAAA	-5	NA	92675762	92648059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006699.18_137048135_137085010_1	chr4	-	959	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	21	1128	0	938	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGTTGTTTTTTTGTTT	NA	False	NA	1	True	TTTAAA	-25	NA	137085010	137048134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006699.18_137048313_137085010_1	chr4	-	781	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	21	1306	0	760	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACAAACGCCCTGCAC	NA	False	NA	-13	True	NA	NA	NA	137085010	137048312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006699.18_137049747_137085010_1	chr4	-	774	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	674	0	-674	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCGTCTTCTTACTC	NA	False	NA	-20	True	AATAAA	-17	NA	137085010	137049746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006715.12_24935828_24945423_1	chr13	-	933	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	36	-246	0	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	1215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945423	24935827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
ENSMUSG00000006728.13_126899403_126903166_1	chr10	+	1430	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	0	623	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	4500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899402	126903166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006728.13_126899485_126903166_1	chr10	+	1348	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	82	623	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	4474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899484	126903166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006732.15_126877826_126881500_1	chr10	+	1032	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	25	734	0	16	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCAGCTCCCCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	126877825	126881500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006732.15_126877826_126881820_1	chr10	+	1352	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	25	414	0	52	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTGTGTGTGGCTCAGG	NA	False	NA	3	True	NA	NA	NA	126877825	126881820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006740.15_6202213_6208242_1	chr18	-	1551	2	ISM	ENSMUSG00000006740.15	ENSMUST00000168031.2	1959	9	6298	-876	6298	876	3prime_fragment	TRUE	canonical	3	921	junction_1	0	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACAGGAAGGGTCTCA	8673	False	NA	NA	False	NA	NA	NA	6208242	6202212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_6203708_6208186
ENSMUSG00000006740.15_6214569_6241523_1	chr18	-	2273	16	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-53	0	0	0	intron_retention	FALSE	canonical	3	809	junction_12	103.126373391528	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGGAAGAAAATGA	-5	True	NA	NA	False	NA	NA	NA	6241523	6214568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000006740.15_6222778_6241523_1	chr18	-	1468	11	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-53	8209	0	-1918	intron_retention	FALSE	canonical	3	809	junction_7	115.848867063947	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACTCTACGGAACACTA	-5	True	NA	NA	False	AAAAAG	-27	NA	6241523	6222777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000006763.15_46338728_46360085_1	chr7	-	1513	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	19	3196	0	0	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	-12	True	AATAAA	-24	NA	46360085	46338727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ENSMUSG00000006800.15_165915834_165924557_1	chr2	-	1975	11	ISM	ENSMUSG00000006800.15	ENSMUST00000088086.4	3927	21	72648	-6	-4518	0	3prime_fragment	FALSE	canonical	3	857	junction_6	52.4100181263086	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165924557	165915833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493
ENSMUSG00000006818.6_13225733_13234241_1	chr17	+	1153	6	NIC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	0	-262	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	1288.2053563	2968	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13225732	13234241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_13225849_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13226746_13234241_1	chr17	+	1039	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	42	4780	0	-262	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	2923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13226745	13234241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13226883_13234241_1	chr17	+	902	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	179	4780	0	-262	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13226882	13234241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13226883_13234503_1	chr17	+	1164	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	179	4518	0	0	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	1928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAGTGGACATCACCTA	NA	False	NA	31	True	ATTAAA	-28	NA	13226882	13234503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006906.11_83520206_83549428_1	chr6	-	2081	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	283	0	-7	0	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTCCAGAGTGATT	NA	False	NA	-17	True	AATAAA	-13	NA	83549428	83520205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
ENSMUSG00000006930.16_100238153_100246913_1	chr11	-	3652	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	0	-1532	0	0	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2048	False	NA	-2	True	AATAAA	-17	NA	100246913	100238152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ENSMUSG00000006941.6_120321699_120324396_1	chr9	+	893	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	142	0	142	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321698	120324396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000006941.6_120321807_120324396_1	chr9	+	785	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	250	0	250	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321806	120324396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000006998.17_20470454_20482164_1	chr16	+	2306	18	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	759.631330176334	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470453	20482164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_20470602_20470993_20471051_20471342_20471398_20474295_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ENSMUSG00000007029.17_35230595_35235302_1	chr17	+	2271	18	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	10632	-4	404	4	3prime_fragment	FALSE	canonical	0	0	junction_7	410.844593826932	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	NA	False	NA	14	True	AATAAA	-15	NA	35230594	35235302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ENSMUSG00000007038.6_35150229_35154297_1	chr17	+	1874	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	0	600	0	-600	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7923	False	NA	13	True	NA	NA	NA	35150228	35154297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_35150290_35154297_1	chr17	+	1813	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	61	600	0	-600	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7984	False	NA	13	True	NA	NA	NA	35150289	35154297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007039.13_35278077_35281071_1	chr17	+	1231	7	NNC	ENSMUSG00000007039.13	novel	1254	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	162.253659434849	753	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
ENSMUSG00000007039.13_35278228_35281071_1	chr17	+	1129	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	217	-4	151	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278227	35281071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_35278573_35281071_1	chr17	+	1177	7	NNC	ENSMUSG00000007039.13	novel	382	2	NA	NA	-219	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	166.174021903412	257	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278572	35281071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_35278642_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_35278792_35281071_1	chr17	+	1257	7	NIC	ENSMUSG00000007039.13	novel	682	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	154.377693408802	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278791	35281071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35278941_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007041.10_35269231_35277725_1	chr17	+	1177	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	289	0	289	0	multi-exon	TRUE	canonical	3	1084	junction_1	70.1524055182714	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	1965	False	NA	NA	False	AATAAA	-41	NA	35269230	35277725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_1	chr17	+	1000	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	466	0	466	0	multi-exon	FALSE	canonical	3	1084	junction_1	70.1524055182714	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
ENSMUSG00000007050.18_35201135_35204867_1	chr17	+	1095	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-10	-394	0	0	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	273	False	NA	26	True	AATAAA	-20	NA	35201134	35204867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007338.11_6103927_6107781_1	chr19	-	1455	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	34	275	-6	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107781	6103926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007338.11_6104703_6107781_1	chr19	-	679	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	34	1051	-6	258	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATGTGTCCACTTGAG	NA	False	NA	-8	True	CATAAA	-18	NA	6107781	6104702	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007411.17_111594265_111622250_1	chr12	+	1550	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52780	344	3322	122	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTGTTTCCATTG	1604	False	NA	30	True	ATTAAA	-16	NA	111594264	111622250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ENSMUSG00000007411.17_111594265_111622657_1	chr12	+	1957	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52780	-63	3322	2	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	1604	False	NA	NA	False	ATTAAA	-23	NA	111594264	111622657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ENSMUSG00000007415.16_3690920_3697400_1	chr5	-	1052	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	534	959	406	370	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTAGTGTCTATTTTTCT	NA	False	NA	32	True	TATAAA	-1	NA	3697400	3690919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007415.16_3691290_3697400_1	chr5	-	682	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	534	1329	406	0	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTATTTATAATATAAC	NA	False	NA	-36	True	AATAAA	-17	NA	3697400	3691289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007415.16_3693077_3696909_1	chr5	-	851	3	ISM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	897	0	897	0	3prime_fragment	FALSE	canonical	3	421	junction_2	25	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGTTACTTTATGCAT	NA	False	NA	-8	True	NA	NA	NA	3696909	3693076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_3693742_3694880_3694941_3696783
ENSMUSG00000007458.15_122285958_122291027_1	chr6	+	1158	3	ISM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	2721	0	-2721	5prime_fragment	FALSE	canonical	3	1338	junction_2	19.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTCTCCTAGTGCGATG	2943	False	NA	13	True	AATAAA	-17	NA	122285957	122291027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_122286126_122289192_122289373_122290217
ENSMUSG00000007458.15_122285958_122293749_1	chr6	+	1346	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	279	890	0	1	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122294639_1	chr6	+	2236	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	279	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2943	False	NA	6	True	ATTAAA	-15	NA	122285957	122294639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007564.16_21165749_21186167_1	chr17	+	2223	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	176	11	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	28	True	AATAAA	-13	NA	21165748	21186167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ENSMUSG00000007589.10_55916559_55919206_1	chr14	-	1803	8	FSM	ENSMUSG00000007589.10	ENSMUST00000228264.2	3130	8	37	1290	-4	1105	multi-exon	FALSE	canonical	3	280	junction_5	42.7532073030068	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919206	55916558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007589.10_55916559_55919265_1	chr14	-	1708	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	12	1236	-4	1105	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919265	55916558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007603.10_57071757_57077093_1	chr17	+	2298	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	-21	-252	0	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9223	False	NA	12	True	NA	NA	NA	57071756	57077093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUSG00000007610.16_71941372_71945920_1	chr8	+	2051	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	625	124	0	-124	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTAGTAGCATGTG	NA	False	NA	15	True	ATTAAA	-17	NA	71941371	71945920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUSG00000007656.14_74944959_74964839_1	chr9	+	1144	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	63	2737	0	-153	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTAATTTCACCG	NA	False	NA	18	True	AATACA	-26	NA	74944958	74964839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUSG00000007656.14_74944959_74965359_1	chr9	+	1664	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	63	2217	0	1	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	1044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTTTTGTTATGCTGAG	NA	False	NA	5	True	AATAAA	-14	NA	74944958	74965359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUSG00000007721.7_71320871_71326127_1	chr8	-	904	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	452	0	-100	0	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	False	NA	-5	True	AATAAA	-18	NA	71326127	71320870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
ENSMUSG00000007739.11_22940650_22953337_1	chr11	+	1910	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	131	443	0	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1852	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	20	True	ATTAAA	-20	NA	22940649	22953337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
ENSMUSG00000007777.10_51576389_51579480_1	chr11	-	637	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	176	0	-176	multi-exon	FALSE	canonical	3	574	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCTCAGCTTACCTG	5184	False	NA	NA	False	GATAAA	-17	NA	51579480	51576388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51576920_51579374
ENSMUSG00000007812.17_145168539_145174658_1	chr5	+	1277	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	14	474	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
ENSMUSG00000007812.17_145168539_145182625_1	chr5	+	2611	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	6	1487	0	-1486	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCTTATTCACAGTTT	1305	False	NA	5	True	ATTAAA	-20	NA	145168538	145182625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
ENSMUSG00000007815.14_108183638_108214609_1	chr9	+	1363	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	524	0	-524	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGATGTAGTATTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	108183637	108214609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_108183638_108214786_1	chr9	+	1540	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	347	0	-347	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCATTTTGTCACTTTCT	NA	False	NA	NA	False	AATAAA	-28	NA	108183637	108214786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_108183638_108215133_1	chr9	+	1887	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	0	0	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	15	True	AATAAA	-15	NA	108183637	108215133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_108183996_108214609_1	chr9	+	1528	6	FSM	ENSMUSG00000007815.14	ENSMUST00000194701.6	852	6	0	-676	0	-524	multi-exon	FALSE	canonical	3	21	junction_1	597.472543302201	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGATGTAGTATTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	108183995	108214609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108184276_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007833.16_44791259_44803960_1	chr7	-	2570	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	37	930	-10	0	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGAGGATGTGGGAACA	9370	False	NA	-8	True	AATAAA	-20	NA	44803960	44791258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
ENSMUSG00000007837.12_44703008_44711076_1	chr7	-	1142	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	53	-319	0	0	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44711076	44703007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
ENSMUSG00000007891.17_141929654_141941611_1	chr7	-	1957	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	164	6	-17	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8848	False	NA	-8	True	AATAAA	-17	NA	141941611	141929653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUSG00000007987.13_136937004_136942098_1	chr5	+	911	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	0	2160	0	63	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTAGCACTGTGTTTTC	4055	False	NA	6	True	NA	NA	NA	136937003	136942098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
ENSMUSG00000008035.13_10581258_10585936_1	chrX	+	1760	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	0	-1313	0	7	multi-exon	FALSE	canonical	3	13	junction_1	0	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAAGTGTGTGTTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	10581257	10585936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_10581307_10584225
ENSMUSG00000008035.13_10583825_10585936_1	chrX	+	1830	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	196	-7	118	7	multi-exon	FALSE	canonical	3	265	junction_1	0	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAAGTGTGTGTTGCT	1675	False	NA	NA	False	AATAAA	-22	NA	10583824	10585936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_10583944_10584225
ENSMUSG00000008140.19_44139361_44145852_1	chr7	-	1858	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	-22	-174	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTCTTGGTTCATTCC	NA	False	NA	28	True	NA	NA	NA	44145852	44139360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_44139535_44145852_1	chr7	-	1597	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	85	173	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145852	44139534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_44139535_44145852_2	chr7	-	1876	7	NIC	ENSMUSG00000008140.19	novel	1662	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	278	junction_1	282.765509447905	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145852	44139534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_44139535_44145953_1	chr7	-	1698	7	FSM	ENSMUSG00000008140.19	ENSMUST00000118808.9	1872	7	0	174	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145953	44139534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008206.17_4543453_4574057_1	chr8	+	1598	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	254	7623	0	6	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTGCGCCAGAGCTTAA	NA	False	NA	17	True	AATAAA	-18	NA	4543452	4574057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008206.17_4543453_4574676_1	chr8	+	2217	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	254	7004	0	-446	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCCTGGCATGGTGAC	NA	False	NA	6	True	AATAAA	-18	NA	4543452	4574676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008226.15_73143003_73166212_1	chr2	+	1301	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	58	1950	0	-431	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTTCTTAATGGTCAT	NA	False	NA	NA	False	ATTAAA	-15	NA	73143002	73166212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUSG00000008301.12_56706086_56720263_1	chr18	+	1229	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	192	521	192	2	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCATTTCTACTGAGGT	NA	False	NA	17	True	AATAAA	-18	NA	56706085	56720263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008301.12_56706086_56720580_1	chr18	+	1546	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	192	204	192	-204	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAGCTGTTACATTCA	NA	False	NA	NA	False	ATTAAA	-22	NA	56706085	56720580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008333.13_142904959_142913660_1	chr2	+	948	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	1113	0	-1113	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTACTGGTTTATTG	1988	False	NA	13	True	AATAAA	-13	NA	142904958	142913660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008333.13_142904959_142913974_1	chr2	+	1262	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	799	0	-799	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACATTTGCTTTTTTCA	1988	False	NA	14	True	AATAAA	-15	NA	142904958	142913974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008373.17_3632991_3644228_1	chr7	+	1880	14	FSM	ENSMUSG00000008373.17	ENSMUST00000008517.13	3144	14	7	1257	0	0	multi-exon	FALSE	canonical	3	674	junction_1	77.2880572079687	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	2940	False	NA	14	True	ATTAAA	-22	NA	3632990	3644228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUSG00000008393.10_8478558_8490019_1	chr16	-	744	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	2114	0	-2114	multi-exon	FALSE	canonical	3	300	junction_3	44.5146667465405	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCTGCGGAGGCTGAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	8490019	8478557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ENSMUSG00000008450.9_106587277_106607034_1	chr8	+	1955	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	65	-1072	0	1072	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGTCTCTTTATTCCTA	NA	False	NA	28	True	AATAAA	-15	NA	106587276	106607034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUSG00000008475.14_152642426_152650268_1	chr1	+	701	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	133	1080	133	122	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTCAGTGGGGATGT	NA	False	NA	26	True	AATGAA	-23	NA	152642425	152650268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUSG00000008475.14_152642426_152651348_2	chr1	+	1781	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	133	0	133	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642425	152651348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUSG00000008668.16_34170973_34174637_1	chr17	-	532	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9338.29794448646	5190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_34171093_34171194_34171287_34171390_34171566_34174051_34174151_34174591
ENSMUSG00000008682.14_73314466_73316741_1	chrX	+	836	6	NIC	ENSMUSG00000008682.14	novel	855	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	57	junction_1	3675.69005222149	24719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73314485_73314584_73314631_73315265_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008682.14_73314466_73316741_2	chrX	+	835	6	ISM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	3	-110	0	0	intron_retention	FALSE	canonical	3	57	junction_1	3676.97655146181	24606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277
ENSMUSG00000008683.17_117708287_117715411_1	chr7	-	487	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	0	4692	0	0	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	12594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
ENSMUSG00000008690.16_89239939_89255783_1	chr15	+	2053	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	0	1246	0	17	multi-exon	TRUE	canonical	1	369	junction_14	161.21684095061	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_89239939_89255783_2	chr15	+	2036	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	-27	1246	0	17	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_89239939_89255783_3	chr15	+	1960	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	17	1246	0	17	multi-exon	FALSE	canonical	1	145	junction_1	244.22211859964	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008859.9_18056896_18067829_1	chr13	-	489	3	ISM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	50995	1740	50705	-1740	3prime_fragment	FALSE	canonical	3	817	junction_1	49.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGGCTCAATTGACTGA	NA	False	NA	-19	True	AATAAA	-22	NA	18067829	18056895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_18057087_18063091_18063267_18067706
ENSMUSG00000008892.13_23067436_23083774_1	chr8	-	1020	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	334	0	-334	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTTTTTATTCTTC	NA	False	NA	NA	False	AATGAA	-42	NA	23083774	23067435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUSG00000008958.15_95018353_95030244_1	chr3	+	1318	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	20	118	0	-118	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2580	False	NA	45	True	AATAAA	-13	NA	95018352	95030244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUSG00000009013.6_115436481_115438993_1	chr5	-	653	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	65	1312	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	5779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438993	115436480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115436893_115438571_115438710_115438890
ENSMUSG00000009013.6_115436481_115438993_2	chr5	-	701	3	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	367	junction_2	1708.5	5765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438993	115436480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_115436893_115438571_115438710_115438842
ENSMUSG00000009076.11_4654678_4687533_1	chr11	+	656	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	136	0	-136	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCAGAGCTGCCTTCCC	NA	False	NA	13	True	AGTAAA	-18	NA	4654677	4687533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687533_2	chr11	+	647	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	-136	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCAGAGCTGCCTTCCC	NA	False	NA	13	True	AGTAAA	-18	NA	4654677	4687533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_2	chr11	+	783	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009079.17_5019689_5049067_1	chr11	-	2389	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	1631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049067	5019688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009079.17_5019897_5049067_1	chr11	-	2181	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	208	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049067	5019896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009112.5_120813173_120865964_1	chr6	+	3112	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	-26	3839	0	-3839	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGACCTGATGTTTT	NA	False	NA	10	True	AATAAA	-21	NA	120813172	120865964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
ENSMUSG00000009207.16_74351677_74409260_1	chr2	-	2164	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	32	999	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409260	74351676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009291.14_77417554_77433105_1	chr10	+	833	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	1461	0	2	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGTTGATGTCCTTTTTG	1291	False	NA	10	True	NA	NA	NA	77417553	77433105	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ENSMUSG00000009406.14_20800395_20816847_1	chrX	-	2787	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	0	761	0	-761	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGTATTTTTTTTTC	NA	False	NA	-1	True	AATATA	-24	NA	20816847	20800394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
ENSMUSG00000009535.14_68433469_68454978_1	chr18	+	1988	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	327.063064154123	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433468	68454978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454689_68454720
ENSMUSG00000009535.14_68433469_68454978_3	chr18	+	1823	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	430.6471989924	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433468	68454978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454689_68454720
ENSMUSG00000009535.14_68433469_68454978_4	chr18	+	2020	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	43	2945	0	1	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433468	68454978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUSG00000009535.14_68433469_68454978_5	chr18	+	1987	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	327.063064154123	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433468	68454978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454702_68454734
ENSMUSG00000009575.15_103106610_103148269_2	chr15	-	2190	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	6639	-26	1072	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGACTTCGTCAGCTAC	NA	False	NA	-28	True	AATAAA	-18	NA	103148269	103106609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_103107351_103148269_1	chr15	-	1449	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	7380	-26	331	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGAGTCTGTAAGCTGT	NA	False	NA	-6	True	ATTAAA	-13	NA	103148269	103107350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_103107892_103148269_1	chr15	-	908	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	7921	-26	-210	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTGTAGCTCTGTG	NA	False	NA	-11	True	AATATA	-14	NA	103148269	103107891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009585.19_79775860_79792114_1	chr15	+	1945	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGATTAAGTTGTGCAT	7502	False	NA	1	True	NA	NA	NA	79775859	79792114	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009633.4_192954469_192955417_1	chr1	-	763	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	108	0	108	0	multi-exon	FALSE	canonical	3	79	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955417	192954468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_192955111_192955296
ENSMUSG00000009640.12_117531883_117539450_1	chr4	-	1552	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539450	117531882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
ENSMUSG00000009640.12_117531883_117539450_2	chr4	-	1578	11	NNC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	69.5563800093133	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539450	117531882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539373
ENSMUSG00000009863.15_140688714_140706504_1	chr4	+	942	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	200	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	2603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688713	140706504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUSG00000009863.15_140688714_140706504_2	chr4	+	936	8	NNC	ENSMUSG00000009863.15	novel	1142	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	293	junction_1	1023.38288563579	2591	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688713	140706504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_140688788_140693811_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUSG00000009905.6_106651630_106687413_1	chr1	-	2033	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	44	3441	0	-3441	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTTCTTACTCTCAGAG	8305	False	NA	NA	False	AATAAA	-14	NA	106687413	106651629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
ENSMUSG00000009905.6_106652554_106687413_1	chr1	-	1109	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	44	4365	0	-4365	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTTGTATCTTGTTTTT	8305	False	NA	NA	False	NA	NA	NA	106687413	106652553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
ENSMUSG00000009907.18_106698887_106724397_1	chr1	-	2845	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	61	1727	0	-1727	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTTTTATATGTTT	85	False	NA	-1	True	AGTAAA	-14	NA	106724397	106698886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009907.18_106698887_106724458_1	chr1	-	2906	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	0	1727	0	-1727	multi-exon	FALSE	canonical	3	455	junction_4	35.0793386482699	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTTTTATATGTTT	24	False	NA	-1	True	AGTAAA	-14	NA	106724458	106698886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009927.10_44319010_44321491_1	chr9	+	473	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	574	233	0	0	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	2310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ENSMUSG00000009995.18_73326356_73333755_1	chrX	+	2480	8	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	76	junction_6	61.4664335143954	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	8	True	AATAAA	-21	NA	73326355	73333755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
ENSMUSG00000010067.14_107431902_107439462_1	chr9	+	1607	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	120	0	120	0	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	False	NA	9	True	AATAAA	-16	NA	107431901	107439462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUSG00000010095.14_8684951_8700562_1	chr19	-	1937	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	171	705	0	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	1822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	9200	False	NA	12	True	AATAAA	-2	NA	8700562	8684950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
ENSMUSG00000010095.14_8684951_8700733_1	chr19	-	2108	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	0	705	0	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	1822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	9029	False	NA	12	True	AATAAA	-2	NA	8700733	8684950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
ENSMUSG00000010110.18_8718777_8733006_1	chr19	+	1824	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	427	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6549	False	NA	12	True	NA	NA	NA	8718776	8733006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_8718876_8733006_1	chr19	+	1725	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	99	427	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6648	False	NA	12	True	NA	NA	NA	8718875	8733006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_8719252_8733006_1	chr19	+	1895	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010358.14_101339270_101349290_1	chr11	+	1091	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	37	234	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTGTGATGGTCTTCTT	1018	False	NA	5	True	NA	NA	NA	101339269	101349290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
ENSMUSG00000010362.10_101518768_101526926_1	chr11	+	1118	7	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	417.624798380343	1199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_101518891_101519098_101519279_101521063_101521187_101521651_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010362.10_101518768_101526926_2	chr11	+	1332	6	NIC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	866	junction_1	132.095420056866	1253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010376.16_55899722_55909337_1	chr14	-	578	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	244	2	-3	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGACTCTTTCTTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	55909337	55899721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUSG00000010392.9_76619237_76654393_1	chr11	-	2468	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	1809	0	-1809	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCAGTCTTTTCTACTGG	NA	False	NA	NA	False	AATAAA	-19	NA	76654393	76619236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010392.9_76620523_76654393_1	chr11	-	1182	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	3095	0	-3095	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACACTTGTGATGAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	76654393	76620522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010392.9_76620717_76654393_1	chr11	-	988	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	3289	0	-3289	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCCGTTGCTGTGTCTC	NA	False	NA	NA	False	AATACA	-35	NA	76654393	76620716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010406.13_54664366_54667203_1	chr14	+	487	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
ENSMUSG00000010517.8_109584744_109819244_1	chr4	+	1797	16	ISM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	50959	1913	50550	-1913	3prime_fragment	FALSE	canonical	3	1050	junction_7	122.804922087386	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCATCCATGAGTATAT	NA	False	NA	24	True	AATAAA	-16	NA	109584743	109819244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
ENSMUSG00000010538.15_88190064_88204203_1	chr3	-	481	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	103	0	0	0	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010554.15_74661656_74708965_2	chr11	+	2198	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	0	10386	0	245	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAGTGGATCCATTTTT	8494	False	NA	6	True	AAAAAG	-5	NA	74661655	74708965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010554.15_74661656_74709517_1	chr11	+	2750	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	0	9834	0	797	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGATCCTGTTTGAATC	8494	False	NA	101	True	AATATA	-19	NA	74661655	74709517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010592.10_50586425_50600627_1	chr17	-	2888	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600627	50586424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010608.16_83679065_83710790_2	chr12	+	1108	11	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	131.960600180508	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGGAAATTGAGAAAGAAC	4020	False	NA	6	True	NA	NA	NA	83679064	83710790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000010751.16_143192071_143203393_1	chr7	-	639	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	5	3526	-4	924	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTAGCTTCCTTTTATTGC	NA	False	NA	-3	True	GATAAA	-17	NA	143203393	143192070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010755.18_143111444_143153793_1	chr7	-	2711	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	34	477	0	0	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
ENSMUSG00000010911.13_102904040_102922986_1	chr2	+	857	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	280	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4613	False	NA	22	True	AATAAA	-44	NA	102904039	102922986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
ENSMUSG00000010914.11_102852137_102903820_1	chr2	-	1751	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	38	717	-13	-717	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGTTTGGTTCATTTG	NA	False	NA	0	True	ATTAAA	-16	NA	102903820	102852136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ENSMUSG00000011114.19_37560478_37568533_1	chr9	-	1490	9	FSM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	75	419	0	0	multi-exon	FALSE	canonical	3	1493	junction_6	94.6836839165017	1549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUSG00000011179.9_17594973_17601080_1	chr12	+	2025	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	178	5	0	2	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	924	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCATCAGGGAATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	17594972	17601080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
ENSMUSG00000011254.17_45838690_45846311_1	chr11	-	1220	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	10	1020	-1	-1020	multi-exon	FALSE	canonical	3	110	junction_3	12.8	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGAGTCATTTTTAG	6311	False	NA	-1	True	TATAAA	-18	NA	45846311	45838689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011257.20_123177395_123192615_1	chr4	+	2318	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	691	10	507	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	NA	False	NA	-2	True	AATAAA	-21	NA	123177394	123192615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011306.8_70495463_70524605_1	chr8	+	2289	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	392	0	-392	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2157	False	NA	11	True	ATTAAA	-16	NA	70495462	70524605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70495684_70524605_1	chr8	+	2068	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	221	392	0	-392	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2378	False	NA	11	True	ATTAAA	-16	NA	70495683	70524605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011958.18_69896786_69914651_1	chr9	+	1442	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	886	0	254	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACATTTGTTTATTTG	NA	False	NA	NA	False	AGTAAA	-24	NA	69896785	69914651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUSG00000012117.14_133697885_133728182_1	chr4	-	1657	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	381	0	347	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATAGGCAGCCAACATTA	NA	False	NA	NA	False	NA	NA	NA	133728182	133697884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
ENSMUSG00000012117.14_133698053_133728182_1	chr4	-	1489	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	549	0	179	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAGCTATATGCCCGT	NA	False	NA	-21	True	AATACA	-23	NA	133728182	133698052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
ENSMUSG00000012123.18_133806149_133819815_1	chr4	+	1879	15	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	10386	0	0	0	3prime_fragment	FALSE	canonical	3	24	junction_2	42.4615071781106	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133806148	133819815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_133809626_133819815_1	chr4	+	1145	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13863	0	0	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133809625	133819815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012396.13_122684448_122691592_1	chr6	+	2182	5	NNC	ENSMUSG00000012396.13	novel	2011	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	1386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUSG00000012396.13_122684527_122691592_1	chr6	+	1251	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	0	0	intron_retention	FALSE	canonical	1	1	junction_2	2270.5	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_122684893_122688496_122688557_122690767
ENSMUSG00000012396.13_122684527_122691592_2	chr6	+	2103	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUSG00000012405.17_4198629_4200736_1	chr14	+	899	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	-97	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	16277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198628	4200736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012405.17_4198667_4200736_1	chr14	+	747	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	38	1137	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	17746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012422.15_90237853_90252821_1	chr13	+	523	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7555	0	41	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTGTGTCAGGACTGC	NA	False	NA	9	True	NA	NA	NA	90237852	90252821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_90237853_90253045_1	chr13	+	747	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7331	0	265	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTACCTCTATTCTTG	NA	False	NA	5	True	TTTAAA	-17	NA	90237852	90253045	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_90237853_90253574_1	chr13	+	1276	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	6802	0	794	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAGCATTTATTAATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	90237852	90253574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012429.10_17869998_17871921_1	chr13	+	903	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	1769	0	80	multi-exon	FALSE	canonical	3	374	junction_1	0	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTTTTGTGAATATG	NA	False	NA	19	True	AATAAA	-20	NA	17869997	17871921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_17870406_17871426
ENSMUSG00000012483.5_8255936_8259140_1	chr6	-	574	4	NNC	ENSMUSG00000012483.5	novel	670	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	677.807412831174	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	-15	True	NA	-11	True	AATAAA	-14	NA	8259140	8255935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_8256185_8256694_8256804_8257686_8257762_8258999
ENSMUSG00000012535.15_29540826_29609615_1	chr6	-	3980	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	271	0	-3	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	-2	True	TTTAAA	-5	NA	29609615	29540825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUSG00000012535.15_29541570_29609615_1	chr6	-	3236	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	271	744	-3	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	10	True	NA	NA	False	AAAAAG	-9	NA	29609615	29541569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUSG00000013089.16_22200059_22231650_1	chr16	-	3388	8	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	23614	-7	-11071	0	3prime_fragment	TRUE	canonical	3	304	junction_7	264.973159980788	267	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	NA	False	NA	-13	True	AATAAA	-22	NA	22231650	22200058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594
ENSMUSG00000013089.16_22200066_22230497_1	chr16	-	3152	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24767	0	-9918	0	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	247	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGCATTCCTGCAACCTG	NA	False	NA	-20	True	AATAAA	-15	NA	22230497	22200065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
ENSMUSG00000013155.11_106430283_106434842_1	chr8	-	1553	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	-277	-1	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434842	106430282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUSG00000013155.11_106430283_106434842_2	chr8	-	1320	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434842	106430282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
ENSMUSG00000013155.11_106430283_106434842_3	chr8	-	1433	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434842	106430282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
ENSMUSG00000013415.10_95853532_95873437_1	chr11	-	2402	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	730	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95873437	95853531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ENSMUSG00000013415.10_95853532_95873437_2	chr11	-	2484	15	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	730	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	223.647955866503	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95873437	95853531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95871874_95871957_95873327
ENSMUSG00000013415.10_95853532_95896770_1	chr11	-	2839	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	-4	5543	-4	730	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95896770	95853531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000013415.10_95853955_95873437_1	chr11	-	1979	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	307	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTTTGTTTCTTAACC	NA	False	NA	NA	False	AATAAA	-30	NA	95873437	95853954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ENSMUSG00000013415.10_95853955_95896770_1	chr11	-	2416	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	-4	5966	-4	307	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTTTGTTTCTTAACC	NA	False	NA	NA	False	AATAAA	-30	NA	95896770	95853954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000013465.20_25089724_25101393_1	chr2	-	2529	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	108	0	0	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101393	25089723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ENSMUSG00000013495.16_108777698_108792982_1	chr5	+	1436	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	3666	0	0	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACACTTTTCCTGATAC	NA	False	NA	28	True	ATTAAA	-36	NA	108777697	108792982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ENSMUSG00000013495.16_108777698_108795129_1	chr5	+	2437	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	1519	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTTGAACATTGAAAA	NA	False	NA	NA	False	AATAAA	-25	NA	108777697	108795129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUSG00000013523.14_170189068_170191729_1	chr2	-	1326	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	-14	-941	-14	0	multi-exon	FALSE	canonical	3	30	junction_2	23.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTGAGGTGGTTTTTT	4132	False	NA	-3	True	AATAAA	-18	NA	170191729	170189067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_170190069_170191101_170191384_170191686
ENSMUSG00000013539.15_18118689_18161774_1	chr16	-	1492	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	132	-2	-4	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161774	18118688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
ENSMUSG00000013662.7_32649958_32689720_1	chr19	-	2840	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	920	0	264	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGCACTGAATTTTTAT	NA	False	NA	NA	False	ATTAAA	-20	NA	32689720	32649957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013662.7_32650222_32689720_1	chr19	-	2576	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	1184	0	0	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTTCCCCACTTAGT	NA	False	NA	-18	True	AATAAA	-17	NA	32689720	32650221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013662.7_32650670_32689720_1	chr19	-	2128	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	1632	0	-448	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTGTTGTATCTGTAG	NA	False	NA	NA	False	TATAAA	-26	NA	32689720	32650669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013701.14_31902119_31923828_1	chr14	-	1158	7	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1620.99120053818	3889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923828	31902118	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915457_31915810_31915905_31920925_31920985_31923599
ENSMUSG00000013701.14_31902248_31923828_1	chr14	-	1017	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	27	129	-2	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	1644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31923828	31902247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUSG00000013766.12_35295878_35297780_1	chr17	+	1002	4	NIC	ENSMUSG00000013766.12	novel	464	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295877	35297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013766.12_35295878_35297780_2	chr17	+	1033	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	-29	-254	0	0	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295877	35297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013973.13_171156976_171169259_1	chr1	+	1660	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111300.8	2563	6	263	640	0	9	multi-exon	FALSE	canonical	3	76	junction_1	69.9674209900579	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTGTGGCCCTTTGCAG	1455	False	NA	27	True	TTTAAA	-7	NA	171156975	171169259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171157095_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_171157178_171169259_1	chr1	+	1624	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTGTGGCCCTTTGCAG	1657	False	NA	27	True	TTTAAA	-7	NA	171157177	171169259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_171157178_171169259_2	chr1	+	1591	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	0	-742	0	9	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTGTGGCCCTTTGCAG	1657	False	NA	27	True	TTTAAA	-7	NA	171157177	171169259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013997.11_171169812_171173213_2	chr1	-	1367	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	1	1673	0	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
ENSMUSG00000014075.16_32238613_32247917_1	chr16	+	833	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238612	32247917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
ENSMUSG00000014177.11_62770316_62786012_1	chr11	+	1802	7	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	179.477637108979	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9276	False	NA	11	True	TATAAA	-19	NA	62770315	62786012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_62770422_62772762_62772846_62774400_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014177.11_62770384_62786012_1	chr11	+	1682	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	103	-1	-56	1	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9344	False	NA	11	True	TATAAA	-19	NA	62770383	62786012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014177.11_62770440_62786012_1	chr11	+	1747	7	NIC	ENSMUSG00000014177.11	novel	788	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	171.994831963702	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9400	False	NA	11	True	TATAAA	-19	NA	62770439	62786012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_62770543_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014195.17_100473655_100510446_1	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	548	11	0	0	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGACCGTTCTTTGGTCC	5930	False	NA	-32	True	AATAAA	-4	NA	100510446	100473654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000014226.11_160030491_160040385_1	chr1	-	1484	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	554	-10	-554	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	5808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7356	False	NA	-5	True	AATAAA	-20	NA	160040385	160030490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014226.11_160030733_160040385_1	chr1	-	1242	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	796	-10	-796	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	2215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAATTTGTGCAAAGTTA	7356	False	NA	-24	True	AATAAA	-20	NA	160040385	160030732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014226.11_160030936_160040385_1	chr1	-	1039	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	999	-10	-999	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCATTAGCACCCCAGA	7356	False	NA	-17	True	AATAAA	-19	NA	160040385	160030935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014232.15_3726903_3759011_1	chr16	+	1565	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	214	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3308	False	NA	7	True	AATACA	-17	NA	3726902	3759011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUSG00000014243.6_62158050_62172201_1	chr11	-	607	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_62158433_62159529_62159635_62172082
ENSMUSG00000014245.9_62349286_62404730_1	chr11	+	1661	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	513	0	-513	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62349285	62404730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ENSMUSG00000014245.9_62402517_62404730_1	chr11	+	1254	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53083	-513	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402516	62404730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_62402636_62402963_62403098_62403729
ENSMUSG00000014294.5_36875514_36877610_1	chr18	-	443	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	129	0	-129	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	2021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877610	36875513	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUSG00000014301.14_4434328_4442821_1	chr16	-	480	4	NIC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	586.024648704207	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442821	4434327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_4434498_4434676_4434743_4434989_4435127_4442714
ENSMUSG00000014402.16_46539122_46569717_1	chr7	-	1403	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_2	371.517940679738	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569717	46539121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_46539453_46540669_46540789_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569717_2	chr7	-	1365	8	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	409.120460280842	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569717	46539121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569717_3	chr7	-	1447	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569717	46539121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569717_4	chr7	-	1524	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	425	0	212	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569717	46539121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014551.9_92151098_92160975_1	chr6	-	1442	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	39	4592	-23	721	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAAGACTCTTTAGATG	NA	False	NA	-2	True	AATAAA	-18	NA	92160975	92151097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
ENSMUSG00000014551.9_92151819_92160975_1	chr6	-	721	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	39	5313	-23	0	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTAAGTGTGGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	92160975	92151818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
ENSMUSG00000014554.14_83457199_83483889_1	chr6	-	932	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483889	83457198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
ENSMUSG00000014592.22_151876687_151946195_1	chr4	-	576	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-34	1656	0	0	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
ENSMUSG00000014606.15_70535022_70538305_1	chr11	-	1609	8	NIC	ENSMUSG00000014606.15	novel	1711	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	260.48878702022	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70538305	70535021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70538116
ENSMUSG00000014606.15_70535149_70537810_1	chr11	-	1510	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	74	127	-6	-127	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATCTGGATAGTCTT	NA	False	NA	-7	True	AATAAA	-18	NA	70537810	70535148	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUSG00000014633.16_117616257_117648167_1	chr8	-	599	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	27	833	-6	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648167	117616256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUSG00000014748.14_83747398_83752772_1	chr6	-	1430	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	23	1531	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9735	False	NA	NA	False	AAAAAG	-38	NA	83752772	83747397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014748.14_83747733_83752772_1	chr6	-	1095	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	23	1866	0	-335	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCCAGGAGTTCATCTTC	9735	False	NA	-14	True	AATAAA	-28	NA	83752772	83747732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014767.18_15720190_15737689_1	chr17	+	1802	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	40	10952	0	0	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720189	15737689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_15720190_15737689_2	chr17	+	1897	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720189	15737689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014769.11_15695981_15718560_1	chr17	-	1060	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	698	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	2774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTTTTTCTTTATCTG	NA	False	NA	-21	True	NA	NA	NA	15718560	15695980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014769.11_15696221_15718560_1	chr17	-	820	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	938	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	2509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718560	15696220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014771.14_15741837_15747552_1	chr17	-	1024	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747552	15741836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747364_15747448
ENSMUSG00000014856.13_106053020_106055689_1	chr8	+	979	4	ISM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	-5	0	0	intron_retention	FALSE	canonical	3	392	junction_2	12.9614813968157	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	1	True	NA	18	True	AATAAA	-20	NA	106053019	106055689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953
ENSMUSG00000014867.10_26810052_26823463_1	chr2	-	2804	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	0	-68	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823463	26810051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014867.10_26810838_26823463_1	chr2	-	2018	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	786	-68	-786	multi-exon	FALSE	canonical	3	778	junction_1	38.262252939418	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCGTGTTTCTCTTTTTGG	NA	False	NA	-1	True	TTTAAA	-20	NA	26823463	26810837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014867.10_26811738_26823463_1	chr2	-	1118	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	1686	-68	236	multi-exon	FALSE	canonical	3	778	junction_1	38.262252939418	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCTTGACTGTCC	NA	False	NA	-3	True	GATAAA	-14	NA	26823463	26811737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014873.16_26806393_26810184_1	chr2	+	1122	6	NIC	ENSMUSG00000014873.16	novel	2519	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	115.994827470883	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_26806393_26810184_2	chr2	+	1302	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	113.91821627817	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809614
ENSMUSG00000014905.5_44252342_44256854_1	chr12	-	2206	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	255	0	-3	0	multi-exon	FALSE	canonical	3	92	junction_1	7	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	AATAAA	-16	NA	44256854	44252341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014905.5_44252678_44256854_1	chr12	-	1870	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	255	336	-3	-336	multi-exon	FALSE	canonical	3	92	junction_1	7	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTGTTGTCATTTTA	NA	False	NA	NA	False	TATAAA	-15	NA	44256854	44252677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014932.16_32768515_32844401_1	chr5	+	4137	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	-1480	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	32768514	32844401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ENSMUSG00000014932.16_32821680_32844401_1	chr5	+	2572	2	ISM	ENSMUSG00000014932.16	ENSMUST00000168707.6	2259	13	53001	0	24805	0	intron_retention	FALSE	canonical	3	877	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	32821679	32844401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_32821745_32841894
ENSMUSG00000014956.16_32616674_32650100_1	chr5	+	2708	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	487	2767	108	0	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGAGTGATTATTCTGT	3182	False	NA	23	True	AGTAAA	-20	NA	32616673	32650100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014959.13_70491920_70521786_1	chr2	+	1937	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	301	0	-279	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTTGGTCTCTGTGA	NA	False	NA	15	True	ACTAAA	-20	NA	70491919	70521786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUSG00000015013.10_123338380_123342328_1	chr8	+	593	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	-5	1071	0	-1071	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5517	False	NA	24	True	ACTAAA	-16	NA	123338379	123342328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
ENSMUSG00000015112.16_6108919_6217118_1	chr6	-	1550	11	ISM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	0	67701	0	6069	5prime_fragment	FALSE	canonical	3	190	junction_2	147.487084180277	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTAGTGAGTTTTTG	20	False	6217138	NA	False	AATAAA	-14	NA	6217118	6108918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUSG00000015120.16_25479484_25492385_1	chr17	-	2497	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	123	-1796	-28	1406	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	1789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4719	False	NA	-1	True	ATTAAA	-19	NA	25492385	25479483	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_25480895_25492385_1	chr17	-	1086	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	123	-385	-28	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	1424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4719	False	NA	NA	False	AATAAA	-9	NA	25492385	25480894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_25480895_25492583_1	chr17	-	1123	7	NIC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4521	False	NA	NA	False	AATAAA	-9	NA	25492583	25480894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015120.16_25480895_25493276_1	chr17	-	1136	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	8	-254	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	3828	False	NA	NA	False	AATAAA	-9	NA	25493276	25480894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUSG00000015120.16_25481153_25492385_1	chr17	-	828	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	123	-127	-28	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4719	False	NA	NA	False	GATAAA	-15	NA	25492385	25481152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_25481153_25492583_1	chr17	-	865	7	NIC	ENSMUSG00000015120.16	novel	1559	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4521	False	NA	NA	False	GATAAA	-15	NA	25492583	25481152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015126.10_25459144_25461773_1	chr17	+	973	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	185.290312752718	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTGCTTTGTACGTGGC	4603	False	NA	29	True	AATAAA	-19	NA	25459143	25461773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_25459144_25461773_2	chr17	+	1172	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	166.883672059312	471	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTGCTTTGTACGTGGC	4603	False	NA	29	True	AATAAA	-19	NA	25459143	25461773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_25459339_25459417_25459617_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015149.15_28466192_28488085_1	chr7	+	1764	16	NNC	ENSMUSG00000015149.15	novel	1843	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	27.6903513079115	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341_28487681_28487712
ENSMUSG00000015289.5_73395767_73397224_1	chrX	-	650	4	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	667.988522855495	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_73396105_73396479_73396609_73396930_73397052_73397162
ENSMUSG00000015289.5_73395767_73397224_2	chrX	-	1136	2	FSM	ENSMUSG00000015289.5	ENSMUST00000114153.2	1997	2	-24	885	0	0	multi-exon	FALSE	canonical	3	1433	junction_1	0	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73396609_73396930
ENSMUSG00000015289.5_73395767_73397224_3	chrX	-	720	3	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	696.5	1081	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_73396105_73396520_73396609_73396930
ENSMUSG00000015290.16_73409324_73412164_1	chrX	-	2327	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	115	0	0	0	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGAATCCTGTGTAATA	NA	False	NA	-6	True	AATAAA	-20	NA	73412164	73409323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
ENSMUSG00000015291.11_73348862_73355468_1	chrX	+	2667	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6206	False	NA	15	True	AATAAA	-16	NA	73348861	73355468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015291.11_73348862_73355468_2	chrX	+	2408	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	258	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6206	False	NA	15	True	AATAAA	-16	NA	73348861	73355468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015312.10_80765907_80767593_1	chr10	+	839	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	445	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCGTGATACCTTCTGG	248	False	NA	50	True	NA	NA	NA	80765906	80767593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUSG00000015335.17_29980956_29983636_1	chr2	-	1241	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	-8	-387	-8	0	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983636	29980955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUSG00000015341.18_23731362_23747082_1	chr8	-	1789	6	NNC	ENSMUSG00000015341.18	novel	1792	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	521.646393642283	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747082	23731361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_23732648_23734746_23734815_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000015341.18_23732425_23747082_1	chr8	-	721	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	8	1063	0	-143	multi-exon	FALSE	canonical	3	715	junction_5	234.329170185873	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAAGCCATTTAAAACAC	NA	False	NA	NA	False	AATAAA	-22	NA	23747082	23732424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000015354.9_95519654_95577601_1	chr9	+	1890	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	0	2548	0	865	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGGCAGCCAGATAACC	8375	False	NA	NA	False	AATAAA	-15	NA	95519653	95577601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ENSMUSG00000015354.9_95519792_95577227_1	chr9	+	1378	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	138	2922	138	491	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACGCTATTTAATGCTG	8513	False	NA	NA	False	NA	NA	NA	95519791	95577227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ENSMUSG00000015354.9_95519792_95577601_1	chr9	+	1752	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	138	2548	138	865	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGGCAGCCAGATAACC	8513	False	NA	NA	False	AATAAA	-15	NA	95519791	95577601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ENSMUSG00000015357.11_65201577_65237542_1	chr9	+	2453	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	35	397	0	-397	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGGGATCCCATTGTTT	6186	False	NA	19	True	AATAAA	-15	NA	65201576	65237542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ENSMUSG00000015357.11_65201577_65237542_2	chr9	+	2411	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	0	398	0	-397	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGGGATCCCATTGTTT	6186	False	NA	19	True	AATAAA	-15	NA	65201576	65237542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ENSMUSG00000015478.14_34820065_34822635_2	chr17	-	1358	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	-285	-223	0	0	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015478.14_34820065_34822635_3	chr17	-	1154	5	NIC	ENSMUSG00000015478.14	novel	1238	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	17	junction_2	458.87927333886	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_34820641_34820714_34820833_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015478.14_34820065_34822635_4	chr17	-	1209	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	29	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015542.18_115075620_115078181_1	chr11	-	646	3	ISM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	-23	1962	0	0	5prime_fragment	FALSE	canonical	2	2	junction_1	2.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTTGTTTAGGCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	115078181	115075619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_115075943_115077574_115077661_115077944
ENSMUSG00000015568.17_69333207_69357680_1	chr8	+	2145	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	64	1906	0	-1906	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTAACCAGGAACGTG	NA	False	NA	NA	False	NA	NA	NA	69333206	69357680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ENSMUSG00000015568.17_69333309_69357680_1	chr8	+	2043	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	166	1906	0	-1906	multi-exon	FALSE	canonical	3	87	junction_5	14.4871164560059	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTAACCAGGAACGTG	NA	False	NA	NA	False	NA	NA	NA	69333308	69357680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ENSMUSG00000015575.16_26895386_26918621_1	chr17	+	765	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	971	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895385	26918621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
ENSMUSG00000015656.18_40712572_40716496_1	chr9	+	2102	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	292	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	26113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	10	True	AATAAA	-20	NA	40712571	40716496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015656.18_40712572_40716496_2	chr9	+	2201	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	3928	junction_3	6242.18814002832	26128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	10	True	AATAAA	-20	NA	40712571	40716496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715992_40716227
ENSMUSG00000015659.13_6094341_6130016_1	chr17	-	2137	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	0	1870	0	0	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2593	False	NA	-19	True	AATATA	-15	NA	6130016	6094340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015668.14_99666492_99669541_1	chrX	-	1008	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.783314041669	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669476
ENSMUSG00000015668.14_99666492_99669541_2	chrX	-	993	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	633	0	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000015671.12_14787825_14800174_1	chr13	+	864	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	2047	0	-2047	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	3043	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015672.5_14784958_14787617_1	chr13	-	691	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	133	2189	-5	0	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787617	14784957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14785326_14786007_14786190_14787476
ENSMUSG00000015672.5_14784958_14787617_2	chr13	-	721	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	-7	460	-5	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787617	14784957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14785326_14786007_14786190_14787446
ENSMUSG00000015697.15_95230836_95235913_1	chr3	-	1976	8	ISM	ENSMUSG00000015697.15	ENSMUST00000124638.8	5652	21	28553	0	28487	0	3prime_fragment	FALSE	canonical	3	215	junction_2	13.7573727914326	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	5257	False	NA	-4	True	ATTAAA	-15	NA	95235913	95230835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858
ENSMUSG00000015711.9_95160985_95189042_1	chr3	-	2795	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	345	0	345	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4695	False	NA	NA	False	ATTAAA	-19	NA	95189042	95160984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ENSMUSG00000015711.9_95160985_95189156_1	chr3	-	2909	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	231	0	231	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4581	False	NA	NA	False	ATTAAA	-19	NA	95189156	95160984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ENSMUSG00000015714.12_95222558_95230910_1	chr3	+	2053	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	163	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4481	False	NA	45	True	AATAAA	-31	NA	95222557	95230910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015733.14_17637034_17666116_1	chr6	+	1630	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	52	855	0	431	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTAATGCTTTTTTCT	-4	True	NA	27	True	ATTAAA	-22	NA	17637033	17666116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015733.14_17637034_17666381_1	chr6	+	1895	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	52	590	0	-590	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGTATATTGTCAT	-4	True	NA	32	True	AGTAAA	-39	NA	17637033	17666381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015733.14_17637034_17666723_1	chr6	+	2237	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	52	248	0	-248	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	1760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATAGATTTTTAAAAAT	-4	True	NA	-18	True	AATAAA	-19	NA	17637033	17666723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015747.6_95907144_95965154_1	chr3	-	2013	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	624	0	-12	0	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	False	NA	-5	True	AATAAA	-26	NA	95965154	95907143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
ENSMUSG00000015747.6_95964199_95965154_1	chr3	-	389	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	-123	0	-12	0	multi-exon	FALSE	canonical	3	103	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATCATAATTATC	NA	False	NA	NA	False	AATAAA	-16	NA	95965154	95964198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95964427_95964993
ENSMUSG00000015748.14_95737934_95741448_1	chr3	-	543	4	ISM	ENSMUSG00000015748.14	ENSMUST00000160155.8	2548	13	15438	4	-1328	0	3prime_fragment	FALSE	canonical	3	427	junction_1	21.0449254902195	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95741448	95737933	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395
ENSMUSG00000015748.14_95737934_95763098_1	chr3	-	2336	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	99	498	-5	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95763098	95737933	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
ENSMUSG00000015749.13_95836595_95852878_1	chr3	+	1044	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	-42	-124	0	1	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	13	True	ATTAAA	-16	NA	95836594	95852878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUSG00000015749.13_95836595_95852878_2	chr3	+	1413	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	37	1824	0	1	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	1090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	13	True	ATTAAA	-16	NA	95836594	95852878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUSG00000015749.13_95836595_95854702_1	chr3	+	3201	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	5	-1825	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836594	95854702	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUSG00000015749.13_95836853_95852878_1	chr3	+	1155	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	295	1824	0	1	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	13	True	ATTAAA	-16	NA	95836852	95852878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUSG00000015750.16_95801281_95804780_1	chr3	+	2043	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	0	820	0	23	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGACTTGGCTTTAAGA	NA	False	NA	3	True	AATAAA	-18	NA	95801280	95804780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
ENSMUSG00000015757.11_7668685_7697422_1	chr10	+	1964	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	30	1477	0	-1477	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCCTTCTGTGACTTT	1152	False	NA	NA	False	NA	NA	NA	7668684	7697422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015757.11_7668685_7698327_1	chr10	+	2869	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	30	572	0	-572	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1152	False	NA	10	True	AGTAAA	-15	NA	7668684	7698327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015759.12_47013024_47025791_1	chr14	-	1461	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	77	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025791	47013023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000015759.12_47013127_47025791_1	chr14	-	1358	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	77	103	0	-103	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	AATAAA	-14	NA	47025791	47013126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000015759.12_47013744_47025791_1	chr14	-	741	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	77	720	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTCTGGTGTTGACAG	NA	False	NA	NA	False	TATAAA	-14	NA	47025791	47013743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000015776.13_26795274_26800689_1	chr2	-	1407	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	-108	-326	0	0	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGTCTTTCTTGAT	NA	False	NA	-4	True	AATAAA	-18	NA	26800689	26795273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
ENSMUSG00000015790.17_26803393_26806347_1	chr2	-	980	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	195	-2	-3	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_3	chr2	-	944	9	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	108.788498932562	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_4	chr2	-	1020	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	133	-2	-3	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUSG00000015804.15_45650831_45682947_1	chr5	+	1974	15	Fusion	ENSMUSG00000039682.13_ENSMUSG00000015804.15	novel	2267	13	NA	NA	-15	0	multi-exon	FALSE	canonical	3	45	junction_12	689.258030532152	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTGTTTGTATTCATCT	NA	False	NA	29	True	AGTAAA	-18	NA	45650830	45682947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45679777_45679845_45680763_45680877_45682494
ENSMUSG00000015804.15_45677645_45682943_1	chr5	+	811	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	74	3675	0	3	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGTTGTTTGTATTC	7406	False	NA	25	True	AGTAAA	-14	NA	45677644	45682943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
ENSMUSG00000015837.16_50090979_50101618_1	chr11	-	1887	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	786	0	0	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101618	50090978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUSG00000015839.7_75521547_75534886_1	chr2	-	1349	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	-53	151	-53	-151	multi-exon	FALSE	canonical	3	19	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	75534886	75521546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_75522717_75534707
ENSMUSG00000015880.14_45827261_45857469_1	chr5	+	3284	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	419	0	0	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATACTCAGTATTTAT	NA	False	NA	18	True	ATTAAA	-25	NA	45827260	45857469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
ENSMUSG00000015889.9_93289313_93320737_1	chr10	+	1907	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	22	True	AATACA	-21	NA	93289312	93320737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
ENSMUSG00000015932.9_143757469_143784252_1	chr2	+	690	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	992	229	-992	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTGTCTTGTCATCTT	NA	False	NA	18	True	AGTAAA	-30	NA	143757468	143784252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015932.9_143757469_143784373_1	chr2	+	811	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	871	229	-871	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGTTTTCATGAGGTGA	NA	False	NA	11	True	ATTAAA	-16	NA	143757468	143784373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015932.9_143757469_143785244_1	chr2	+	1682	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	0	229	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757468	143785244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015937.16_56221435_56283253_1	chr13	-	1852	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	191	3	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	6096	False	NA	-8	True	AGTAAA	-15	NA	56283253	56221434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ENSMUSG00000015943.12_96104179_96104910_1	chr3	-	462	2	FSM	ENSMUSG00000015943.12	ENSMUST00000016087.4	729	2	-8	275	-8	0	multi-exon	FALSE	canonical	3	441	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACCTGGATTGGGAGA	NA	False	NA	-70	True	AAGAAA	-19	NA	96104910	96104178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96104596_96104865
ENSMUSG00000015961.9_177590742_177624067_1	chr1	-	2547	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	10	214	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	-3	True	ATTAAA	-22	NA	177624067	177590741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000015961.9_177591097_177624067_1	chr1	-	2192	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	10	569	0	-355	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGGATATTTTTCTTT	NA	False	NA	-3	True	ATTAAA	-19	NA	177624067	177591096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000015961.9_177591711_177624067_1	chr1	-	1578	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	10	1183	0	-969	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCAGCTGGCGTTGGTT	NA	False	NA	-12	True	AATAAA	-14	NA	177624067	177591710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000016257.16_174306860_174314691_1	chr2	-	1370	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	183	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314691	174306859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016257.16_174306965_174314746_1	chr2	-	1320	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	128	105	-19	-105	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTTGTGATTTCGC	NA	False	NA	-5	True	AGTAAA	-19	NA	174314746	174306964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016308.13_36138011_36146903_1	chrX	+	697	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	63	972	0	0	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36138010	36146903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016319.4_36059304_36062261_1	chrX	+	1041	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	199	0	55	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACAGATTCTCTGGGCTT	NA	False	NA	9	True	AATATA	-18	NA	36059303	36062261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ENSMUSG00000016344.15_180829140_180830299_1	chr2	+	890	4	NIC	ENSMUSG00000016344.15	novel	1160	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	629	junction_1	111.05254011803	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3436	False	NA	3	True	AATAAA	-19	NA	180829139	180830299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829140_180830299_2	chr2	+	795	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	100	265	0	2	multi-exon	FALSE	canonical	3	201	junction_1	270.955139275859	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3436	False	NA	3	True	AATAAA	-19	NA	180829139	180830299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829140_180830299_3	chr2	+	867	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	51	235	0	2	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3436	False	NA	3	True	AATAAA	-19	NA	180829139	180830299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
ENSMUSG00000016409.5_36390448_36411941_1	chrX	+	1772	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	2458	0	-2458	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTAAGTTATTTGAGGC	NA	False	NA	NA	False	AATAAA	-19	NA	36390447	36411941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
ENSMUSG00000016481.16_194780967_194813869_1	chr1	-	1297	9	NIC	ENSMUSG00000016481.16	novel	1501	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	78.6018447620665	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTATCAGGAGTGAG	NA	False	NA	53	True	NA	NA	NA	194813869	194780966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_194786104_194813869_1	chr1	-	1331	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813869	194786103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016495.13_29326105_29339247_1	chr19	-	791	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	123	106	-23	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339247	29326104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_29326105_29339247_2	chr19	-	660	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339247	29326104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016510.12_146891739_146900597_1	chr5	-	1573	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	-2	3356	0	-409	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900597	146891738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
ENSMUSG00000016510.12_146891739_146900597_2	chr5	-	1562	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	10	-438	0	-409	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900597	146891738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
ENSMUSG00000016541.11_85220558_85347266_1	chr15	+	1678	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	112	147	112	-147	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACGTTTTCTTTATTTC	NA	False	NA	27	True	AGTAAA	-17	NA	85220557	85347266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016541.11_85220558_85347413_1	chr15	+	1825	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	112	0	112	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220557	85347413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016541.11_85220558_85348038_1	chr15	+	2450	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	112	-625	112	625	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCCATGTTGTAGAGGGC	NA	False	NA	15	True	AATAAA	-16	NA	85220557	85348038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016554.10_77843198_77854722_1	chr15	-	1832	15	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	123	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_14	427.115718201396	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	3036	False	NA	-11	True	AATAAA	-24	NA	77854722	77843197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
ENSMUSG00000016554.10_77843198_77855013_1	chr15	-	1893	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	447.556175929061	1152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_77843317_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUSG00000016559.15_115913117_115915330_1	chr11	-	1663	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	330	0	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	4599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	-15	True	AATAAA	-14	NA	115915330	115913116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUSG00000016559.15_115913679_115915330_1	chr11	-	1101	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	892	0	340	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGGGAGTCTTGTCAT	NA	False	NA	-4	True	ATTAAA	-17	NA	115915330	115913678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUSG00000016559.15_115913884_115915330_1	chr11	-	896	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	1097	0	135	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTGTTTAACCATACA	NA	False	NA	NA	False	AATAAA	-17	NA	115915330	115913883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUSG00000016619.11_84807612_84824210_1	chr15	+	1812	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	2954	0	2	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTCTCCCTTCCTAAGA	NA	False	NA	25	True	AATAAA	-19	NA	84807611	84824210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUSG00000016664.17_83260323_83348784_1	chr15	-	3155	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	23	515	-13	0	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	7130	False	NA	0	True	AATAAA	-27	NA	83348784	83260322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
ENSMUSG00000016757.12_83460930_83479358_1	chr15	-	2135	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	1639	0	-1610	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTTCCTGCTCCATAT	4671	False	NA	1	True	NA	NA	NA	83479358	83460929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
ENSMUSG00000016831.13_52517022_52530928_1	chr14	+	2156	9	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	419	2930	0	1114	3prime_fragment	FALSE	canonical	3	458	junction_4	39.6389959509572	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCGGCCAAAAGCCTGTT	NA	False	NA	NA	False	NA	NA	NA	52517021	52530928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016831.13_52517022_52531969_1	chr14	+	3197	9	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	419	1889	0	-1889	3prime_fragment	FALSE	canonical	3	458	junction_4	39.6389959509572	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	8	True	AGTAAA	-20	NA	52517021	52531969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016833.15_100946609_100952337_1	chr5	+	501	6	NNC	ENSMUSG00000016833.15	novel	638	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	731.986447961982	726	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946608	100952337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_100946727_100947417_100947459_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUSG00000016833.15_100946609_100952337_2	chr5	+	522	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	116	0	0	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946608	100952337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUSG00000016946.7_24266708_24276752_1	chr17	-	1875	3	ISM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	15707	0	2539	0	3prime_fragment	FALSE	canonical	3	997	junction_1	73.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGCAACTGTGAATATC	NA	False	NA	-22	True	AATAAA	-20	NA	24276752	24266707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_24268419_24274898_24275025_24276714
ENSMUSG00000017009.4_164267394_164285106_1	chr2	-	1231	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	1227	0	426	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGGAGGGCGGGGTGAA	NA	False	NA	NA	False	TTTAAA	-10	NA	164285106	164267393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUSG00000017144.9_51021392_51039122_1	chr2	-	1885	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	1	942	0	455	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGATAGCGTGATTAAA	NA	False	NA	NA	False	AATAAA	-15	NA	51039122	51021391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
ENSMUSG00000017176.18_100320179_100331899_1	chr11	-	1499	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	-145	-6	0	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331899	100320178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ENSMUSG00000017188.4_101168794_101169777_1	chr11	-	723	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	163	0	-8	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5665	False	NA	-5	True	AATAAA	-20	NA	101169777	101168793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101169279_101169539
ENSMUSG00000017286.16_76111467_76134501_1	chr11	-	2253	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	50	-869	0	869	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCTGTGATCATGGTG	NA	False	NA	NA	False	NA	NA	NA	76134501	76111466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000017286.16_76112620_76134501_1	chr11	-	1100	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	50	284	0	0	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGCAAATTCCTACTGT	NA	False	NA	-13	True	AATGAA	-20	NA	76134501	76112619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000017299.14_164596059_164610140_1	chr2	+	904	10	ISM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	8156	387	0	-387	3prime_fragment	FALSE	canonical	3	563	junction_7	42.9653894589357	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGTAGTGAGCCTGCTA	NA	False	NA	15	True	AATAAA	-1	NA	164596058	164610140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000017421.19_80274157_80286584_2	chr11	+	1820	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-192	0	192	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTATGGCTTCTTTTTC	NA	False	NA	22	True	AATAAA	-30	NA	80274156	80286584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_1	chr11	+	2099	11	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	0	-103	intron_retention	FALSE	canonical	3	172	junction_7	258.380823591845	351	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282216_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_2	chr11	+	2204	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-576	0	-103	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_3	chr11	+	2111	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	28	106	0	-103	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80287074_1	chr11	+	2310	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-682	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274156	80287074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017428.17_80319449_80362792_1	chr11	+	1568	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	-2	1282	0	57	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	13	True	NA	NA	NA	80319448	80362792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ENSMUSG00000017428.17_80319449_80364074_1	chr11	+	1467	14	NIC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_13	281.900796684929	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	16	True	AATAAA	-20	NA	80319448	80364074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80363918
ENSMUSG00000017453.5_77771441_77784633_1	chr11	-	1709	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	289	0	289	0	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784633	77771440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017499.16_98798675_98812167_1	chr11	+	1971	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	48	2595	0	-120	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGAGTGTTAGCGCTGG	0	True	NA	10	True	AGTAAA	-15	NA	98798674	98812167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ENSMUSG00000017499.16_98798675_98812719_1	chr11	+	2523	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	48	2043	0	0	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGGGCTGCATTTG	0	True	NA	8	True	AATATA	-17	NA	98798674	98812719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ENSMUSG00000017677.12_79130214_79145498_1	chr11	-	2637	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_79130214_79145498_2	chr11	-	2330	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_79130437_79130567_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017686.18_80099910_80157638_1	chr11	+	3013	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	674	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099909	80157638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ENSMUSG00000017707.10_163466582_163487045_1	chr2	-	2287	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	6	1390	0	-1390	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTTGTTTGTGTATTT	NA	False	NA	-10	True	ATTAAA	-15	NA	163487045	163466581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000017707.10_163466690_163487045_1	chr2	-	2179	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	6	1498	0	-1498	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCAGAGTTATGTAATG	NA	False	NA	-10	True	ATTAAA	-22	NA	163487045	163466689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000017715.12_117898891_117914837_1	chr11	+	950	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4278	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.36023408371	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898890	117914837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_117898955_117905399_117905549_117910432_117910563_117914230
ENSMUSG00000017716.16_117740145_117746558_1	chr11	+	769	3	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740144	117746558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_117740288_117743488_117743607_117746050
ENSMUSG00000017721.16_164339466_164350221_1	chr2	+	2311	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5138	False	NA	7	True	AATAAA	-16	NA	164339465	164350221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349543_164349767
ENSMUSG00000017721.16_164339466_164350221_2	chr2	+	2471	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5138	False	NA	7	True	AATAAA	-16	NA	164339465	164350221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349447_164349511
ENSMUSG00000017723.12_164404634_164410430_1	chr2	+	714	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	135	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017723.12_164404634_164410430_2	chr2	+	756	6	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_4	216.583101833915	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164409269_164409312_164410254
ENSMUSG00000017723.12_164404634_164410430_3	chr2	+	570	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017754.14_164681438_164698462_1	chr2	-	1547	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	254	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	100.554910078168	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164698462	164681437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698385
ENSMUSG00000017754.14_164681438_164699561_1	chr2	-	1805	16	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_15	91.9865690679291	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699561	164681437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699437
ENSMUSG00000017760.17_164675727_164681504_1	chr2	+	1819	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	906	1448	0	-435	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	450	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_164675727_164681504_2	chr2	+	1998	14	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	934	435	0	-435	3prime_fragment	FALSE	canonical	3	937	junction_10	54.6384566651142	455	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017764.3_164664933_164668791_1	chr2	+	2378	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	327	0	0	0	multi-exon	FALSE	canonical	3	571	junction_1	0	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTCTTGTCTGGTTTA	8854	False	NA	16	True	AATAAA	-19	NA	164664932	164668791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164665121_164666601
ENSMUSG00000017778.15_86192935_86194908_1	chr13	-	425	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	115	0	-15	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	6079	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194908	86192934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_86193028_86193845_86193989_86194719
ENSMUSG00000017801.16_100978116_100982344_1	chr11	+	1286	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	-10	689	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTGCCTCTGCTTGGTC	8236	False	NA	6	True	NA	NA	NA	100978115	100982344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017801.16_100978116_100982344_2	chr11	+	1124	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	13	689	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTGCCTCTGCTTGGTC	8236	False	NA	6	True	NA	NA	NA	100978115	100982344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017837.13_100513746_100518433_1	chr11	+	1961	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513745	100518433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
ENSMUSG00000017843.15_110452293_110537347_1	chr12	+	1471	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	121	775	0	2	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTTGTATAAGTACT	5041	False	NA	15	True	AATAAA	-20	NA	110452292	110537347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUSG00000017858.13_162859411_162887823_2	chr2	+	1873	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	137	238	0	-238	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAACATGATATTGATG	NA	False	NA	18	True	AATAAA	-26	NA	162859410	162887823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162888061_1	chr2	+	2234	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859410	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162888061_2	chr2	+	1981	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859410	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162888061_3	chr2	+	2111	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	137	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859410	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162873933_162888061_1	chr2	+	1428	5	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9570	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	186.483745940497	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873932	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162873953_162887820_1	chr2	+	1322	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9590	-241	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGGAACATGATATTG	NA	False	NA	15	True	AATAAA	-23	NA	162873952	162887820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162873999_162888061_1	chr2	+	1517	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9636	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873998	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017861.12_162896607_162925594_1	chr2	+	2592	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	0	975	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	809.068256568618	357	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896606	162925594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
ENSMUSG00000017969.14_167045114_167063280_1	chr2	-	1112	6	ISM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	19244	287	-12944	-287	3prime_fragment	FALSE	canonical	3	46	junction_5	14.8404851672713	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167063280	167045113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128
ENSMUSG00000017969.14_167045114_167082509_1	chr2	-	1805	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	15	287	0	-287	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	5262	False	NA	-31	True	AATAAA	-22	NA	167082509	167045113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
ENSMUSG00000017999.17_166857230_166876867_1	chr2	+	2597	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	117	0	0	0	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166876867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ENSMUSG00000018040.10_83000049_83006952_1	chr15	-	1898	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	50	2415	0	0	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018040.10_83000049_83006952_2	chr15	-	1872	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	832	junction_4	68.5907710814729	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_83000330_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018042.19_83037695_83056403_1	chr15	-	2032	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	390	0	390	0	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83056403	83037694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
ENSMUSG00000018160.16_98048285_98084110_1	chr11	-	2517	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-8	294	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTGACCTTATTGCAG	NA	False	NA	-8	True	AATGAA	-15	NA	98084110	98048284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018171.10_86475519_86512133_1	chr11	-	1182	6	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19012	237	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	277.055517902098	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	0	True	TATAAA	-23	NA	86512133	86475518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86512073
ENSMUSG00000018171.10_86475519_86574662_1	chr11	-	1959	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	828	0	237	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	9872	False	NA	0	True	TATAAA	-23	NA	86574662	86475518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
ENSMUSG00000018189.13_143653043_143682545_1	chr1	+	1162	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	24	659	0	-134	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATTGACTCAGTGCAC	NA	False	NA	11	True	AATAAA	-18	NA	143653042	143682545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_143653043_143682679_1	chr1	+	1446	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653042	143682679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUSG00000018189.13_143653043_143682679_2	chr1	+	1296	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	24	525	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653042	143682679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_143653059_143682679_1	chr1	+	1280	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	40	525	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653058	143682679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_143653059_143682679_2	chr1	+	1430	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653058	143682679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUSG00000018196.19_143615348_143622514_1	chr1	+	659	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	53	2625	0	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615347	143622514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
ENSMUSG00000018209.16_163916058_163959952_1	chr2	+	1286	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	0	37492	0	-337	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAATCAGATCAACAGCT	NA	False	NA	NA	False	AAAAAG	-5	NA	163916057	163959952	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
ENSMUSG00000018286.7_70416212_70418684_1	chr11	+	1007	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	-209	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	4676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTGTTCTGCCTGCAT	NA	False	NA	17	True	AATAAA	-18	NA	70416211	70418684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
ENSMUSG00000018287.13_70554597_70560120_1	chr11	-	1037	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	122	0	-4	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560120	70554596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
ENSMUSG00000018326.10_163837123_163858733_1	chr2	+	995	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	243	1775	243	1530	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGACTTTCGATTTTTCA	NA	False	NA	7	True	GATAAA	-19	NA	163837122	163858733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUSG00000018326.10_163837123_163860131_1	chr2	+	2393	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	243	377	243	-377	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCCACAAAAAAAATCT	NA	False	NA	NA	False	TTTAAA	-19	NA	163837122	163860131	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUSG00000018326.10_163837123_163860508_1	chr2	+	2770	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	243	0	243	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163837122	163860508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUSG00000018411.18_104200490_104219082_2	chr11	+	861	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	15	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGATCTGGCCCCTTG	9487	False	NA	NA	False	NA	NA	NA	104200489	104219082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219275_1	chr11	+	1147	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8369	14	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	204.272954646473	171	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9487	False	NA	19	True	AATAAA	-23	NA	104200489	104219275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219275_2	chr11	+	1000	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	14	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	154	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9487	False	NA	19	True	AATAAA	-23	NA	104200489	104219275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219275_3	chr11	+	1054	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	14	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	187	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9487	False	NA	19	True	AATAAA	-23	NA	104200489	104219275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104220972_1	chr11	+	2751	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	1711	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	233	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATATTTGTCAAAAGGTT	9487	False	NA	NA	False	NA	NA	NA	104200489	104220972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200691_104219275_1	chr11	+	1096	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8168	14	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	110	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9688	False	NA	19	True	AATAAA	-23	NA	104200690	104219275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018425.19_86660575_86698437_1	chr11	-	2775	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	135	903	135	-903	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCAAGGCCTTCTTAT	8662	False	NA	-5	True	ATTAAA	-17	NA	86698437	86660574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
ENSMUSG00000018428.16_88721729_88755412_1	chr11	-	3647	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	111	0	-111	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTTGCAGTGGTGTTGA	NA	False	NA	-19	True	NA	NA	NA	88755412	88721728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ENSMUSG00000018433.15_107057489_107080178_2	chr11	-	3129	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	29	0	0	0	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1130	False	NA	NA	False	TATAAA	-12	NA	107080178	107057488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018433.15_107057753_107080178_2	chr11	-	2865	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	29	264	0	-264	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGCAAAACATCTCTG	1130	False	NA	NA	False	NA	NA	NA	107080178	107057752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018442.14_70900759_70910069_1	chr11	-	1115	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	60	2491	0	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910069	70900758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
ENSMUSG00000018446.9_70868674_70873049_1	chr11	-	764	5	ISM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	803	12	784	0	3prime_fragment	FALSE	canonical	3	4814	junction_4	248.624717194409	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAGTTGAGGTTCTTT	NA	False	NA	-38	True	AATAAA	-20	NA	70873049	70868673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995
ENSMUSG00000018449.13_70861312_70868628_1	chr11	+	796	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	273	31	0	1	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018449.13_70861312_70868628_2	chr11	+	684	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	-21	-115	0	1	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018449.13_70861312_70868628_4	chr11	+	1563	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
ENSMUSG00000018449.13_70861312_70868755_1	chr11	+	923	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	273	-96	0	96	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAAGGAATAGCGAATG	NA	False	NA	141	True	AATAAA	-19	NA	70861311	70868755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018537.17_97580646_97590470_2	chr11	-	1346	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	4	997	-3	0	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590470	97580645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
ENSMUSG00000018565.18_69859050_69871089_1	chr11	-	927	7	NIC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_3	199.363710060003	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9889	False	NA	0	True	AATAAA	-30	NA	69871089	69859049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_69859367_69859921_69860023_69860318_69860415_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_69859050_69871089_2	chr11	-	1109	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	989	0	0	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9889	False	NA	0	True	AATAAA	-30	NA	69871089	69859049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_69859050_69871349_1	chr11	-	1369	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	729	0	173	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9629	False	NA	0	True	AATAAA	-30	NA	69871349	69859049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018567.15_69882465_69885777_1	chr11	+	855	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	496	0	0	0	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	804	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	5224	False	NA	16	True	AATAAA	-26	NA	69882464	69885777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUSG00000018569.13_69856327_69858708_1	chr11	+	1227	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	105	3	105	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8848	False	NA	6	True	AATAAA	-16	NA	69856326	69858708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUSG00000018569.13_69856530_69858708_1	chr11	+	1024	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	308	3	308	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	9051	False	NA	6	True	AATAAA	-16	NA	69856529	69858708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUSG00000018572.11_69886603_69890593_2	chr11	+	1764	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	242	0	2	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTCCCCTCATGTTTCTT	2317	False	NA	8	True	TATAAA	-18	NA	69886602	69890593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
ENSMUSG00000018583.6_55360544_55390976_1	chr11	+	1982	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	33	4688	0	-4688	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTTCTTTTGACATGT	NA	False	NA	27	True	AATAAA	-14	NA	55360543	55390976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ENSMUSG00000018583.6_55360544_55391340_1	chr11	+	2346	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	33	4324	0	-4324	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	41	True	AATAAA	-28	NA	55360543	55391340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ENSMUSG00000018583.6_55360544_55391709_1	chr11	+	2715	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	33	3955	0	-3955	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	17	True	ATTAAA	-18	NA	55360543	55391709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ENSMUSG00000018593.14_55286247_55310726_1	chr11	-	1199	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	180	921	0	0	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3856	False	NA	NA	False	AATACA	-28	NA	55310726	55286246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ENSMUSG00000018651.15_83969491_84020426_1	chr11	-	2406	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	-255	0	255	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGCCGCTTTCTGTGAG	NA	False	NA	-20	True	AATAAA	-19	NA	84020426	83969490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ENSMUSG00000018666.14_96679985_96698975_1	chr11	+	2179	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	491	0	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
ENSMUSG00000018666.14_96679985_96698975_2	chr11	+	1317	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	289.614916742905	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441_96697591_96698628
ENSMUSG00000018666.14_96679985_96698975_3	chr11	+	992	5	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
ENSMUSG00000018666.14_96679985_96698975_4	chr11	+	1141	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
ENSMUSG00000018669.15_96798642_96807240_1	chr11	-	1778	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	82	390	0	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807240	96798641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000018669.15_96798642_96807240_2	chr11	-	1965	13	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	82	390	0	0	intron_retention	FALSE	canonical	3	982	junction_6	81.183776430735	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807240	96798641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
ENSMUSG00000018669.15_96798642_96807240_3	chr11	-	2324	12	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	831	junction_11	110.238659205703	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807240	96798641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000018669.15_96798642_96807339_1	chr11	-	1877	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	-17	390	-17	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807339	96798641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000018677.10_102293971_102298141_1	chr11	-	1448	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_11	1348.24224715916	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7917	False	NA	95	True	NA	NA	NA	102298141	102293970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298063
ENSMUSG00000018677.10_102293971_102298313_1	chr11	-	1468	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	57	160	0	0	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7745	False	NA	95	True	NA	NA	NA	102298313	102293970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018677.10_102293971_102298772_1	chr11	-	1539	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_11	1345.10671179491	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7286	False	NA	95	True	NA	NA	NA	102298772	102293970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
ENSMUSG00000018677.10_102294075_102298313_1	chr11	-	1364	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	57	264	0	-104	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTGTATCCCCATGTT	7745	False	NA	-9	True	NA	NA	NA	102298313	102294074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018678.14_96844299_96847008_1	chr11	-	1370	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107623.8	2907	7	12483	0	12483	0	3prime_fragment	FALSE	canonical	3	445	junction_2	23.5	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGTTGTAACTGCTTG	NA	False	NA	-11	True	ATTAAA	-16	NA	96847008	96844298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_96845397_96846600_96846795_96846930
ENSMUSG00000018678.14_96851563_96868537_1	chr11	-	1444	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	7396	0	-6518	5prime_fragment	FALSE	canonical	3	58	junction_2	224.5	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	-11	True	AATAAA	-21	NA	96868537	96851562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_96852836_96854190_96854271_96868446
ENSMUSG00000018727.20_113588998_113600466_1	chr11	-	1489	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	-114	0	-114	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUSG00000018727.20_113588998_113600466_2	chr11	-	1264	8	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-114	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	79.6077116559824	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_113588998_113600466_3	chr11	-	1333	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	-120	0	-114	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018736.15_68712260_68743961_1	chr11	-	2417	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUSG00000018761.15_69547523_69553413_1	chr11	-	1301	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	0	-330	0	0	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	-4	True	AATAAA	-33	NA	69553413	69547522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_69547523_69553413_2	chr11	-	1180	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	-69	-465	0	0	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	-4	True	AATAAA	-33	NA	69553413	69547522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018774.14_69555039_69557019_1	chr11	-	836	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	-131	-93	-40	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3210	False	NA	-1	True	AATAAA	-19	NA	69557019	69555038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
ENSMUSG00000018821.4_42111842_42117440_1	chr19	-	856	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	58	130	-12	-130	multi-exon	FALSE	canonical	3	851	junction_1	12	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTCACCATCTCT	NA	False	NA	0	True	AATAAA	-18	NA	42117440	42111841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_42112288_42113186_42113466_42117309
ENSMUSG00000018841.18_82768622_82781441_1	chr11	-	2330	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	-1	1097	-1	941	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGTTGTTTATGGACCA	NA	False	NA	78	True	AATAAA	-17	NA	82781441	82768621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018841.18_82769458_82781441_1	chr11	-	1494	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	-1	1933	-1	105	multi-exon	FALSE	canonical	3	107	junction_4	12.9099444873581	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATAGTGTCCTGGTCCTG	NA	False	NA	-2	True	AAGAAA	-17	NA	82781441	82769457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018858.16_115294583_115301745_1	chr11	+	776	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	3	1743	0	0	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018858.16_115294583_115301745_2	chr11	+	836	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	5	1755	0	0	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018882.13_97206542_97219937_1	chr11	+	1622	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	809	0	-809	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	97206541	97219937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ENSMUSG00000018882.13_97206734_97219937_1	chr11	+	1430	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	192	809	0	-809	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	97206733	97219937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ENSMUSG00000018882.13_97206734_97219937_2	chr11	+	1604	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	0	-809	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_5	1010.03465287088	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	97206733	97219937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217433_97217758_97218911_97219086_97219307
ENSMUSG00000018923.14_70342758_70344390_1	chr11	+	726	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	13	163	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACTTGGGAAGTAGAGG	NA	False	NA	33	True	AATAAA	-43	NA	70342757	70344390	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUSG00000018965.12_33176222_33185310_1	chr5	+	1702	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	62	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_1	0	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCCTGGCCTTGATTT	NA	False	NA	9	True	AATAAA	-20	NA	33176221	33185310	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_33176499_33183885
ENSMUSG00000018974.8_113880507_113909710_1	chr5	-	3586	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	861	0	-11	0	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113909710	113880506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ENSMUSG00000018995.13_96600769_96712699_1	chr7	+	2455	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	57	1266	0	520	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGAAAGAAGTTATTTT	7399	False	NA	6	True	ATTAAA	-18	NA	96600768	96712699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
ENSMUSG00000018999.15_34132810_34153929_1	chr6	-	3641	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	117	2495	-24	848	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTGTTTG	NA	False	NA	-24	True	TATAAA	-19	NA	34153929	34132809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
ENSMUSG00000018999.15_34135020_34153929_1	chr6	-	1431	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	117	4705	-24	0	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTCCAAGTCTCAGAGC	NA	False	NA	22	True	NA	NA	NA	34153929	34135019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
ENSMUSG00000019055.16_147994518_148021224_1	chr4	-	2935	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	0	308	0	-308	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATGAGAGATGCCTGGG	NA	False	NA	-4	True	ATTAAA	-15	NA	148021224	147994517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
ENSMUSG00000019080.9_76585665_76587774_1	chr15	+	1581	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	665	0	84	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9243	False	NA	16	True	CATAAA	-19	NA	76585664	76587774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019087.14_73340749_73348296_1	chrX	+	2322	9	ISM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	-20	-1	0	1	intron_retention	FALSE	canonical	3	647	junction_4	28.1954672775608	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340748	73348296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963
ENSMUSG00000019087.14_73340749_73348296_2	chrX	+	2664	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	665	junction_4	23.6748812035034	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340748	73348296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019087.14_73340749_73348296_3	chrX	+	2037	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	223.785018209441	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340748	73348296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73340928_73341228_73341356_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019087.14_73340749_73348296_4	chrX	+	2106	10	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	212.313069560432	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340748	73348296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344965_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019143.16_36916322_36924926_1	chr18	+	2386	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	261	689	0	179	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCTGAGTTCATTTCC	NA	False	NA	13	True	NA	NA	NA	36916321	36924926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019173.12_100606092_100629041_1	chr11	-	1658	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	257	0	-255	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTGTCTTCCTCGTCCTT	NA	False	NA	-1	True	AATATA	-23	NA	100629041	100606091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUSG00000019173.12_100606665_100629041_1	chr11	-	1085	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	830	0	-828	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTTTTTTAATATATAT	NA	False	NA	-3	True	NA	NA	NA	100629041	100606664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUSG00000019179.11_135807516_135819245_1	chr5	+	1274	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	182	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	1949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	635	False	NA	38	True	AGTAAA	-25	NA	135807515	135819245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ENSMUSG00000019188.17_152511408_152546972_1	chr2	+	1559	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	27	3618	0	16	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152511407	152546972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUSG00000019214.15_25938021_25946393_1	chr17	-	3093	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	121	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGGGTCAGGCTCATAG	5674	False	NA	-18	True	TATAAA	-17	NA	25946393	25938020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUSG00000019235.10_85182533_85187241_1	chr12	-	1709	6	ISM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	10797	510	-478	-119	3prime_fragment	FALSE	canonical	3	114	junction_5	16.4073154415949	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGTGTTTAAGAGCGG	613	False	NA	-12	True	AATAAA	-17	NA	85187241	85182532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019235.10_85182533_85187241_2	chr12	-	1675	7	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-478	-119	at_least_one_novel_splicesite	TRUE	non_canonical	3	76	junction_1	28.7981480886069	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGTGTTTAAGAGCGG	613	False	NA	-12	True	AATAAA	-17	NA	85187241	85182532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_85183083_85183116_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019297.10_55983897_55991521_1	chr14	+	1651	9	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	747	1436	747	-1436	3prime_fragment	FALSE	canonical	3	659	junction_1	23.4464149711635	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTATTTTATTTTTTA	NA	False	NA	27	True	NA	NA	NA	55983896	55991521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
ENSMUSG00000019303.15_100982983_100986236_1	chr11	-	931	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	26	334	-10	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019303.15_100982983_100986236_2	chr11	-	953	8	NIC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	137.651141421689	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984641_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019362.9_84972867_84976348_1	chr8	-	595	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	854.068433375739	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_84972950_84972970_84973323_84976102_84976159_84976244
ENSMUSG00000019362.9_84972867_84976348_2	chr8	-	702	2	ISM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	intron_retention	FALSE	canonical	3	1856	junction_1	0	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_84973323_84976102
ENSMUSG00000019370.11_16649304_16657894_1	chr7	-	2145	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	145	0	-140	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16657894	16649303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019370.11_16650732_16657894_1	chr7	-	717	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	145	1428	-140	337	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCATGACTGCTCTCTCT	NA	False	NA	-8	True	GATAAA	-22	NA	16657894	16650731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019428.17_70980397_70987978_1	chr8	+	1949	8	ISM	ENSMUSG00000019428.17	ENSMUST00000119353.9	1720	9	23	0	0	0	intron_retention	FALSE	canonical	0	0	junction_1	536.662817411302	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980396	70987978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132
ENSMUSG00000019428.17_70980659_70987978_1	chr8	+	1637	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	163	-1	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980658	70987978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_70980659_70987978_2	chr8	+	1889	8	ISM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	163	-1	0	0	intron_retention	FALSE	canonical	3	550	junction_1	284.398039546617	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980658	70987978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
ENSMUSG00000019437.18_78068956_78071307_1	chr11	+	992	5	NIC	ENSMUSG00000019437.18	novel	457	4	NA	NA	0	1	intron_retention	FALSE	canonical	3	12	junction_1	80.151419201409	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTGAAGTCCTGTTCT	NA	False	NA	NA	False	AATGAA	-2	NA	78068955	78071307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365_78070449_78070772
ENSMUSG00000019461.13_69737443_69741862_1	chr11	+	1763	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	1022	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737442	69741862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019471.11_21050727_21061238_1	chr9	-	1749	8	NIC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	0	1522	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	586.784875227641	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061238	21050726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
ENSMUSG00000019471.11_21050727_21061238_2	chr9	-	1602	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	40	6209	0	1522	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	1229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061238	21050726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
ENSMUSG00000019494.15_138159362_138162243_1	chr5	+	1093	10	FSM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	29	665	0	3	multi-exon	FALSE	canonical	3	3954	junction_1	284.410501446999	2810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCCTTCCAGTGGCTTT	NA	False	NA	14	True	AATAAA	-15	NA	138159361	138162243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUSG00000019505.8_62442330_62444039_1	chr11	+	1166	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	0	-172	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	12962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442329	62444039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62442422_62442965
ENSMUSG00000019518.12_138170330_138176952_1	chr5	+	1674	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	66	1739	0	3	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCCTTCCTCCCTCACA	8143	False	NA	22	True	AAAAAG	-21	NA	138170329	138176952	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ENSMUSG00000019539.12_44732337_44741576_1	chr7	-	1393	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	69	0	-29	0	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6729	False	NA	-4	True	AATAAA	-25	NA	44741576	44732336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
ENSMUSG00000019539.12_44732337_44741638_1	chr7	-	1391	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6667	False	NA	-4	True	AATAAA	-25	NA	44741638	44732336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
ENSMUSG00000019578.12_56375250_56382017_1	chr17	-	1733	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	11	1205	0	0	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCCCAGTGTTTCATCA	6317	False	NA	-2	True	AATAAA	-17	NA	56382017	56375249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ENSMUSG00000019578.12_56375536_56382017_1	chr17	-	1447	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	11	1491	0	0	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGCTCCAGTCTCATG	6317	False	NA	-17	True	AATAAA	-15	NA	56382017	56375535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ENSMUSG00000019579.14_56483547_56490920_1	chr17	-	907	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	803	0	-803	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAGATGGATTCTCATC	NA	False	NA	-6	True	AATAAA	-43	NA	56490920	56483546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUSG00000019710.14_87826843_87830741_1	chr3	+	930	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	0	-228	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	364.828460451697	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_87826959_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_2	chr3	+	984	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	0	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_3	chr3	+	1081	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	30	228	0	-228	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_4	chr3	+	958	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	30	238	0	-228	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_5	chr3	+	904	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	-27	238	0	-228	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87827007_87830741_1	chr3	+	794	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	194	238	137	-228	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87827006	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87827007_87830741_2	chr3	+	917	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	194	228	137	-228	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87827006	87830741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019715.15_29825440_29848941_1	chr2	+	2586	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	2	1442	0	712	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTACTGTTTGCAG	NA	False	NA	7	True	AATAAA	-20	NA	29825439	29848941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019715.15_29825440_29849430_1	chr2	+	3075	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	2	953	0	-953	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTCCTGATATGTGGT	NA	False	NA	6	True	AATAAA	-16	NA	29825439	29849430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019738.16_29931373_29932812_1	chr7	+	793	7	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	152	junction_1	393.380823404271	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931372	29932812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_29931625_29931647_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019738.16_29931457_29932812_1	chr7	+	709	7	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	152	junction_1	393.380823404271	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931456	29932812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_29931625_29931647_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019738.16_29931757_29932812_1	chr7	+	432	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	384	3	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931756	29932812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019763.12_4353171_4382334_1	chr10	-	1829	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	54	1256	0	0	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5716	False	NA	-5	True	NA	NA	NA	4382334	4353170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ENSMUSG00000019763.12_4375326_4382334_1	chr10	-	2530	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	10	-768	0	768	multi-exon	FALSE	canonical	3	145	junction_2	8	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTTCCAATGTCTGTT	5716	False	NA	NA	False	AATAGA	-16	NA	4382334	4375325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_4377692_4379076_4379172_4382265
ENSMUSG00000019773.8_5749160_5755427_1	chr10	-	1767	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	173	0	173	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755427	5749159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUSG00000019773.8_5749527_5755427_1	chr10	-	1400	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	173	367	173	-367	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAACTTTAATTTAAGAA	NA	False	NA	NA	False	AAAAAG	-11	NA	5755427	5749526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUSG00000019782.11_33872551_33895582_1	chr10	-	1052	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	38	0	0	0	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTTACTTCCTCTTA	NA	False	NA	-23	True	AATAAA	-23	NA	33895582	33872550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
ENSMUSG00000019791.13_30484379_30494475_1	chr10	-	633	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	242	0	0	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30494475	30484378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
ENSMUSG00000019792.9_30410711_30476673_1	chr10	-	1797	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	72	490	0	0	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476673	30410710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
ENSMUSG00000019795.18_7505145_7539025_1	chr10	-	2402	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	347	8	0	0	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539025	7505144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7505958_7539067_1	chr10	-	1678	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	813	0	-813	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCATTGGTGGCCTTTGA	NA	False	NA	-1	True	AATAAA	-14	NA	7539067	7505957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7505958_7539067_2	chr10	-	1631	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	305	821	0	-813	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCATTGGTGGCCTTTGA	NA	False	NA	-1	True	AATAAA	-14	NA	7539067	7505957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7506449_7539067_1	chr10	-	1140	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	305	1312	0	-1304	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTTTGAAGAGTGGCTT	NA	False	NA	-9	True	ATTAAA	-26	NA	7539067	7506448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7506449_7539067_2	chr10	-	1187	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	1304	0	-1304	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTTTGAAGAGTGGCTT	NA	False	NA	-9	True	ATTAAA	-26	NA	7539067	7506448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019802.14_42674750_42705278_1	chr10	+	1900	14	ISM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	37258	3232	-19174	-1	3prime_fragment	FALSE	canonical	3	208	junction_8	25.1125278149062	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGTGGGCTGTGCAT	NA	False	NA	22	True	AATAAA	-22	NA	42674749	42705278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
ENSMUSG00000019804.13_42378286_42411366_1	chr10	+	1142	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	259	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378285	42411366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUSG00000019806.14_13522798_13744566_1	chr10	-	1396	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	158	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744566	13522797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019808.9_13428997_13438763_1	chr10	+	750	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	359	357	359	-357	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	647	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGGCAATGTAAACAAC	NA	False	NA	17	True	TTTAAA	-3	NA	13428996	13438763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUSG00000019809.17_13400517_13428864_1	chr10	-	1453	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	19	657	0	-631	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTCATTTCATAATGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	13428864	13400516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019810.16_13376828_13391290_2	chr10	+	1927	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	83	-3	0	3	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTCATATTCATTT	NA	False	NA	41	True	AATGAA	-27	NA	13376827	13391290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
ENSMUSG00000019813.17_41594837_41685626_1	chr10	-	2118	10	ISM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	238	0	0	0	3prime_fragment	FALSE	canonical	3	43	junction_4	55.5797724996344	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	367	False	NA	4	True	AATAAA	-25	NA	41685626	41594836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUSG00000019814.6_13054381_13068912_1	chr10	-	1800	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	0	497	0	-497	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTGGATAAACTAAAGGA	NA	False	NA	-59	True	AATAAA	-20	NA	13068912	13054380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
ENSMUSG00000019818.16_41395410_41405328_1	chr10	+	1206	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	1716	0	286	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCCTAGAGTAAATTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	41395409	41405328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUSG00000019818.16_41395497_41405044_1	chr10	+	835	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	87	2000	0	2	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTGGCTGTCGTCTTT	NA	False	NA	6	True	TTTAAA	-15	NA	41395496	41405044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUSG00000019826.12_41326379_41328179_1	chr10	+	1243	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	-52	1285	0	-1285	multi-exon	FALSE	canonical	3	104	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCGTTGTCACCTCACA	NA	False	NA	10	True	AATAAA	-19	NA	41326378	41328179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41326527_41327084
ENSMUSG00000019837.9_40125196_40133672_1	chr10	-	1034	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-5	1497	0	150	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGCAGCGAACACTTTA	8581	False	NA	-10	True	NA	NA	NA	40133672	40125195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019837.9_40125520_40133672_1	chr10	-	710	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-5	1821	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	8581	False	NA	-16	True	AAAACA	-21	NA	40133672	40125519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019837.9_40125520_40134104_1	chr10	-	1142	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-437	1821	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	8149	False	NA	-16	True	AAAACA	-21	NA	40134104	40125519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019842.7_39489239_39530821_1	chr10	+	2076	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	309	482	309	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTTATCTCAGTGG	NA	False	NA	5	True	AATAAA	-18	NA	39489238	39530821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019845.9_39010019_39025724_1	chr10	+	1599	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	1330	0	2	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTTTCTATTTTATTA	NA	False	NA	9	True	NA	NA	NA	39010018	39025724	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019845.9_39010019_39026198_1	chr10	+	2073	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	856	0	105	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAAACGGCTGCTACGG	NA	False	NA	16	True	AATAAA	-16	NA	39010018	39026198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019849.12_44943299_45035091_1	chr10	+	2730	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	0	8203	0	-8203	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTTTAGTTTTGGTTC	NA	False	NA	31	True	AATAAA	-16	NA	44943298	45035091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
ENSMUSG00000019849.12_45026589_45035091_1	chr10	+	1091	4	ISM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	83290	8203	83290	-8203	3prime_fragment	FALSE	canonical	3	820	junction_3	27.1456974286698	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTTTAGTTTTGGTTC	NA	False	NA	31	True	AATAAA	-16	NA	45026588	45035091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_45026627_45029150_45029283_45031611_45031769_45034327
ENSMUSG00000019857.8_53473201_53484155_1	chr10	+	882	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	153	1166	-150	77	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTCTCTAATGTGTTA	1674	False	NA	6	True	TATAAA	-19	NA	53473200	53484155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
ENSMUSG00000019868.17_14531099_14581244_1	chr10	-	1227	7	FSM	ENSMUSG00000019868.17	ENSMUST00000149485.2	753	7	-41	-433	0	0	multi-exon	FALSE	canonical	3	56	junction_1	226.315168637799	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGATTACCAGAATAG	NA	False	NA	-32	True	ATTAAA	-6	NA	14581244	14531098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000019868.17_14531099_14581244_2	chr10	-	1314	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	60	600	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGATTACCAGAATAG	NA	False	NA	-32	True	ATTAAA	-6	NA	14581244	14531098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000019877.11_57392576_57408573_1	chr10	-	2121	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	53	706	0	-706	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTGCTCTTTGTGAACA	NA	False	NA	NA	False	AAGAAA	-34	NA	57408573	57392575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUSG00000019883.12_29189496_29221947_1	chr10	+	2338	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	1518	0	391	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACGACCTATGGATCTT	NA	False	NA	12	True	AATAAA	-28	NA	29189495	29221947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019897.9_105677365_105683287_1	chr10	+	969	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	407	0	-407	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGCTCACAGTGAGATA	NA	False	NA	10	True	AATATA	-16	NA	105677364	105683287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019897.9_105677365_105683694_1	chr10	+	1376	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	0	0	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105677364	105683694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019916.15_59159190_59207783_1	chr10	+	2628	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	290	0	5	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGTGTGGTATTTTCA	NA	False	NA	23	True	TTTAAA	-3	NA	59159189	59207783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUSG00000019920.19_58159392_58257631_1	chr10	+	1341	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	104	2882	104	26	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAAGGGTAGTTTTAAT	NA	False	NA	NA	False	ATTAAA	-38	NA	58159391	58257631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ENSMUSG00000019943.11_98750517_98830617_1	chr10	+	1439	8	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	249	188	combination_of_known_junctions	FALSE	canonical	3	223	junction_6	12.7022414862697	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGTGTTACAGGGGAAACT	NA	False	NA	NA	False	AAAAAG	-7	NA	98750516	98830617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507
ENSMUSG00000019947.11_67937758_67972456_1	chr10	-	776	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	0	5474	0	-5474	5prime_fragment	TRUE	canonical	3	87	junction_5	23.2292918531754	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACCCCCAAACCCCA	NA	False	NA	NA	False	AAGAAA	-7	NA	67972456	67937757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
ENSMUSG00000019948.5_89547833_89568144_1	chr10	-	1574	10	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_9	88.0716599363871	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568144	89547832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89568035
ENSMUSG00000019988.8_92521889_92558234_1	chr10	-	2205	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	48	1281	-9	-1281	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCTAGTGGGGAAGTCA	NA	False	NA	-19	True	ATTAAA	-18	NA	92558234	92521888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
ENSMUSG00000019998.7_24025225_24064182_1	chr10	+	1497	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	1938	0	-677	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATGTGTATGTATATA	NA	False	NA	14	True	AATAAA	-15	NA	24025224	24064182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000019998.7_24025225_24064859_1	chr10	+	2174	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	1261	0	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTCCCAAGAACTCT	NA	False	NA	23	True	AATAAA	-25	NA	24025224	24064859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000020018.7_93419255_93425568_1	chr10	-	497	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	364	0	-364	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	1937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACTTGTGGACTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	93425568	93419254	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ENSMUSG00000020027.19_95223652_95252719_1	chr10	-	1441	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	0	-123	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAACTAAAATTGGAT	NA	False	NA	NA	False	NA	NA	NA	95252719	95223651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
ENSMUSG00000020027.19_95247880_95251346_1	chr10	-	1625	3	FSM	ENSMUSG00000020027.19	ENSMUST00000172070.8	2153	3	0	528	0	402	multi-exon	FALSE	canonical	3	27	junction_2	233.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAACGAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	95251346	95247879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95251175
ENSMUSG00000020027.19_95247880_95252719_1	chr10	-	1694	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	528	0	402	multi-exon	FALSE	canonical	3	447	junction_2	23.5	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAACGAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	95252719	95247879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUSG00000020069.17_62851207_62859673_1	chr10	-	1404	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	764	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_2	chr10	-	1265	9	NIC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	177	junction_7	135.128411150283	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_3	chr10	-	1310	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	323	0	0	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_4	chr10	-	1449	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	764	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020074.8_62589052_62628061_1	chr10	-	2546	18	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	4	8811	4	0	5prime_fragment	FALSE	canonical	0	0	junction_4	91.878925898279	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	NA	False	NA	-99	True	AAAAAG	-39	NA	62628061	62589051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUSG00000020075.9_62417892_62438060_1	chr10	-	2860	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	0	1862	0	-1862	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTGTGTCGATCTTGT	NA	False	NA	-2	True	AGTAAA	-21	NA	62438060	62417891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
ENSMUSG00000020076.8_62451794_62486999_1	chr10	-	2647	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8104	False	NA	-11	True	ATTAAA	-28	NA	62486999	62451793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
ENSMUSG00000020078.17_62291051_62322527_1	chr10	-	2469	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5255	False	NA	-6	True	AATAAA	-17	NA	62322527	62291050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
ENSMUSG00000020078.17_62291751_62322527_1	chr10	-	1845	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	57	695	-2	-695	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATTTTTTAATTTAAG	5255	False	NA	-17	True	CATAAA	-15	NA	62322527	62291750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUSG00000020078.17_62292350_62322527_2	chr10	-	1246	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	57	1294	-2	-1294	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTCTTGGAAACACTGG	5255	False	NA	-20	True	ATTAAA	-27	NA	62322527	62292349	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUSG00000020079.16_62265119_62285468_1	chr10	-	2424	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	49	131	-6	0	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTACTATCTGGTTTG	NA	False	NA	16	True	TTTAAA	-45	NA	62285468	62265118	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ENSMUSG00000020083.14_61943989_61946792_1	chr10	-	1177	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	37	555	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946792	61943988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
ENSMUSG00000020086.7_61574444_61619699_1	chr10	-	1948	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	227	0	227	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619699	61574443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
ENSMUSG00000020088.11_61516109_61527226_1	chr10	+	743	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	20	1850	0	4	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGCTTCCTCATGGAC	NA	False	NA	30	True	AATAAA	-26	NA	61516108	61527226	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020089.9_61484400_61509947_1	chr10	+	1225	10	NIC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1272.09166724594	2711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2121	False	NA	15	True	AATAAA	-16	NA	61484399	61509947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61508169_61508213_61509597
ENSMUSG00000020107.11_59823730_59838935_1	chr10	-	1331	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	22	499	-2	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838935	59823729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020107.11_59824226_59838935_1	chr10	-	885	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	-2	496	-2	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGGGGATCAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	59838935	59824225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ENSMUSG00000020107.11_59824226_59838935_2	chr10	-	835	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	22	995	-2	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGGGGATCAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	59838935	59824225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020109.14_59715448_59733838_1	chr10	+	1685	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	70	1286	0	2	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGGATTCAATTAAGAT	NA	False	NA	22	True	TTTAAA	-5	NA	59715447	59733838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
ENSMUSG00000020116.8_17153446_17161568_1	chr11	-	1296	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	248	0	-248	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGATGTTAAAATATTT	NA	False	NA	-21	True	AATAAA	-18	NA	17161568	17153445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
ENSMUSG00000020124.11_122949133_123032831_1	chr10	-	3147	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	27	1492	0	0	multi-exon	TRUE	canonical	3	255	junction_15	80.7788802843912	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTCTTTAATTTTT	NA	False	NA	2	True	AATAAA	-32	NA	123032831	122949132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUSG00000020130.10_115034363_115087372_1	chr10	-	3166	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	586	0	-586	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	-1	True	ATTAAA	-15	NA	115087372	115034362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020130.10_115034766_115087372_1	chr10	-	2763	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	989	0	535	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCTGATTCAACAAAATT	NA	False	NA	NA	False	AATAAA	-19	NA	115087372	115034765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020130.10_115035301_115087372_1	chr10	-	2228	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	1524	0	0	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTTTTGTAGTTACTT	NA	False	NA	-2	True	ATTAAA	-21	NA	115087372	115035300	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020133.9_80154542_80156371_1	chr10	-	1195	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	454	0	-454	multi-exon	FALSE	canonical	3	349	junction_1	0	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTCTCCCTTAAGCCA	8717	False	NA	-16	True	ATTAAA	-18	NA	80156371	80154541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80155382_80156016
ENSMUSG00000020142.13_20253413_20282713_1	chr11	-	2693	8	FSM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	0	1233	0	-1208	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGCCCCAGGCCCC	7761	False	NA	-36	True	AATAAA	-14	NA	20282713	20253412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
ENSMUSG00000020149.18_20151439_20175464_1	chr11	+	1428	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	7	1392	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	False	NA	16	True	AATAAA	-29	NA	20151438	20175464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUSG00000020149.18_20151602_20175464_1	chr11	+	1265	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	1392	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	False	NA	16	True	AATAAA	-29	NA	20151601	20175464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUSG00000020152.8_20012581_20062887_1	chr11	-	3328	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	26	277	-20	-277	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTTTTTAAAAGATCTG	1362	False	NA	-15	True	AATAAA	-15	NA	20062887	20012580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUSG00000020152.8_20014670_20062887_1	chr11	-	1239	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	26	2366	-20	-2366	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGCCTCTAATGCTTTTT	1362	False	NA	-3	True	GATAAA	-19	NA	20062887	20014669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUSG00000020153.15_80085286_80092627_1	chr10	+	675	7	NIC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	164	junction_2	752.472295540212	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80085326_80088230_80088268_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020166.16_116321071_116417406_1	chr10	-	2731	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	10	-621	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417406	116321070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
ENSMUSG00000020166.16_116321692_116417406_2	chr10	-	2180	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	-1	621	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417406	116321691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000020180.11_75353848_75371297_1	chr10	+	655	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	463	1918	0	45	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	1988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGAGGCTTTTTTG	1865	False	NA	30	True	AATAAA	-17	NA	75353847	75371297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
ENSMUSG00000020186.8_110756054_110775375_1	chr10	+	872	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	404	108	0	0	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTTCAGAGGAGCTG	NA	False	NA	31	True	AATAAA	-32	NA	110756053	110775375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_110756054_110775483_1	chr10	+	980	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	404	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGACAATCAATTCCTT	NA	False	NA	139	True	ATTAAA	-21	NA	110756053	110775483	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020211.16_80634566_80640758_2	chr10	+	1625	9	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_1	429.244230450451	281	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4886	False	NA	29	True	ATTAAA	-17	NA	80634565	80640758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_80634586_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
ENSMUSG00000020211.16_80634566_80640758_3	chr10	+	1698	9	FSM	ENSMUSG00000020211.16	ENSMUST00000151928.8	781	9	0	-917	0	0	multi-exon	FALSE	canonical	3	55	junction_7	448.68263770175	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4886	False	NA	29	True	ATTAAA	-17	NA	80634565	80640758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639634_80639723_80639805
ENSMUSG00000020219.8_80735500_80736626_1	chr10	-	832	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	177	216	-7	-216	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	1807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTGCCCAGCACTT	5625	False	NA	-1	True	NA	NA	NA	80736626	80735499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUSG00000020219.8_80735738_80736626_1	chr10	-	667	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	-10	-222	-7	0	multi-exon	FALSE	canonical	3	3722	junction_1	0	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5625	False	NA	-7	True	AATAAA	-25	NA	80736626	80735737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80736094_80736315
ENSMUSG00000020219.8_80735738_80736626_2	chr10	-	594	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	177	454	-7	0	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	1684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5625	False	NA	-7	True	AATAAA	-25	NA	80736626	80735737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUSG00000020224.16_120062975_120067567_1	chr10	+	1170	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	-116	409	0	98	multi-exon	FALSE	canonical	3	35	junction_1	477.5	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTATGCTGAAGTTGT	NA	False	NA	7	True	AATAAA	-19	NA	120062974	120067567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_120063455_120063878_120064109_120067107
ENSMUSG00000020224.16_120062975_120067567_2	chr10	+	744	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	920	0	98	multi-exon	FALSE	canonical	3	990	junction_2	137	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTATGCTGAAGTTGT	NA	False	NA	7	True	AATAAA	-19	NA	120062974	120067567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_120063029_120063878_120064109_120067107
ENSMUSG00000020224.16_120062975_120067976_1	chr10	+	1153	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	511	0	0	multi-exon	FALSE	canonical	3	990	junction_2	137	2064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120062974	120067976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_120063029_120063878_120064109_120067107
ENSMUSG00000020232.18_81181885_81186151_1	chr10	-	1514	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	107	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186151	81181884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ENSMUSG00000020235.17_81202713_81214214_1	chr10	-	2264	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	136	657	0	219	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGGGTCGGTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	81214214	81202712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
ENSMUSG00000020246.14_82535045_82575312_1	chr10	+	2283	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	204	2950	0	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82535044	82575312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ENSMUSG00000020248.19_82585838_82599978_1	chr10	-	1251	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	1303	0	470	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAATGAAAGTTGCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	82599978	82585837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_82586015_82599978_1	chr10	-	1074	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	1480	0	293	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGAGTTTGTTGCTCTGTA	NA	False	NA	-6	True	ATTAAA	-17	NA	82599978	82586014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020255.9_83196085_83202394_1	chr10	+	1204	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	121975	0	-121975	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGCCTCCAGTTCTAGT	NA	False	NA	5	True	NA	NA	NA	83196084	83202394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ENSMUSG00000020265.17_77442059_77453256_1	chr10	+	1701	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	16	-712	0	0	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442058	77453256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
ENSMUSG00000020265.17_77442059_77453256_2	chr10	+	1593	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	128	909	0	0	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442058	77453256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUSG00000020268.15_54731628_54751414_1	chr11	-	664	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	324	2443	0	290	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAGTTGGTAAAAAATT	NA	False	NA	NA	False	ATTAAA	-21	NA	54751414	54731627	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ENSMUSG00000020277.11_77823740_77845580_1	chr10	-	2710	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	61	959	-10	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	-30	True	AATAAA	-15	NA	77845580	77823739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
ENSMUSG00000020283.6_23598822_23615883_1	chr11	-	1727	4	FSM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	76	2343	-31	634	multi-exon	FALSE	canonical	3	429	junction_1	13.1993265821489	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCCAGTGTTGAATTT	NA	False	NA	-3	True	AATAAA	-29	NA	23615883	23598821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_23599591_23600929_23601056_23605435_23606131_23615746
ENSMUSG00000020287.16_32176505_32182024_1	chr11	+	1067	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	-6	676	0	2	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32176504	32182024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
ENSMUSG00000020288.14_23439736_23447946_1	chr11	-	1750	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	84	1189	-16	-153	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGTGTGCTTTATTTC	NA	False	NA	-4	True	AATAAA	-20	NA	23447946	23439735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020289.16_32182669_32217658_1	chr11	-	2110	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	49	706	0	266	multi-exon	TRUE	canonical	3	148	junction_6	11.6770786871831	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGTGTGTATGTGTG	4616	False	NA	-3	True	AATATA	-15	NA	32217658	32182668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
ENSMUSG00000020290.15_23206041_23246233_1	chr11	+	4025	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	-37	2016	0	0	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGTGTTTTTTGTAT	NA	False	NA	12	True	ATTAAA	-21	NA	23206040	23246233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
ENSMUSG00000020303.3_31310045_31320074_1	chr11	-	1202	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	2738	0	-2059	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTGTGCAAATTGTGG	NA	False	NA	-19	True	ATTAAA	-20	NA	31320074	31310044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ENSMUSG00000020305.14_30904448_31051471_1	chr11	+	1942	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	53	1233	0	138	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGCTGGATGTGACTT	NA	False	NA	13	True	AATAAA	-13	NA	30904447	31051471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUSG00000020307.16_79518029_79524232_1	chr10	+	1100	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	225	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518028	79524232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_79518069_79518234_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUSG00000020307.16_79521182_79524232_1	chr10	+	570	2	ISM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	3044	-4	345	0	3prime_fragment	FALSE	canonical	3	1645	junction_1	0	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79521181	79524232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_79521202_79523682
ENSMUSG00000020308.8_79505717_79511961_2	chr10	+	843	2	NNC	ENSMUSG00000020308.8	novel	368	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	0	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8479	False	NA	11	True	AATAAA	-13	NA	79505716	79511961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_79505832_79511233
ENSMUSG00000020308.8_79505717_79511961_3	chr10	+	897	2	FSM	ENSMUSG00000020308.8	ENSMUST00000219585.2	368	2	0	-529	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8479	False	NA	11	True	AATAAA	-13	NA	79505716	79511961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79505886_79511233
ENSMUSG00000020309.7_30926707_30936350_1	chr11	-	1279	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	-16	-245	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_30927747_30936111
ENSMUSG00000020321.17_21507242_21521815_1	chr11	-	1289	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	119	550	119	-455	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	1936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	-8	True	AATAAA	-19	NA	21521815	21507241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020321.17_21507242_21521934_1	chr11	-	1408	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	0	550	0	-455	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	1939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	-8	True	AATAAA	-19	NA	21521934	21507241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020326.8_40641575_40646138_1	chr11	-	1316	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	2196	0	-1658	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGTGAATTGTTGACT	NA	False	NA	87	True	TATAAA	-23	NA	40646138	40641574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020326.8_40641667_40646138_1	chr11	-	1224	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	2288	0	-1750	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAAAATTTTCCAGTAT	NA	False	NA	-5	True	GATAAA	-21	NA	40646138	40641666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020328.11_40624773_40630873_1	chr11	+	1298	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	279	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624772	40630873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_40624773_40630873_2	chr11	+	1399	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	-259	-563	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624772	40630873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_40624773_40630873_3	chr11	+	1223	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	0	-496	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624772	40630873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
ENSMUSG00000020330.17_40592222_40624243_1	chr11	-	3645	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	208.337481440185	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624243	40592221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUSG00000020349.5_51989870_52013441_1	chr11	+	1576	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	5164	362	2922	multi-exon	TRUE	canonical	3	1809	junction_6	129.264586539908	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGGTTTGAATTGTATCA	NA	False	NA	27	True	AATAAA	-17	NA	51989869	52013441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52013566_1	chr11	+	1701	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	5039	362	3047	multi-exon	FALSE	canonical	3	1809	junction_6	129.264586539908	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGGCAACTCCTTGG	NA	False	NA	24	True	AATAAA	-20	NA	51989869	52013566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52014219_1	chr11	+	2354	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	4386	362	3700	multi-exon	FALSE	canonical	3	1809	junction_6	129.264586539908	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTGAATTTGGAACCA	NA	False	NA	11	True	AATAAA	-18	NA	51989869	52014219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020358.18_51490927_51497198_1	chr11	-	1974	6	ISM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	476	0	476	0	3prime_fragment	FALSE	canonical	3	2171	junction_1	422.285969456718	1528	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTCTTGACCTTGAGT	NA	False	NA	-11	True	AATAAA	-16	NA	51497198	51490926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020358.18_51491696_51497198_1	chr11	-	1205	6	ISM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	476	769	476	0	3prime_fragment	FALSE	canonical	3	2171	junction_1	422.285969456718	1233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTAAATGTGGGATG	NA	False	NA	-17	True	AATAAA	-22	NA	51497198	51491695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020358.18_51491696_51497198_2	chr11	-	1346	7	ISM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	476	-305	476	0	3prime_fragment	FALSE	canonical	3	1798	junction_2	628.220414256723	1404	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTAAATGTGGGATG	NA	False	NA	-17	True	AATAAA	-22	NA	51497198	51491695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020358.18_51492001_51497198_1	chr11	-	1041	7	ISM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	476	0	476	0	3prime_fragment	FALSE	canonical	3	1798	junction_2	628.220414256723	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTGTTCTAGATCAGG	NA	False	NA	92	True	GGGGCT	-16	NA	51497198	51492000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020361.14_53152401_53160584_1	chr11	-	1077	8	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	30700	1760	-2516	1306	3prime_fragment	FALSE	canonical	3	1816	junction_4	182.057290825875	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAAGTTGTCAACTTTG	NA	False	NA	-44	True	ATTAAA	-16	NA	53160584	53152400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514
ENSMUSG00000020368.16_50185780_50216500_1	chr11	-	3253	15	NNC	ENSMUSG00000020368.16	novel	4281	15	NA	NA	0	-486	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_14	1051.7507173416	387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8136	False	NA	-2	True	AATAAA	-23	NA	50216500	50185779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216355
ENSMUSG00000020368.16_50186607_50216500_1	chr11	-	2462	15	FSM	ENSMUSG00000020368.16	ENSMUST00000179865.8	4281	15	0	1819	0	419	multi-exon	FALSE	canonical	3	497	junction_14	977.081357713797	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAATCACGTTCAAGTGC	8136	False	NA	-6	True	ATTAAA	-24	NA	50216500	50186606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216319
ENSMUSG00000020372.16_48691187_48696920_1	chr11	+	1106	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	341	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	8601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATATGTGAGTCCTGGA	NA	False	NA	28	True	AATAAA	-20	NA	48691186	48696920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUSG00000020385.17_51154013_51172591_1	chr11	+	1786	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51154012	51172591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_51154013_51172591_2	chr11	+	1845	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51154012	51172591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020386.6_51654521_51682582_1	chr11	+	1024	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	7	170	0	-170	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTGAAACTTTTATGTA	3572	False	NA	6	True	TATAAA	-18	NA	51654520	51682582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUSG00000020390.13_51877085_51891306_1	chr11	-	1026	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	5	761	0	409	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891306	51877084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUSG00000020390.13_51877085_51891590_1	chr11	-	995	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	-1	-409	-1	409	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891590	51877084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ENSMUSG00000020390.13_51877211_51891590_1	chr11	-	869	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	-1	-283	-1	283	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTCAAATATTGAATG	NA	False	NA	-30	True	AATATA	-20	NA	51891590	51877210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ENSMUSG00000020390.13_51877291_51891306_1	chr11	-	820	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	5	967	0	203	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTGTATTTTTTTCC	NA	False	NA	-47	True	CATAAA	-12	NA	51891306	51877290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUSG00000020392.9_51858488_51867071_1	chr11	+	742	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	1090	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATACAGTTCTTGTTTTG	NA	False	NA	16	True	TTTAAA	-13	NA	51858487	51867071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUSG00000020392.9_51858488_51867101_1	chr11	+	772	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	1060	0	30	multi-exon	FALSE	canonical	3	1066	junction_1	20	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTTTGTCCTGAGCCA	NA	False	NA	46	True	AATACA	-23	NA	51858487	51867101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUSG00000020392.9_51858488_51868161_1	chr11	+	1298	4	NNC	ENSMUSG00000020392.9	novel	1832	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	504.667107001129	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_51858785_51860970_51861071_51866726_51867028_51867561
ENSMUSG00000020397.16_46327788_46332356_1	chr11	+	1016	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	36	-671	0	2	multi-exon	FALSE	canonical	3	22	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_46327837_46331389
ENSMUSG00000020397.16_46327788_46332356_2	chr11	+	1368	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	-13	1192	0	2	multi-exon	FALSE	canonical	3	262	junction_1	137	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_46328019_46330632_46330803_46331389
ENSMUSG00000020397.16_46327788_46332356_3	chr11	+	1114	3	NNC	ENSMUSG00000020397.16	novel	1193	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_46327837_46330704_46330803_46331389
ENSMUSG00000020402.12_52251962_52280224_1	chr11	+	1747	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	275	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5406	False	NA	30	True	AATAAA	-26	NA	52251961	52280224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUSG00000020407.14_9068103_9086168_1	chr11	+	1159	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	-4	2	0	1	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	1888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068102	9086168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_9068787_9086168_1	chr11	+	1180	9	NIC	ENSMUSG00000020407.14	novel	518	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068786	9086168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_9068978_9086168_1	chr11	+	1173	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	191	1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	930.094887632439	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068977	9086168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_9069052_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020409.11_43324571_43337138_1	chr11	+	1970	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-15	1670	0	926	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTCTCAACAGTCAAGAA	NA	False	NA	14	True	AATAAA	-19	NA	43324570	43337138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_43324571_43337138_2	chr11	+	2049	17	NIC	ENSMUSG00000020409.11	novel	1662	16	NA	NA	0	926	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTCTCAACAGTCAAGAA	NA	False	NA	14	True	AATAAA	-19	NA	43324570	43337138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_43324571_43337862_1	chr11	+	2694	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-15	946	0	-946	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324570	43337862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_43324571_43337862_2	chr11	+	2773	17	NIC	ENSMUSG00000020409.11	novel	1662	16	NA	NA	0	-946	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324570	43337862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020412.17_4587747_4601423_1	chr11	+	749	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	0	-31962	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.679912280672	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587746	4601423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4601308
ENSMUSG00000020415.17_43311096_43316513_1	chr11	-	676	5	FSM	ENSMUSG00000020415.17	ENSMUST00000121638.8	948	5	277	-5	277	0	multi-exon	FALSE	canonical	3	8449	junction_1	727.283129186976	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43316513	43311095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409
ENSMUSG00000020415.17_43311096_43316513_2	chr11	-	755	5	NIC	ENSMUSG00000020415.17	novel	700	6	NA	NA	277	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_1	4118.28200679604	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43316513	43311095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_43311236_43311854_43312093_43313719_43313814_43315545_43315725_43316409
ENSMUSG00000020420.9_27560010_27577286_1	chr7	+	547	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	0	2964	0	-1706	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGATCTCAAGATTTGC	3327	False	NA	6	True	AATAAA	-15	NA	27560009	27577286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
ENSMUSG00000020424.4_4168225_4172409_1	chr11	+	1521	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
ENSMUSG00000020430.13_3914009_3929221_1	chr11	+	2094	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	34	783	0	-783	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	953	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	25	True	NA	NA	NA	3914008	3929221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000020432.13_3867192_3882044_1	chr11	-	1855	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	46.5015597773709	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3882012
ENSMUSG00000020432.13_3867192_3882044_2	chr11	-	1892	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
ENSMUSG00000020444.20_59074701_59082638_1	chr11	-	938	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	140	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUSG00000020448.17_3365982_3402336_1	chr11	-	2741	6	NIC	ENSMUSG00000020448.17	novel	2787	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	55.8161267018771	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6842	False	NA	-5	True	ATTAAA	-14	NA	3402336	3365981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3382399_3382621_3402208
ENSMUSG00000020451.18_3295477_3321343_1	chr11	-	2439	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	33	1221	-8	-1221	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGAGTCTGTTACTCG	9847	False	NA	-22	True	GATAAA	-16	NA	3321343	3295476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
ENSMUSG00000020459.15_29476447_29495452_2	chr11	+	2955	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	-10	-204	0	173	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	6	True	NA	NA	NA	29476446	29495452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020460.16_29495846_29497896_1	chr11	-	578	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	213	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	30309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497896	29495845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUSG00000020462.15_29171532_29197301_1	chr11	-	1556	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	108	0	-13	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197301	29171531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
ENSMUSG00000020462.15_29171818_29197301_1	chr11	-	1270	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	108	286	-13	-286	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGTTAGTTTCAAGCAAA	NA	False	NA	NA	False	AATAAA	-21	NA	29197301	29171817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
ENSMUSG00000020464.16_29080748_29111680_1	chr11	+	2559	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	148	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	8	True	AATAAA	-20	NA	29080747	29111680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUSG00000020471.12_5822188_5828219_1	chr11	-	1502	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	880.90807692971	1114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9578	False	NA	-6	True	AATAAA	-17	NA	5828219	5822187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823504_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ENSMUSG00000020476.15_5738488_5750458_1	chr11	+	1830	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	0	171	0	170	multi-exon	FALSE	canonical	3	305	junction_7	40.5239126936183	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGACTAGCCCGTGAGTT	NA	False	NA	29	True	NA	NA	NA	5738487	5750458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUSG00000020477.11_5654171_5657687_1	chr11	-	807	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	188	0	155	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTCTCTTGGTCTC	NA	False	NA	0	True	NA	NA	NA	5657687	5654170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ENSMUSG00000020477.11_5654326_5657687_1	chr11	-	652	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	343	0	0	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657687	5654325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ENSMUSG00000020477.11_5654326_5657687_2	chr11	-	631	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657687	5654325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
ENSMUSG00000020483.15_87872089_87878359_2	chr11	-	738	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	0	1738	0	-1108	multi-exon	FALSE	canonical	3	615	junction_2	8	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87878359	87872088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_87872397_87874697_87874837_87878068
ENSMUSG00000020492.12_87000077_87013036_1	chr11	+	595	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	2425	0	103	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGCATTCATTTTAGG	NA	False	NA	5	True	AATAAA	-17	NA	87000076	87013036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_87000077_87013690_1	chr11	+	1249	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	1771	0	757	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTTTAGACTTTCTAT	NA	False	NA	5	True	AATAAA	-23	NA	87000076	87013690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020514.9_58062487_58070392_1	chr11	+	902	7	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	483.207138698187	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1481	False	NA	13	True	AGTAAA	-16	NA	58062486	58070392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUSG00000020515.14_57993721_58009420_1	chr11	+	2297	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1258	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	598	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57993720	58009420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_57994828_58008673_1	chr11	+	1439	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	-151	747	-151	589	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTCATTCTTCTTCT	NA	False	NA	16	True	AGTAAA	-17	NA	57994827	58008673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_57994979_58008673_1	chr11	+	1288	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	747	0	589	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTCATTCTTCTTCT	NA	False	NA	16	True	AGTAAA	-17	NA	57994978	58008673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020516.16_86393425_86435600_1	chr11	-	1772	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	31	3728	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTCGATGGAGGAAA	NA	False	NA	NA	False	AATAAA	-35	NA	86435600	86393424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUSG00000020521.8_86375511_86387370_1	chr11	+	1943	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	28	2481	0	-2481	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGGTGGACCTGTTA	NA	False	NA	3	True	AATAAA	-14	NA	86375510	86387370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
ENSMUSG00000020523.15_57374618_57409453_2	chr11	-	1768	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	-10	799	-10	0	multi-exon	FALSE	canonical	3	63	junction_13	118.75144346678	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409453	57374617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ENSMUSG00000020526.13_84801958_84807175_1	chr11	-	799	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	17	182	0	159	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGCTATTTATATTTAG	NA	False	NA	-113	True	NA	NA	NA	84807175	84801957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ENSMUSG00000020528.15_61620476_61652875_1	chr11	-	1679	10	NIC	ENSMUSG00000020528.15	novel	1771	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	255	False	NA	-3	True	AATAAA	-26	NA	61652875	61620475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
ENSMUSG00000020528.15_61620476_61652875_2	chr11	-	1923	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	255	False	NA	-3	True	AATAAA	-26	NA	61652875	61620475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
ENSMUSG00000020528.15_61620604_61652875_3	chr11	-	1700	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	13	124	-9	-124	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTTGGTTCCAACAC	255	False	NA	-131	True	AATAAA	-33	NA	61652875	61620603	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
ENSMUSG00000020530.15_84723408_84760802_1	chr11	-	2526	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	226	-224	226	-221	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84760802	84723407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84723408_84760802_2	chr11	-	2532	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	762	221	226	-221	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84760802	84723407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84723798_84760802_1	chr11	-	2142	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	762	611	226	0	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84760802	84723797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84723798_84760802_2	chr11	-	2136	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	226	166	226	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84760802	84723797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84742657_84760802_1	chr11	-	1354	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	226	551	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTGTTTTGTTTGTAT	NA	False	NA	0	True	ATTAAA	-16	NA	84760802	84742656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84748755_84760802_1	chr11	-	729	5	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	226	2790	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	230.740519848595	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84760802	84748754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020534.15_60679177_60701988_1	chr11	-	2508	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	103	247	-71	-247	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGCTTTATATTCCAC	NA	False	NA	NA	False	NA	NA	NA	60701988	60679176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUSG00000020541.13_90536516_90578405_1	chr11	-	2055	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	28	2225	0	0	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	-1	True	ATTAAA	-18	NA	90578405	90536515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
ENSMUSG00000020547.6_36142244_36206765_1	chr12	-	1402	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	59	410	0	-410	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAACGCCACACTTTTC	NA	False	NA	NA	False	AAAAAG	-10	NA	36206765	36142243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUSG00000020561.9_33479634_33487778_1	chr12	+	712	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	3613	0	64	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAAGACAAAGATA	NA	False	NA	43	True	NA	NA	NA	33479633	33487778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ENSMUSG00000020561.9_33479634_33488030_1	chr12	+	964	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	3361	0	316	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAGTGAAGAGGCTA	NA	False	NA	NA	False	AAAAAG	-6	NA	33479633	33488030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ENSMUSG00000020561.9_33479634_33489407_1	chr12	+	2341	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	1984	0	1693	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTGTCTTTCCCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	33479633	33489407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ENSMUSG00000020571.14_17316596_17334372_1	chr12	+	1726	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	0	399	0	-399	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	3639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020572.9_32870334_32901099_1	chr12	+	2278	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	0	2249	0	-2249	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTGGTGTTGTACA	NA	False	NA	14	True	AATAAA	-17	NA	32870333	32901099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
ENSMUSG00000020577.18_36065554_36092510_1	chr12	-	956	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	-22	998	-11	-998	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTCCAGACATTTTTTT	NA	False	NA	-8	True	ATTAAA	-15	NA	36092510	36065553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ENSMUSG00000020585.5_8972048_8988226_1	chr12	+	873	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	384	516	384	-516	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTCTTGTTTATTTTA	NA	False	NA	13	True	AATAAA	-13	NA	8972047	8988226	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUSG00000020585.5_8972048_8988742_1	chr12	+	1389	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	384	0	384	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8972047	8988742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUSG00000020589.18_12312170_12422952_1	chr12	+	1335	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	-8	444	0	-388	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGACTGATTCAACCCAG	NA	False	NA	-32	True	AATATA	-17	NA	12312169	12422952	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ENSMUSG00000020592.15_8821323_8843064_1	chr12	+	2506	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	651	0	2	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTATGAACTCTACTGCT	NA	False	NA	7	True	AATAAA	-16	NA	8821322	8843064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
ENSMUSG00000020608.8_11316170_11368248_1	chr12	+	3782	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	283	1538	0	204	multi-exon	TRUE	canonical	3	574	junction_19	50.8148542090207	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTTTCCAGGTTG	4600	False	NA	15	True	AATAAA	-16	NA	11316169	11368248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ENSMUSG00000020610.18_109316808_109327584_1	chr11	+	1390	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	36	1390	0	-231	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCGTGGGTAGAGTTC	NA	False	NA	12	True	AATAAA	-14	NA	109316807	109327584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_109316808_109327815_1	chr11	+	1621	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	36	1159	0	0	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109316807	109327815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_109317046_109327584_1	chr11	+	1607	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	-6	231	0	-231	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCGTGGGTAGAGTTC	NA	False	NA	12	True	AATAAA	-14	NA	109317045	109327584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020611.15_109253767_109287410_1	chr11	+	1265	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	110	4785	110	-4785	multi-exon	TRUE	canonical	3	267	junction_2	46.1976430375211	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTCAGTTGTGTGTGTC	NA	False	NA	NA	False	TTTAAA	-26	NA	109253766	109287410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
ENSMUSG00000020612.17_109541747_109558621_1	chr11	+	1498	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	1861	0	819	multi-exon	TRUE	canonical	3	1417	junction_9	119.858458191318	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	NA	False	NA	28	True	AATAAA	-17	NA	109541746	109558621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUSG00000020612.17_109541747_109560003_1	chr11	+	2880	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	479	0	-479	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATTTGATATTTGTTT	NA	False	NA	11	True	AATAAA	-21	NA	109541746	109560003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUSG00000020629.13_28725230_28731607_1	chr12	+	1085	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	567	0	-122	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTATGTGATTTTTATA	NA	False	NA	8	True	ATTAAA	-15	NA	28725229	28731607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUSG00000020634.13_4930020_4957481_1	chr12	-	1484	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	224	988	-42	370	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTAATCTATATACACAGT	NA	False	NA	-27	True	AATAAA	-26	NA	4957481	4930019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020634.13_4930176_4957481_1	chr12	-	1328	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	224	1144	-42	214	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGCATCAATGTAGTT	NA	False	NA	-45	True	AATACA	-23	NA	4957481	4930175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020634.13_4930390_4957481_1	chr12	-	1114	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	224	1358	-42	0	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGAAAAAAATACCTATTT	NA	False	NA	-80	True	NA	NA	NA	4957481	4930389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020649.12_24758240_24763340_1	chr12	+	1388	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	805	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTAAAAAGCTGTGTAG	NA	False	NA	56	True	ATTAAA	-13	NA	24758239	24763340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUSG00000020650.16_31645360_31684657_1	chr12	-	1784	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-23	4394	0	0	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATAATTGGAGTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	31684657	31645359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
ENSMUSG00000020652.18_4263482_4283938_1	chr12	-	2147	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283938	4263481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
ENSMUSG00000020652.18_4263482_4283938_2	chr12	-	2177	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	356	1815	0	0	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283938	4263481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
ENSMUSG00000020661.16_3952381_3958997_1	chr12	+	1907	6	ISM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	10653	-1155	2100	450	3prime_fragment	FALSE	canonical	3	122	junction_5	9.85900603509299	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCTTTCTGTCTAAGT	NA	False	NA	9	True	AATAAA	-18	NA	3952380	3958997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ENSMUSG00000020664.11_31381561_31401424_1	chr12	-	2231	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	28	285	-11	-285	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGTTATTCTGAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	31401424	31381560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ENSMUSG00000020664.11_31381708_31401424_1	chr12	-	2084	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	28	432	-11	-432	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAACTTCCAAATTG	NA	False	NA	-4	True	AATAAA	-16	NA	31401424	31381707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ENSMUSG00000020668.11_3438137_3454066_1	chr12	+	1917	6	ISM	ENSMUSG00000020668.11	ENSMUST00000219895.2	2962	8	756	867	756	2	3prime_fragment	FALSE	canonical	3	43	junction_1	11.2071405808975	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATTGACCTTTATTTT	NA	False	NA	6	True	AGTAAA	-21	NA	3438136	3454066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUSG00000020671.10_3299429_3359969_1	chr12	-	1512	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	2001	0	-2001	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTGTACAACAGTGGG	NA	False	NA	-14	True	AATAAA	-18	NA	3359969	3299428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000020671.10_3299701_3359969_1	chr12	-	1240	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	2273	0	-2273	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATATTTTTGTTTCTCAT	NA	False	NA	-4	True	AATAAA	-27	NA	3359969	3299700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000020677.8_83832991_83852656_1	chr11	+	1833	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	103	1258	103	-1258	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGCAGTGTAACTTATG	NA	False	NA	NA	False	AATAAA	-16	NA	83832990	83852656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUSG00000020677.8_83832991_83853014_1	chr11	+	2191	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	103	900	103	-900	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACACTTGTGTGTATGGA	NA	False	NA	21	True	AATAAA	-22	NA	83832990	83853014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUSG00000020677.8_83832991_83853914_1	chr11	+	3091	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	103	0	103	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832990	83853914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUSG00000020691.14_105017305_105019136_1	chr11	+	1663	2	ISM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	12084	0	-7346	5prime_fragment	FALSE	canonical	3	278	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTTACAAG	NA	False	NA	NA	False	NA	NA	NA	105017304	105019136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_105017433_105017601
ENSMUSG00000020691.14_105017305_105031503_1	chr11	+	2096	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	-283	0	283	multi-exon	FALSE	canonical	3	226	junction_6	21.0698243941424	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGCTGAGTCAGCACAG	NA	False	NA	NA	False	NA	NA	NA	105017304	105031503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020691.14_105017305_105031972_1	chr11	+	2565	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	-752	0	752	multi-exon	FALSE	canonical	3	226	junction_6	21.0698243941424	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	4	True	AATAAA	-14	NA	105017304	105031972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020705.7_106107752_106139756_1	chr11	+	3802	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	209	0	-209	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAATTTTGTGATTTTT	NA	False	NA	8	True	TATAAA	-16	NA	106107751	106139756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUSG00000020706.14_106139968_106146631_1	chr11	-	2870	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	274	0	-1	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146631	106139967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ENSMUSG00000020717.20_106545044_106615248_1	chr11	-	3231	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	134	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ENSMUSG00000020717.20_106545044_106615248_2	chr11	-	3260	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	243	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020717.20_106545044_106615248_3	chr11	-	3203	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_14	370.599266494863	130	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020717.20_106545044_106615248_4	chr11	-	3288	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	203	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ENSMUSG00000020717.20_106545044_106615248_5	chr11	-	3283	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	209	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020718.13_106659079_106670350_1	chr11	-	1390	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4310	False	NA	NA	False	AATAAA	-33	NA	106670350	106659078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ENSMUSG00000020719.15_106672374_106679320_1	chr11	-	2328	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	38	1193	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUSG00000020719.15_106672374_106679709_1	chr11	-	2478	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_13	1103.10076146326	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9265	False	NA	-9	True	AATAAA	-45	NA	106679709	106672373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
ENSMUSG00000020719.15_106672374_106680011_1	chr11	-	2463	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8963	False	NA	-9	True	AATAAA	-45	NA	106680011	106672373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
ENSMUSG00000020720.14_107370354_107388617_1	chr11	+	1478	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	44	382	0	58	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	12	True	ATTAAA	-15	NA	107370353	107388617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUSG00000020720.14_107370354_107388866_1	chr11	+	1727	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	44	133	0	-133	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	2060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCAGGGTGGTGATTAA	NA	False	NA	14	True	AATAAA	-26	NA	107370353	107388866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUSG00000020728.18_108316092_108363011_1	chr11	+	824	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	74	388430	0	-608	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108316091	108363011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
ENSMUSG00000020736.13_115381246_115382650_1	chr11	-	1098	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	27	-218	-9	0	multi-exon	FALSE	canonical	3	183	junction_2	15.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382650	115381245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115382025_115382096_115382198_115382432
ENSMUSG00000020737.13_115388858_115405213_2	chr11	-	696	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	679	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTACCGCTGTCTTTCCCT	NA	False	NA	-12	True	ATTAAA	-14	NA	115405213	115388857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUSG00000020738.17_115413928_115425460_1	chr11	-	819	3	ISM	ENSMUSG00000020738.17	ENSMUST00000021084.10	1000	4	1595	0	1183	0	3prime_fragment	FALSE	canonical	0	0	junction_2	1909.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115425460	115413927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_115414596_115421171_115421244_115425381
ENSMUSG00000020739.12_115455351_115474732_1	chr11	+	1974	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_16	235.991113297843	554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473788_115473855_115474151_115474254_115474546
ENSMUSG00000020739.12_115455351_115474732_2	chr11	+	2036	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_16	299.37137842857	269	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
ENSMUSG00000020743.16_115498744_115503746_1	chr11	-	1896	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-16	-1259	0	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_2	chr11	-	1449	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_3	chr11	-	1305	6	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	134.525239267581	359	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503628
ENSMUSG00000020744.14_115505808_115518940_1	chr11	-	1472	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	31	804	-2	212	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTGTCACTCCTATA	NA	False	NA	-11	True	ATTAAA	-13	NA	115518940	115505807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
ENSMUSG00000020745.16_74568197_74614874_1	chr11	-	1759	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	622	3422	-190	-3421	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAGTTGACAGTGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	74614874	74568196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020745.16_74568386_74614874_1	chr11	-	1570	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	622	3611	-190	-3610	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGGATGTAGATTGA	NA	False	NA	-8	True	AATAAA	-20	NA	74614874	74568385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020745.16_74568386_74615176_1	chr11	-	1872	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	320	3611	-15	-3610	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGGATGTAGATTGA	NA	False	NA	-8	True	AATAAA	-20	NA	74615176	74568385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020755.10_115824463_115855475_1	chr11	+	1223	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	355	2076	0	-886	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCATGTCAGGTGGAC	399	False	NA	16	True	ATTAAA	-17	NA	115824462	115855475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUSG00000020773.12_115996578_115998566_1	chr11	-	1279	3	FSM	ENSMUSG00000020773.12	ENSMUST00000127235.2	692	3	0	-587	0	0	multi-exon	FALSE	canonical	3	127	junction_2	17	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998566	115996577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997830_115998249
ENSMUSG00000020773.12_115996578_116000472_1	chr11	-	1604	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	600	0	591	0	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116000472	115996577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ENSMUSG00000020775.14_116022643_116029630_1	chr11	-	1421	8	NIC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	763	junction_7	35.5883493891596	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	471	False	NA	-2	True	AATAAA	-20	NA	116029630	116022642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116026152_116029267_116029448_116029536
ENSMUSG00000020780.16_116135992_116164961_1	chr11	-	2444	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	82	0	0	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9899	False	NA	-2	True	ATTAAA	-17	NA	116164961	116135991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUSG00000020781.15_115705572_115713920_1	chr11	+	2052	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	180	junction_1	22.7063922038174	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5954	False	NA	NA	False	ATTAAA	-21	NA	115705571	115713920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUSG00000020783.15_72938696_72970891_1	chr11	+	2767	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	87	9252	0	-9252	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGTCATTATTTTGAAT	NA	False	NA	26	True	AATATA	-31	NA	72938695	72970891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
ENSMUSG00000020783.15_72938696_72971043_1	chr11	+	2919	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	87	9100	0	-9100	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGTGTCTCTGACTTA	NA	False	NA	11	True	NA	NA	NA	72938695	72971043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
ENSMUSG00000020792.16_116179935_116197553_1	chr11	-	2090	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	7	1108	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGCCGGGTGAGTGT	8927	False	NA	-6	True	CATAAA	-15	NA	116197553	116179934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020794.14_72498109_72575438_1	chr11	+	1946	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	1869	0	-1869	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498108	72575438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020801.9_72102550_72105879_1	chr11	-	622	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	539	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72105879	72102549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
ENSMUSG00000020803.4_72098441_72100613_1	chr11	+	685	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	68	228	0	-228	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTAAGTTTTTTAACACG	NA	False	NA	16	True	AATAAA	-16	NA	72098440	72100613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUSG00000020808.4_71933328_71938196_1	chr11	+	1062	6	NNC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.202448182704	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933327	71938196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937916
ENSMUSG00000020818.17_116744588_116765538_1	chr11	+	2337	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	62	junction_1	8.80424857096892	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744587	116765538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ENSMUSG00000020831.19_70126032_70128694_1	chr11	-	760	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	190.587742260619	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128694	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020832.15_77964373_77971209_1	chr11	-	1843	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	171	0	-171	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTATTATTATTATTATT	NA	False	NA	NA	False	NA	NA	NA	77971209	77964372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUSG00000020840.11_76836565_76877673_1	chr11	+	1730	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	235	532	0	18	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTTGCTCTCCTCATCTC	NA	False	NA	3	True	AATAAA	-18	NA	76836564	76877673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020840.11_76836565_76878205_1	chr11	+	2081	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	205.538036133268	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836564	76878205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_76836720_76837067_76837085_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020840.11_76836565_76878205_2	chr11	+	2262	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	235	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836564	76878205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020843.16_76298017_76305398_1	chr11	+	1049	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	48	1720	0	243	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTAGTATCTTTGCT	NA	False	NA	17	True	AGTAAA	-27	NA	76298016	76305398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305398_2	chr11	+	852	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	-490	0	243	multi-exon	FALSE	canonical	3	21	junction_1	125	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTAGTATCTTTGCT	NA	False	NA	17	True	AGTAAA	-27	NA	76298016	76305398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76298269_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305530_1	chr11	+	1181	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	48	1588	0	375	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTATATGGGGGCTGT	NA	False	NA	NA	False	NA	NA	NA	76298016	76305530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020849.14_75623739_75656404_1	chr11	+	1554	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	0	-955	0	-267	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3035	False	NA	16	True	NA	NA	NA	75623738	75656404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
ENSMUSG00000020849.14_75623739_75656404_2	chr11	+	1789	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	44	267	0	-267	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3035	False	NA	16	True	NA	NA	NA	75623738	75656404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
ENSMUSG00000020857.12_93840643_93846702_1	chr11	-	626	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	383	3	-93	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	3657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846702	93840642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
ENSMUSG00000020863.16_94181965_94212784_1	chr11	-	1995	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	0	3249	0	0	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212784	94181964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020863.16_94181965_94212784_2	chr11	-	2061	13	NIC	ENSMUSG00000020863.16	novel	5244	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_1	99.7659413605443	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212784	94181964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_94182405_94183232_94183299_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020869.9_94532044_94536042_1	chr11	+	2099	2	ISM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	11451	0	11404	0	3prime_fragment	FALSE	canonical	3	2480	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94532043	94536042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_94532220_94534119
ENSMUSG00000020873.16_95275732_95282602_1	chr11	+	1309	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	214	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275731	95282602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020882.18_97895751_97903826_1	chr11	-	1291	9	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-449	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_6	25.6855990780826	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97903826	97895750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637
ENSMUSG00000020888.17_69891647_69900937_1	chr11	+	2742	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	226	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7361	False	NA	12	True	AATAAA	-16	NA	69891646	69900937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ENSMUSG00000020897.13_68936473_68942490_1	chr11	+	1757	9	NNC	ENSMUSG00000020897.13	novel	1831	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	184.266790279746	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_68936497_68936694_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUSG00000020903.14_67857316_68094705_1	chr11	+	828	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	297	3269	0	109	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTACCTTGTTT	NA	False	NA	17	True	AATAAA	-17	NA	67857315	68094705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
ENSMUSG00000020910.17_66928731_66943420_1	chr11	-	1443	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-24	-136	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943420	66928730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_66928867_66943420_1	chr11	-	1209	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943420	66928866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
ENSMUSG00000020914.18_98883769_98887691_1	chr11	-	1192	7	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1141	0	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	548.684487357413	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98887691	98883768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554
ENSMUSG00000020914.18_98883769_98891865_1	chr11	-	1720	11	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	23150	0	221	0	3prime_fragment	FALSE	canonical	3	1094	junction_4	253.173873059603	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98891865	98883768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799
ENSMUSG00000020914.18_98909395_98915016_1	chr11	-	826	5	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-1	25626	-1	-1976	5prime_fragment	FALSE	canonical	3	1379	junction_1	89.0182565544844	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCCTTTAACTCACTA	NA	False	NA	NA	False	NA	NA	NA	98915016	98909394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020917.18_100367182_100418695_1	chr11	-	4262	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	131	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418695	100367181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUSG00000020917.18_100367182_100418695_2	chr11	-	4292	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	131	3	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418695	100367181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUSG00000020921.7_102043372_102047181_1	chr11	-	1589	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4514	False	NA	0	True	AATAAA	-16	NA	102047181	102043371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
ENSMUSG00000020922.12_102054298_102076086_1	chr11	-	1245	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	36	975	1	480	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGCTTCTTGCAGGTC	6392	False	NA	NA	False	ATTAAA	-15	NA	102076086	102054297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUSG00000020936.9_102919411_102956931_1	chr11	+	1815	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	239	2807	0	-2807	multi-exon	TRUE	canonical	3	928	junction_6	43.300411312535	577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	14	True	AATAAA	-20	NA	102919410	102956931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
ENSMUSG00000020946.14_103567675_103588524_1	chr11	-	2925	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-4	-1877	0	0	multi-exon	TRUE	canonical	3	79	junction_1	134.545531326759	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588524	103567674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103567675_103588524_2	chr11	-	3066	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	200	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588524	103567674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103569920_103588524_2	chr11	-	821	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	200	2245	0	-161	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTGTTTTCTGTGAC	NA	False	NA	-2	True	NA	NA	NA	103588524	103569919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103569920_103588524_3	chr11	-	680	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-4	368	0	-161	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTGTTTTCTGTGAC	NA	False	NA	-2	True	NA	NA	NA	103588524	103569919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020956.15_52045683_52053284_1	chr12	-	1171	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	1393	0	-1393	multi-exon	FALSE	canonical	3	170	junction_1	5	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_52046657_52051661_52051732_52053157
ENSMUSG00000020956.15_52045683_52053284_2	chr12	-	1381	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	0	-1393	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_52046657_52051661_52051732_52052947
ENSMUSG00000020956.15_52045683_52053284_3	chr12	-	1245	4	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	0	-1393	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_2	77.1895214535122	241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_52046657_52051079_52051154_52051661_52051732_52053157
ENSMUSG00000020956.15_52045964_52053284_1	chr12	-	890	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	1674	0	-1674	multi-exon	FALSE	canonical	3	170	junction_1	5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACTTTTCAAAGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	52053284	52045963	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_52046657_52051661_52051732_52053157
ENSMUSG00000020973.8_69235861_69243878_1	chr12	-	2065	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1325	0	1325	0	multi-exon	FALSE	canonical	3	240	junction_2	19	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	False	NA	-8	True	AATAAA	-16	NA	69243878	69235860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUSG00000020973.8_69236613_69243878_1	chr12	-	1313	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1325	752	1325	-752	multi-exon	FALSE	canonical	3	240	junction_2	19	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGGTTGTTTGTGTTTT	NA	False	NA	-2	True	AGTAAA	-16	NA	69243878	69236612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUSG00000020978.11_69343661_69357239_1	chr12	+	1518	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	165	222	132	-222	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTGTCTATTGTTAAAG	NA	False	NA	15	True	AATAAA	-15	NA	69343660	69357239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
ENSMUSG00000020982.10_69358342_69403923_1	chr12	-	3670	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	16	1046	0	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAACACAAGAA	NA	False	NA	-30	True	NA	NA	NA	69403923	69358341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ENSMUSG00000020982.10_69387752_69403923_1	chr12	-	1371	14	ISM	ENSMUSG00000020982.10	ENSMUST00000220674.2	2370	20	-7	16487	0	0	5prime_fragment	FALSE	canonical	3	286	junction_8	27.062496156579	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403923	69387751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ENSMUSG00000020988.10_69737207_69771647_1	chr12	-	3142	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020988.10_69738653_69771647_1	chr12	-	1894	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	1446	0	-1446	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGCATAGAAGAAAGTCAG	NA	False	NA	NA	False	AATAAA	-20	NA	69771647	69738652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020988.10_69738933_69771647_1	chr12	-	1614	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	1726	0	-1726	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGTAGATATAATAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	69771647	69738932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020994.6_59113729_59119844_1	chr12	+	2486	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	940	0	-940	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTCATCTTTTTTAA	NA	False	NA	2	True	AATAAA	-13	NA	59113728	59119844	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000020994.6_59113729_59119980_1	chr12	+	2622	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	804	0	-804	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGGATGTCCTTGTTG	NA	False	NA	17	True	AATAAA	-17	NA	59113728	59119980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000020994.6_59113729_59120641_1	chr12	+	3283	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	143	0	-143	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGTTTAAAATTAGTAC	NA	False	NA	10	True	AATAAA	-16	NA	59113728	59120641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000021018.9_20536580_20541015_1	chr16	+	783	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	165	2	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	1069	False	NA	13	True	ATTAAA	-14	NA	20536579	20541015	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUSG00000021022.10_55328296_55349451_1	chr12	-	1483	13	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	332	2520	-4	-2520	3prime_fragment	FALSE	canonical	3	216	junction_9	34.6025047262959	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349451	55328295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021022.10_55328296_55349783_1	chr12	-	1696	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	2520	0	-2520	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349783	55328295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
ENSMUSG00000021022.10_55328296_55349783_2	chr12	-	1678	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	0	-2520	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_13	69.7240545793362	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349783	55328295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349717
ENSMUSG00000021023.15_55350046_55429281_1	chr12	+	2498	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	624	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55350045	55429281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
ENSMUSG00000021023.15_55423930_55429281_1	chr12	+	554	3	ISM	ENSMUSG00000021023.15	ENSMUST00000183654.2	943	7	73859	17	73859	0	3prime_fragment	FALSE	canonical	3	389	junction_1	18	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55423929	55429281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_55424048_55426066_55426263_55429041
ENSMUSG00000021025.9_55536614_55539432_1	chr12	-	1159	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	419	0	-419	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGGGTATACTTAGC	NA	False	NA	NA	False	NA	NA	NA	55539432	55536613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ENSMUSG00000021033.12_87194492_87211098_1	chr12	+	1257	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	399	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTTCGATATATCTTCC	NA	False	NA	16	True	ATTAAA	-21	NA	87194491	87211098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000021033.12_87194492_87211258_1	chr12	+	1417	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	239	0	160	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGCCTTTATAAATGTC	NA	False	NA	NA	False	NA	NA	NA	87194491	87211258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000021036.11_87356413_87435015_1	chr12	-	2015	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	114	4581	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	8810	False	NA	-11	True	ATTAAA	-14	NA	87435015	87356412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ENSMUSG00000021036.11_87356413_87435129_1	chr12	-	2129	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	0	4581	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	8696	False	NA	-11	True	ATTAAA	-14	NA	87435129	87356412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ENSMUSG00000021037.8_87313253_87320754_1	chr12	+	1334	9	NIC	ENSMUSG00000021037.8	novel	739	6	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	889.533691042672	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	-1	True	AGTAAA	-17	NA	87313252	87320754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_87313433_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUSG00000021037.8_87313632_87320754_1	chr12	+	1218	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	160	-1	148	1	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	-1	True	AGTAAA	-17	NA	87313631	87320754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUSG00000021039.10_87496680_87524006_1	chr12	-	2426	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4962	0	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_13	244.437985988436	397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87524006	87496679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87523785
ENSMUSG00000021039.10_87497033_87519049_1	chr12	-	1884	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	-5	353	-5	-353	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCAGCACTCCTTTTCA	NA	False	NA	-36	True	ATTAAA	-15	NA	87519049	87497032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUSG00000021040.16_87490682_87496694_1	chr12	+	403	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	16	2282	0	0	multi-exon	FALSE	canonical	3	3495	junction_2	126.36015546401	985	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490681	87496694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
ENSMUSG00000021048.8_76302187_76366577_1	chr12	+	3126	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	115	0	0	0	multi-exon	FALSE	canonical	3	837	junction_20	135.484134190258	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8026	False	NA	9	True	AATAAA	-17	NA	76302186	76366577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUSG00000021072.13_70499869_70514398_1	chr12	+	2379	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	416	0	-416	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGTTGAAGAGAAGTTT	NA	False	NA	12	True	AATAAA	-18	NA	70499868	70514398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUSG00000021076.7_70984689_71008835_1	chr12	+	1307	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	58	2657	0	0	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCTTGCTTATTTCAA	9703	False	NA	NA	False	AATAAA	-13	NA	70984688	71008835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_70984689_71009055_1	chr12	+	1527	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	58	2437	0	220	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATTTTATTAGTTTATT	9703	False	NA	5	True	AATAAA	-14	NA	70984688	71009055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_70984689_71009828_1	chr12	+	2078	14	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	0	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.5177106850144	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGCTCTTGTGCTTTCT	9703	False	NA	NA	False	AATAAA	-21	NA	70984688	71009828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71009566_71009787
ENSMUSG00000021079.17_71169947_71183447_1	chr12	-	978	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
ENSMUSG00000021079.17_71169947_71183447_2	chr12	-	880	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	-39	-123	0	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
ENSMUSG00000021094.11_72697184_72711580_1	chr12	-	1225	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	103	57	0	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTTGTACAAGAGC	NA	False	NA	-14	True	AATAAA	-18	NA	72711580	72697183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
ENSMUSG00000021096.12_72831009_72841338_1	chr12	+	1440	5	ISM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	23024	5255	532	0	3prime_fragment	FALSE	canonical	3	299	junction_2	42.9498253779919	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATCATGTATGCGTGAT	NA	False	NA	NA	False	AATAAA	-23	NA	72831008	72841338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ENSMUSG00000021103.13_73158916_73319626_1	chr12	+	1420	9	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	-11575	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	125.672938614485	414	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	7	True	AATAAA	-17	NA	73158915	73319626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_73159029_73170552_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021103.13_73170491_73319626_1	chr12	+	1369	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	1136	0	1	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	7	True	AATAAA	-17	NA	73170490	73319626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021111.16_105750997_105777671_1	chr12	+	1381	10	ISM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	5	2657	0	0	5prime_fragment	FALSE	canonical	3	944	junction_9	257.973776062224	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTATATTTTTTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	105750996	105777671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
ENSMUSG00000021111.16_105750997_105803121_1	chr12	+	2391	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	44	1945	0	4	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCTCAGGGTCCATAAAC	NA	False	NA	NA	False	AATAAA	-22	NA	105750996	105803121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUSG00000021111.16_105750997_105805203_1	chr12	+	4473	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	44	-137	0	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	12	True	AATAAA	-18	NA	105750996	105805203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUSG00000021113.6_74011300_74031159_1	chr12	+	1694	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	4581	0	278	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATCTTCTAGTGTGTG	NA	False	NA	3	True	AATAAA	-15	NA	74011299	74031159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ENSMUSG00000021114.10_78889776_78908327_1	chr12	-	1305	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	85	2277	-58	0	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	54	False	NA	-21	True	TTTAAA	-18	NA	78908327	78889775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021115.16_105976542_106041459_1	chr12	+	1424	14	NNC	ENSMUSG00000021115.16	novel	2520	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	273.081235068881	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_105976548_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_1	chr12	+	1557	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-24	209	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_2	chr12	+	1485	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	0	2226	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_3	chr12	+	1065	9	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	336.388168638554	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021115.16_105976551_106041459_4	chr12	+	1497	14	NIC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_13	331.233913308169	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106041265
ENSMUSG00000021115.16_105976551_106041668_1	chr12	+	1634	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	64	-189	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976550	106041668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021115.16_105976551_106041668_2	chr12	+	1694	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	0	2017	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976550	106041668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021116.11_78908859_78932095_1	chr12	+	1450	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	266	1689	0	-1689	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	3363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	24	True	AATAAA	-17	NA	78908858	78932095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
ENSMUSG00000021116.11_78908859_78932303_1	chr12	+	1658	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	266	1481	0	-1481	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	3475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACTTGAAAGCAGTGATA	NA	False	NA	26	True	ATTAAA	-19	NA	78908858	78932303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
ENSMUSG00000021124.14_79203103_79219441_1	chr12	-	1178	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	0	312	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGGAACAGCAACA	NA	False	NA	-75	True	NA	NA	NA	79219441	79203102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
ENSMUSG00000021131.15_80680796_80690622_1	chr12	-	800	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	493	0	0	0	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	6717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80690622	80680795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUSG00000021131.15_80680796_80690622_2	chr12	-	857	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	-16	-335	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	6761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80690622	80680795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ENSMUSG00000021131.15_80680952_80690622_1	chr12	-	644	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	493	156	0	-156	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTTCCGGTCCTTGAA	NA	False	NA	NA	False	AATACA	-26	NA	80690622	80680951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUSG00000021134.18_80992306_80996945_1	chr12	+	1166	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	332	0	-326	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTGCTCACACTTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	80992305	80996945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021134.18_80992306_80996945_2	chr12	+	1289	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	-53	332	0	-326	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTGCTCACACTTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	80992305	80996945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_80992306_80997132_1	chr12	+	1353	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	145	0	-139	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCTAAATTTGCTTGTA	NA	False	NA	7	True	ATTAAA	-29	NA	80992305	80997132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021136.14_81066208_81233188_1	chr12	+	3175	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7374	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	93	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066207	81233188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021139.18_81405800_81579651_1	chr12	-	849	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	28	166	0	-166	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	False	NA	-46	True	AATAAA	-19	NA	81579651	81405799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021139.18_81405800_81579651_2	chr12	-	712	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	0	-166	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	False	NA	-46	True	AATAAA	-19	NA	81579651	81405799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
ENSMUSG00000021139.18_81518869_81579651_1	chr12	-	787	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	5	1492	0	-1492	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	NA	False	NA	-8	True	ATTAAA	-12	NA	81579651	81518868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021149.9_9022516_9046086_1	chr13	-	2601	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	33	6149	0	0	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ENSMUSG00000021149.9_9022661_9046086_1	chr13	-	2456	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	33	6294	0	-145	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	-14	True	AGTAAA	-18	NA	9046086	9022660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ENSMUSG00000021177.17_99850776_99885563_1	chr12	+	1824	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTGTGAGACCTTTA	NA	False	NA	3	True	NA	NA	NA	99850775	99885563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
ENSMUSG00000021189.12_101888403_101924502_1	chr12	-	2117	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	3	3243	0	937	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGGGTTGACCCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	101924502	101888402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_101889340_101924502_1	chr12	-	1180	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	3	4180	0	0	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTTGTAACATTGTCTG	NA	False	NA	NA	False	AAGAAA	-34	NA	101924502	101889339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021190.15_102360343_102405925_1	chr12	-	1857	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	147	-14	147	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGGCTTTGTGGTTTG	7636	False	NA	-3	True	AAAACA	-29	NA	102405925	102360342	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ENSMUSG00000021193.11_6598195_6630078_1	chr13	+	3425	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	8	473	0	0	multi-exon	TRUE	canonical	3	407	junction_1	134.848435629472	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598194	6630078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ENSMUSG00000021196.15_6631218_6686686_1	chr13	-	2614	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_21	274.502022841759	830	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6686686	6631217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
ENSMUSG00000021196.15_6631218_6698761_1	chr13	-	2526	21	NIC	ENSMUSG00000021196.15	novel	2679	22	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_6	289.380247252642	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUSG00000021196.15_6631218_6698761_2	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	52	1414	0	0	multi-exon	FALSE	canonical	3	963	junction_15	143.890705562911	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUSG00000021218.11_3588130_3615821_1	chr13	+	2186	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	67	2050	0	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	36	True	AATAAA	-19	NA	3588129	3615821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021218.11_3588130_3616207_1	chr13	+	2572	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	67	1664	0	387	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTTTTGTAGTGCAGCA	NA	False	NA	7	True	AATAAA	-16	NA	3588129	3616207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021222.10_83567358_83588694_1	chr12	+	1895	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	118	-5	-50	0	multi-exon	FALSE	canonical	3	216	junction_9	23.528907060372	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTTGCCAAAGTATA	NA	False	NA	15	True	NA	NA	NA	83567357	83588694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUSG00000021240.7_84649307_84660929_1	chr12	-	2205	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3215	-120	1232	0	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84660929	84649306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
ENSMUSG00000021240.7_84649307_84664157_1	chr12	-	2442	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	-13	-120	-13	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84664157	84649306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
ENSMUSG00000021241.8_84820052_84821862_1	chr12	+	1608	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	-13	-752	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84820146_84820348
ENSMUSG00000021241.8_84820052_84821862_2	chr12	+	743	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	-47	-211	0	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84820146_84820348_84820452_84821316
ENSMUSG00000021242.10_84803266_84819688_1	chr12	-	1131	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	238	1930	0	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	2949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819688	84803265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021242.10_84803266_84819732_1	chr12	-	1175	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	194	1930	-44	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	3020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819732	84803265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021242.10_84803266_84819788_1	chr12	-	1231	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	138	1930	-100	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	3048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819788	84803265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021248.10_85387388_85421464_1	chr12	-	3499	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	-2174	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGGTGTATTTGTCTGT	8621	False	NA	-1	True	AATAAA	-16	NA	85421464	85387387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021248.10_85389562_85421464_1	chr12	-	1325	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8621	False	NA	-5	True	ATTAAA	-20	NA	85421464	85389561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021248.10_85389937_85421464_1	chr12	-	950	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	375	0	202	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGGTTACCTAGATAACG	8621	False	NA	NA	False	ATTAAA	-42	NA	85421464	85389936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021252.12_85862222_85871652_1	chr12	-	1525	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	-356	0	-328	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871652	85862221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ENSMUSG00000021255.18_86516891_86568402_1	chr12	+	3907	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	0	-2563	0	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	19	True	AATAAA	-19	NA	86516890	86568402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ENSMUSG00000021258.11_108145997_108169618_1	chr12	+	2632	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	159	-2	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGTGTGAGTACAGCC	NA	False	NA	26	True	AATAAA	-19	NA	108145996	108169618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
ENSMUSG00000021266.17_108825956_108860063_1	chr12	-	1859	11	NIC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860063	108825955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUSG00000021268.18_109506888_109511218_1	chr12	+	1554	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	0	26937	0	16	intron_retention	FALSE	canonical	3	281	junction_2	112.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAGAAATAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	109506887	109511218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_109506983_109509582_109509733_109509909
ENSMUSG00000021268.18_109506888_109538160_1	chr12	+	1807	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506887	109538160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021270.14_110657462_110662743_1	chr12	-	2772	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	423	-20	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	13877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662743	110657461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUSG00000021270.14_110657906_110662743_1	chr12	-	2328	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	867	-20	-444	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	3473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTGTTAACATTTAAAAC	NA	False	NA	NA	False	AATATA	-21	NA	110662743	110657905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUSG00000021273.12_63383852_63402374_1	chr14	-	1795	7	FSM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	0	1253	0	-1250	multi-exon	FALSE	canonical	3	727	junction_5	64.1242283904194	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	2882	False	NA	-34	True	AATAGA	-13	NA	63402374	63383851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980
ENSMUSG00000021273.12_63383852_63415260_1	chr14	-	1628	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	-18	1250	-14	-1250	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	4293	False	NA	-34	True	AATAGA	-13	NA	63415260	63383851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
ENSMUSG00000021276.11_110839596_110855559_1	chr12	-	1457	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	20	552	-1	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3369	False	NA	-10	True	NA	NA	NA	110855559	110839595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110840082_110855559_1	chr12	-	971	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	20	1038	-1	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTTTGTG	3369	False	NA	6	True	NA	NA	NA	110855559	110840081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_1	chr12	-	1867	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_2	chr12	-	1222	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	211.668815605889	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021302.11_14228263_14237998_1	chr13	-	1150	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	75	3019	0	291	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14237998	14228262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021302.11_14228433_14237998_1	chr13	-	980	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	75	3189	0	121	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGGATGTAGGTTCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	14237998	14228432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021306.12_13533201_13568180_1	chr13	-	2201	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	-31	181	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTTTGTAGAGTTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	13568180	13533200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021306.12_13533707_13568180_1	chr13	-	1695	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	-31	687	0	-506	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTATTTCAGTGGGTA	NA	False	NA	NA	False	AATAAA	-22	NA	13568180	13533706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021306.12_13535496_13568180_1	chr13	-	1310	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	29	2295	0	-2295	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTGTCATTCTTAA	NA	False	NA	-3	True	AATATA	-44	NA	13568180	13535495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021306.12_13535496_13568180_2	chr13	-	1229	8	NNC	ENSMUSG00000021306.12	novel	3634	7	NA	NA	0	-2295	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	69.6806124765134	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTGTCATTCTTAA	NA	False	NA	-3	True	AATATA	-44	NA	13568180	13535495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539682_13539762_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021361.8_41169768_41176062_1	chr13	+	855	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUSG00000021376.12_47178655_47196614_1	chr13	-	977	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196614	47178654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
ENSMUSG00000021376.12_47178655_47196614_2	chr13	-	1000	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	72	1636	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196614	47178654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
ENSMUSG00000021377.16_47238258_47259323_1	chr13	-	2548	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	343	0	-17	0	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259323	47238257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
ENSMUSG00000021392.9_49826139_49832455_1	chr13	+	1030	5	ISM	ENSMUSG00000021392.9	ENSMUST00000021824.8	4242	18	19313	36	2961	0	3prime_fragment	FALSE	canonical	3	121	junction_1	30.9222816105151	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTCCTAATTA	7546	False	NA	7	True	AATAAA	-13	NA	49826138	49832455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_+_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ENSMUSG00000021395.12_51254916_51303258_1	chr13	+	1110	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	3324	0	-3272	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGATTGCTTTCCAGTT	NA	False	NA	NA	False	ATTAAA	-22	NA	51254915	51303258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ENSMUSG00000021417.16_35161733_35178105_1	chr13	-	1684	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	56.5674512702303	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178105	35161732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
ENSMUSG00000021417.16_35161733_35178105_3	chr13	-	1576	10	NIC	ENSMUSG00000021417.16	novel	1414	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	52.8942574306115	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178105	35161732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177812
ENSMUSG00000021417.16_35161733_35178115_1	chr13	-	1510	10	NIC	ENSMUSG00000021417.16	novel	1414	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	51.9781530555072	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178115	35161732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
ENSMUSG00000021418.16_36080687_36090342_1	chr13	-	1148	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	3232	0	0	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGTTTGTTGTC	NA	False	NA	-6	True	CATAAA	-23	NA	36090342	36080686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000021420.14_36301637_36721567_1	chr13	+	1671	7	NIC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	85.194711625129	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301636	36721567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_36301777_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_36301841_36721567_1	chr13	+	1679	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	446	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301840	36721567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_36404312_36721567_1	chr13	+	1061	6	NNC	ENSMUSG00000021420.14	novel	726	5	NA	NA	-11793	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	93.2660710011953	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36404311	36721567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_36404475_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021427.11_38161989_38178133_1	chr13	-	2661	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	6612	0	-6612	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAGTGTTTAACTAAAAA	5906	False	NA	-1	True	ATTAAA	-14	NA	38178133	38161988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38162171_38178133_1	chr13	-	2479	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	6794	0	-6794	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCTGTATAATCTGTTT	5906	False	NA	-43	True	AATATA	-18	NA	38178133	38162170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38163471_38178133_1	chr13	-	1179	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	8094	0	-8094	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGAGCAGTTGTCTT	5906	False	NA	36	True	ATTAAA	-16	NA	38178133	38163470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021428.10_38221221_38245405_1	chr13	+	2484	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	250	4	0	2	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTAGTTTGCATTCTT	4738	False	NA	14	True	AATAAA	-15	NA	38221220	38245405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
ENSMUSG00000021431.16_38388921_38399579_1	chr13	+	1037	6	FSM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	7	-173	0	173	multi-exon	FALSE	canonical	3	20	junction_5	91.8267934755429	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	38388920	38399579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399039
ENSMUSG00000021431.16_38388921_38399579_2	chr13	+	1043	6	NNC	ENSMUSG00000021431.16	novel	871	6	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	98.3959348753799	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	38388920	38399579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399033
ENSMUSG00000021431.16_38388921_38410956_1	chr13	+	1100	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	685	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGCATAGGGGAAAATG	NA	False	NA	-64	True	AATAAA	-21	NA	38388920	38410956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ENSMUSG00000021431.16_38388921_38411028_1	chr13	+	1185	9	NNC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	0	72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	100.421533422867	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAAATTGTACACTACAC	NA	False	NA	8	True	AATAAA	-16	NA	38388920	38411028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395127_38400300_38400490_38401349_38401476_38404663_38404753_38405210_38405370_38410849
ENSMUSG00000021458.18_63387846_63450685_1	chr13	+	1641	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	3	-589	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAGCACTCTGGCCTTG	NA	False	NA	26	True	AATAAA	-26	NA	63387845	63450685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021460.18_52989155_53083545_1	chr13	-	1168	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	152	0	-51	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083545	52989154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021474.10_54225888_54260800_1	chr13	+	1215	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	0	-1561	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	264.208800004845	428	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTCTGGTAGATTTTA	NA	False	NA	NA	False	NA	NA	NA	54225887	54260800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_54225945_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_54225888_54260800_2	chr13	+	1222	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	1561	0	-1561	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTCTGGTAGATTTTA	NA	False	NA	NA	False	NA	NA	NA	54225887	54260800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_54225888_54260800_3	chr13	+	1288	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	0	-1561	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	430	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTCTGGTAGATTTTA	NA	False	NA	NA	False	NA	NA	NA	54225887	54260800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021477.10_64511610_64518120_1	chr13	-	1389	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	582	0	-582	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	4380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	-6	True	AATAAA	-22	NA	64518120	64511609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUSG00000021477.10_64511710_64518173_1	chr13	-	1342	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	-53	682	-53	-682	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	4316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTGCTTAATTCTGAGT	NA	False	NA	-28	True	TATAAA	-21	NA	64518173	64511709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUSG00000021484.9_55493208_55510424_1	chr13	-	2581	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	172	1562	0	1198	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGGCTGATGGTCTCTG	3011	False	NA	1	True	AATAAA	-18	NA	55510424	55493207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021484.9_55494558_55510424_1	chr13	-	1231	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	172	2912	0	-152	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	3011	False	NA	-6	True	ATTAAA	-14	NA	55510424	55494557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021484.9_55494558_55510612_1	chr13	-	1419	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	-16	2912	-16	-152	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	1387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	2823	False	NA	-6	True	ATTAAA	-14	NA	55510612	55494557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021486.8_55469832_55472838_1	chr13	+	878	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1519	247	0	-244	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCTCTGCTGTCTGGGG	5553	False	NA	NA	False	ATTAAA	-13	NA	55469831	55472838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021486.8_55469832_55473085_1	chr13	+	1091	5	NNC	ENSMUSG00000021486.8	novel	2644	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	565.264097568561	2664	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5553	False	NA	18	True	NA	NA	NA	55469831	55473085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472385_55472642
ENSMUSG00000021486.8_55469832_55473085_2	chr13	+	1125	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1519	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	2814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5553	False	NA	18	True	NA	NA	NA	55469831	55473085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021488.9_55357595_55388660_1	chr13	+	913	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55357594	55388660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ENSMUSG00000021494.10_55678223_55684328_1	chr13	-	2062	17	FSM	ENSMUSG00000021494.10	ENSMUST00000021956.9	2205	17	143	0	-5	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTCTCACCCACCTG	NA	False	NA	1	True	ATTAAA	-27	NA	55684328	55678222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ENSMUSG00000021497.11_55862463_55874046_1	chr13	+	1527	5	NNC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	106.534912118047	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTCGCTTGTTTCTGG	NA	False	NA	24	True	AATAAA	-20	NA	55862462	55874046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_55862658_55865610_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUSG00000021500.18_55782840_55826928_1	chr13	+	3535	23	FSM	ENSMUSG00000021500.18	ENSMUST00000172272.8	5676	23	0	2141	0	-2141	multi-exon	FALSE	non_canonical	0	0	junction_19	81.8265778520354	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCACTGACCTGTCCTTT	NA	False	NA	8	True	AATAAA	-17	NA	55782839	55826928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021500.18_55823854_55826928_1	chr13	+	625	4	ISM	ENSMUSG00000021500.18	ENSMUST00000223736.2	5612	24	40990	2141	6277	-2141	3prime_fragment	FALSE	canonical	3	370	junction_3	6.37704215656966	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCACTGACCTGTCCTTT	NA	False	NA	8	True	AATAAA	-17	NA	55823853	55826928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_+_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021518.5_67081512_67146073_1	chr13	+	2414	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	618	392	0	-117	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTTTGTTAGAATGAT	8476	False	NA	29	True	ATTAAA	-15	NA	67081511	67146073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ENSMUSG00000021519.12_67055032_67081105_1	chr13	-	1387	8	NIC	ENSMUSG00000021519.12	novel	784	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	116.048898912379	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTATGTATCAGCAACTA	424	False	NA	NA	False	AATAAA	-18	NA	67081105	67055031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_67055248_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_67060182_67081105_1	chr13	-	1427	8	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	109.238178270405	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	424	False	NA	NA	False	AATAAA	-18	NA	67081105	67060181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065233_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021532.12_68730382_68740401_1	chr13	+	2264	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730381	68740401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_68730382_68740401_2	chr13	+	2598	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730381	68740401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021537.10_81931397_81945038_1	chr13	+	789	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	236	0	3	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGGTGTATGTTATTT	NA	False	NA	24	True	TATAAA	-17	NA	81931396	81945038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021537.10_81931397_81945153_1	chr13	+	904	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	121	0	118	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTTTGGTAAATTT	NA	False	NA	8	True	AATAAA	-19	NA	81931396	81945153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021537.10_81931397_81945274_1	chr13	+	1025	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	0	0	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	AATAAA	-15	NA	81931396	81945274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021546.19_58538956_58550279_1	chr13	-	2796	15	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4802	False	NA	-8	True	AATACA	-15	NA	58550279	58538955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58538956_58550279_2	chr13	-	2736	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4802	False	NA	-8	True	AATACA	-15	NA	58550279	58538955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539053_58549933_1	chr13	-	2622	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5148	False	NA	-23	True	AATAAA	-15	NA	58549933	58539052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539053_58550330_1	chr13	-	2750	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4751	False	NA	-23	True	AATAAA	-15	NA	58550330	58539052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58549384_1	chr13	-	1951	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2561.53390449503	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5697	False	NA	-5	True	AATAAA	-14	NA	58549384	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549348
ENSMUSG00000021546.19_58539764_58549933_1	chr13	-	1911	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	-5	True	AATAAA	-14	NA	58549933	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539764_58549933_2	chr13	-	1971	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2345.6966025086	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	-5	True	AATAAA	-14	NA	58549933	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539764_58550279_1	chr13	-	1916	14	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2590.86606113584	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4802	False	NA	-5	True	AATAAA	-14	NA	58550279	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550330_1	chr13	-	2039	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	-5	True	AATAAA	-14	NA	58550330	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550330_2	chr13	-	1979	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	-5	True	AATAAA	-14	NA	58550330	58539763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021548.11_85337554_85361029_1	chr13	+	1205	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	27	813	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_85337554_85361029_2	chr13	+	1025	9	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	310.456921327259	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021550.7_58529496_58533039_1	chr13	-	1186	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	0	1865	0	-1865	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTGGTGCACGCCTTT	NA	False	NA	-17	True	TATAAA	-19	NA	58533039	58529495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
ENSMUSG00000021555.16_59733208_59747651_1	chr13	+	453	5	ISM	ENSMUSG00000021555.16	ENSMUST00000166923.9	779	10	0	8980	0	47	5prime_fragment	FALSE	canonical	3	670	junction_1	98.3234458305851	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCCTACCTGATTCTT	1309	False	NA	NA	False	AATAAA	-23	NA	59733207	59747651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542
ENSMUSG00000021555.16_59733208_59782609_1	chr13	+	2567	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	99	1127	0	43	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGCCCTGTGGAGAAC	1309	False	NA	64	True	AATAAA	-26	NA	59733207	59782609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ENSMUSG00000021556.13_59782810_59823599_1	chr13	-	3558	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	26	370	-5	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-22	NA	59823599	59782809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ENSMUSG00000021556.13_59784998_59823599_1	chr13	-	1370	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	26	2558	-5	-2188	multi-exon	FALSE	canonical	3	421	junction_9	46.3947102135844	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACCATCTCAGACAGTT	NA	False	NA	-16	True	AAGAAA	-7	NA	59823599	59784997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ENSMUSG00000021569.11_74060577_74085903_1	chr13	-	2288	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	0	1111	0	0	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74085903	74060576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
ENSMUSG00000021572.10_74185751_74210393_1	chr13	-	2244	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210393	74185750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021572.10_74185751_74210393_2	chr13	-	2307	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210393	74185750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021576.7_74451636_74465403_1	chr13	-	1080	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	296	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTAGTTTTGGCTGGT	NA	False	NA	-7	True	AATAAA	-17	NA	74465403	74451635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUSG00000021577.15_74470851_74498358_1	chr13	-	2381	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	41	478	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTGTGAAGTAGGGCA	NA	False	NA	20	True	NA	NA	NA	74498358	74470850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ENSMUSG00000021578.18_74498436_74505551_1	chr13	+	1200	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	8	8351	0	384	multi-exon	FALSE	canonical	3	416	junction_2	9.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTCAGTTTTTACCT	4358	False	NA	NA	False	AATACA	-20	NA	74498435	74505551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021578.18_74498484_74505796_1	chr13	+	1397	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	56	8106	0	629	multi-exon	FALSE	canonical	3	416	junction_2	9.5	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGCTTTTTTTTTTT	4406	False	NA	31	True	TTTAAA	-6	NA	74498483	74505796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021578.18_74498484_74505959_1	chr13	+	1560	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	56	7943	0	792	multi-exon	FALSE	canonical	3	416	junction_2	9.5	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGGGCATGGTATTACTT	4406	False	NA	NA	False	NA	NA	NA	74498483	74505959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021585.11_74842374_74918725_1	chr13	-	2748	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	130	1887	-16	0	multi-exon	FALSE	canonical	3	102	junction_28	16.6207701385947	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCTGCCTGAACTCTAC	NA	False	NA	NA	False	AATAAA	-45	NA	74918725	74842373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
ENSMUSG00000021607.10_73476632_73480297_1	chr13	+	1159	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	-442	0	0	multi-exon	FALSE	canonical	3	17	junction_1	303	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	9283	False	NA	13	True	ATTAAA	-26	NA	73476631	73480297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_73476740_73478978_73479211_73479478
ENSMUSG00000021607.10_73479145_73479878_1	chr13	+	466	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	38	419	0	23	multi-exon	FALSE	canonical	3	623	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGGCCTTAGGGCTTT	NA	False	NA	20	True	AATAAA	-20	NA	73479144	73479878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_73479211_73479478
ENSMUSG00000021619.7_91083988_91365974_1	chr13	-	1162	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6104	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4984	False	NA	NA	False	ATTAAA	-37	NA	91365974	91083987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
ENSMUSG00000021621.16_91944653_91955824_1	chr13	-	1471	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	56.3427013906859	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91955824	91944652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUSG00000021635.15_100753672_100787510_1	chr13	-	2662	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	45	-315	0	0	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787510	100753671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ENSMUSG00000021639.18_100596277_100629098_1	chr13	-	2002	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-11	449	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTTCTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100629098	100596276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021639.18_100605202_100629098_1	chr13	-	1571	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-29	114	-11	114	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTATTTTGAGCCA	NA	False	NA	-10	True	ATTAAA	-16	NA	100629098	100605201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021639.18_100605316_100628846_1	chr13	-	1419	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	0	8590	0	0	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628846	100605315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
ENSMUSG00000021639.18_100605316_100629098_1	chr13	-	1457	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-29	228	-11	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100629098	100605315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021660.15_98446404_98453278_1	chr13	-	894	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	197	0	197	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453278	98446403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ENSMUSG00000021660.15_98446450_98453488_1	chr13	-	817	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	26	45	-13	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	9947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATAAAGTTTGGAAAG	NA	False	NA	-62	True	AATAAA	-13	NA	98453488	98446449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000021661.17_98399647_98410426_1	chr13	+	1858	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	-103	0	0	0	multi-exon	TRUE	canonical	3	142	junction_1	23.3559414282533	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUSG00000021671.10_96524802_96551377_1	chr13	+	2315	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	0	2868	0	-2317	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGCCTGCCAGTGATT	NA	False	NA	NA	False	ATTAAA	-29	NA	96524801	96551377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
ENSMUSG00000021692.10_107083663_107095294_1	chr13	+	1081	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	-4	974	0	-974	multi-exon	TRUE	canonical	3	504	junction_4	50.5395680025492	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCATTTAAATTATTTAAT	NA	False	NA	NA	False	AATACA	-21	NA	107083662	107095294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_1	chr13	+	1151	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	0	-840	combination_of_known_splicesites	FALSE	canonical	1	7	junction_9	185.647757864188	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_2	chr13	+	2057	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	-23	1304	0	-840	multi-exon	FALSE	canonical	3	551	junction_4	41.347966346456	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_3	chr13	+	1290	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	0	-840	intron_retention	FALSE	canonical	3	551	junction_5	39.2372272210971	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_4	chr13	+	1215	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	-4	840	0	-840	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021694.19_108295272_108331047_1	chr13	+	1537	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	7	851	0	-464	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295271	108331047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_108295272_108331047_2	chr13	+	1639	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	472	0	-464	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295271	108331047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021696.10_108350944_108419238_1	chr13	+	1028	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	6	2979	0	-1369	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGAGACTGATATCTTG	NA	False	NA	3	True	AATACA	-18	NA	108350943	108419238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021696.10_108350944_108420000_1	chr13	+	1790	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	6	2217	0	-607	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTTGGATTCAATGAGG	NA	False	NA	7	True	AATAAA	-14	NA	108350943	108420000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021707.6_92491654_92521391_1	chr13	+	757	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	4170	420	-4170	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTATGAGTAATTATTTC	NA	False	NA	27	True	NA	NA	NA	92491653	92521391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021707.6_92491654_92521826_1	chr13	+	1192	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	3735	420	-3735	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	11	True	TATAAA	-16	NA	92491653	92521826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021707.6_92491654_92522192_1	chr13	+	1558	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	3369	420	-3369	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	14	True	AATAAA	-17	NA	92491653	92522192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021710.12_104161203_104246094_1	chr13	-	2496	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	28	1638	0	-110	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCATATGACTGTAATTT	NA	False	NA	-15	True	TATAAA	-37	NA	104246094	104161202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ENSMUSG00000021711.18_104280462_104314923_1	chr13	-	1679	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	54	1805	-8	0	multi-exon	FALSE	canonical	3	331	junction_5	157.730704704606	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314923	104280461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_104280462_104314923_2	chr13	-	1694	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	10	1798	-8	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314923	104280461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021712.16_104315347_104339358_1	chr13	+	3207	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	42	167	0	-167	multi-exon	FALSE	canonical	3	141	junction_1	34.1	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAGACTTTGAATTGT	NA	False	NA	3	True	AATAAA	-14	NA	104315346	104339358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_104315347_104339884_1	chr13	+	3733	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	42	-359	0	4	multi-exon	FALSE	canonical	3	141	junction_1	34.1	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTGTTATTCTAAAAAT	NA	False	NA	6	True	AATAAA	-16	NA	104315346	104339884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021714.16_104365474_104386125_1	chr13	+	985	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365473	104386125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021714.16_104365474_104386125_2	chr13	+	1067	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	135.125547474365	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365473	104386125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_104365593_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021714.16_104365474_104386125_3	chr13	+	998	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	355	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365473	104386125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021715.13_104767839_104797895_1	chr13	-	593	3	ISM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	155566	191	131228	-191	3prime_fragment	FALSE	canonical	3	752	junction_1	56.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104797895	104767838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_104768247_104794536_104794641_104797814
ENSMUSG00000021715.13_104767839_104953461_1	chr13	-	1889	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	0	-191	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_5	188.393143005155	571	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953461	104767838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929168_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021715.13_104767839_104953461_2	chr13	-	1880	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	191	0	-191	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953461	104767838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021715.13_104767839_104953650_1	chr13	-	1781	15	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	0	-191	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_14	171.280054714077	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953650	104767838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194_104953331_104953618
ENSMUSG00000021716.15_104953685_104974002_1	chr13	+	585	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	1780	0	-866	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAGGAAAAGCGTTC	NA	False	NA	NA	False	AAAAAG	-13	NA	104953684	104974002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021716.15_104953685_104974871_1	chr13	+	1454	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	911	0	3	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTGTATATGATGCCTA	NA	False	NA	NA	False	ATTAAA	-17	NA	104953684	104974871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021728.9_117357252_117410637_1	chr13	+	2165	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	444	314	0	-314	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCCTTGTGCTGCTGGCT	NA	False	NA	NA	False	AATAAA	-26	NA	117357251	117410637	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000021728.9_117357280_117409795_1	chr13	+	1295	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	472	1156	0	-1156	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTCTGTGAGCT	NA	False	NA	2	True	ATTAAA	-16	NA	117357279	117409795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000021728.9_117357280_117409947_1	chr13	+	1447	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	472	1004	0	-1004	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTAAGTGTTTGCCT	NA	False	NA	16	True	ATTAAA	-17	NA	117357279	117409947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000021748.10_14296836_14303545_1	chr14	+	1193	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	88	232	0	18	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGTGTCTGAACTGTAAG	NA	False	NA	5	True	CATAAA	-19	NA	14296835	14303545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021759.15_112937326_113004305_1	chr13	+	1475	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	123	0	-123	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTCCCACCTGTACATT	9637	False	NA	NA	False	ATTAAA	-24	NA	112937325	113004305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004428_1	chr13	+	1595	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	-71	-252	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004428_2	chr13	+	1443	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021764.9_114424331_114524616_1	chr13	-	1520	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	178	0	0	0	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	2119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGCTGTTATGTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	114524616	114424330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_114425184_114524616_1	chr13	-	593	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	-30	153	0	0	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524616	114425183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_114425184_114524616_2	chr13	-	667	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	178	853	0	0	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	2086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524616	114425183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021771.15_21881634_21895587_1	chr14	+	1297	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	360	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	2148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	22	True	AATAGA	-18	NA	21881633	21895587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021771.15_21881634_21895765_1	chr14	+	1475	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	182	0	178	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	2558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGGCTCACGTATGTGC	NA	False	NA	16	True	AATAAA	-15	NA	21881633	21895765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021771.15_21881634_21895947_1	chr14	+	1657	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	2751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	12	True	AATAAA	-22	NA	21881633	21895947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021772.16_4189259_4198560_1	chr14	-	1032	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	0	3566	0	0	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198560	4189258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
ENSMUSG00000021773.12_21897247_21898978_1	chr14	-	923	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	67	1324	-16	0	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898978	21897246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021786.14_6226432_6229217_1	chr14	+	1575	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	0	1859	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACTTGTTATTTTATAG	NA	False	NA	NA	False	NA	NA	NA	6226431	6229217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_6226474_6226964_6227973_6228692
ENSMUSG00000021806.5_19860134_19861855_1	chr14	+	753	3	ISM	ENSMUSG00000021806.5	ENSMUST00000224263.2	4105	19	41829	0	4830	0	3prime_fragment	FALSE	canonical	3	1731	junction_2	5	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19860133	19861855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_19860172_19861021_19861135_19861253
ENSMUSG00000021806.5_19861021_19861855_1	chr14	+	716	2	ISM	ENSMUSG00000021806.5	ENSMUST00000224263.2	4105	19	42716	0	5717	0	3prime_fragment	FALSE	canonical	3	1731	junction_1	0	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19861020	19861855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_19861135_19861253
ENSMUSG00000021807.7_19861985_19873892_1	chr14	-	1005	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_4	945.86932263934	1908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867119_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_2	chr14	-	996	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	566	0	-566	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	1909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021811.8_20434928_20438944_1	chr14	-	1375	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	34	222	0	-222	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	-16	True	AATAAA	-15	NA	20438944	20434927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
ENSMUSG00000021811.8_20435061_20438944_1	chr14	-	1242	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	34	355	0	237	multi-exon	FALSE	canonical	3	896	junction_2	62.1711347813437	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTACACGGATCTTCTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	20438944	20435060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
ENSMUSG00000021814.18_20505345_20530019_1	chr14	-	2652	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	182	17	-10	0	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTGACCTAGAGTA	8160	False	NA	-1	True	AATAAA	-24	NA	20530019	20505344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUSG00000021814.18_20506236_20529976_1	chr14	-	1833	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	3	891	0	361	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8203	False	NA	-18	True	AATAAA	-19	NA	20529976	20506235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
ENSMUSG00000021814.18_20506236_20530019_1	chr14	-	1761	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	182	908	-10	361	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8160	False	NA	-18	True	AATAAA	-19	NA	20530019	20506235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUSG00000021814.18_20506236_20530189_1	chr14	-	1931	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	12	908	0	361	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	7990	False	NA	-18	True	AATAAA	-19	NA	20530189	20506235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUSG00000021824.14_21084875_21102274_1	chr14	-	3123	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	244	3365	-11	1207	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102274	21084874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021824.14_21085818_21102274_2	chr14	-	2180	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	244	4308	-11	264	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102274	21085817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021832.9_45567285_45586284_1	chr14	+	1316	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	40	878	0	-878	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	1238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	26	True	AATAAA	-19	NA	45567284	45586284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021832.9_45567285_45586531_1	chr14	+	1563	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	40	631	0	-631	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	1656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTCTTGTCTTTTCTAA	NA	False	NA	31	True	AATAAA	-23	NA	45567284	45586531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021840.18_47535723_47557074_1	chr14	+	1067	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	-3	3478	0	-3478	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTGTGCTTAATGTGA	9627	False	NA	16	True	GATAAA	-16	NA	47535722	47557074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
ENSMUSG00000021877.13_26359229_26377996_1	chr14	+	1748	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	417	0	27	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1686	False	NA	5	True	AATAAA	-15	NA	26359228	26377996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021877.13_26359398_26377996_1	chr14	+	1579	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	169	417	0	27	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1855	False	NA	5	True	AATAAA	-15	NA	26359397	26377996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021884.19_31329810_31362921_1	chr14	-	1990	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	654	0	116	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6945	False	NA	NA	False	AGTAAA	-32	NA	31362921	31329809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021884.19_31329810_31363219_1	chr14	-	2288	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	-298	654	-5	116	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6647	False	NA	NA	False	AGTAAA	-32	NA	31363219	31329809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021891.9_31200749_31216981_1	chr14	-	1958	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	16	1972	-3	793	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTGAATGTGTTTGTTT	NA	False	NA	2	True	NA	NA	NA	31216981	31200748	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_31200954_31216981_1	chr14	-	1753	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	16	2177	-3	588	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATTGTAAGTCCTGAAA	NA	False	NA	-1	True	AATAAA	-29	NA	31216981	31200953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021900.11_31363014_31390145_1	chr14	+	1933	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	391	0	-391	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCAGAATACTGGCTGGG	NA	False	NA	6	True	AATAAA	-22	NA	31363013	31390145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
ENSMUSG00000021905.15_31804833_31807566_1	chr14	-	646	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	0	2307	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807566	31804832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31805204_31806863_31806939_31807366
ENSMUSG00000021905.15_31804833_31807566_2	chr14	-	571	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	120	118	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807566	31804832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31805204_31807366
ENSMUSG00000021906.15_31807834_31825160_1	chr14	+	1913	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	464	-1	0	1	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTAATGTTTCAGT	NA	False	NA	21	True	AATACA	-20	NA	31807833	31825160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ENSMUSG00000021911.17_31984668_32019177_1	chr14	+	1575	6	ISM	ENSMUSG00000021911.17	ENSMUST00000170129.8	2786	15	60679	0	-12996	0	3prime_fragment	FALSE	canonical	1	134	junction_3	120.054321038437	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGCCACTTATATTT	NA	False	NA	15	True	AATAAA	-28	NA	31984667	32019177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021928.10_61578440_61597904_1	chr14	-	859	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	-16	9249	-16	-1226	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGTGTGACTTAGTAG	NA	False	NA	-5	True	ATTAAA	-18	NA	61597904	61578439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ENSMUSG00000021930.15_61771328_61794207_1	chr14	-	1988	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	128	1886	0	426	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATTTTCATGGTGTC	NA	False	NA	1	True	AATAAA	-22	NA	61794207	61771327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021930.15_61772296_61794207_1	chr14	-	1020	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	128	2854	0	-542	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAATTGAGTGATTATT	NA	False	NA	-6	True	TATAAA	-43	NA	61794207	61772295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021932.14_62569517_62609960_1	chr14	+	1013	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	481	0	-481	multi-exon	TRUE	canonical	3	538	junction_2	112.951139879153	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_62569517_62609960_2	chr14	+	905	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	0	-481	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_62569517_62610445_1	chr14	+	1390	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	9	True	AATAAA	-21	NA	62569516	62610445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021939.9_63359911_63380500_1	chr14	+	1871	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	2872	0	1188	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGTTGTAGTTA	NA	False	NA	-58	True	AATGAA	-20	NA	63359910	63380500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ENSMUSG00000021939.9_63359963_63380584_1	chr14	+	1903	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	52	2788	0	1272	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	26	True	AATAAA	-21	NA	63359962	63380584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ENSMUSG00000021951.8_57787054_57809026_1	chr14	-	674	4	NIC	ENSMUSG00000021951.8	novel	880	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	119.268138615847	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809026	57787053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_57787337_57787818_57788100_57795490_57795574_57808999
ENSMUSG00000021953.15_63729796_63746217_1	chr14	-	1557	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	0	-12	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	7026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746217	63729795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021953.15_63729907_63746217_1	chr14	-	1446	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	111	-12	-111	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	6615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	63746217	63729906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021957.8_30271138_30295581_1	chr14	+	2077	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	50	1096	0	0	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	1760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30271137	30295581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUSG00000021957.8_30293134_30295581_1	chr14	+	480	3	ISM	ENSMUSG00000021957.8	ENSMUST00000225039.2	1401	8	3178	0	1472	0	3prime_fragment	FALSE	canonical	3	2212	junction_1	58	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30293133	30295581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_30293203_30294164_30294288_30295293
ENSMUSG00000021963.18_58035675_58039610_1	chr14	+	602	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	38	4485	0	6	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCCATTAAGCCTTTAA	NA	False	NA	NA	False	AATAAA	-27	NA	58035674	58039610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
ENSMUSG00000021963.18_58035675_58039784_1	chr14	+	776	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	38	4311	0	0	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	2253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCCAGGTGTAAAAGTT	NA	False	NA	-4	True	TATAAA	-28	NA	58035674	58039784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
ENSMUSG00000021963.18_58035675_58040929_1	chr14	+	1860	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	0	1137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1278.09944350978	2370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGAGTGACTGCCTATC	NA	False	NA	NA	False	NA	NA	NA	58035674	58040929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378_58040736_58040796
ENSMUSG00000021967.5_58063691_58064407_1	chr14	+	522	2	NNC	ENSMUSG00000021967.5	novel	2877	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	155	junction_1	0	606	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	27	True	ATTAAA	-19	NA	58063690	58064407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_58063771_58063965
ENSMUSG00000021967.5_58063691_58064407_2	chr14	+	531	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	0	2346	0	2	multi-exon	FALSE	canonical	3	956	junction_1	0	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	27	True	ATTAAA	-19	NA	58063690	58064407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_58063780_58063965
ENSMUSG00000021969.9_58072493_58127733_2	chr14	-	2853	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	2333	0	656	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127733	58072492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58073567_58127733_1	chr14	-	1779	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	3407	0	144	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACACTCAAAGAAGGATTC	NA	False	NA	NA	False	AATAAA	-26	NA	58127733	58073566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58073711_58127733_1	chr14	-	1635	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	3551	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGATGCCCAAATCA	NA	False	NA	NA	False	AAAAAG	-38	NA	58127733	58073710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021975.10_65187762_65277281_1	chr14	+	2406	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	268	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCAGTTCTATTGCACT	NA	False	NA	17	True	AATAAA	-17	NA	65187761	65277281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUSG00000021981.11_59678430_59784769_1	chr14	+	1454	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	1583	0	-1583	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACCTAGAATAATATATT	NA	False	NA	-23	True	TATAAA	-22	NA	59678429	59784769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUSG00000021996.17_74969797_74987288_1	chr14	+	1011	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	60	917	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	1233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969796	74987288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUSG00000022008.5_76327894_76348235_1	chr14	-	1206	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-35	4218	-35	-4218	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTGCACAAATACGTCT	NA	False	NA	-15	True	AATATA	-17	NA	76348235	76327893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ENSMUSG00000022008.5_76328008_76348235_1	chr14	-	1092	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-35	4332	-35	-4332	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGGTTTTCACATGGCA	NA	False	NA	NA	False	AATAAA	-19	NA	76348235	76328007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ENSMUSG00000022009.2_76348331_76372525_1	chr14	+	1680	10	FSM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	0	2294	0	-2294	multi-exon	FALSE	canonical	3	441	junction_7	36.4295362461713	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATAGTGTGTCTGTGTCA	NA	False	NA	23	True	AATAAA	-19	NA	76348330	76372525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
ENSMUSG00000022010.20_76725199_76745202_1	chr14	+	1561	3	FSM	ENSMUSG00000022010.20	ENSMUST00000142683.8	797	3	0	-764	0	0	multi-exon	FALSE	canonical	3	75	junction_1	1130	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACGTGTTTCTATATGA	3103	False	NA	28	True	AATAAA	-18	NA	76725198	76745202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76725365_76742688_76742738_76743856
ENSMUSG00000022010.20_76742149_76745202_1	chr14	+	1528	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	231	3	179	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACGTGTTTCTATATGA	6770	False	NA	28	True	AATAAA	-18	NA	76742148	76745202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76742282_76742688_76742738_76743856
ENSMUSG00000022013.5_78063655_78112366_1	chr14	-	659	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	0	5534	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
ENSMUSG00000022013.5_78063655_78112565_1	chr14	-	858	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	-199	5534	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112565	78063654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
ENSMUSG00000022020.16_79573076_79628166_1	chr14	-	2804	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	52	10367	-34	0	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGGGGTTTTTTGTTTGT	NA	False	NA	-10	True	AATAAA	-11	NA	79628166	79573075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ENSMUSG00000022023.7_79698390_79718452_1	chr14	-	2183	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	508	1013	-50	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACCATAAAGTAAATAT	NA	False	NA	NA	False	NA	NA	NA	79718452	79698389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022023.7_79699092_79718452_1	chr14	-	1481	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	508	1715	-50	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCTATGTATCTGTTA	NA	False	NA	91	True	NA	NA	NA	79718452	79699091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022024.11_79825131_79866508_1	chr14	+	1264	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	0	6128	0	91	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTTAGAAATGATTTT	NA	False	NA	19	True	ATTAAA	-15	NA	79825130	79866508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866417_1	chr14	+	1051	12	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	532.160061051666	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79825248	79866417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840354_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866417_2	chr14	+	1055	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	118	6219	0	0	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79825248	79866417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79868232_1	chr14	+	2870	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	118	4404	0	1815	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAGAGTTTTCATATC	NA	False	NA	27	True	AATAAA	-20	NA	79825248	79868232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022033.10_66043557_66055271_1	chr14	+	1449	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	271	0	-124	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043556	66055271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUSG00000022033.10_66043681_66055271_1	chr14	+	1493	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043680	66055271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUSG00000022051.16_67224601_67246305_1	chr14	-	1304	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	21	1913	0	121	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGAGCCGCTCTTTTC	NA	False	NA	-5	True	AATAAA	-16	NA	67246305	67224600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022051.16_67224722_67246305_1	chr14	-	1183	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	21	2034	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCTTCCCTAAGCTTGA	NA	False	NA	NA	False	AAAAAG	-37	NA	67246305	67224721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022052.10_67253123_67309903_1	chr14	-	2402	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	-10	1618	-10	0	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309903	67253122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
ENSMUSG00000022052.10_67253123_67309903_2	chr14	-	2381	11	NNC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	285	junction_10	142.73475400196	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309903	67253122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538_67309797_67309817
ENSMUSG00000022055.8_68321312_68325339_1	chr14	+	2175	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	1205	0	-1205	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCTGTGGTTTTTAC	NA	False	NA	14	True	AATAAA	-28	NA	68321311	68325339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
ENSMUSG00000022070.8_99283890_99285348_1	chr14	+	839	2	FSM	ENSMUSG00000022070.8	ENSMUST00000226823.2	1071	2	232	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	AATAAA	-44	NA	99283889	99285348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_99284117_99284736
ENSMUSG00000022089.10_70337587_70375410_1	chr14	+	1489	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	33	245	0	-245	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGTGTACTTTAACTGA	NA	False	NA	NA	False	AGTAAA	-15	NA	70337586	70375410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
ENSMUSG00000022099.18_70841110_70864498_1	chr14	-	2699	14	NNC	ENSMUSG00000022099.18	novel	2643	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	54.765773443168	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864498	70841109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_70842295_70842407_70842489_70843120_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ENSMUSG00000022108.9_73599851_73622673_1	chr14	-	1555	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	56	185	-35	-185	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATGAGACTGTGCGTTG	NA	False	NA	-7	True	TATAAA	-14	NA	73622673	73599850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUSG00000022108.9_73600325_73622729_1	chr14	-	1137	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	659	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCTTTCTTTTTTCTA	NA	False	NA	-19	True	ATTAAA	-25	NA	73622729	73600324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUSG00000022109.7_73747465_73756289_1	chr14	+	1632	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	-304	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747464	73756289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUSG00000022110.14_73790206_73833087_1	chr14	+	1633	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	495	0	-136	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73790205	73833087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833087_2	chr14	+	1452	10	NIC	ENSMUSG00000022110.14	novel	1545	12	NA	NA	0	-136	combination_of_known_splicesites	FALSE	canonical	3	74	junction_1	503.772435397836	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73790205	73833087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_73790338_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833228_1	chr14	+	1774	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	354	0	5	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTATTCTTTAGTATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	73790205	73833228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833584_1	chr14	+	2130	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	-2	0	2	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	13	True	AATAAA	-16	NA	73790205	73833584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73813126_73833087_1	chr14	+	1145	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	7032	-136	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	572.614982660554	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73813125	73833087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_73813214_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022111.10_101891452_101933561_1	chr14	+	883	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1532.99751720448	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022111.10_101891452_101933561_2	chr14	+	1006	9	NNC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2073.6511278419	1617	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101911571_101911695_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022111.10_101891452_101933561_3	chr14	+	835	7	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2089.29429872066	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022125.8_103307770_103315064_1	chr14	+	2327	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	118	0	118	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307769	103315064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ENSMUSG00000022151.17_5215208_5247817_1	chr15	+	1665	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	167	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215207	5247817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000022159.17_52499216_52516811_1	chr14	-	2715	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	191	0	-15	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52516811	52499215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ENSMUSG00000022174.9_54472936_54491371_1	chr14	-	688	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	190	0	0	0	multi-exon	FALSE	canonical	3	1530	junction_1	8	1243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	False	NA	-11	True	ATTAAA	-24	NA	54491371	54472935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54473171_54480155_54480326_54491088
ENSMUSG00000022185.20_54879618_54891138_1	chr14	-	2289	12	NIC	ENSMUSG00000022185.20	novel	2373	13	NA	NA	0	0	intron_retention	FALSE	canonical	2	44	junction_11	118.32012885626	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3758	False	NA	0	True	AATAAA	-25	NA	54891138	54879617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54891136
ENSMUSG00000022186.15_4056166_4183462_1	chr15	+	1862	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	1364	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACATTTTATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4056165	4183462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022186.15_4056166_4183586_1	chr15	+	1986	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	1240	0	124	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAATTTTCATGTGCATT	NA	False	NA	19	True	ATTAAA	-19	NA	4056165	4183586	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022186.15_4056166_4184826_1	chr15	+	3226	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4056165	4184826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022191.17_12915481_12935376_1	chr15	+	818	7	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	90532	1	36687	0	3prime_fragment	FALSE	canonical	3	681	junction_1	86.6506395437064	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTTTGCTACAGAGTA	NA	False	NA	29	True	ATTAAA	-19	NA	12915480	12935376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ENSMUSG00000022204.10_55253021_55261594_1	chr14	+	1090	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	110	0	110	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261846_1	chr14	+	1342	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	110	-252	110	252	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCGTTTGTTGACCTG	NA	False	NA	NA	False	AATAAA	-16	NA	55253020	55261846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022205.16_11984127_11996098_1	chr15	-	624	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	46	2702	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	6901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	855	False	NA	13	True	ATTAAA	-32	NA	11996098	11984126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ENSMUSG00000022210.8_55716363_55727797_1	chr14	+	1244	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	148	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716362	55727797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUSG00000022223.10_56134740_56137668_1	chr14	-	1299	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227032.2	1023	6	0	-276	0	0	multi-exon	FALSE	canonical	3	22	junction_2	63.0441115410472	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000022241.7_11383791_11399711_1	chr15	-	2561	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	40	1404	-24	300	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	641	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTGAATTATGGCGTT	NA	False	NA	-8	True	AATAAA	-29	NA	11399711	11383790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ENSMUSG00000022244.8_10981842_10995693_1	chr15	+	1558	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	1019	0	600	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTGGTTTTAAGTT	49	False	NA	35	True	AATAAA	-45	NA	10981841	10995693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ENSMUSG00000022247.13_10474865_10486002_1	chr15	-	2608	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.144427207617	1808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10486002	10474864	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_10475136_10475160_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ENSMUSG00000022247.13_10476267_10486002_1	chr15	-	1231	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	31	1402	-7	-1402	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTTTATTCTTTTC	NA	False	NA	-11	True	AATAAA	-14	NA	10486002	10476266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ENSMUSG00000022248.15_10486155_10493763_1	chr15	+	1558	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	55	False	NA	15	True	AATAAA	-20	NA	10486154	10493763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022248.15_10486155_10493763_2	chr15	+	1387	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	55	False	NA	15	True	AATAAA	-20	NA	10486154	10493763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022248.15_10486155_10493763_3	chr15	+	1178	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	359.073653849581	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	55	False	NA	15	True	AATAAA	-20	NA	10486154	10493763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_10486159_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022255.17_34082840_34134501_1	chr15	+	1670	9	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-25	11269	0	11	5prime_fragment	FALSE	canonical	3	477	junction_6	54.812749429307	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAGAAGAAGCAAG	27	False	NA	NA	False	AAAAAG	-41	NA	34082839	34134501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436
ENSMUSG00000022257.5_34238295_34284448_1	chr15	+	1781	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	121	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	111	False	NA	NA	False	ATTAAA	-22	NA	34238294	34284448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUSG00000022283.16_36595905_36609217_1	chr15	-	2808	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1581.86815415914	2627	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603098_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUSG00000022283.16_36596151_36609217_1	chr15	-	2571	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	246	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAACAACAAAAAAATACA	377	False	NA	NA	False	NA	NA	NA	36609217	36596150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUSG00000022283.16_36596268_36609217_1	chr15	-	2454	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	363	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAACATTGCAAA	377	False	NA	NA	False	AAGAAA	-32	NA	36609217	36596267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUSG00000022285.18_36771014_36793812_1	chr15	-	2787	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	269	-934	-49	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	709	False	NA	-39	True	NA	NA	NA	36793812	36771013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUSG00000022285.18_36771813_36793812_1	chr15	-	1988	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	269	-135	-49	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	709	False	NA	NA	False	NA	NA	NA	36793812	36771812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUSG00000022285.18_36771948_36793876_1	chr15	-	1917	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	205	0	-113	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	645	False	NA	-12	True	NA	NA	NA	36793876	36771947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUSG00000022285.18_36771948_36794485_1	chr15	-	2057	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	297	934	290	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	-3	True	NA	-12	True	NA	NA	NA	36794485	36771947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
ENSMUSG00000022285.18_36771948_36794508_1	chr15	-	1883	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	267	135	267	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	13	True	NA	-12	True	NA	NA	NA	36794508	36771947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
ENSMUSG00000022292.17_37929260_37961199_1	chr15	-	989	8	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	148	5064	-26	-1771	5prime_fragment	FALSE	canonical	3	32	junction_3	9.17850194526229	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTAGTGGTTTTAGTT	7256	False	NA	NA	False	AATAAA	-14	NA	37961199	37929259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000022295.9_38662188_38691971_1	chr15	+	1341	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	11	719	0	-716	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCCTTGTGTTGGTGT	195	False	NA	14	True	AGTAAA	-20	NA	38662187	38691971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUSG00000022295.9_38662188_38692442_1	chr15	+	1812	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	11	248	0	-245	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTGTGACTTGAG	195	False	NA	6	True	AATAAA	-16	NA	38662187	38692442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUSG00000022299.10_38958177_38976079_1	chr15	-	2322	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	32	3551	-11	186	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTGCTATAATATCC	NA	False	NA	NA	False	AATAAA	-31	NA	38976079	38958176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ENSMUSG00000022304.14_39646093_39648265_1	chr15	-	714	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72601	0	8382	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648265	39646092	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_39646506_39647964
ENSMUSG00000022312.12_51649954_51728879_1	chr15	-	1250	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_6	605.147173868321	2890	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728879	51649953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662751_51705863_51706021_51728721
ENSMUSG00000022313.11_51740874_51746080_1	chr15	+	942	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	49	1930	0	0	multi-exon	FALSE	canonical	3	321	junction_1	13	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCATCTTCAGTTGTTG	NA	False	NA	22	True	AGTAAA	-19	NA	51740873	51746080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_51741107_51744411_51744587_51745546
ENSMUSG00000022314.11_51826000_51833395_1	chr15	-	2278	6	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	21748	364	21511	-364	3prime_fragment	FALSE	canonical	3	690	junction_2	41.1757210015805	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	-21	True	AATAAA	-20	NA	51833395	51825999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316
ENSMUSG00000022314.11_51826000_51855143_1	chr15	-	3592	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	364	0	-364	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	-21	True	AATAAA	-20	NA	51855143	51825999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
ENSMUSG00000022336.4_43113454_43146115_1	chr15	-	1716	14	NIC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	986.125998646776	1843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144414_43144625_43145998
ENSMUSG00000022336.4_43113570_43146115_1	chr15	-	1390	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	116	0	0	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	1726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAATAAGTGAAAGACACAG	2663	False	NA	-138	True	ATTAAA	-25	NA	43146115	43113569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ENSMUSG00000022338.9_44291488_44299263_1	chr15	+	675	5	FSM	ENSMUSG00000022338.9	ENSMUST00000227425.2	502	5	-16	-157	0	0	multi-exon	FALSE	canonical	3	90	junction_3	351.373732655132	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297249_44297370_44299007
ENSMUSG00000022338.9_44291488_44299263_2	chr15	+	630	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	-19	2389	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_44291543_44299251_1	chr15	+	563	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	36	2401	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGAATGAGTTTCAAT	9671	False	NA	1	True	AATAAA	-3	NA	44291542	44299251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022339.10_44482711_44504423_1	chr15	+	1317	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	140	488	-114	1	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGTATATCCTTATTT	NA	False	NA	13	True	ATTAAA	-23	NA	44482710	44504423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022359.11_58004804_58022050_1	chr15	+	1211	5	NIC	ENSMUSG00000022359.11	novel	1383	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	21.3131414859471	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2691	False	NA	27	True	AATAAA	-17	NA	58004803	58022050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_58004978_58011729_58011838_58014001_58014053_58016975_58017101_58021297
ENSMUSG00000022359.11_58004804_58022050_2	chr15	+	1203	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	16	-421	0	0	multi-exon	FALSE	canonical	3	22	junction_3	18.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2691	False	NA	27	True	AATAAA	-17	NA	58004803	58022050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
ENSMUSG00000022364.15_57827105_57833458_1	chr15	+	555	2	NIC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5296	1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57827104	57833458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_57827321_57833119
ENSMUSG00000022365.7_57733167_57755862_1	chr15	-	2924	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	-18	269	-18	-269	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTCTGTGTTAAGTTTC	NA	False	NA	-3	True	ATTAAA	-15	NA	57755862	57733166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUSG00000022369.14_55420991_55489819_1	chr15	+	2957	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	187	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420990	55489819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ENSMUSG00000022370.14_55397490_55420709_1	chr15	-	788	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	435	0	-30	0	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420709	55397489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUSG00000022378.15_63802791_63932073_1	chr15	-	1779	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	119	-2	106	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	False	NA	-4	True	AATAAA	-22	NA	63932073	63802790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
ENSMUSG00000022391.17_81588454_81614072_1	chr15	-	2901	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	132	0	9	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614072	81588453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ENSMUSG00000022400.10_81350545_81359462_1	chr15	+	519	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	48	1108	0	-125	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	2941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350544	81359462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_81350545_81359924_1	chr15	+	981	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	48	646	0	151	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	3047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTTGGACAGTTTGC	NA	False	NA	12	True	AATAAA	-25	NA	81350544	81359924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_81350842_81359462_1	chr15	+	526	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	125	0	-125	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350841	81359462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022403.16_81247870_81283884_1	chr15	-	2986	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	360	0	-89	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	2056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81283884	81247869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022403.16_81248927_81283884_1	chr15	-	1929	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	360	1057	-89	724	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	1867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGCTTTCTGTTTTTGTC	NA	False	NA	1	True	AATAAA	-31	NA	81283884	81248926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022403.16_81249245_81283884_1	chr15	-	1611	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	360	1375	-89	406	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	1665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	-30	True	AATAAA	-25	NA	81283884	81249244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022407.11_80832705_80853014_1	chr15	+	1564	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	2133	0	58	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTTCTGCGGCACT	NA	False	NA	19	True	NA	NA	NA	80832704	80853014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022407.11_80832705_80853335_1	chr15	+	1885	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	1812	0	15	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80832704	80853335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022407.11_80832705_80853505_1	chr15	+	2055	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	1642	0	185	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTGTTTTATATTT	NA	False	NA	3	True	NA	NA	NA	80832704	80853505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022415.13_79975545_79998205_1	chr15	+	1372	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	10	-563	0	563	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTCATTCATTCATTCA	NA	False	NA	8	True	NA	NA	NA	79975544	79998205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUSG00000022419.17_54975820_55116191_1	chr15	+	1964	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	107	6476	0	-1407	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGGTTTTACCAATAT	NA	False	NA	NA	False	NA	NA	NA	54975819	55116191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
ENSMUSG00000022427.5_79555082_79556554_1	chr15	+	502	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	1047	0	-212	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTGGAACTTTTTATT	8198	False	NA	9	True	NA	NA	NA	79555081	79556554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022427.5_79555082_79557068_1	chr15	+	1016	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	533	0	187	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTATTGCTGTGTTTGTG	8198	False	NA	21	True	ATTAAA	-17	NA	79555081	79557068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022437.8_84076442_84098505_1	chr15	+	1666	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	0	2963	0	-2963	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	3238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	28	True	AATAAA	-14	NA	84076441	84098505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ENSMUSG00000022437.8_84076442_84098505_2	chr15	+	1661	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	0	-2963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	482.592768918314	3236	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	28	True	AATAAA	-14	NA	84076441	84098505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095242_84095380_84098326
ENSMUSG00000022438.7_84116267_84197729_1	chr15	+	1601	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	23	2160	0	-2160	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCACTCCTGAGTCTC	NA	False	NA	12	True	AGTAAA	-15	NA	84116266	84197729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
ENSMUSG00000022451.13_94477547_94487760_1	chr15	-	1310	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	1715	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAGAAGACTCATGATTT	NA	False	NA	83	True	TTTAAA	-7	NA	94487760	94477546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022451.13_94477674_94487760_1	chr15	-	1183	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	1842	0	-127	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTAAAGTTTCCAGCT	NA	False	NA	-44	True	ATTAAA	-13	NA	94487760	94477673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022452.17_82230278_82233266_1	chr15	+	550	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	982	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	36	True	AATAAA	-18	NA	82230277	82233266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_82230471_82232100_82232242_82233050
ENSMUSG00000022453.9_82213733_82223017_1	chr15	-	1731	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1354	False	NA	0	True	AATAAA	-31	NA	82223017	82213732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022464.15_96894649_96953837_1	chr15	-	1987	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	1945	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	-12	True	ATTAAA	-23	NA	96953837	96894648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ENSMUSG00000022476.9_81800284_81810441_1	chr15	-	1488	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	1054	0	318	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTCCCCTTTTCATTA	428	False	NA	-2	True	AATAAA	-17	NA	81810441	81800283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
ENSMUSG00000022477.14_81756685_81799334_1	chr15	+	2743	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	624	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81756684	81799334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ENSMUSG00000022500.16_10777351_10810943_1	chr16	-	1981	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	42	212	-8	-212	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGTGTTGTGTTTCCA	NA	False	NA	21	True	AAGAAA	-1	NA	10810943	10777350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_10778233_10810943_1	chr16	-	1099	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	42	1094	-8	455	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGGCCTGTGAAGGGT	NA	False	NA	-4	True	AATAAA	-25	NA	10810943	10778232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_10791470_10810943_1	chr16	-	386	3	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	-8	-7275	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	2	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTCAAGGAATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	10810943	10791469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_10791638_10793290_10793475_10810909
ENSMUSG00000022503.11_10229813_10241395_1	chr16	+	1223	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	1	897	0	185	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTAGGGCCTGCTTCCT	NA	False	NA	17	True	AATAAA	-19	NA	10229812	10241395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUSG00000022516.11_4756986_4758883_1	chr16	+	1257	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	361	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	18	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGCTTCTGAGTGCCA	105	False	NA	12	True	AATAAA	-18	NA	4756985	4758883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757503_4758059
ENSMUSG00000022538.21_30380189_30406381_1	chr16	-	2279	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	136.800506937017	323	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGATATTCTTATTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	30406381	30380188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386658_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ENSMUSG00000022538.21_30380189_30406381_2	chr16	-	2270	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	136.800506937017	324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGATATTCTTATTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	30406381	30380188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386658_30387931_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ENSMUSG00000022544.15_5062743_5073820_1	chr16	-	1416	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	27	727	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTGTCCTGTCAGAC	NA	False	NA	-5	True	AATAAA	-17	NA	5073820	5062742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_5062955_5073820_2	chr16	-	1204	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	27	939	0	-212	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGAAAAGGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	5073820	5062954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022548.15_31115940_31133412_1	chr16	-	930	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	214	930	0	0	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8710	False	NA	-4	True	AATAAA	-12	NA	31133412	31115939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
ENSMUSG00000022551.9_76227733_76230135_1	chr15	+	1207	7	NIC	ENSMUSG00000022551.9	novel	1791	6	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	92	junction_1	1700.84897102071	2569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAGCTGGTCAATG	NA	False	NA	28	True	AATAAA	-18	NA	76227732	76230135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_76227893_76228479_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022551.9_76227733_76230135_2	chr15	+	1185	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	10	325	0	3	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	2571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAGCTGGTCAATG	NA	False	NA	28	True	AATAAA	-18	NA	76227732	76230135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022555.13_76386215_76396037_1	chr15	-	1774	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	114	0	-11	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396037	76386214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
ENSMUSG00000022557.12_76337342_76361477_1	chr15	-	2338	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	153	0	-153	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGATTCAGCCTCCAGC	NA	False	NA	-7	True	AATAGA	-18	NA	76361477	76337341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ENSMUSG00000022583.13_75140270_75144085_1	chr15	+	848	4	NNC	ENSMUSG00000022583.13	novel	877	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3.74165738677394	68	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGATCTCAGTTTTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	75140269	75144085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_75140299_75140550_75140649_75141628_75141746_75143481
ENSMUSG00000022587.15_74827502_74831180_1	chr15	+	707	4	NNC	ENSMUSG00000022587.15	novel	1122	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.10511950161	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830759
ENSMUSG00000022617.16_89310563_89313633_1	chr15	-	1259	11	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_8	106.87300875338	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1649	False	NA	NA	False	AATAAA	-30	NA	89313633	89310562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312762_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022617.16_89310563_89313633_3	chr15	-	1245	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	469	-7	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1649	False	NA	NA	False	AATAAA	-30	NA	89313633	89310562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022635.10_93283994_93296188_1	chr15	-	901	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022635.10_93283994_93296188_2	chr15	-	731	7	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	235.838515844116	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022652.8_48432067_48451274_1	chr16	+	989	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	11	at_least_one_novel_splicesite	FALSE	canonical	3	485	junction_1	244.404064898224	380	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	732	False	NA	22	True	AATAAA	-27	NA	48432066	48451274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_48432067_48451274_2	chr16	+	879	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	11	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	345.998525418587	173	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	732	False	NA	22	True	AATAAA	-27	NA	48432066	48451274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_48432067_48451891_1	chr16	+	1415	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGTATAATGTGCCT	732	False	NA	17	True	ATTAAA	-21	NA	48432066	48451891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022652.8_48432067_48451891_2	chr16	+	1305	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	472.316746871207	255	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGTATAATGTGCCT	732	False	NA	17	True	ATTAAA	-21	NA	48432066	48451891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022658.11_45531593_45544791_1	chr16	-	1060	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	180	0	180	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544791	45531592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
ENSMUSG00000022668.11_44559505_44566726_1	chr16	-	1041	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	2374	0	0	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566726	44559504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
ENSMUSG00000022671.14_15666307_15680804_1	chr16	-	626	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	407	2	-218	0	multi-exon	FALSE	canonical	3	566	junction_1	21	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15680804	15666306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15666594_15680261_15680408_15680611
ENSMUSG00000022671.14_15666307_15681182_1	chr16	-	982	4	NNC	ENSMUSG00000022671.14	novel	758	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	277.245178296916	595	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15681182	15666306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680818
ENSMUSG00000022674.16_15373369_15412362_1	chr16	-	1353	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	26	2828	-8	0	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412362	15373368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
ENSMUSG00000022674.16_15373538_15412362_1	chr16	-	1184	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	26	2997	-8	-169	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	15412362	15373537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
ENSMUSG00000022674.16_15373538_15412362_2	chr16	-	1058	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	9	169	-8	-169	multi-exon	FALSE	canonical	3	117	junction_1	698.5	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	15412362	15373537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15374408_15398922_15399072_15412323
ENSMUSG00000022674.16_15373745_15412362_1	chr16	-	977	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	26	3204	-8	0	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTTGGGGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	15412362	15373744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
ENSMUSG00000022677.16_14117108_14135197_1	chr16	-	1338	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	175.075856575244	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135197	14117107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_14118074_14122317_14122452_14131679_14131878_14135157
ENSMUSG00000022677.16_14117108_14135197_2	chr16	-	1291	4	NNC	ENSMUSG00000022677.16	novel	1414	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	179.58718093326	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135197	14117107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_14118074_14122317_14122405_14131679_14131878_14135157
ENSMUSG00000022679.14_13758559_13765609_3	chr16	+	1424	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	30	1633	0	449	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAGCAAATGAAAATTCT	521	False	NA	NA	False	AATAAA	-21	NA	13758558	13765609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_13758559_13766449_1	chr16	+	2264	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	30	793	0	3	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTGGGTATTGTCATTT	521	False	NA	12	True	NA	NA	NA	13758558	13766449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022680.15_13676637_13720901_1	chr16	-	1149	11	ISM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	94	9496	-16	792	5prime_fragment	FALSE	canonical	3	195	junction_3	12.7342059037853	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTCTACTTCTGTTG	9788	False	NA	NA	False	AATAAA	-14	NA	13720901	13676636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUSG00000022681.16_13637189_13653314_1	chr16	+	931	8	NIC	ENSMUSG00000022681.16	novel	1014	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_13637189_13653314_3	chr16	+	1046	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022683.14_13532923_13548362_1	chr16	-	938	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	485	0	-55	0	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548362	13532922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
ENSMUSG00000022684.16_13489814_13521471_1	chr16	+	2906	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	92	5	0	-5	multi-exon	FALSE	canonical	3	82	junction_1	10.7760126660835	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACCTTTATAGAGAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	13489813	13521471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUSG00000022684.16_13489884_13517189_1	chr16	+	1543	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	162	4287	0	36	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTACCTTGGCTCCTCAGG	NA	False	NA	NA	False	AATAAA	-15	NA	13489883	13517189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
ENSMUSG00000022685.10_13355824_13367975_1	chr16	-	1257	3	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	117871	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.5	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13367975	13355823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_13356767_13358918_13359113_13367855
ENSMUSG00000022698.18_43960216_43981052_1	chr16	+	1810	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	2677	0	-485	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCATTGAGTGTTTAATA	NA	False	NA	3	True	AATACA	-15	NA	43960215	43981052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022698.18_43960216_43981602_1	chr16	+	2360	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	2127	0	65	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTATAACTCTTACGTT	NA	False	NA	NA	False	GATAAA	-23	NA	43960215	43981602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022701.19_43710262_43735919_1	chr16	+	930	6	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	0	24011	0	7074	5prime_fragment	FALSE	canonical	3	68	junction_1	7.7614431647729	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACTGAGGGAGACACTA	NA	False	NA	NA	False	AAAAAG	-19	NA	43710261	43735919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812
ENSMUSG00000022704.17_43681770_43710019_1	chr16	-	3022	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710019	43681769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ENSMUSG00000022706.17_18690768_18695289_1	chr16	-	957	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	323	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695289	18690767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022706.17_18690768_18695289_2	chr16	-	952	4	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	797.017077748164	398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695289	18690767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_18691413_18692286_18692441_18694073_18694158_18695220
ENSMUSG00000022706.17_18690768_18695289_3	chr16	-	986	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	-208	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695289	18690767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ENSMUSG00000022706.17_18690976_18695289_1	chr16	-	749	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	323	208	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022706.17_18690976_18695359_1	chr16	-	814	4	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	797.017077748164	393	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695359	18690975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_18691413_18692286_18692441_18694073_18694158_18695220
ENSMUSG00000022710.18_8507459_8512319_1	chr16	-	2006	9	ISM	ENSMUSG00000022710.18	ENSMUST00000162445.9	3447	32	27201	-1185	3126	0	3prime_fragment	FALSE	canonical	2	677	junction_5	114.595416029613	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8512319	8507458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276
ENSMUSG00000022710.18_8566586_8601244_1	chr16	-	641	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8928	-42762	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	15	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTGAGTATCACTTTT	NA	False	NA	NA	False	NA	NA	NA	8601244	8566585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_8566919_8574679_8574937_8601193
ENSMUSG00000022710.18_8566586_8610172_1	chr16	-	663	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	0	-42762	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	174.5	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTGAGTATCACTTTT	NA	False	NA	NA	False	NA	NA	NA	8610172	8566585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_8566919_8574679_8574937_8610099
ENSMUSG00000022721.20_18066866_18071366_1	chr16	+	2248	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	119	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	388	False	NA	8	True	AATAAA	-22	NA	18066865	18071366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUSG00000022721.20_18066866_18071366_2	chr16	+	2253	12	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.6614186759067	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	388	False	NA	8	True	AATAAA	-22	NA	18066865	18071366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_18067121_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUSG00000022722.19_59433691_59459530_1	chr16	-	1317	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	379	0	0	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACTAGAGTGTTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	59459530	59433690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUSG00000022724.16_59292185_59312539_1	chr16	+	1827	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	47	285	0	-115	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGCTCGTCTTGCTTCTT	NA	False	NA	13	True	CATAAA	-15	NA	59292184	59312539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUSG00000022748.9_57122363_57143906_1	chr16	-	969	9	ISM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	283303	0	283233	0	3prime_fragment	TRUE	canonical	3	200	junction_5	23.459739448681	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57143906	57122362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826
ENSMUSG00000022750.19_17577527_17611246_1	chr16	+	2564	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	178	junction_1	113.988912716203	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577526	17611246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022751.10_56977168_56987716_1	chr16	-	1167	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	-21	140	-12	0	multi-exon	FALSE	canonical	3	674	junction_8	39.9499687108764	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGTTTCCATGTGTGGT	NA	False	NA	71	True	ATTAAA	-16	NA	56987716	56977167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUSG00000022760.18_17345942_17348919_1	chr16	-	1238	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	0	-504	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7267	False	NA	1	True	AATAAA	-19	NA	17348919	17345941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
ENSMUSG00000022765.11_17223850_17246275_1	chr16	+	1031	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	2416	0	-2416	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTTGAAATATTAGTTT	1384	False	NA	20	True	AATATA	-18	NA	17223849	17246275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
ENSMUSG00000022771.18_16904539_16929100_1	chr16	-	2192	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	21	120	0	-119	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTCTGATCTCTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	16929100	16904538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022771.18_16906515_16929100_1	chr16	-	1747	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	6	1335	0	0	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGGGTCCAGTTTGAGC	NA	False	NA	-35	True	AATAAA	-13	NA	16929100	16906514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022774.14_31767424_31775973_1	chr16	+	660	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	93	1317	0	7	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGCCTTTAACTCTAGTC	NA	False	NA	14	True	ATTAAA	-15	NA	31767423	31775973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUSG00000022774.14_31767424_31777003_1	chr16	+	1690	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	93	287	0	-287	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCGGAGTCTCGCTAGTT	NA	False	NA	NA	False	AATAAA	-22	NA	31767423	31777003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUSG00000022779.17_16688631_16710854_1	chr16	+	2861	18	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_1	39.4304608859032	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688630	16710854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022789.16_16130102_16176802_1	chr16	-	4000	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176802	16130101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16130102_16176802_2	chr16	-	3955	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176802	16130101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16130102_16176875_1	chr16	-	4106	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176875	16130101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176802_1	chr16	-	2855	19	NIC	ENSMUSG00000022789.16	novel	3966	19	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176802	16131246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176875_1	chr16	-	2850	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	-52	1153	-52	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176875	16131246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176875_2	chr16	-	2883	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176875	16131246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022797.17_32427801_32449198_1	chr16	+	2413	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	63	2414	0	-2410	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTGTTGGTTGTGCTA	8020	False	NA	24	True	ATTAAA	-25	NA	32427800	32449198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUSG00000022800.15_32698183_32726233_1	chr16	+	1268	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	3012	0	84	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTCTCTGTTGACTTCT	NA	False	NA	NA	False	AATATA	-41	NA	32698182	32726233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022800.15_32698183_32726814_1	chr16	+	1849	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	2431	0	0	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTTGACTTCTGTCCT	NA	False	NA	15	True	AATAAA	-22	NA	32698182	32726814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022800.15_32698183_32728405_1	chr16	+	3440	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	840	0	-840	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTCTGAGCTATAAAGA	NA	False	NA	-2	True	AATAAA	-21	NA	32698182	32728405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022808.6_33071814_33119032_1	chr16	+	1554	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	1607	0	-903	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGGGACTGGTGCTGA	9283	False	NA	4	True	AATAAA	-15	NA	33071813	33119032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022808.6_33071814_33119935_1	chr16	+	2457	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	704	0	0	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTATTATTTTAAGAT	9283	False	NA	26	True	AATAAA	-26	NA	33071813	33119935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022814.7_33776967_33787373_1	chr16	-	1480	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	1803	0	-1803	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
ENSMUSG00000022814.7_33776967_33787373_2	chr16	-	1634	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	35	1815	0	-1803	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUSG00000022820.5_37467963_37474744_1	chr16	-	469	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	71	431	-16	0	multi-exon	FALSE	canonical	3	6062	junction_1	348	2379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTCTTTTTCTTGGAT	NA	False	NA	-2	True	AATAAA	-23	NA	37474744	37467962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_37468082_37469375_37469523_37474541
ENSMUSG00000022822.17_20150056_20181005_1	chr16	-	2182	7	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	64139	3	1751	0	3prime_fragment	FALSE	canonical	3	439	junction_6	35.3949933684915	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCTTGTTGTATAAAA	NA	False	NA	-6	True	AATAAA	-17	NA	20181005	20150055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931
ENSMUSG00000022837.15_36648769_36679934_1	chr16	+	1605	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648768	36679934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_36648769_36679934_2	chr16	+	1658	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648768	36679934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_36648769_36693083_1	chr16	+	2213	15	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTTATTTCAATGTT	NA	False	NA	52	True	AATAAA	-19	NA	36648768	36693083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUSG00000022841.16_20354299_20362657_1	chr16	+	1860	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	71	149	0	-149	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1424	False	NA	NA	False	AATAAA	-13	NA	20354298	20362657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUSG00000022844.9_35217682_35311253_1	chr16	-	1728	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	298	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311253	35217681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
ENSMUSG00000022849.6_35590745_35645918_1	chr16	+	1772	9	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_4	249.638457323787	836	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634414_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUSG00000022849.6_35590745_35646801_1	chr16	+	2586	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	-883	0	883	multi-exon	FALSE	canonical	3	531	junction_3	35.6118531058502	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGAGTTTGTACATGT	5404	False	NA	5	True	AATAAA	-14	NA	35590744	35646801	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUSG00000022858.17_22064503_22084676_1	chr16	-	2120	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1204	0	695	multi-exon	TRUE	canonical	3	1235	junction_5	313.549014310363	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	-13	True	ATTAAA	-16	NA	22084676	22064502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_22064503_22084676_2	chr16	-	2396	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	-709	0	695	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	-13	True	ATTAAA	-16	NA	22084676	22064502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUSG00000022858.17_22064613_22084676_1	chr16	-	2286	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	-599	0	585	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084676	22064612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUSG00000022858.17_22064613_22084676_2	chr16	-	2407	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	585	combination_of_known_junctions	FALSE	canonical	3	119	junction_8	731.055553444622	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084676	22064612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
ENSMUSG00000022858.17_22064613_22084676_3	chr16	-	2010	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1314	0	585	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084676	22064612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_22065212_22084676_1	chr16	-	1808	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	119	junction_8	731.055553444622	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
ENSMUSG00000022858.17_22065212_22084676_2	chr16	-	1411	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1913	0	0	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022864.15_78340431_78373545_2	chr16	-	2922	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	3205	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3243	False	NA	NA	False	NA	NA	NA	78373545	78340430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022864.15_78341849_78373545_1	chr16	-	1212	5	NIC	ENSMUSG00000022864.15	novel	1271	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
ENSMUSG00000022864.15_78341849_78373545_2	chr16	-	1236	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	-10	1418	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ENSMUSG00000022864.15_78341849_78373545_3	chr16	-	1504	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	4623	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022868.7_22713008_22718193_1	chr16	+	1260	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1851	0	-501	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22713007	22718193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000022871.14_22737084_22758507_1	chr16	+	1316	7	FSM	ENSMUSG00000022871.14	ENSMUST00000231880.2	798	7	-165	-353	0	0	multi-exon	TRUE	canonical	1	1	junction_1	173.937728320607	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22737083	22758507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22737345_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022881.16_22932701_22946490_1	chr16	-	1294	12	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	35	junction_8	593.762439626105	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22940979_22941051_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_2	chr16	-	1366	10	ISM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	-3	8	-3	0	intron_retention	FALSE	canonical	2	1242	junction_3	141.821048778181	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149
ENSMUSG00000022884.17_22926508_22932565_1	chr16	+	1869	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	-19	115	0	-115	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	2425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUSG00000022884.17_22926508_22932565_2	chr16	+	1625	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	132	0	-115	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932565_3	chr16	+	1762	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	132	0	-115	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	2099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932697_1	chr16	+	3027	9	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	0	0	0	intron_retention	FALSE	canonical	3	441	junction_1	660.216063118734	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ENSMUSG00000022884.17_22926508_22932697_2	chr16	+	3164	10	ISM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	-1	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ENSMUSG00000022884.17_22926508_22932697_3	chr16	+	1894	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	3009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932697_4	chr16	+	1868	11	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	738.769551348727	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ENSMUSG00000022884.17_22926508_22932697_5	chr16	+	2573	10	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	690.354516190552	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUSG00000022889.8_84515169_84532122_1	chr16	-	1081	10	FSM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	508	705	-4	-705	multi-exon	FALSE	canonical	3	703	junction_1	110.666443551761	1347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTGTCCCTGCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	84532122	84515168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
ENSMUSG00000022890.14_84624759_84631745_1	chr16	-	478	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	768	0	-25	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	4669	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ENSMUSG00000022890.14_84624759_84631745_2	chr16	-	473	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	545	junction_3	2933.80515144866	808	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696
ENSMUSG00000022890.14_84624759_84631745_3	chr16	-	533	5	ISM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	646	0	-25	0	3prime_fragment	FALSE	canonical	3	198	junction_4	3188.04854103572	780	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696
ENSMUSG00000022890.14_84624759_84631893_1	chr16	-	626	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	620	0	0	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	5000	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631893	84624758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ENSMUSG00000022898.14_94298642_94327293_1	chr16	-	2151	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	396	0	-2	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327293	94298641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022898.14_94299326_94327293_1	chr16	-	1467	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	396	684	-2	-684	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGGTTCTCACAGAGGG	NA	False	NA	-30	True	AATAAA	-13	NA	94327293	94299325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022900.15_36528579_36546677_1	chr16	+	2349	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14239	489	-7321	-426	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	20	True	AATAAA	-16	NA	36528578	36546677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_36528579_36547109_1	chr16	+	2781	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14239	57	-7321	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36528578	36547109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_36528668_36546677_1	chr16	+	2219	7	ISM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	14268	426	-7232	-426	3prime_fragment	FALSE	canonical	0	0	junction_6	113.338235188111	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	20	True	AATAAA	-16	NA	36528667	36546677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
ENSMUSG00000022905.13_35803724_35856387_1	chr16	+	3886	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	39	1114	0	886	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTGTGGCTGATTTC	NA	False	NA	10	True	AGTAAA	-21	NA	35803723	35856387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ENSMUSG00000022911.12_62624391_62667378_1	chr16	-	1102	7	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	25	10343	-22	7822	5prime_fragment	FALSE	canonical	3	43	junction_1	7.97217382873427	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCGTGGAGAAGGACAGTG	NA	False	NA	NA	False	AAAAAG	-14	NA	62667378	62624390	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
ENSMUSG00000022940.18_94165306_94171396_2	chr16	-	809	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	157	0	-28	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171396	94165305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ENSMUSG00000022940.18_94165306_94171571_1	chr16	-	1157	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	-203	-259	0	0	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
ENSMUSG00000022948.17_93380348_93400703_1	chr16	-	1751	11	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400703	93380347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
ENSMUSG00000022948.17_93380348_93400951_1	chr16	-	1591	11	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_10	36.3512035564161	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400951	93380347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
ENSMUSG00000022956.12_91722109_91728451_1	chr16	-	707	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	124	7	-12	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	2257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	935	False	NA	-8	True	AATAAA	-13	NA	91728451	91722108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUSG00000022957.21_91700917_91709224_1	chr16	+	1337	7	FSM	ENSMUSG00000022957.21	ENSMUST00000232198.2	1167	7	-34	-136	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3.24893144826965	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTTGGAGAACTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	91700916	91709224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_91701102_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
ENSMUSG00000022961.19_91444767_91451638_1	chr16	+	413	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-1	9283	0	-9283	5prime_fragment	FALSE	canonical	3	478	junction_2	6	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAAAAGACAACCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	91444766	91451638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_91444873_91448517_91448685_91451498
ENSMUSG00000022971.19_91184944_91190928_1	chr16	+	503	3	ISM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	15206	0	267	0	3prime_fragment	FALSE	canonical	3	47	junction_2	4	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91184943	91190928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_91185005_91188608_91188767_91190644
ENSMUSG00000022972.11_90722697_90731717_1	chr16	-	1145	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	285	0	-3	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90731717	90722696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000022992.18_98416689_98432150_1	chr15	-	2112	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432150	98416688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
ENSMUSG00000022999.16_98801798_98815936_1	chr15	-	2128	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	176	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98815936	98801797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUSG00000023004.9_98829306_98832319_1	chr15	-	1616	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	18490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	158	False	NA	NA	False	AGTAAA	-18	NA	98832319	98829305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUSG00000023010.16_99290867_99306496_1	chr15	+	914	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	104	1434	0	5	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACTTAGTGGTTTTCTCT	NA	False	NA	12	True	AATGAA	-18	NA	99290866	99306496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUSG00000023010.16_99290867_99307930_2	chr15	+	2348	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	104	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290866	99307930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUSG00000023015.15_99519155_99549493_1	chr15	-	2243	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	31	778	0	-777	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGTTGCATAGCTC	NA	False	NA	-5	True	AATAAA	-18	NA	99549493	99519154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
ENSMUSG00000023015.15_99519155_99549493_3	chr15	-	2112	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	44	777	0	-777	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGTTGCATAGCTC	NA	False	NA	-5	True	AATAAA	-18	NA	99549493	99519154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ENSMUSG00000023020.4_99623558_99625929_1	chr15	+	576	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	30	1484	0	478	multi-exon	FALSE	canonical	3	1440	junction_1	0	515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTAGTGGTTCTGTG	NA	False	NA	20	True	ATTAAA	-15	NA	99623557	99625929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_99623730_99625525
ENSMUSG00000023021.16_99633473_99670343_1	chr15	-	1866	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670343	99633472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023021.16_99633473_99670343_2	chr15	-	1957	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	139	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670343	99633472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023027.14_100125752_100159129_1	chr15	+	2275	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125751	100159129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158177_100158218
ENSMUSG00000023030.17_100285779_100320883_1	chr15	-	2826	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8380244062904	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320883	100285778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_100286362_100286507_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ENSMUSG00000023047.12_102360758_102363068_1	chr15	+	943	4	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6956	-3	0	0	3prime_fragment	FALSE	canonical	3	123	junction_2	13.3666251038423	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360757	102363068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_102360879_102363068_2	chr15	+	822	4	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	7077	-3	121	0	3prime_fragment	FALSE	canonical	3	123	junction_2	13.3666251038423	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360878	102363068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023051.12_102426890_102432111_1	chr15	+	1424	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	125.715584408876	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_2	chr15	+	1661	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-4	0	0	0	intron_retention	FALSE	canonical	3	312	junction_3	28	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUSG00000023051.12_102426890_102432111_3	chr15	+	1510	9	FSM	ENSMUSG00000023051.12	ENSMUST00000154948.8	951	9	-102	-457	0	0	multi-exon	FALSE	canonical	3	32	junction_3	117.676463237132	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102427237_102432111_1	chr15	+	1422	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427236	102432111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023067.15_29309953_29318565_1	chr17	+	812	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	110	0	14	multi-exon	FALSE	canonical	3	83	junction_1	538	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACAAAACAAACCTAA	1857	False	NA	94	True	AAAAAG	-22	NA	29309952	29318565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29310076_29317370_29317812_29318317
ENSMUSG00000023067.15_29309953_29319701_1	chr17	+	1948	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	-1026	0	0	multi-exon	FALSE	canonical	3	83	junction_1	538	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTGTCATTAGAGCAAA	1857	False	NA	29	True	NA	NA	NA	29309952	29319701	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29310076_29317370_29317812_29318317
ENSMUSG00000023067.15_29312743_29318565_1	chr17	+	782	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	1131	0	14	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACAAAACAAACCTAA	4647	False	NA	94	True	AAAAAG	-22	NA	29312742	29318565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUSG00000023074.12_52433475_52459379_1	chrX	-	2186	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	-423	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	-4	True	CATAAA	-18	NA	52459379	52433474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023089.13_24518665_24527569_1	chr6	-	432	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	443	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_4	429.359042643799	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
ENSMUSG00000023104.10_134611611_134626909_1	chr5	+	1178	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	67	3750	0	100	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCTCTTGTACCCCAGGC	NA	False	NA	31	True	NA	NA	NA	134611610	134626909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023104.10_134611611_134627182_2	chr5	+	1451	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	67	3477	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTATGCTTAATTGC	NA	False	NA	19	True	GATAAA	-15	NA	134611610	134627182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023106.16_124045345_124065485_2	chr5	+	819	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	1413	0	289	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCGGCGTCCTCACTGT	9085	False	NA	8	True	AGTAAA	-15	NA	124045344	124065485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065655_2	chr5	+	1150	8	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	459	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	684.091353250307	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9085	False	NA	11	True	AATAAA	-20	NA	124045344	124065655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_124045430_124046162_124046278_124046446_124046606_124055240_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065655_3	chr5	+	989	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	1243	0	459	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9085	False	NA	11	True	AATAAA	-20	NA	124045344	124065655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124066898_1	chr5	+	2232	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	9085	False	NA	NA	False	AATGAA	-2	NA	124045344	124066898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023110.13_54744644_54754827_1	chr14	-	2536	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	155	0	-9	0	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTGCTTCTTTCTGCCT	4850	False	NA	-11	True	AATAAA	-25	NA	54754827	54744643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ENSMUSG00000023110.13_54744907_54754827_1	chr14	-	2273	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	155	263	-9	-263	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACTAGAGGACACAAGCC	4850	False	NA	NA	False	NA	NA	NA	54754827	54744906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ENSMUSG00000023150.15_151220269_151240010_1	chr1	+	3307	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	41	163	0	-156	multi-exon	FALSE	canonical	3	1145	junction_2	98.7764172879585	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTTCAGAAGTGTTTT	NA	False	NA	13	True	ATTAAA	-23	NA	151220268	151240010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023156.5_14378359_14389472_1	chr14	-	2047	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	-66	420	-66	-420	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAATTTCTCTGTAACTT	NA	False	NA	-14	True	NA	NA	NA	14389472	14378358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUSG00000023169.16_96473868_96540170_1	chr15	-	2436	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-39	4569	-39	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96540170	96473867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ENSMUSG00000023169.16_96474126_96539414_1	chr15	-	2496	16	FSM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	429	258	429	-258	multi-exon	FALSE	canonical	3	92	junction_15	98.2259074220691	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96539414	96474125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
ENSMUSG00000023169.16_96474126_96540280_1	chr15	-	2288	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-149	4827	0	-258	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96540280	96474125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ENSMUSG00000023169.16_96474126_96540794_1	chr15	-	2439	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	0	4827	0	-258	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96540794	96474125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
ENSMUSG00000023170.15_69804876_69807417_1	chr11	+	1362	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	-142	0	0	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4091	False	NA	12	True	AATAAA	-22	NA	69804875	69807417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUSG00000023175.16_79540342_79547657_1	chr10	+	1098	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	17	146	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAAGTGTTGTCACTAC	NA	False	NA	80	True	NA	NA	NA	79540341	79547657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUSG00000023262.14_106310189_106315387_1	chr9	-	1389	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	131	9	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUSG00000023277.14_106088781_106092588_1	chr9	+	1478	7	ISM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	4784	-2	-137	0	3prime_fragment	FALSE	canonical	3	299	junction_6	32.8705372974374	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106088780	106092588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUSG00000023307.15_37185109_37199227_1	chr19	+	1319	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	167	323	134	-149	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTCTTTTGTATATACTC	NA	False	NA	28	True	ATTAAA	-22	NA	37185108	37199227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37188238_37199221_1	chr19	+	950	5	ISM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	3296	329	3263	-155	3prime_fragment	FALSE	canonical	3	653	junction_2	54.554445281755	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACGCCTCTTTTGTAT	NA	False	NA	22	True	ATTAAA	-16	NA	37188237	37199221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37188238_37199396_1	chr19	+	1125	5	ISM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	3296	154	3263	20	3prime_fragment	FALSE	canonical	3	653	junction_2	54.554445281755	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGCATTGAAGTGATTA	NA	False	NA	13	True	AATAAA	-20	NA	37188237	37199396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37188238_37199550_1	chr19	+	1279	5	ISM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	3296	0	3263	0	3prime_fragment	FALSE	canonical	3	653	junction_2	54.554445281755	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37188237	37199550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023345.18_106158579_106227076_1	chr9	+	1374	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	319	644	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9876	False	NA	7	True	AATAAA	-19	NA	106158578	106227076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
ENSMUSG00000023393.16_180367172_180384073_1	chr2	+	2089	13	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	51.5985437994351	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367171	180384073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023403.15_49372538_49446440_1	chr6	+	2432	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCATATTCTTTGCAAT	173	False	NA	NA	False	AATAAA	-27	NA	49372537	49446440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023452.20_32894105_32942970_1	chr5	-	1703	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	20	460	0	-337	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTATCCTGGGCTCTGC	NA	False	NA	2	True	AGTAAA	-21	NA	32942970	32894104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023456.17_124787555_124791121_1	chr6	-	1463	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	138	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	3461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	False	NA	-23	True	AATACA	-16	NA	124791121	124787554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023456.17_124787678_124791121_1	chr6	-	1340	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	138	123	0	-123	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	3455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023467.19_45169038_45171806_1	chr7	+	776	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	5012	0	3806	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5090	False	NA	17	True	AATAAA	-18	NA	45169037	45171806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023505.14_124807180_124810241_1	chr6	+	1163	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_2	chr6	+	1082	7	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	434.945207277116	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_124807237_124807326_124807381_124807465_124807614_124808324_124808456_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_3	chr6	+	895	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.474660946665	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809237_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_4	chr6	+	1024	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	529	423	0	-254	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_5	chr6	+	1681	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	-18	254	0	-254	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810495_1	chr6	+	1278	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	529	169	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCATGATCTTTCCC	1344	False	NA	NA	False	CATAAA	-25	NA	124807179	124810495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810664_1	chr6	+	1447	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	529	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	1344	False	NA	39	True	NA	NA	NA	124807179	124810664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023723.18_88095250_88101797_1	chr11	+	760	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	36	536	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTTGAAACTGTAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	88095249	88101797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023755.11_98775659_98779255_1	chr15	-	1155	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	106	0	-40	0	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779255	98775658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023764.19_3129332_3143442_1	chr11	-	618	5	ISM	ENSMUSG00000023764.19	ENSMUST00000138126.8	2916	22	-21	44400	-3	6236	5prime_fragment	FALSE	canonical	3	72	junction_1	15.833114033569	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAATGTCTTGTTTCTGTT	8000	False	NA	NA	False	AATACA	-24	NA	3143442	3129331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023791.19_31903238_31918548_1	chr16	-	925	5	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918548	31903237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
ENSMUSG00000023791.19_31903238_31918548_2	chr16	-	1145	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918548	31903237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
ENSMUSG00000023832.15_13161925_13179258_1	chr17	-	2205	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	-405	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179258	13161924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ENSMUSG00000023832.15_13161925_13179607_1	chr17	-	2075	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	27	148	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179607	13161924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ENSMUSG00000023861.18_8502628_8516494_1	chr17	+	1002	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	-56	-391	0	1	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023861.18_8502628_8516494_2	chr17	+	921	4	NIC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	472.094858641307	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023883.14_15165271_15175191_1	chr17	-	1032	7	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	6344	0	-2223	0	3prime_fragment	FALSE	canonical	3	756	junction_1	78.1039193781095	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15175191	15165270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053
ENSMUSG00000023904.11_23892582_23894201_1	chr17	+	856	4	NNC	ENSMUSG00000023904.11	novel	597	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_23892582_23894201_2	chr17	+	934	3	NIC	ENSMUSG00000023904.11	novel	946	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	343	junction_1	29	385	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_23892941_23894201_1	chr17	+	575	3	ISM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	340	-53	340	0	3prime_fragment	FALSE	canonical	3	343	junction_1	29	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892940	23894201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_23892941_23894499_1	chr17	+	873	3	ISM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	340	-351	340	298	3prime_fragment	FALSE	canonical	3	343	junction_1	29	320	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTTGTTTCCGTGTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	23892940	23894499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_23893043_23893520_23893650_23893857
ENSMUSG00000023908.9_23945443_23955709_1	chr17	+	1511	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	138.628412436607	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTCCCTTTATT	3071	False	NA	34	True	AAAAAG	-45	NA	23945442	23955709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_23945443_23955709_2	chr17	+	1912	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	133	-5	0	0	multi-exon	FALSE	canonical	3	384	junction_2	52.6761379583211	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTCCCTTTATT	3071	False	NA	34	True	AAAAAG	-45	NA	23945442	23955709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_23945443_23955709_3	chr17	+	1900	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_7	153.550231095195	186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTCCCTTTATT	3071	False	NA	34	True	AAAAAG	-45	NA	23945442	23955709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955364_23955468
ENSMUSG00000023921.10_41245576_41271806_1	chr17	+	2601	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	1073	0	-1073	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTGAAAATCATTTATAC	NA	False	NA	NA	False	AATACA	-39	NA	41245575	41271806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023921.10_41245576_41272551_1	chr17	+	3346	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	328	0	-328	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGTGTGATGTTAC	NA	False	NA	16	True	AATAAA	-17	NA	41245575	41272551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023932.10_45702810_45744471_1	chr17	-	2835	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	192	0	-4	0	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2376	False	NA	-2	True	AATAAA	-20	NA	45744471	45702809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUSG00000023939.8_46006229_46009421_1	chr17	+	635	3	NNC	ENSMUSG00000023939.8	novel	510	2	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	542	431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	46006228	46009421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_46006325_46006407_46006499_46008973
ENSMUSG00000023940.15_53983082_53996326_2	chr17	-	2325	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	35	1268	-12	-1268	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996326	53983081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
ENSMUSG00000023942.16_45896128_45906453_1	chr17	-	2047	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906453	45896127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000023942.16_45896128_45906453_2	chr17	-	2053	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906453	45896127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000023942.16_45896128_45906453_3	chr17	-	1952	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	45	-1	-12	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906453	45896127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUSG00000023942.16_45896128_45910544_1	chr17	-	2153	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	684.125062098821	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45910544	45896127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ENSMUSG00000023942.16_45896128_45910544_2	chr17	-	2147	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	645.50828557468	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45910544	45896127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ENSMUSG00000023971.10_46977250_46985232_1	chr17	-	2181	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-19	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	153.326382569461	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	-3	True	NA	NA	NA	46985232	46977249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_46978168_46978366_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_46978157_46985232_1	chr17	-	1280	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-19	227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	153.326382569461	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCAGCACTGCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	46985232	46978156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_46978168_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_46978169_46985232_1	chr17	-	1147	4	FSM	ENSMUSG00000023971.10	ENSMUST00000233247.2	406	4	-36	-705	-19	215	multi-exon	FALSE	canonical	3	56	junction_3	166.85522666871	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46985122
ENSMUSG00000023971.10_46978169_46985232_2	chr17	-	1461	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	46	-218	-19	215	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023973.14_47046966_47063123_1	chr17	-	1556	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	17	335	0	-284	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGGTTCCTGGGTCCTC	NA	False	NA	-1	True	AGTAAA	-17	NA	47063123	47046965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ENSMUSG00000023980.8_47799207_47813212_1	chr17	-	2547	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	5	232	0	0	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_47803974_47813212_1	chr17	-	1305	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	2	385	0	-385	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTACTATTCTGGTAGC	NA	False	NA	-9	True	AATAAA	-16	NA	47813212	47803973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023982.9_47705483_47706639_1	chr17	-	524	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4870	0	4870	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6706	False	NA	0	True	NA	NA	NA	47706639	47705482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_47705746_47706032_47706127_47706472
ENSMUSG00000023987.15_48041701_48045408_1	chr17	+	692	5	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	3934	-1	3932	1	3prime_fragment	FALSE	canonical	3	133	junction_1	119.423615755009	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48041700	48045408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48042333_48045407_1	chr17	+	728	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	4564	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	171.057738790152	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48042332	48045407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_48042393_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48043550_48045408_1	chr17	+	650	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5781	1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48043549	48045408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023988.9_47912161_47922143_1	chr17	-	1675	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	274	1905	274	-1905	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTTTTGGTCCCT	2615	False	NA	-2	True	AAAACA	-18	NA	47922143	47912160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
ENSMUSG00000024007.16_29469803_29482923_1	chr17	-	1199	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	237	26	-1	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGTGGTCTAGTATTGT	9926	False	NA	-25	True	AATAAA	-22	NA	29482923	29469802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUSG00000024007.16_29469803_29483160_1	chr17	-	1302	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	714.950969569864	1067	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGTGGTCTAGTATTGT	9689	False	NA	-25	True	AATAAA	-22	NA	29483160	29469802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_29470700_29471223_29471293_29480710_29480866_29482979
ENSMUSG00000024008.17_29376890_29408076_1	chr17	-	2433	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-4999	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	76	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	3125	False	NA	-9	True	AGTAAA	-14	NA	29408076	29376889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
ENSMUSG00000024018.19_29923247_29935959_1	chr17	-	397	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	59	941	0	140	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCCTGCTGACAAGGT	NA	False	NA	-2	True	AATAAA	-27	NA	29935959	29923246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
ENSMUSG00000024019.19_29879569_29922335_1	chr17	+	3762	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	2618	0	2	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCTGTGCTGGGCTG	NA	False	NA	18	True	ATTAAA	-18	NA	29879568	29922335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000024026.14_30811835_30831592_1	chr17	-	1899	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	41	7925	-6	0	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	1334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831592	30811834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_30812485_30831592_1	chr17	-	1249	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	41	8575	-6	355	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTAACTTTACTTTTCTG	NA	False	NA	NA	False	TATAAA	-18	NA	30831592	30812484	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_30812840_30831592_1	chr17	-	894	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	41	8930	-6	0	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831592	30812839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_30822079_30831592_1	chr17	-	562	4	NNC	ENSMUSG00000024026.14	novel	9865	6	NA	NA	-6	-3054	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1689.06213292729	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30831592	30822078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_30822276_30822360_30822492_30822993_30823077_30831441
ENSMUSG00000024037.14_31715096_31731266_1	chr17	-	1895	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	459	1800	-9	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGAATGTTCAGCAG	NA	False	NA	-17	True	AATAAA	-17	NA	31731266	31715095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ENSMUSG00000024045.7_32523666_32540112_1	chr17	-	2664	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	47	1020	-1	0	multi-exon	TRUE	canonical	3	426	junction_6	74.0811964579343	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTGTTTTGTTTTTG	NA	False	NA	-9	True	AATAAA	-14	NA	32540112	32523665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ENSMUSG00000024045.7_32523971_32540112_1	chr17	-	2359	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	47	1325	-1	0	multi-exon	FALSE	canonical	3	426	junction_6	74.0811964579343	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTCCTAAAACGGACAG	NA	False	NA	-29	True	AATAAA	-22	NA	32540112	32523970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ENSMUSG00000024048.16_71301289_71309182_1	chr17	-	932	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	367	638	0	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	2450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2294	False	NA	-19	True	ATTAAA	-14	NA	71309182	71301288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
ENSMUSG00000024067.15_74606479_74623389_1	chr17	-	780	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	14	-172	0	0	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
ENSMUSG00000024069.15_74702624_74730662_1	chr17	+	1573	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	21	554	0	0	multi-exon	TRUE	canonical	3	152	junction_5	21.3572043468894	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTGTGGCAGTGAGGT	NA	False	NA	14	True	TATAAA	-17	NA	74702623	74730662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024072.10_74800923_74806967_1	chr17	+	1366	4	ISM	ENSMUSG00000024072.10	ENSMUST00000234432.2	1991	7	4378	-12	0	12	3prime_fragment	FALSE	canonical	3	423	junction_2	44.5645599103144	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATACCTTGTCCTATATTA	NA	False	NA	17	True	AATAAA	-29	NA	74800922	74806967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_74801095_74803584_74803663_74805303_74805418_74805965
ENSMUSG00000024078.8_75024757_75170565_1	chr17	+	2709	21	NNC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.5724964966845	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	75024756	75170565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_75024784_75024882_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ENSMUSG00000024081.10_79227274_79244479_1	chr17	-	3215	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	16	839	-9	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTAGTTTTTGCTAGTCA	NA	False	NA	-6	True	AATAAA	-16	NA	79244479	79227273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
ENSMUSG00000024082.6_79244565_79254602_2	chr17	+	1423	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	326	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCAAACTAGTATCTCT	NA	False	NA	24	True	AATAAA	-33	NA	79244564	79254602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUSG00000024082.6_79244565_79255361_1	chr17	+	1284	10	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	142.310909847869	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCTGTACCAAATCTG	NA	False	NA	NA	False	AATAAA	-13	NA	79244564	79255361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255201
ENSMUSG00000024084.9_79359617_79397650_1	chr17	+	1620	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	282	157	0	0	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_79359617_79397814_1	chr17	+	1784	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	282	-7	0	7	multi-exon	FALSE	canonical	3	226	junction_1	6.47216261298253	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTATTGCCTCTTTGTTT	NA	False	NA	5	True	AATATA	-21	NA	79359616	79397814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024095.16_80337770_80369120_1	chr17	-	1620	13	NNC	ENSMUSG00000024095.16	novel	3009	13	NA	NA	444	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	159.429974178843	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTGTTGTTAACTTA	4106	False	NA	-4	True	AATAAA	-16	NA	80369120	80337769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356297_80357240_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024096.18_66171458_66191806_1	chr17	-	703	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	143	16045	143	229	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCAGGAGCCAGAGGTG	NA	False	NA	23	True	AAAAAG	-8	NA	66191806	66171457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_66171728_66174526_66174826_66191672
ENSMUSG00000024096.18_66171458_66192289_1	chr17	-	678	3	ISM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	504	15697	-340	229	5prime_fragment	FALSE	canonical	3	126	junction_2	268	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCAGGAGCCAGAGGTG	NA	False	NA	23	True	AAAAAG	-8	NA	66192289	66171457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_66171728_66174526_66174826_66192180
ENSMUSG00000024096.18_66171568_66191806_1	chr17	-	593	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	143	16155	143	119	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191806	66171567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_66171728_66174526_66174826_66191672
ENSMUSG00000024097.12_80507509_80514734_1	chr17	-	2255	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80507509_80514734_2	chr17	-	2279	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	-2	-1237	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	2379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_1	chr17	-	1013	7	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	135	junction_1	782.029553292088	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_80509032_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_2	chr17	-	1932	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	759	junction_3	536.547735268934	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_3	chr17	-	1058	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	1230	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_4	chr17	-	1025	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024099.16_66386436_66408504_1	chr17	-	844	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	50	803	0	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	2420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5502	False	NA	-11	True	AATAAA	-15	NA	66408504	66386435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ENSMUSG00000024101.16_66418640_66426443_1	chr17	+	1750	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	100	1055	0	1	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGGAGCTGTCCTTTTT	NA	False	NA	25	True	AATAAA	-33	NA	66418639	66426443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024118.15_24434213_24439764_1	chr17	-	1981	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	185	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3337	False	NA	0	True	AATAAA	-21	NA	24439764	24434212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUSG00000024118.15_24434520_24439764_2	chr17	-	1674	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	492	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTGGTTTCTTGTTTC	3337	False	NA	-7	True	TTTAAA	-28	NA	24439764	24434519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUSG00000024132.7_24645657_24658215_1	chr17	+	1123	8	NNC	ENSMUSG00000024132.7	novel	1137	7	NA	NA	0	21	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	238.181460578411	478	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGCCACATATGTGCCT	4882	False	NA	15	True	NA	NA	NA	24645656	24658215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_24645717_24645826_24645914_24651676_24651784_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUSG00000024132.7_24645657_24658215_2	chr17	+	1126	6	NIC	ENSMUSG00000024132.7	novel	1137	7	NA	NA	0	21	intron_retention	FALSE	canonical	3	503	junction_1	25.350345165303	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGCCACATATGTGCCT	4882	False	NA	15	True	NA	NA	NA	24645656	24658215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUSG00000024146.10_87332978_87342730_1	chr17	+	676	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	508	0	-170	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTGTTCCTGACTTCTG	NA	False	NA	13	True	AATGAA	-1	NA	87332977	87342730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024146.10_87332978_87342900_1	chr17	+	846	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	338	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87332977	87342900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024150.13_87562086_87573308_1	chr17	-	1900	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	15	-1312	0	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573308	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
ENSMUSG00000024150.13_87562086_87573308_2	chr17	-	1768	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	55	215	0	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573308	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUSG00000024150.13_87562086_87573418_1	chr17	-	1878	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	-55	215	-55	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573418	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUSG00000024150.13_87562086_87573418_2	chr17	-	1830	4	NNC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573418	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
ENSMUSG00000024150.13_87562086_87573418_3	chr17	-	2010	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	-95	-1312	-55	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573418	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
ENSMUSG00000024151.14_87979989_88031141_1	chr17	+	3052	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	231	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4892	False	NA	19	True	AATAAA	-16	NA	87979988	88031141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ENSMUSG00000024160.17_25105733_25111123_1	chr17	+	1870	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	79	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105732	25111123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024165.10_25161127_25179621_1	chr17	-	2947	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	42	-317	-2	317	multi-exon	TRUE	canonical	3	1697	junction_3	70.6872513258225	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4815	False	NA	-5	True	ATTAAA	-14	NA	25179621	25161126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUSG00000024177.10_26310710_26314447_1	chr17	-	875	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	129	2	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_26310710_26314447_2	chr17	-	1004	4	NIC	ENSMUSG00000024177.10	novel	926	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	304	junction_1	22.7596133534821	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_26311127_26312590_26312935_26313110_26313245_26314338
ENSMUSG00000024181.10_26342518_26345587_1	chr17	+	1034	5	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	597.959603568669	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_26342824_26343529_26343693_26344230_26344366_26344451_26344539_26345244
ENSMUSG00000024188.17_26471925_26500943_1	chr17	+	1399	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	0	3535	0	1	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGTTGGGGTATCTG	NA	False	NA	11	True	AATAAA	-20	NA	26471924	26500943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
ENSMUSG00000024194.17_27156950_27158442_1	chr17	-	668	7	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	363.746554011932	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_2	chr17	-	745	6	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	300	junction_5	273.070979783645	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_5	chr17	-	693	5	NIC	ENSMUSG00000024194.17	novel	662	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	227	junction_4	311.485954739536	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158424
ENSMUSG00000024197.11_56585960_56597511_1	chr17	-	2161	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	1484	0	-1484	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGGTGTATATGTGTG	NA	False	NA	-3	True	AATAAA	-23	NA	56597511	56585959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ENSMUSG00000024197.11_56586498_56597511_1	chr17	-	1623	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	2022	0	-2022	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAATGAATAGTGATAGC	NA	False	NA	NA	False	NA	NA	NA	56597511	56586497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ENSMUSG00000024209.10_57190985_57195906_1	chr17	+	698	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8482	2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	18	True	ATTAAA	-18	NA	57190984	57195906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024217.11_28059129_28070942_1	chr17	+	729	6	NNC	ENSMUSG00000024217.11	novel	882	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	811.755529700907	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059128	28070942	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_28059180_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUSG00000024218.14_28120100_28126712_1	chr17	-	1215	6	NNC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	54	junction_1	40	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGGGTTTCTCTGTGTTG	NA	False	NA	-7	True	AATAAA	-21	NA	28126712	28120099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_28120278_28120298_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ENSMUSG00000024231.16_3382988_3435403_1	chr18	+	2873	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	0	18	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCATAATGCCTTTTTC	-35	True	NA	90	True	NA	NA	NA	3382987	3435403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUSG00000024231.16_3383257_3435403_1	chr18	+	2829	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	25	974	0	18	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCATAATGCCTTTTTC	13	True	NA	90	True	NA	NA	NA	3383256	3435403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUSG00000024234.8_4375603_4396785_1	chr18	+	2076	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	7	543	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-1	True	NA	18	True	AATAAA	-20	NA	4375602	4396785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024258.5_31922212_31929759_1	chr18	+	924	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	-1	-217	0	5	multi-exon	FALSE	canonical	3	63	junction_2	315.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTATTTATTTGTTAA	NA	False	NA	26	True	AATAAA	-25	NA	31922211	31929759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_31922298_31924892_31925074_31929102
ENSMUSG00000024269.12_25271668_25301751_1	chr18	-	1272	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	313	2574	0	-2574	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGTATCGACTAGTTA	NA	False	NA	-5	True	AATAAA	-21	NA	25301751	25271667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
ENSMUSG00000024271.9_24737020_24771869_1	chr18	+	2769	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	2	695	0	2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	92	True	TTTAAA	-12	NA	24737019	24771869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ENSMUSG00000024287.9_9958180_9993725_1	chr18	+	2297	20	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_16	182.47716815401	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	13	True	NA	14	True	AATAAA	-14	NA	9958179	9993725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987669_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024287.9_9958180_9993725_2	chr18	+	2096	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	274	1764	0	0	multi-exon	FALSE	canonical	0	0	junction_17	177.913574524262	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	13	True	NA	14	True	AATAAA	-14	NA	9958179	9993725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024313.9_21194708_21200630_1	chr18	+	416	3	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-272	-16612	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	15	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	21194707	21200630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_21194811_21194905_21195074_21200485
ENSMUSG00000024317.16_21134965_21159372_1	chr18	+	1051	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	1220	0	-1070	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATTCTCTAGACAGTTA	NA	False	NA	56	True	AATAAA	-16	NA	21134964	21159372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_21134965_21159372_3	chr18	+	943	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	-83	1909	0	-1070	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATTCTCTAGACAGTTA	NA	False	NA	56	True	AATAAA	-16	NA	21134964	21159372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUSG00000024317.16_21134965_21160585_2	chr18	+	2156	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	-83	696	0	1	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21134964	21160585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUSG00000024317.16_21134965_21160585_3	chr18	+	2099	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	-187	-143	0	1	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21134964	21160585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
ENSMUSG00000024319.19_34174889_34185463_1	chr17	+	2734	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	103	546	0	516	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCGTGTCCTCTCCT	NA	False	NA	13	True	NA	NA	NA	34174888	34185463	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ENSMUSG00000024327.17_34247247_34250474_2	chr17	-	2196	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	120	4	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250474	34247246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUSG00000024327.17_34247247_34250662_1	chr17	-	1660	7	NIC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	218.983763984659	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250662	34247246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34250521
ENSMUSG00000024335.21_34331004_34338305_1	chr17	-	3642	12	ISM	ENSMUSG00000024335.21	ENSMUST00000114242.9	4483	13	2416	7	-842	0	3prime_fragment	TRUE	canonical	3	318	junction_10	50.8649158990899	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9363	False	NA	-16	True	AATAAA	-16	NA	34338305	34331003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579
ENSMUSG00000024346.7_36537136_36587319_1	chr18	-	875	4	NNC	ENSMUSG00000024346.7	novel	1109	4	NA	NA	258	122	at_least_one_novel_splicesite	FALSE	canonical	3	254	junction_3	1343.56044399449	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	-23	True	AATAAA	-20	NA	36587319	36537135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_36537514_36565358_36565444_36584132_36584300_36587074
ENSMUSG00000024346.7_36537136_36587583_1	chr18	-	708	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	-6	407	-6	122	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	-23	True	AATAAA	-20	NA	36587583	36537135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUSG00000024350.7_35808084_35836174_1	chr18	-	1218	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	0	3928	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTACTCTCTGCTG	NA	False	NA	-10	True	AATACA	-14	NA	35836174	35808083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
ENSMUSG00000024359.11_35070686_35087410_1	chr18	-	2830	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	219	0	-219	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	3080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	199	False	NA	-11	True	AATAAA	-19	NA	35087410	35070685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUSG00000024359.11_35071171_35087410_1	chr18	-	2345	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	704	0	149	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCTGTCACTAGCCT	199	False	NA	-8	True	AATAAA	-20	NA	35087410	35071170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUSG00000024360.9_35037180_35065060_1	chr18	-	2367	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	1342	0	-1342	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	-10	True	AATAAA	-31	NA	35065060	35037179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUSG00000024360.9_35037532_35065060_1	chr18	-	2015	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	1694	0	-1694	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTCTCTCTTGGTCTCT	NA	False	NA	-7	True	AATATA	-16	NA	35065060	35037531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUSG00000024369.17_35069384_35075230_2	chr17	+	1263	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	118	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	4	True	NA	30	True	AGTAAA	-20	NA	35069383	35075230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024369.17_35069384_35075348_1	chr17	+	1507	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	10	-118	0	0	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024370.18_34765842_34784788_1	chr18	-	3027	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	0	1106	0	889	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATTCCATATAATATT	NA	False	NA	-14	True	AATAAA	-14	NA	34784788	34765841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUSG00000024384.5_32200794_32230572_1	chr18	+	2804	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	6809	0	0	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTGTCTCATCATTGT	NA	False	NA	17	True	AATAAA	-18	NA	32200793	32230572	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ENSMUSG00000024387.14_35335176_35340262_1	chr17	-	950	7	NNC	ENSMUSG00000024387.14	novel	961	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	334.965504028234	1123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGTCTCCTACTGT	NA	False	NA	-11	True	AATAAA	-13	NA	35340262	35335175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_35335402_35336671_35336853_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ENSMUSG00000024400.17_31937151_31967141_1	chr18	+	1160	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	-78	1334	0	-1334	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACTGAATAAAATCTAAAG	5655	False	NA	NA	False	AATAAA	-21	NA	31937150	31967141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ENSMUSG00000024404.8_12261812_12288562_1	chr18	+	1894	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	14	1882	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATAATATAATTCTTTAAC	5519	False	NA	18	True	AATAAA	-28	NA	12261811	12288562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUSG00000024404.8_12261812_12289758_1	chr18	+	3090	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	14	686	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTCATTGTGTGGTTAA	5519	False	NA	10	True	ATTAAA	-22	NA	12261811	12289758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUSG00000024414.14_94544602_94550915_1	chr11	+	826	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	-171	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544601	94550915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
ENSMUSG00000024414.14_94544837_94550915_1	chr11	+	831	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	-20	-372	0	0	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544836	94550915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
ENSMUSG00000024422.15_36198828_36203521_1	chr17	+	1045	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	0	4	intron_retention	FALSE	canonical	3	1016	junction_3	64.0387382761403	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_36198828_36203521_2	chr17	+	988	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	400.503017050642	708	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_36198828_36203521_3	chr17	+	959	7	ISM	ENSMUSG00000024422.15	ENSMUST00000174366.8	3275	20	8111	-4	0	4	3prime_fragment	FALSE	canonical	3	1011	junction_1	73.3325757536626	809	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_36198828_36203521_4	chr17	+	878	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	414.989725441754	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200172_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024423.7_13105329_13126007_1	chr18	+	3414	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	349	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13105328	13126007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUSG00000024425.5_38552037_38597459_2	chr18	+	928	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	77	791	0	23	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTCTCTATTTGTTC	9144	False	NA	10	True	AATAAA	-17	NA	38552036	38597459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUSG00000024429.10_36291017_36299759_1	chr17	+	1979	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	274	595	-263	-595	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTTCCCCAGGTGGCCT	NA	False	NA	23	True	AATAAA	-17	NA	36291016	36299759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
ENSMUSG00000024436.17_36221271_36227281_1	chr17	-	1012	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174349.8	488	6	-52	-472	0	0	multi-exon	FALSE	canonical	3	24	junction_2	528.957313967772	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000024446.14_36566565_36568739_1	chr17	-	501	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	222	6	-4	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568739	36566564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
ENSMUSG00000024446.14_36566565_36568739_2	chr17	-	582	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-4	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568739	36566564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
ENSMUSG00000024454.17_38070125_38088030_1	chr18	-	1893	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	39	100	-3	-100	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCTTTCTGGGATTTTAA	NA	False	NA	0	True	AATAAA	-25	NA	38088030	38070124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUSG00000024459.19_37294675_37299629_1	chr17	-	1937	4	FSM	ENSMUSG00000024459.19	ENSMUST00000145260.2	2459	4	800	-278	308	278	multi-exon	FALSE	canonical	3	146	junction_1	46.3680924774785	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTAAGTGAGACTGGAAA	NA	False	NA	-5	True	TTTAAA	-4	NA	37299629	37294674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396
ENSMUSG00000024487.6_40338482_40352411_1	chr18	-	1724	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	71	1533	-15	-1533	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTGTGAAGTTTACTT	NA	False	NA	-6	True	ATTAAA	-15	NA	40352411	40338481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
ENSMUSG00000024487.6_40338589_40352411_1	chr18	-	1617	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	71	1640	-15	-1640	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCACTAAGTTTTTTTG	NA	False	NA	-113	True	NA	NA	NA	40352411	40338588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
ENSMUSG00000024491.17_42408437_42425161_1	chr18	+	454	3	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	0	49335	0	-7136	5prime_fragment	FALSE	canonical	3	108	junction_1	4	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAGAGGTAATATAC	NA	False	NA	NA	False	AAAAAG	-7	NA	42408436	42425161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_+_42408658_42421172_42421292_42425047
ENSMUSG00000024493.10_42335412_42395156_1	chr18	-	3828	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	103	49	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGCCATGTTATTTATT	NA	False	NA	-8	True	AATAAA	-18	NA	42395156	42335411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ENSMUSG00000024498.17_42694036_42708619_1	chr18	+	1983	8	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	49470	0	7589	0	3prime_fragment	FALSE	canonical	3	625	junction_5	65.9863931552002	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGATTGTAAATGATTAT	NA	False	NA	10	True	AATAAA	-17	NA	42694035	42708619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_+_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ENSMUSG00000024525.8_67422322_67451910_1	chr18	+	1356	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	66	3632	0	1931	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67422321	67451910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024525.8_67422322_67452165_1	chr18	+	1611	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	66	3377	0	2186	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTATCGAAGCCCACGT	NA	False	NA	9	True	ATTAAA	-16	NA	67422321	67452165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024525.8_67422449_67451910_1	chr18	+	1229	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	193	3632	127	1931	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67422448	67451910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024526.10_67476801_67500855_1	chr18	+	988	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	127	0	127	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6335	False	NA	28	True	AATAAA	-26	NA	67476800	67500855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
ENSMUSG00000024527.11_67537834_67542561_1	chr18	-	1040	3	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	39681	0	26457	0	3prime_fragment	FALSE	canonical	3	752	junction_1	12	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	6695	False	NA	-2	True	AATAAA	-31	NA	67542561	67537833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_67538585_67540335_67540531_67542467
ENSMUSG00000024527.11_67537834_67573579_1	chr18	-	2595	14	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	8663	0	-4561	0	3prime_fragment	FALSE	canonical	3	687	junction_13	36.0216897185226	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	NA	False	NA	-2	True	AATAAA	-31	NA	67573579	67537833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511
ENSMUSG00000024528.9_52598765_52623816_1	chr18	+	1469	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	1187	0	-1187	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCTTGTTTTTCTTTTT	NA	False	NA	8	True	TATAAA	-4	NA	52598764	52623816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUSG00000024528.9_52598765_52625005_1	chr18	+	2597	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	194.53691005822	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	4	True	ATTAAA	-15	NA	52598764	52625005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624856
ENSMUSG00000024537.6_67774669_67787234_1	chr18	+	1070	7	NNC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	164.271540106279	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	28	True	AATAAA	-34	NA	67774668	67787234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_67774806_67777378_67777551_67779062_67779122_67781188_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUSG00000024538.9_53539404_53551187_1	chr18	-	1828	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	375	junction_3	11.7756811551038	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_-_53540138_53542196_53542382_53544058_53544692_53550911
ENSMUSG00000024556.5_73903111_73948509_1	chr18	-	2501	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	137	0	-137	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCAGTTACATTATCT	371	False	NA	0	True	AATAAA	-20	NA	73948509	73903110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUSG00000024556.5_73903641_73948509_1	chr18	-	1971	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	667	0	-667	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACGGTGTCATCTGTGGT	371	False	NA	-4	True	AAAAAG	-15	NA	73948509	73903640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUSG00000024563.17_76374970_76438215_2	chr18	+	1951	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	319	5819	-147	-150	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCACTTCTCCGTTATTT	NA	False	NA	11	True	TATAAA	-22	NA	76374969	76438215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_76374970_76438365_1	chr18	+	2101	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	319	5669	-147	0	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATTAACTTGGAAGTCC	NA	False	NA	9	True	AATAAA	-22	NA	76374969	76438365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_76374970_76438798_1	chr18	+	2534	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	319	5236	-147	433	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACCTTTTGCCTCATTT	NA	False	NA	15	True	AATAAA	-20	NA	76374969	76438798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024576.15_61688345_61721377_1	chr18	+	2328	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	1755	0	2	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAAATTTTTTTAAA	428	False	NA	29	True	ATTAAA	-22	NA	61688344	61721377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUSG00000024580.9_61848082_61859394_1	chr18	-	1451	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	2587	0	0	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTACAGTTTATAAT	NA	False	NA	NA	False	AATAAA	-23	NA	61859394	61848081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ENSMUSG00000024580.9_61848556_61859394_1	chr18	-	977	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	3061	0	445	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTACCTGTGTTTTCA	NA	False	NA	NA	False	TTTAAA	-28	NA	61859394	61848555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ENSMUSG00000024581.14_63110932_63130311_1	chr18	+	1327	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	30	2210	0	20	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATACTTAGTCTTTTC	NA	False	NA	NA	False	AGTAAA	-9	NA	63110931	63130311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024581.14_63110932_63130432_1	chr18	+	1448	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	30	2089	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	14	True	NA	NA	NA	63110931	63130432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024583.4_63795756_63825398_1	chr18	-	2642	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	110	1591	-5	682	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCATCCTATTTGACT	NA	False	NA	-22	True	ATTAAA	-22	NA	63825398	63795755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024583.4_63797177_63825398_1	chr18	-	1221	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	110	3012	-5	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	False	NA	-7	True	AATAAA	-19	NA	63825398	63797176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024583.4_63797242_63825508_1	chr18	-	1266	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	3077	0	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGTGTTTGTAGTGTA	NA	False	NA	0	True	AATAAA	-24	NA	63825508	63797241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024587.11_64632726_64649552_1	chr18	-	2563	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	127	-3	-1	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	4178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64649552	64632725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024587.11_64633144_64649552_1	chr18	-	2145	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	127	415	-1	140	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	1770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTAGTCTTTTCCTTATT	NA	False	NA	-1	True	CATAAA	-37	NA	64649552	64633143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024587.11_64633284_64649552_1	chr18	-	2005	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	127	555	-1	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649552	64633283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024587.11_64644723_64649552_1	chr18	-	357	5	ISM	ENSMUSG00000024587.11	ENSMUST00000236392.2	935	9	17	6736	-1	4000	5prime_fragment	FALSE	canonical	3	3478	junction_4	806.901790802326	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTATTAAAAATGACCCG	NA	False	NA	NA	False	NA	NA	NA	64649552	64644722	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_-_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUSG00000024588.11_64590336_64622137_1	chr18	-	2186	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	34	4351	-3	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622137	64590335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
ENSMUSG00000024592.16_57090169_57108440_1	chr18	-	1136	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	0	1264	0	517	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACATGTGTTTTTGTAC	NA	False	NA	NA	False	TATAAA	-4	NA	57108440	57090168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
ENSMUSG00000024594.10_57487818_57522681_1	chr18	+	1678	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	5	3347	0	374	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57487817	57522681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_57506964_57522681_1	chr18	+	897	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	0	-374	0	374	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_57506964_57522681_2	chr18	+	1094	6	NNC	ENSMUSG00000024594.10	novel	523	5	NA	NA	0	374	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	427.566883656815	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57521897_57522095_57522291
ENSMUSG00000024594.10_57506964_57522681_3	chr18	+	953	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	0	374	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024603.9_60659273_60690322_1	chr18	+	2222	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	0	1516	0	-689	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCATGCCCTGTTCTATA	NA	False	NA	12	True	ATTAAA	-15	NA	60659272	60690322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
ENSMUSG00000024614.8_90528328_90560329_1	chr18	+	3499	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	50	1062	0	-1062	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTCTTTTTGAGGATA	4792	False	NA	41	True	ATTAAA	-14	NA	90528327	90560329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
ENSMUSG00000024640.10_15882494_15902313_1	chr19	-	2055	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	110	452	-19	0	multi-exon	TRUE	canonical	3	2829	junction_2	225.154079188008	3232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902313	15882493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024640.10_15882841_15902313_1	chr19	-	1708	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	110	799	-19	-347	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGTGCATGACTGTC	NA	False	NA	-4	True	AATGAA	-19	NA	15902313	15882840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024645.6_84965407_84969632_1	chr18	-	1310	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	17	1091	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGCATTTTTATTTAC	NA	False	NA	NA	False	AATAAA	-20	NA	84969632	84965406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
ENSMUSG00000024654.9_9089401_9113000_1	chr19	-	2026	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	2169	0	-2169	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGTTAGGTGTCACT	NA	False	NA	NA	False	AATAAA	-21	NA	9113000	9089400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024654.9_9090292_9113000_1	chr19	-	1135	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	3060	0	-3060	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCAGTCTGTCCCTCCTTTT	NA	False	NA	1	True	NA	NA	NA	9113000	9090291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024660.10_9849706_9876853_1	chr19	-	3128	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	62	46	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTGTGGATATTGTGA	NA	False	NA	34	True	AATAAA	-15	NA	9876853	9849705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ENSMUSG00000024666.7_10547842_10554471_1	chr19	-	1335	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	255	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1765	False	NA	-4	True	AATAAA	-15	NA	10554471	10547841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUSG00000024666.7_10547842_10554471_2	chr19	-	1450	5	NIC	ENSMUSG00000024666.7	novel	1529	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1765	False	NA	-4	True	AATAAA	-15	NA	10554471	10547841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
ENSMUSG00000024668.9_10479005_10502479_2	chr19	-	1874	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	1107	0	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502479	10479004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024668.9_10479005_10502553_1	chr19	-	1923	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.3954448053506	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502553	10479004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_10479571_10479595_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024683.7_11747755_11752167_1	chr19	+	1005	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	157	0	10	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTCTCTTTGGTCAGTT	161	False	NA	35	True	ATTAAA	-23	NA	11747754	11752167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUSG00000024725.14_18558173_18609187_1	chr19	-	1279	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	-34	1481	0	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTTGTGCTATCACT	NA	False	NA	-2	True	AATAAA	-21	NA	18609187	18558172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ENSMUSG00000024725.14_18558356_18609124_1	chr19	-	1033	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	29	1664	-20	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTAATAGTTTTTTT	NA	False	NA	-2	True	AATAAA	-34	NA	18609124	18558355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ENSMUSG00000024732.8_10919752_10926617_1	chr19	-	2083	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	13	907	-2	-907	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGACAGGTACACTGA	NA	False	NA	NA	False	AATAAA	-13	NA	10926617	10919751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUSG00000024732.8_10920164_10926617_1	chr19	-	1671	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	13	1319	-2	-1319	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926617	10920163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUSG00000024732.8_10920164_10926617_3	chr19	-	1551	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-2	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926617	10920163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
ENSMUSG00000024735.14_10872641_10882896_1	chr19	+	2145	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-137	4027	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872640	10882896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_10872737_10882896_1	chr19	+	1992	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	142	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872736	10882896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024740.11_10582951_10607186_1	chr19	+	4202	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	260	-3	0	3	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	630	False	NA	59	True	AATAAA	-19	NA	10582950	10607186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUSG00000024740.11_10602106_10607186_1	chr19	+	1788	9	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	19415	-3	-305	3	3prime_fragment	FALSE	canonical	3	3022	junction_4	211.272927749866	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	NA	False	NA	59	True	AATAAA	-19	NA	10602105	10607186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUSG00000024742.16_10176502_10181273_1	chr19	-	2182	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	159	0	-15	0	multi-exon	FALSE	canonical	3	832	junction_1	0	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2189	False	NA	NA	False	AATAAA	-14	NA	10181273	10176501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10178462_10181051
ENSMUSG00000024758.16_7403266_7460460_1	chr19	-	2655	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	107	0	107	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9146	False	NA	-18	True	AATAAA	-17	NA	7460460	7403265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000024758.16_7404383_7460637_1	chr19	-	1715	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	-70	1117	0	525	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTAACTGCTGTACAC	8969	False	NA	NA	False	AATAAA	-32	NA	7460637	7404382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000024764.11_7203038_7218399_1	chr19	-	3082	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	149	0	0	0	multi-exon	TRUE	canonical	3	441	junction_1	30.7431757816732	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218399	7203037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
ENSMUSG00000024767.12_7176211_7183635_1	chr19	-	1023	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	46	644	-36	-636	multi-exon	FALSE	canonical	3	1089	junction_1	76.373351955305	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	-7	True	ATTAAA	-18	NA	7183635	7176210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUSG00000024772.10_6326955_6348929_1	chr19	+	1956	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	200	1197	0	539	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTCTTTCTTGCCTCTTC	NA	False	NA	18	True	AATATA	-15	NA	6326954	6348929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
ENSMUSG00000024780.8_28967885_28994971_1	chr19	+	2528	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-15	2666	0	979	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGTGCTCACTGGCT	3954	False	NA	23	True	AATAAA	-17	NA	28967884	28994971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
ENSMUSG00000024785.8_29078892_29121329_1	chr19	+	1772	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	117	-86	117	0	multi-exon	FALSE	canonical	3	369	junction_1	16.9958634673264	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078891	29121329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
ENSMUSG00000024792.10_6130795_6134723_1	chr19	-	1252	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6690	False	NA	NA	False	AATAAA	-15	NA	6134723	6130794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
ENSMUSG00000024792.10_6130795_6134961_1	chr19	-	1341	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	-16	-403	-4	0	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6452	False	NA	NA	False	AATAAA	-15	NA	6134961	6130794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
ENSMUSG00000024797.15_6118020_6127230_1	chr19	-	2496	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	31	148	0	0	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTTGCCTGCAGGGGC	1018	False	NA	-3	True	AATAAA	-18	NA	6127230	6118019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ENSMUSG00000024799.17_6116159_6117857_1	chr19	-	892	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	-51	602	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	-6	True	NA	-10	True	TATAAA	-13	NA	6117857	6116158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUSG00000024800.9_36061116_36082001_2	chr19	+	984	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	-15	176	0	123	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGTGAAGCATTTTTTAA	NA	False	NA	6	True	AATAAA	-2	NA	36061115	36082001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082177_1	chr19	+	1111	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024811.12_36862885_36870280_1	chr19	+	2663	5	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	51253	597	4912	-597	3prime_fragment	FALSE	canonical	3	888	junction_3	109.879479430875	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTAGCATGGTAATT	NA	False	NA	25	True	AATAAA	-14	NA	36862884	36870280	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
ENSMUSG00000024816.13_5901314_5925267_1	chr19	-	2885	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	35	1584	0	-1584	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTCTTTCCTATCACTG	4370	False	NA	-7	True	AATAAA	-14	NA	5925267	5901313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
ENSMUSG00000024824.8_4245706_4251606_1	chr19	-	1541	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	29	511	0	-487	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCAGTCTCCTGCCT	6027	False	NA	-5	True	AATACA	-26	NA	4251606	4245705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUSG00000024826.16_5947415_5962835_1	chr19	-	2379	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	64	871	0	0	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	1336	False	NA	-26	True	AATAAA	-14	NA	5962835	5947414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
ENSMUSG00000024826.16_5956605_5962835_1	chr19	-	283	3	ISM	ENSMUSG00000024826.16	ENSMUST00000142995.8	725	4	-38	1451	0	-1040	5prime_fragment	FALSE	canonical	3	781	junction_2	34.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGCCCACCCACCTGAGG	1336	False	NA	NA	False	AAAAAG	-3	NA	5962835	5956604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_5956660_5957028_5957190_5962768
ENSMUSG00000024830.18_4206791_4213299_1	chr19	-	1731	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	54	2801	0	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTGCCGGACTC	2803	False	NA	1	True	AGTAAA	-17	NA	4213299	4206790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024833.16_5990570_6014203_1	chr19	-	2365	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1653	False	NA	0	True	AATAAA	-21	NA	6014203	5990569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
ENSMUSG00000024835.16_4198653_4204034_1	chr19	+	1846	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	402	junction_1	75.9439925208044	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024835.16_4198653_4204034_2	chr19	+	1839	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	140.317354593079	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_4198722_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024841.9_5416769_5420276_1	chr19	+	1278	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	1278	0	-1278	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	1792	False	NA	22	True	ATTAAA	-22	NA	5416768	5420276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5417050_5420276_1	chr19	+	997	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	281	1278	0	-1278	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	2073	False	NA	22	True	ATTAAA	-22	NA	5417049	5420276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5417050_5421554_1	chr19	+	2275	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	281	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	2073	False	NA	23	True	AATAAA	-40	NA	5417049	5421554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024844.16_5414668_5416391_1	chr19	-	848	3	NNC	ENSMUSG00000024844.16	novel	758	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	746	junction_2	2648	1525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8986	False	NA	-8	True	AATAAA	-15	NA	5416391	5414667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_5415187_5415845_5415985_5416201
ENSMUSG00000024844.16_5414668_5416673_1	chr19	-	753	3	NNC	ENSMUSG00000024844.16	novel	1261	3	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3021	2757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_5415187_5415845_5416002_5416595
ENSMUSG00000024844.16_5414668_5416673_2	chr19	-	736	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	523	2	-39	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	2821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416595
ENSMUSG00000024844.16_5414668_5416673_3	chr19	-	597	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	146	0	-39	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5415187_5416595
ENSMUSG00000024845.20_4175989_4181734_2	chr19	+	871	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	29	572	0	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4400	False	NA	NA	False	AATAAA	-24	NA	4175988	4181734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUSG00000024853.11_5324334_5345450_1	chr19	-	2815	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	33	374	-14	-374	multi-exon	FALSE	canonical	3	1448	junction_15	340.757138589935	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAATACAGGCGCTCTT	3899	False	NA	-28	True	AATAAA	-17	NA	5345450	5324333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000024853.11_5341232_5345439_1	chr19	-	734	5	ISM	ENSMUSG00000024853.11	ENSMUST00000235182.2	933	9	-8	3931	-3	0	5prime_fragment	FALSE	canonical	3	1668	junction_1	98.2445927265211	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGCAGAAGGGAAAAGGTG	3910	False	NA	-75	True	NA	NA	NA	5345439	5341231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000024856.11_4147401_4149011_1	chr19	+	855	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	219	6	0	1	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCAGCCTTTCTGTGT	7095	False	NA	28	True	AATAAA	-17	NA	4147400	4149011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUSG00000024878.10_24897791_24938965_1	chr19	-	1418	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	511	0	-511	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	-32	True	AGTAAA	-32	NA	24938965	24897790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUSG00000024902.6_5012391_5014976_1	chr19	+	778	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	216	2051	0	4	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGCTTCTCTCCTGAG	3759	False	NA	14	True	AATAAA	-17	NA	5012390	5014976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ENSMUSG00000024906.11_5532860_5538313_1	chr19	-	1950	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	117	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538313	5532859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ENSMUSG00000024925.12_5651915_5652964_1	chr19	+	609	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	14	503	0	2	multi-exon	FALSE	canonical	3	228	junction_3	35.9845645921816	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGTCTGTGGGCACC	5059	False	NA	6	True	AATAAA	-15	NA	5651914	5652964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
ENSMUSG00000024926.11_5653044_5660073_1	chr19	-	1960	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	192	2	-1	0	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3632	False	NA	-5	True	AATAAA	-16	NA	5660073	5653043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024926.11_5653044_5660073_2	chr19	-	1804	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	-16	-402	-1	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3632	False	NA	-5	True	AATAAA	-16	NA	5660073	5653043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024943.10_23186099_23234880_1	chr19	-	2447	19	ISM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	16302	2284	6350	0	3prime_fragment	FALSE	canonical	2	93	junction_7	107.429807689705	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGAAAGATTGGTTAT	NA	False	NA	-8	True	AATAAA	-17	NA	23234880	23186098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
ENSMUSG00000024943.10_23186099_23234880_2	chr19	-	2405	18	ISM	ENSMUSG00000024943.10	ENSMUST00000226111.2	3265	24	15083	0	6350	0	3prime_fragment	FALSE	canonical	2	185	junction_5	80.0723721085276	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGAAAGATTGGTTAT	NA	False	NA	-8	True	AATAAA	-17	NA	23234880	23186098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
ENSMUSG00000024943.10_23207668_23234880_1	chr19	-	1442	10	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	6350	-15569	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	128.249756335051	370	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTCTTTCCTGCATTTT	NA	False	NA	NA	False	AATAAA	-6	NA	23234880	23207667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
ENSMUSG00000024944.7_6184416_6191170_1	chr19	-	875	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	408	3	0	0	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	-11	True	AATAAA	-15	NA	6191170	6184415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ENSMUSG00000024944.7_6187174_6191170_1	chr19	-	712	3	ISM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	2770	0	326	5prime_fragment	FALSE	canonical	3	728	junction_2	28	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAAGACTTGTCTTGTTG	NA	False	NA	-2	True	NA	NA	NA	6191170	6187173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_6187671_6187759_6187871_6191066
ENSMUSG00000024949.18_6413952_6426067_1	chr19	+	2128	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	232	1993	0	257	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGTTGGTCTCTTATAAA	834	False	NA	42	True	AATATA	-14	NA	6413951	6426067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
ENSMUSG00000024953.18_6884074_6887023_1	chr19	-	811	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	451	0	-38	0	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6887023	6884073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUSG00000024959.15_6919932_6929261_1	chr19	+	927	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	63	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9384	False	NA	10	True	AATAAA	-15	NA	6919931	6929261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ENSMUSG00000024963.13_6965279_6969942_1	chr19	-	869	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9943	False	NA	-4	True	AATAAA	-17	NA	6969942	6965278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
ENSMUSG00000024963.13_6965279_6969942_2	chr19	-	932	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	72.0819364026491	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9943	False	NA	-4	True	AATAAA	-17	NA	6969942	6965278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969853
ENSMUSG00000024965.10_6976347_6977342_1	chr19	-	768	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19371	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8110	False	NA	-8	True	AATAAA	-17	NA	6977342	6976346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_6976889_6977006_6977149_6977258
ENSMUSG00000024968.15_7246299_7252590_1	chr19	+	2168	12	FSM	ENSMUSG00000024968.15	ENSMUST00000066646.12	2823	12	655	0	655	0	multi-exon	FALSE	canonical	3	1016	junction_11	65.835633045581	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7246298	7252590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ENSMUSG00000024969.16_7254124_7319190_1	chr19	-	2667	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3895	False	NA	NA	False	AAGAAA	-13	NA	7319190	7254123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
ENSMUSG00000024974.11_53588829_53633585_1	chr19	+	4172	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	679	0	346	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	NA	False	NA	78	True	ATTAAA	-21	NA	53588828	53633585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
ENSMUSG00000024974.11_53629552_53633585_1	chr19	+	1115	5	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	40723	679	-2237	346	3prime_fragment	FALSE	canonical	3	1084	junction_1	84.6994687114388	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	6384	False	NA	78	True	ATTAAA	-21	NA	53629551	53633585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
ENSMUSG00000024976.15_53933304_54019882_1	chr19	+	2174	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	0	-1416	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATATAAGTTTTCTTT	3925	False	NA	NA	False	AATAGA	-45	NA	53933303	54019882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024976.15_53933304_54021564_1	chr19	+	3856	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	145	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGTGTGTGGTGTTT	3925	False	NA	23	True	TATAAA	-26	NA	53933303	54021564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024981.7_55242345_55285060_1	chr19	+	2607	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	544	1092	544	950	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGCCTGCAGTCTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	55242344	55285060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
ENSMUSG00000024983.11_55304759_55612402_1	chr19	+	838	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-24	2591	0	-2591	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACATGAATCATTCTT	NA	False	NA	NA	False	GATAAA	-38	NA	55304758	55612402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ENSMUSG00000024989.16_38043490_38062872_1	chr19	+	2410	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTAGTATGTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	38043489	38062872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_38043490_38062872_2	chr19	+	2524	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTAGTATGTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	38043489	38062872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_38043490_38062872_3	chr19	+	2500	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTAGTATGTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	38043489	38062872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024991.9_60749555_60757193_1	chr19	-	2389	6	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	21888	0	3396	0	3prime_fragment	FALSE	canonical	3	1162	junction_5	125.870727335628	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	9773	False	NA	-31	True	AATAAA	-17	NA	60757193	60749554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145
ENSMUSG00000024993.16_60800029_60824673_1	chr19	+	2355	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	ATTAAA	-21	NA	60800028	60824673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024999.8_38777575_38807681_1	chr19	-	2974	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	1003	0	-1003	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCATGGTTTTTTTTTTT	2288	False	NA	-5	True	AATAAA	-24	NA	38807681	38777574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
ENSMUSG00000025001.12_38919359_38956721_1	chr19	+	3094	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	2774	0	-2774	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGTCACATTATTTT	NA	False	NA	14	True	AATAAA	-15	NA	38919358	38956721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
ENSMUSG00000025024.8_53367827_53379009_2	chr19	-	1965	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	-4	-483	0	0	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379009	53367826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025024.8_53368311_53379009_1	chr19	-	1464	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	0	484	0	0	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTAGGATGTGCGCCCC	NA	False	NA	-9	True	ATTAAA	-15	NA	53379009	53368310	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025027.19_52979611_53027001_1	chr19	-	2348	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	5130	False	NA	0	True	AATAAA	-17	NA	53027001	52979610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
ENSMUSG00000025027.19_52979611_53027001_2	chr19	-	2437	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1644	-3	-6	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	5130	False	NA	0	True	AATAAA	-17	NA	53027001	52979610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ENSMUSG00000025035.10_46519546_46561637_1	chr19	-	937	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	-105	11	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTTGAAATAGTATTAAAT	NA	False	NA	-32	True	AATAAA	-24	NA	46561637	46519545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUSG00000025036.8_46561804_46583719_1	chr19	+	1592	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	-2	1615	0	-1615	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	46561803	46583719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
ENSMUSG00000025037.7_16486075_16551897_1	chrX	+	1869	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	138	2160	138	-2160	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGATTCTGTTTTTTT	NA	False	NA	13	True	AAAAAG	-22	NA	16486074	16551897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
ENSMUSG00000025038.8_16998288_17117545_2	chrX	-	2281	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117545	16998287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025038.8_16998409_17117545_2	chrX	-	2160	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	-121	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGTTTGTATTAAATGGA	NA	False	NA	NA	False	AATAAA	-36	NA	17117545	16998408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025040.14_17422803_17438492_1	chrX	-	1911	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	72	0	0	0	multi-exon	TRUE	canonical	3	209	junction_3	21.435951110226	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438492	17422802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
ENSMUSG00000025041.18_46876791_46950747_1	chr19	-	2205	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	1523	0	-524	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTAGTCAGCCGTCTGTTG	7192	False	NA	-3	True	AATACA	-16	NA	46950747	46876790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
ENSMUSG00000025041.18_46877101_46950747_1	chr19	-	1895	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	1833	0	346	multi-exon	FALSE	canonical	3	118	junction_5	15.8666589126981	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCAGTTTTGTGTAT	7192	False	NA	-25	True	TTTAAA	-15	NA	46950747	46877100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
ENSMUSG00000025066.11_47720121_47724027_1	chr19	+	1608	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	1414	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_2	chr19	+	1600	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	915.276734108324	744	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_47720261_47721076_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_3	chr19	+	1560	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	1160	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_4	chr19	+	1552	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	915.276734108324	102	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_47720261_47721076_47721144_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_5	chr19	+	1560	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	918	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721192_47721288_47721428_47721957_47722351_47723262
ENSMUSG00000025068.9_47843469_47853006_1	chr19	+	899	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	60	223	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCAGGGCCCCACTCCTG	8528	False	NA	58	True	NA	NA	NA	47843468	47853006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUSG00000025086.14_57441366_57477342_1	chr19	+	1672	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	22	2095	0	1893	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCCTGCCTGTTCGTT	NA	False	NA	13	True	ATTAAA	-2	NA	57441365	57477342	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
ENSMUSG00000025102.15_81430031_81439217_1	chr7	-	869	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	1899	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_4	96.0325465662553	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439217	81430030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81430031_81439217_2	chr7	-	766	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	1899	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	126.089254102005	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439217	81430030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025102.15_81431930_81439217_1	chr7	-	981	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439217	81431929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81432032_81439217_1	chr7	-	879	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	-102	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81432032_81439217_2	chr7	-	776	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	9	102	0	-102	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025130.12_120451131_120463699_1	chr11	-	2474	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	7	-32	0	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	901	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCATTGTCACTGCTGCT	3747	False	NA	-11	True	AATAAA	-14	NA	120463699	120451130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
ENSMUSG00000025133.10_97130220_97190605_1	chr7	+	3187	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	57	-4	0	3	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	990	False	NA	29	True	AATAAA	-17	NA	97130219	97190605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ENSMUSG00000025134.3_120485335_120488553_1	chr11	-	839	5	ISM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	638	2388	504	0	3prime_fragment	FALSE	canonical	3	3877	junction_4	220.512329587259	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	4944	False	NA	-7	True	AATAAA	-19	NA	120488553	120485334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460
ENSMUSG00000025135.13_120489266_120496602_1	chr11	+	788	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	19	2422	0	0	multi-exon	FALSE	canonical	3	903	junction_1	470.5	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	3919	False	NA	129	True	AATAAA	-17	NA	120489265	120496602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUSG00000025135.13_120489358_120496502_1	chr11	+	596	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	111	2522	0	-100	multi-exon	FALSE	canonical	3	903	junction_1	470.5	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTGGAGGCCTCTGC	4011	False	NA	29	True	AGTAAA	-18	NA	120489357	120496502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUSG00000025135.13_120489512_120496502_1	chr11	+	708	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	154	100	154	-100	multi-exon	FALSE	canonical	3	1006	junction_1	419	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTGGAGGCCTCTGC	4165	False	NA	29	True	AGTAAA	-18	NA	120489511	120496502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUSG00000025137.16_120500913_120508695_1	chr11	-	1760	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	56	-330	0	0	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508695	120500912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_120500913_120508695_2	chr11	-	2377	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508695	120500912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025140.16_120527594_120534574_1	chr11	-	1544	9	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	0	-1056	combination_of_known_junctions	FALSE	canonical	2	46	junction_1	319.603269695415	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTAGACTACTTCCTGCT	NA	False	NA	-10	True	NA	NA	NA	120534574	120527593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUSG00000025140.16_120530242_120534574_1	chr11	-	1838	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
ENSMUSG00000025140.16_120530242_120534574_2	chr11	-	1732	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
ENSMUSG00000025140.16_120530242_120534574_3	chr11	-	1843	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_7	342.313318705635	561	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534096_120534505
ENSMUSG00000025142.19_120563882_120600273_1	chr11	+	1827	15	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	887	junction_3	60.5904619691305	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563881	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120600073_120600169
ENSMUSG00000025142.19_120564185_120600273_1	chr11	+	2084	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	243.577411833601	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564184	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120564185_120600273_2	chr11	+	1897	16	NIC	ENSMUSG00000025142.19	novel	920	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564184	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120596016_120600273_1	chr11	+	530	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	2676	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	436.370542085508	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120596015	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_120596144_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120598901_120600273_1	chr11	+	607	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	-583	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	432.921759674886	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	214	False	NA	16	True	AATAAA	-20	NA	120598900	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_120599106_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025144.18_120601769_120604564_1	chr11	-	553	4	NIC	ENSMUSG00000025144.18	novel	692	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
ENSMUSG00000025147.8_141562287_141614801_1	chr7	-	1440	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	1	-483	0	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTCTCAGCCTG	NA	False	NA	-34	True	AATAAA	-18	NA	141614801	141562286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
ENSMUSG00000025155.16_120680027_120687221_1	chr11	-	2114	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687221	120680026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
ENSMUSG00000025155.16_120680027_120687221_2	chr11	-	1834	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687221	120680026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
ENSMUSG00000025157.9_41921929_41932543_1	chr19	+	1909	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025157.9_41921929_41932543_2	chr19	+	1869	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025159.9_41932648_41969569_1	chr19	-	3457	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	27	3123	0	0	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGGCACACTCACGTGTA	NA	False	NA	-12	True	AATAAA	-12	NA	41969569	41932647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ENSMUSG00000025161.17_120839907_120849601_1	chr11	+	2242	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	2093	0	0	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839906	120849601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025162.19_120854248_120881877_1	chr11	-	1723	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	279	1673	0	226	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTTTATTGTTTCT	1055	False	NA	17	True	AAGAAA	-1	NA	120881877	120854247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025162.19_120854248_120882156_2	chr11	-	2002	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	1673	0	226	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTTTATTGTTTCT	776	False	NA	17	True	AAGAAA	-1	NA	120882156	120854247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025171.3_41970052_42023082_1	chr19	+	1679	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	-150	0	-150	0	multi-exon	FALSE	canonical	3	94	junction_1	5.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41970051	42023082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_41970448_42020327_42020556_42022027
ENSMUSG00000025173.14_121218050_121245219_1	chr11	-	2235	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	201	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245219	121218049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUSG00000025190.14_43488609_43512977_1	chr19	-	1573	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	67	418	-53	145	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAATCACCTTGCCTTC	8384	False	NA	-5	True	AATAAA	-18	NA	43512977	43488608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUSG00000025193.15_43741435_43757072_1	chr19	+	1330	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	-102	5	0	2	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTATAGTCTCAGGTT	9172	False	NA	11	True	AATAAA	-14	NA	43741434	43757072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000025203.7_44282515_44295303_1	chr19	+	5053	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	402	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1469	False	NA	22	True	AATAAA	-23	NA	44282514	44295303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
ENSMUSG00000025208.10_44993378_44994881_1	chr19	-	1288	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	110	0	-110	multi-exon	FALSE	canonical	3	460	junction_1	27.5	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGTGTTTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44994881	44993377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025208.10_44993589_44994881_1	chr19	-	1077	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	321	0	-321	multi-exon	FALSE	canonical	3	460	junction_1	27.5	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGTCATTAAGACTATA	NA	False	NA	NA	False	NA	NA	NA	44994881	44993588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025208.10_44993861_44994881_1	chr19	-	805	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	593	0	390	multi-exon	FALSE	canonical	3	460	junction_1	27.5	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGAGTCTGGAGGCTGT	NA	False	NA	-2	True	AAAACA	-3	NA	44994881	44993860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025217.16_45352190_45517733_1	chr19	+	2193	15	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	79	junction_2	163.999393353781	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45352189	45517733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_45352326_45394983_45395026_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_45352272_45517733_1	chr19	+	2177	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	82	719	0	1	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45352271	45517733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_45352272_45517733_2	chr19	+	2219	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45352271	45517733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_45505529_45517733_1	chr19	+	731	5	NNC	ENSMUSG00000025217.16	novel	2194	14	NA	NA	71582	1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	243.290335812995	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45505528	45517733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517429
ENSMUSG00000025217.16_45505529_45517733_2	chr19	+	749	5	ISM	ENSMUSG00000025217.16	ENSMUST00000224478.2	2194	14	71582	-1	71582	1	3prime_fragment	FALSE	canonical	3	590	junction_4	37.3120288914983	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45505528	45517733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025223.16_46021032_46022549_1	chr19	-	828	2	ISM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	5511	-1	768	0	3prime_fragment	FALSE	canonical	3	350	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	9023	False	NA	-30	True	ATTAAA	-21	NA	46022549	46021031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_46021781_46022470
ENSMUSG00000025232.9_59446975_59472392_1	chr9	+	1771	13	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	152	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	350.727685993311	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446974	59472392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUSG00000025232.9_59446975_59472392_2	chr9	+	1844	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	152	0	152	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446974	59472392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUSG00000025245.15_123528717_123546612_1	chr9	-	1352	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	78	2640	0	401	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAATTTATCTAATCATC	NA	False	NA	3	True	AATAAA	-21	NA	123546612	123528716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
ENSMUSG00000025245.15_123528717_123546762_1	chr9	-	1502	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	-72	2640	0	401	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAATTTATCTAATCATC	NA	False	NA	3	True	AATAAA	-21	NA	123546762	123528716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
ENSMUSG00000025264.13_149872477_149879519_1	chrX	-	1389	5	FSM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	20	2387	0	0	multi-exon	FALSE	canonical	3	302	junction_1	26.3201443765037	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879519	149872476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025264.13_149872477_149879519_2	chrX	-	1398	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	20	2386	0	0	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879519	149872476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025268.16_149589420_149595954_1	chrX	-	2150	13	NIC	ENSMUSG00000025268.16	novel	2183	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTATTGCCATTTTTG	NA	False	NA	-3	True	NA	NA	NA	149595954	149589419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
ENSMUSG00000025268.16_149589420_149595954_2	chrX	-	2233	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	749	3	0	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTATTGCCATTTTTG	NA	False	NA	-3	True	NA	NA	NA	149595954	149589419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ENSMUSG00000025271.14_149371252_149426874_1	chrX	+	1894	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	50	junction_2	10.2058806577385	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_149371252_149426874_2	chrX	+	2050	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_5	25.4287676111569	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395909_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025277.15_14413745_14466877_1	chr14	-	1497	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	-6	735	-6	-637	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTTGTTGTTGCTTCCG	NA	False	NA	-4	True	ATTAAA	-14	NA	14466877	14413744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUSG00000025277.15_14413862_14466877_1	chr14	-	1380	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	-6	852	-6	-754	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGTCTTCAAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	14466877	14413861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUSG00000025283.16_153996128_153999207_1	chrX	-	924	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	238	0	116	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999207	153996127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUSG00000025283.16_153996128_153999341_1	chrX	-	1058	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	104	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999341	153996127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUSG00000025287.16_154045501_154080504_1	chrX	+	1544	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	62	146	0	-138	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_2	chrX	+	1602	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	138	0	-138	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025290.18_24540786_24545926_1	chr14	+	512	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	1101	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	7171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540785	24545926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUSG00000025330.7_140472987_140501607_1	chr4	-	2565	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	-60	-189	-60	189	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGGCTGGCAAGATGGCT	NA	False	NA	NA	False	AATAAA	-21	NA	140501607	140472986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
ENSMUSG00000025337.11_130274572_130284271_1	chr5	-	1448	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	100	0	-25	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284271	130274571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUSG00000025337.11_130274966_130284271_1	chr5	-	1054	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	100	394	-25	280	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTCACTGCTGCGTCTG	NA	False	NA	-9	True	AATACA	-13	NA	130284271	130274965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUSG00000025351.15_128745791_128748691_1	chr10	+	847	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	223	-7	0	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	3419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	577	False	NA	35	True	ATTAAA	-27	NA	128745790	128748691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUSG00000025353.6_128654351_128657464_1	chr10	-	994	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-1	580	-1	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ENSMUSG00000025353.6_128654351_128657464_2	chr10	-	740	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	-4	-70	-1	0	multi-exon	FALSE	canonical	3	26	junction_2	430	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128657410
ENSMUSG00000025353.6_128654351_128657464_4	chr10	-	915	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	50	-241	-1	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ENSMUSG00000025354.6_128641423_128653383_1	chr10	+	2388	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	0	1745	0	11	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTAAATTGTTCACTCA	4016	False	NA	18	True	AAAAAG	-6	NA	128641422	128653383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025354.6_128641423_128654018_1	chr10	+	3023	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	0	1110	0	646	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACATCTTCCTTCTCTTC	4016	False	NA	NA	False	TATAAA	-15	NA	128641422	128654018	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025358.17_128537004_128540903_1	chr10	-	1003	5	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-4	3191	-3	225	5prime_fragment	FALSE	canonical	3	1015	junction_2	105.157025442906	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGAGTGAGCTCAATC	8244	False	NA	NA	False	NA	NA	NA	128540903	128537003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUSG00000025359.11_128541049_128555993_1	chr10	+	2143	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	0	-114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128541048	128555993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUSG00000025362.7_128460406_128462393_1	chr10	-	458	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	223	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	15925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
ENSMUSG00000025364.14_128394508_128401880_1	chr10	-	1636	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-24	871	-24	-871	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8668	False	NA	-13	True	AATAAA	-15	NA	128401880	128394507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUSG00000025373.15_128247615_128274625_1	chr10	+	1562	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	1582	0	-661	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCAGGGTAGAGTGAGGC	315	False	NA	NA	False	AAGAAA	-16	NA	128247614	128274625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
ENSMUSG00000025381.4_128158328_128163056_1	chr10	+	1017	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	366	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158327	128163056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158414_128163056_1	chr10	+	931	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	86	366	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158413	128163056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158414_128163056_2	chr10	+	874	6	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	1028.12695714099	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158413	128163056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_128158588_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158590_128163056_1	chr10	+	755	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	262	366	-126	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158589	128163056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025393.13_127919175_127926142_1	chr10	+	1765	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	33	118	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	8582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025395.15_127851065_127865736_1	chr10	+	1392	13	FSM	ENSMUSG00000025395.15	ENSMUST00000178041.8	1536	13	28	116	0	2	multi-exon	FALSE	non_canonical	0	0	junction_7	189.963593003151	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTCAATCCTTGAAGC	1008	False	NA	25	True	AATAAA	-18	NA	127851064	127865736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859448_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025395.15_127851065_127865861_1	chr10	+	1356	12	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	0	9	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	204.658958406903	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	1008	False	NA	11	True	AATAAA	-21	NA	127851064	127865861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_127851221_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025403.6_127352992_127358255_1	chr10	-	2222	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127352992_127358255_2	chr10	-	2213	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353186_127358255_1	chr10	-	2019	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353186_127358255_2	chr10	-	2044	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	194	0	-178	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353186_127358255_3	chr10	-	2053	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	178	0	-178	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353186_127358255_4	chr10	-	2028	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353490_127358255_1	chr10	-	1749	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	482	0	112	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353490_127358255_2	chr10	-	1724	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353490_127358255_3	chr10	-	1715	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353490_127358255_4	chr10	-	1740	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	498	0	112	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025408.16_127126662_127132157_1	chr10	+	823	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	-223	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126661	127132157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127126761_127131189_127131348_127131591
ENSMUSG00000025410.11_127102256_127117676_1	chr10	+	1641	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	143	0	-143	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCTGTGTTCCTGGA	9216	False	NA	23	True	ATTAAA	-18	NA	127102255	127117676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUSG00000025421.16_77031823_77058597_1	chr18	+	1036	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	35	4406	0	-504	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGAGCTGAGATTTTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	77031822	77058597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025421.16_77031823_77059101_1	chr18	+	1540	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	35	3902	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031822	77059101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025421.16_77032080_77059101_1	chr18	+	1629	7	FSM	ENSMUSG00000025421.16	ENSMUST00000150990.9	3126	7	0	1497	0	0	multi-exon	FALSE	canonical	0	0	junction_2	156.505235979148	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77032079	77059101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77032228_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025423.17_77126125_77234497_1	chr18	+	1921	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	-136	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6306	False	NA	7	True	AATAAA	-17	NA	77126124	77234497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126125_77240815_1	chr18	+	2365	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	2	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	341.46650267483	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATTAAAGATGTA	6306	False	NA	15	True	AATAAA	-28	NA	77126124	77240815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_77126251_77234497_1	chr18	+	2150	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-136	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6432	False	NA	7	True	AATAAA	-17	NA	77126250	77234497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77234497_2	chr18	+	2122	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-136	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	397.186734137922	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6432	False	NA	7	True	AATAAA	-17	NA	77126250	77234497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126373_77126400_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77234633_2	chr18	+	2286	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	0	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	6432	False	NA	19	True	ATTAAA	-31	NA	77126250	77234633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77240815_1	chr18	+	2566	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	362.40677900584	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATTAAAGATGTA	6432	False	NA	15	True	AATAAA	-28	NA	77126250	77240815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126373_77126400_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_77126251_77240815_2	chr18	+	2594	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	2	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATTAAAGATGTA	6432	False	NA	15	True	AATAAA	-28	NA	77126250	77240815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_77126251_77241131_1	chr18	+	2882	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	362.40677900584	274	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTATGTTTAAGAATACT	6432	False	NA	17	True	AGTAAA	-25	NA	77126250	77241131	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126373_77126400_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_77126251_77241131_2	chr18	+	2910	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	99	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	288	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTATGTTTAAGAATACT	6432	False	NA	17	True	AGTAAA	-25	NA	77126250	77241131	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025428.16_77861692_77870103_1	chr18	+	1742	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	263	466	0	-252	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTGGTTTTGTCAT	NA	False	NA	15	True	CATAAA	-21	NA	77861691	77870103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025428.16_77861692_77870212_1	chr18	+	1851	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	263	357	0	-143	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	4553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	27	True	AATAAA	-15	NA	77861691	77870212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025428.16_77861692_77870569_1	chr18	+	2208	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	263	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	7870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861691	77870569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025464.16_139705621_139714247_1	chr7	+	1714	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	51	2890	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	22	True	CATAAA	-14	NA	139705620	139714247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
ENSMUSG00000025465.14_139686004_139696335_1	chr7	-	1122	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	54	381	0	-373	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGATTTTTTTTTA	NA	False	NA	-2	True	NA	NA	NA	139696335	139686003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUSG00000025465.14_139686148_139696335_1	chr7	-	978	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	54	525	0	-517	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAGTGTCGGCCACAGTT	NA	False	NA	-2	True	AATAAA	-14	NA	139696335	139686147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUSG00000025466.20_139679383_139681889_1	chr7	-	732	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1936	False	NA	0	True	NA	NA	NA	139681889	139679382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ENSMUSG00000025466.20_139679383_139682245_1	chr7	-	802	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
ENSMUSG00000025466.20_139679383_139682245_2	chr7	-	873	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	171.429752376885	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681922
ENSMUSG00000025470.12_139616325_139620514_1	chr7	+	1016	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	185	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	18	True	AATAAA	-15	NA	139616324	139620514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
ENSMUSG00000025474.10_139575909_139616303_1	chr7	-	2833	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	279	-52	0	0	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616303	139575908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
ENSMUSG00000025474.10_139575909_139616303_2	chr7	-	3084	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	-124	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616303	139575908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ENSMUSG00000025480.6_140357142_140367767_1	chr7	-	1399	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367767	140357141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
ENSMUSG00000025481.13_140415033_140417879_1	chr7	+	696	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	102	-79	102	0	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415032	140417879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
ENSMUSG00000025484.10_140433307_140436159_1	chr7	-	1405	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	863	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	2.62466929133727	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCTCTATGTCTGTGT	NA	False	NA	-10	True	CATAAA	-31	NA	140436159	140433306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
ENSMUSG00000025485.14_140437335_140443056_1	chr7	+	2354	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	465	587	0	0	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTTTAACATTCATGAT	NA	False	NA	9	True	ATTAAA	-16	NA	140437334	140443056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUSG00000025486.18_140443583_140461740_1	chr7	-	1366	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461740	140443582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ENSMUSG00000025486.18_140443583_140461740_2	chr7	-	1280	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	76.8188706561668	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461740	140443582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140457965_140461675
ENSMUSG00000025487.16_140462327_140478555_1	chr7	+	1543	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	446	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462326	140478555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
ENSMUSG00000025491.15_140547953_140549738_1	chr7	+	620	3	NNC	ENSMUSG00000025491.15	novel	736	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	552	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_140548037_140548152_140548352_140549401
ENSMUSG00000025494.9_140671088_140676754_1	chr7	-	2073	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-102	0	intron_retention	TRUE	canonical	3	90	junction_8	21.1527185014125	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676754	140671087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025494.9_140671088_140676754_2	chr7	-	1772	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-102	0	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676754	140671087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025495.16_140711214_140736067_1	chr7	+	2157	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	15	1452	0	552	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6825	False	NA	11	True	AATAAA	-16	NA	140711213	140736067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ENSMUSG00000025495.16_140714506_140736067_1	chr7	+	2079	12	NNC	ENSMUSG00000025495.16	novel	408	3	NA	NA	2040	552	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	84.6823915463925	368	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	NA	False	NA	11	True	AATAAA	-16	NA	140714505	140736067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_140714645_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ENSMUSG00000025508.14_141027582_141031262_1	chr7	+	429	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	299	236	0	0	multi-exon	FALSE	canonical	3	11307	junction_1	1806.73116428538	12716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025508.14_141027582_141031262_2	chr7	+	410	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	6078.86463494623	1607	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_141027602_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025509.16_141035119_141040005_1	chr7	+	1966	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	8	651	0	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCTCACTTCTGCAT	9953	False	NA	17	True	AATAAA	-18	NA	141035118	141040005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025511.16_141061977_141073335_1	chr7	+	1626	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	0	-469	0	1	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACTGAGGAAGTTCTTT	654	False	NA	40	True	NA	NA	NA	141061976	141073335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUSG00000025512.16_141075262_141119732_1	chr7	-	1972	13	FSM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	-3	2213	0	0	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGACCTACTTATTTCT	NA	False	NA	-22	True	NA	NA	NA	141119732	141075261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
ENSMUSG00000025525.13_111221063_111282127_1	chrX	+	1002	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	32	325	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAGTGGTAAAATCATAA	NA	False	NA	8	True	AATAAA	-16	NA	111221062	111282127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUSG00000025532.14_130058184_130089630_1	chr5	+	1344	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	41	-454	0	0	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058183	130089630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
ENSMUSG00000025533.16_130040345_130053186_1	chr5	-	1739	16	FSM	ENSMUSG00000025533.16	ENSMUST00000160129.8	2413	16	674	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	47.1472398155207	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053186	130040344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
ENSMUSG00000025533.16_130040345_130053186_2	chr5	-	1542	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	36	246	0	0	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053186	130040344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
ENSMUSG00000025534.18_130017852_130031708_1	chr5	-	2505	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	182	0	-2	0	multi-exon	TRUE	canonical	3	83	junction_6	16.6092675514317	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031708	130017851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025534.18_130028440_130031708_1	chr5	-	1100	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	-2	940	-2	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031708	130028439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025538.16_129875852_129892273_1	chr5	+	1621	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	25	618	0	0	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875851	129892273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025538.16_129875852_129892273_2	chr5	+	1464	8	NIC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	161.455749924471	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875851	129892273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_129875928_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025544.14_122344450_122396182_1	chr14	+	2273	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	834	0	54	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTTTTGTGACTACCT	NA	False	NA	15	True	AATAAA	-20	NA	122344449	122396182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUSG00000025544.14_122344450_122396745_1	chr14	+	2836	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	271	0	-271	multi-exon	FALSE	canonical	3	817	junction_12	125.603480743967	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	31	True	AATAAA	-16	NA	122344449	122396745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUSG00000025545.11_122419116_122615610_1	chr14	+	971	5	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	24036	0	-24029	5prime_fragment	FALSE	canonical	3	648	junction_1	14.6180539060437	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGGGTCTACTCG	NA	False	NA	15	True	AATAAA	-28	NA	122419115	122615610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195
ENSMUSG00000025545.11_122514914_122639646_1	chr14	+	1235	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19461	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122514913	122639646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025574.14_117706352_117716673_1	chr11	-	1105	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	399.354178643469	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUSG00000025574.14_117706352_117716673_2	chr11	-	1195	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	245	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUSG00000025574.14_117706352_117716673_3	chr11	-	1163	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
ENSMUSG00000025580.16_119179189_119190738_1	chr11	-	1332	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	177	0	102	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190738	119179188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025591.7_66928995_66939173_1	chr8	-	1161	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	-24	2013	0	-2013	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTTAGTCTGCTT	NA	False	NA	97	True	AATACA	-1	NA	66939173	66928994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
ENSMUSG00000025591.7_66928995_66939173_2	chr8	-	1105	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-2	3225	0	-2013	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTTAGTCTGCTT	NA	False	NA	97	True	AATACA	-1	NA	66939173	66928994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUSG00000025591.7_66929107_66939173_1	chr8	-	1049	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	-24	2125	0	-2125	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939173	66929106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
ENSMUSG00000025591.7_66929107_66939173_2	chr8	-	993	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-2	3337	0	-2125	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939173	66929106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUSG00000025609.16_31375780_31484905_1	chr6	+	2444	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	110	8841	0	2	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	19	True	AATAAA	-27	NA	31375779	31484905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ENSMUSG00000025613.14_87280763_87292747_1	chr16	-	1831	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	14	549	0	113	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	4641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87292747	87280762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUSG00000025616.15_87251915_87280186_1	chr16	+	2662	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	324	219	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACTATAAATTATGTTC	NA	False	NA	NA	False	AATAAA	-4	NA	87251914	87280186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025616.15_87251915_87280405_1	chr16	+	2881	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	324	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251914	87280405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025626.17_52001143_52042882_1	chrX	+	1412	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	2938	0	-1960	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCGACTCTTAGATCCT	NA	False	NA	10	True	AATAAA	-18	NA	52001142	52042882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
ENSMUSG00000025630.9_52077014_52110107_1	chrX	+	860	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	429	0	-429	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAATGTTACTGTTTTAT	NA	False	NA	27	True	AGTAAA	-20	NA	52077013	52110107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUSG00000025647.17_108884016_108886792_1	chr9	+	1470	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	85	-517	0	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108884015	108886792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025666.17_80114304_80139502_1	chrX	+	2049	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	-18	1976	0	165	multi-exon	TRUE	canonical	3	148	junction_2	10.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTAAAAGTCTCAGTAGA	NA	False	NA	NA	False	AATAAA	-25	NA	80114303	80139502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUSG00000025722.17_80541009_80550982_1	chr7	-	1541	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	35	538	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025724.13_80565125_80597293_1	chr7	-	1110	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	235	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1620	False	NA	-5	True	AATAAA	-18	NA	80597293	80565124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025724.13_80565314_80597293_1	chr7	-	921	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	235	189	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCAGTGTTTGTAT	1620	False	NA	-11	True	ATTAAA	-11	NA	80597293	80565313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025726.12_80791606_80820164_1	chr7	+	1981	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27008	0	27008	0	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	11	True	AATAAA	-20	NA	80791605	80820164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025728.17_26145401_26160909_1	chr17	-	3054	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	113	6	0	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26160909	26145400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ENSMUSG00000025731.17_26094474_26096134_1	chr17	+	808	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	426	9	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7194	False	NA	30	True	AATAAA	-31	NA	26094473	26096134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ENSMUSG00000025742.6_166131425_166165706_1	chrX	-	1553	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	39	2107	0	-2107	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTTTTTTTCTTAA	NA	False	NA	-3	True	NA	NA	NA	166165706	166131424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUSG00000025745.13_30324424_30359975_1	chr5	-	2710	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	185	1122	-1	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359975	30324423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUSG00000025745.13_30324424_30360160_1	chr5	-	2895	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	0	1122	0	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30360160	30324423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUSG00000025747.13_30264282_30278579_1	chr5	-	1073	8	NNC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	0	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	649.653502622273	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCTTAAAAGGCACTTAT	NA	False	NA	NA	False	NA	NA	NA	30278579	30264281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_30264347_30265943_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025747.13_30265816_30278633_1	chr5	-	1190	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	-18	1991	-18	246	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	1348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCAATGGGCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30278633	30265815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025764.15_41510166_41568695_1	chr3	+	2877	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	0	2604	0	202	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	TATAAA	-8	NA	41510165	41568695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ENSMUSG00000025794.10_120400580_120403501_1	chr9	+	720	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	70	219	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	8939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025817.13_5849830_5873551_2	chr2	+	1611	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	595	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1702	False	NA	NA	False	NA	NA	NA	5849829	5873551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873551_1	chr2	+	1447	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	90	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873551_2	chr2	+	1460	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	330.348002066209	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_5850197_5852918_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873551_4	chr2	+	1366	9	NIC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	49	junction_7	223.812107302085	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ENSMUSG00000025856.16_138962143_138980708_1	chr5	-	1602	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	84	374	0	128	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTATTTCTGATGCGCC	NA	False	NA	-13	True	AATAAA	-18	NA	138980708	138962142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ENSMUSG00000025869.12_54732558_54737871_1	chr13	-	1164	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	32	560	0	-209	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTGTGTTTACTGTGC	NA	False	NA	-2	True	ATTAAA	-16	NA	54737871	54732557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUSG00000025869.12_54732647_54737887_1	chr13	-	1091	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	16	649	-16	-298	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGACTAGGTGGGTTTTTG	NA	False	NA	-24	True	GATAAA	-21	NA	54737887	54732646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUSG00000025871.19_54699031_54713169_1	chr13	-	2619	10	NNC	ENSMUSG00000025871.19	novel	2727	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	170.539521504728	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713169	54699030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_54699900_54699928_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ENSMUSG00000025872.6_54607651_54616639_1	chr13	-	1311	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	23	1001	0	-1001	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACCAAACCAAAAAACCAAA	NA	False	NA	NA	False	TATAAA	-30	NA	54616639	54607650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ENSMUSG00000025872.6_54607651_54616639_2	chr13	-	1382	6	NIC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-1001	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	215.338802820114	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACCAAACCAAAAAACCAAA	NA	False	NA	NA	False	TATAAA	-30	NA	54616639	54607650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614269_54615638_54615796_54616353
ENSMUSG00000025873.17_54769637_54809406_3	chr13	+	1812	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	40	2470	0	7	multi-exon	FALSE	canonical	0	0	junction_3	132.701770900015	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCTGACTTAGGTGTAT	NA	False	NA	8	True	NA	NA	NA	54769636	54809406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025878.17_55176108_55248067_1	chr13	-	2475	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	46	415	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248067	55176107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025878.17_55225078_55248067_1	chr13	-	561	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	45	2129	0	192	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTCCATGTTGCTGATT	NA	False	NA	NA	False	AATAAA	-22	NA	55248067	55225077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025894.12_4295957_4309469_1	chr9	-	1647	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	1163	0	-992	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCGTCTTAGGGTTTC	-1	True	NA	43	True	AGTAAA	-22	NA	4309469	4295956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
ENSMUSG00000025894.12_4296037_4309469_1	chr9	-	1439	5	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1072	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	348.214732600446	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCATCGACTCAGATGA	-1	True	NA	-37	True	CATAAA	-42	NA	4309469	4296036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308733_4308920_4309253
ENSMUSG00000025894.12_4296037_4309469_2	chr9	-	1601	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	-2	1244	0	-1072	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCATCGACTCAGATGA	-1	True	NA	-37	True	CATAAA	-42	NA	4309469	4296036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025894.12_4296613_4309469_2	chr9	-	1025	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	-2	1820	0	-1648	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025894.12_4296613_4309469_4	chr9	-	1359	5	ISM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	1819	0	-1648	intron_retention	FALSE	canonical	3	643	junction_4	110.637640520756	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693
ENSMUSG00000025894.12_4296613_4309469_5	chr9	-	903	5	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	350.365077454931	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309253
ENSMUSG00000025894.12_4296613_4309469_6	chr9	-	677	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
ENSMUSG00000025898.7_3404088_3479130_1	chr9	+	3844	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	496	106	0	-106	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTACTGAATCTGTAGCAT	9	True	NA	15	True	TATAAA	-16	NA	3404087	3479130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
ENSMUSG00000025903.15_4878011_4916962_1	chr1	+	2440	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	-123	-1387	0	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878010	4916962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ENSMUSG00000025917.10_10094826_10108170_1	chr1	-	1516	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	182	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108170	10094825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUSG00000025917.10_10095068_10108170_2	chr1	-	1282	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_7	313.343653036022	981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108170	10095067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107886
ENSMUSG00000025917.10_10095068_10108393_1	chr1	-	1248	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108393	10095067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
ENSMUSG00000025925.15_15875870_15913694_1	chr1	+	1686	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	582	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875869	15913694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUSG00000025934.16_21327102_21335437_1	chr1	+	998	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3357	192	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	37	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327101	21335437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ENSMUSG00000025935.11_13636442_13660099_1	chr1	-	1383	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	35	1520	0	-1520	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCTGTTGTCCTGTTC	9691	False	NA	-5	True	AATACA	-16	NA	13660099	13636441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
ENSMUSG00000025937.7_13695069_13730770_1	chr1	-	2979	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	1515	0	-1515	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730770	13695068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696117_13730770_1	chr1	-	1931	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	2563	0	-2563	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTGTATGAATATTT	NA	False	NA	35	True	TTTAAA	-40	NA	13730770	13696116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696976_13730770_3	chr1	-	1072	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	3422	0	3243	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025939.20_16640357_16689492_1	chr1	-	1609	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	221	351	-9	-351	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGACATTTTTATTT	NA	False	NA	NA	False	AATACA	-32	NA	16689492	16640356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16640357_16689492_2	chr1	-	1530	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-9	-351	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGACATTTTTATTT	NA	False	NA	NA	False	AATACA	-32	NA	16689492	16640356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025940.7_16735460_16748041_1	chr1	+	1226	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	26	458	0	-378	multi-exon	FALSE	canonical	3	512	junction_1	10.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAAAATGTGGATGGTC	NA	False	NA	6	True	AATAAA	-17	NA	16735459	16748041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUSG00000025950.17_65197775_65218232_1	chr1	-	2194	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	108	0	108	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218232	65197774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
ENSMUSG00000025956.11_64646246_64656361_1	chr1	-	1376	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	40	614	-18	-607	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAACTTGTAGGTTAGAA	NA	False	NA	1	True	AATAAA	-25	NA	64656361	64646245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUSG00000025962.16_63769800_63791625_1	chr1	+	2270	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	27	2189	0	1	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGATCAGCTGGCTGA	NA	False	NA	6	True	AATAAA	-17	NA	63769799	63791625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ENSMUSG00000025967.17_63215984_63218815_1	chr1	+	1109	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	830	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	3727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63215983	63218815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025967.17_63216289_63218815_1	chr1	+	804	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	305	830	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	3628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025968.17_63182755_63215849_1	chr1	-	2529	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	132	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ENSMUSG00000025968.17_63182755_63215849_2	chr1	-	2687	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	42	-139	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ENSMUSG00000025968.17_63182755_63215849_3	chr1	-	2633	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_19	199.298478811329	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
ENSMUSG00000025968.17_63182755_63215849_4	chr1	-	2791	20	NIC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_19	206.17340683078	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
ENSMUSG00000025971.7_57445918_57455064_1	chr1	+	1061	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	431	2048	0	-2048	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTAGTGTTCTTTAAA	NA	False	NA	10	True	AATAAA	-13	NA	57445917	57455064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
ENSMUSG00000025979.14_55170446_55192235_1	chr1	+	961	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	1823	0	77	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGCTAAACAATCATTGG	NA	False	NA	13	True	AATAAA	-21	NA	55170445	55192235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025979.14_55170446_55192949_1	chr1	+	1675	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	1109	0	-148	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTGTATTAATTTTATT	NA	False	NA	NA	False	ATTAAA	-15	NA	55170445	55192949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025979.14_55170446_55193261_1	chr1	+	1987	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	797	0	164	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55170445	55193261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025980.15_55116994_55126995_1	chr1	-	2235	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	188	0	188	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	2351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4643	False	NA	-6	True	AATAAA	-16	NA	55126995	55116993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025980.15_55116994_55127183_1	chr1	-	2213	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	2340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ENSMUSG00000025980.15_55117207_55126995_1	chr1	-	2022	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	188	213	188	-213	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGGTGCAAGAGCCATA	4643	False	NA	-17	True	AATAAA	-20	NA	55126995	55117206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025982.14_55026182_55066554_1	chr1	-	4255	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	86	1854	-1	-1850	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	0	True	AATAAA	-22	NA	55066554	55026181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUSG00000025982.14_55042310_55066554_1	chr1	-	1521	11	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	86	17982	-1	0	5prime_fragment	FALSE	canonical	3	1138	junction_7	128.097970319596	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066554	55042309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUSG00000025995.17_45834667_45862779_1	chr1	+	2612	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	341	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834666	45862779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ENSMUSG00000026000.17_67042534_67078001_1	chr1	-	1363	10	NIC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	146.548774167089	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078001	67042533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
ENSMUSG00000026000.17_67042534_67078001_2	chr1	-	1573	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	30	2858	-8	0	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078001	67042533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
ENSMUSG00000026005.16_66740066_66757578_1	chr1	+	1230	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	76	1386	0	400	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGAAGCCTAGGGTTTC	NA	False	NA	5	True	ATTAAA	-16	NA	66740065	66757578	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_66740066_66758669_1	chr1	+	2310	6	NIC	ENSMUSG00000026005.16	novel	2713	7	NA	NA	0	-295	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	305.506530208439	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66740065	66758669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_66740177_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_66740066_66758669_2	chr1	+	2321	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	76	295	0	-295	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66740065	66758669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026019.16_60116852_60137067_1	chr1	-	2104	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	0	7908	0	-825	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTACATTTTACCCT	NA	False	NA	-32	True	TATAAA	-24	NA	60137067	60116851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
ENSMUSG00000026019.16_60116852_60137334_1	chr1	-	1956	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	470	825	-29	-825	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTACATTTTACCCT	NA	False	NA	-32	True	TATAAA	-24	NA	60137334	60116851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ENSMUSG00000026019.16_60117302_60137067_1	chr1	-	1654	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	0	8358	0	-1275	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	-22	True	AATGAA	-15	NA	60137067	60117301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
ENSMUSG00000026019.16_60117302_60137334_1	chr1	-	1506	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	470	1275	-29	-1275	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	-22	True	AATGAA	-15	NA	60137334	60117301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ENSMUSG00000026019.16_60117302_60137334_3	chr1	-	1604	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	-29	1275	-29	-1275	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	-22	True	AATGAA	-15	NA	60137334	60117301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
ENSMUSG00000026020.10_59724144_59750669_1	chr1	+	1997	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-24	7534	0	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_59724144_59750669_2	chr1	+	2114	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	590.490628394916	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_59724144_59750669_3	chr1	+	1889	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	54	junction_13	512.353772070727	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748235_59749700_59749812_59750429
ENSMUSG00000026021.16_59678593_59709993_1	chr1	-	1312	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_4	1439.42688595149	1768	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_59679428_59681576_59681649_59683675_59683754_59691930_59692028_59694616_59694692_59709838
ENSMUSG00000026021.16_59678593_59709993_2	chr1	-	1210	5	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	162	junction_3	1398.18192217608	1748	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_59679428_59681576_59681649_59683675_59683749_59694616_59694692_59709838
ENSMUSG00000026021.16_59678700_59709915_1	chr1	-	1030	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	78	107	-17	-107	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGCTTTTGATTCTGT	667	False	NA	-8	True	AATAAA	-28	NA	59709915	59678699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUSG00000026032.9_58625758_58635123_1	chr1	+	548	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	215	0	215	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625757	58635123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUSG00000026035.16_58470156_58484645_1	chr1	-	818	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
ENSMUSG00000026036.18_58484787_58500684_1	chr1	+	1361	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	477	1931	0	141	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTTCTTGGT	NA	False	NA	17	True	ATTAAA	-17	NA	58484786	58500684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026037.15_58502352_58544086_1	chr1	-	2957	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	182	422	-2	-422	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGTCTGCACTTTGC	NA	False	NA	3	True	AATAAA	-21	NA	58544086	58502351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026037.15_58502352_58544086_2	chr1	-	2951	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-2	-422	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGTCTGCACTTTGC	NA	False	NA	3	True	AATAAA	-21	NA	58544086	58502351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ENSMUSG00000026037.15_58502631_58544086_2	chr1	-	2678	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	182	701	-2	-701	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACATTTTCTATTTTC	NA	False	NA	-5	True	AATAAA	-21	NA	58544086	58502630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026037.15_58503138_58544086_1	chr1	-	2165	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-2	225	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	-14	True	GATAAA	-16	NA	58544086	58503137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ENSMUSG00000026037.15_58503138_58544086_2	chr1	-	2171	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	182	1208	-2	225	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	-14	True	GATAAA	-16	NA	58544086	58503137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026037.15_58536086_58544086_1	chr1	-	992	5	ISM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	182	34156	-2	3419	5prime_fragment	FALSE	canonical	3	463	junction_4	49.266494699745	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTTAGT	NA	False	NA	NA	False	NA	NA	NA	58544086	58536085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026047.14_44146047_44157925_1	chr1	-	1975	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	43	341	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCTGTTTTGTTACAG	NA	False	NA	-7	True	AATAAA	-15	NA	44157925	44146046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUSG00000026049.12_44125776_44141583_1	chr1	-	1121	6	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	156.042814637522	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141487
ENSMUSG00000026049.12_44125776_44141583_2	chr1	-	1179	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	0	-244	0	0	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
ENSMUSG00000026049.12_44125776_44141583_3	chr1	-	1187	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	18	-245	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ENSMUSG00000026049.12_44125776_44141583_4	chr1	-	1245	7	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
ENSMUSG00000026078.11_39026922_39035526_1	chr1	+	888	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	793	0	-201	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTGGAACTCTTTAATT	NA	False	NA	NA	False	AAGAAA	-1	NA	39026921	39035526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026078.11_39026922_39035727_1	chr1	+	1089	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	592	0	0	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAGTGCAAAAAATGAGA	NA	False	NA	NA	False	AATAAA	-26	NA	39026921	39035727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026078.11_39026922_39036320_1	chr1	+	1682	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	-1	0	1	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGTAAGATTTATTT	NA	False	NA	4	True	AATACA	-14	NA	39026921	39036320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026083.13_38037091_38061296_1	chr1	+	1466	6	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-119	29806	0	-23225	5prime_fragment	FALSE	canonical	3	510	junction_5	62.9558575511445	790	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAACGGTTAAAAAAA	1289	False	NA	NA	False	NA	NA	NA	38037090	38061296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244
ENSMUSG00000026083.13_38037210_38061296_1	chr1	+	1347	6	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	0	29806	0	-23225	5prime_fragment	FALSE	canonical	3	510	junction_5	62.9558575511445	789	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAACGGTTAAAAAAA	1408	False	NA	NA	False	NA	NA	NA	38037209	38061296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244
ENSMUSG00000026087.12_37929624_37937419_1	chr1	+	706	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	66	197	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	20	True	ATTAAA	-20	NA	37929623	37937419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026088.16_37917969_37929357_1	chr1	-	1096	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	135	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929357	37917968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUSG00000026096.15_53352813_53365326_1	chr1	+	1662	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	30	176	0	0	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352812	53365326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026111.16_37469267_37478068_1	chr1	+	1261	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	16	137	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469266	37478068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026111.16_37469267_37478068_2	chr1	+	1105	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469266	37478068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026112.8_37459405_37469113_1	chr1	-	552	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	71	3240	-32	-3240	multi-exon	FALSE	canonical	3	395	junction_2	27.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGACTCTTCGATCAGAT	6343	False	NA	-7	True	AATGAA	-15	NA	37469113	37459404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUSG00000026127.14_34478932_34484040_1	chr1	+	1439	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	0	4397	0	445	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCGTCTATTCCCTGCC	5613	False	NA	15	True	NA	NA	NA	34478931	34484040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ENSMUSG00000026127.14_34478932_34493588_1	chr1	+	901	9	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	0	5151	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_8	171.809305626907	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCAGTGGCCTCTCT	5613	False	NA	NA	False	NA	NA	NA	34478931	34493588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34493524
ENSMUSG00000026142.16_82294363_82423087_1	chr1	+	3446	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	190	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	14	True	AATAAA	-20	NA	82294362	82423087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
ENSMUSG00000026150.15_82702639_82729502_1	chr1	+	1038	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	53	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702638	82729502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82729502_2	chr1	+	1098	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	-22	569	0	53	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702638	82729502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82730111_1	chr1	+	1647	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702638	82730111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026174.10_74545494_74568616_1	chr1	+	1606	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	277	1385	275	1280	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTCTGACAGACCGATA	1137	False	NA	19	True	AATAAA	-21	NA	74545493	74568616	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUSG00000026174.10_74545494_74570001_1	chr1	+	2991	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	277	0	275	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	1137	False	NA	38	True	AATAAA	-23	NA	74545493	74570001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUSG00000026179.15_74324213_74326613_1	chr1	+	616	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	124	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324212	74326613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74324297_74325000_74325170_74326250
ENSMUSG00000026187.10_72346692_72434112_1	chr1	+	2444	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	106	-1	106	1	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	428	False	NA	23	True	TATAAA	-29	NA	72346691	72434112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ENSMUSG00000026189.14_72298331_72323418_1	chr1	-	883	6	NIC	ENSMUSG00000026189.14	novel	1120	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	98.9432160382914	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323418	72298330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72316445_72316580_72323251
ENSMUSG00000026192.14_71596338_71618563_1	chr1	+	2589	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	29	227	0	-227	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	14	True	AATAAA	-14	NA	71596337	71618563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUSG00000026197.13_75145290_75148273_1	chr1	+	1105	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ENSMUSG00000026201.13_75187482_75190886_1	chr1	+	1512	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	1364	0	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_75187482_75190886_2	chr1	+	1484	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026202.14_75191616_75195897_1	chr1	-	2055	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	41	744	-10	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGCTTTCTTTTGGC	NA	False	NA	-2	True	ATTAAA	-20	NA	75195897	75191615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
ENSMUSG00000026202.14_75192256_75195897_2	chr1	-	1648	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	-10	-823	-10	0	multi-exon	FALSE	canonical	3	248	junction_1	30.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTCACTGTGTTT	NA	False	NA	-77	True	NA	NA	NA	75195897	75192255	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75193620_75193855_75194079_75195836
ENSMUSG00000026209.16_75285209_75293637_1	chr1	-	1706	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	156	0	0	0	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293637	75285208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
ENSMUSG00000026209.16_75285209_75294114_1	chr1	-	1652	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	167	669	-23	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75294114	75285208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUSG00000026209.16_75285209_75294281_1	chr1	-	1819	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	0	669	0	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75294281	75285208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUSG00000026223.16_85822340_85836406_1	chr1	+	1902	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	338	-10	0	10	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCTCTTCTGACTT	NA	False	NA	2	True	NA	NA	NA	85822339	85836406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
ENSMUSG00000026229.18_85992363_86067009_1	chr1	+	3226	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	22	-136	0	136	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGACCAGACTTTAGTTG	NA	False	NA	17	True	AATAAA	-17	NA	85992362	86067009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ENSMUSG00000026229.18_85992414_86005889_1	chr1	+	1420	6	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	73	60984	0	2348	5prime_fragment	FALSE	canonical	3	1487	junction_4	71.3481604528105	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	85992413	86005889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077
ENSMUSG00000026234.13_86277351_86287086_1	chr1	-	3256	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	4910	0	866	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	4342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTTTGGTTTTTTTGTT	NA	False	NA	-10	True	AATGAA	-20	NA	86287086	86277350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ENSMUSG00000026234.13_86278218_86278621_1	chr1	-	289	2	FSM	ENSMUSG00000026234.13	ENSMUST00000188682.2	601	2	312	0	312	0	multi-exon	FALSE	canonical	3	7412	junction_1	0	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86278621	86278217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_86278419_86278533
ENSMUSG00000026234.13_86278218_86287086_1	chr1	-	2389	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	5777	0	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	4086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86287086	86278217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ENSMUSG00000026238.15_86454448_86458160_1	chr1	+	942	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	274	0	67	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTTGTAAAAAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	86454447	86458160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_1	chr1	+	1211	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	9439.51567547297	13066	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457457_86457527_86457686
ENSMUSG00000026240.13_86514864_86534048_1	chr1	+	2015	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	42	174	0	0	multi-exon	FALSE	canonical	3	303	junction_3	30.6743649757687	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTAGGTGTGGAGGATT	NA	False	NA	93	True	NA	NA	NA	86514863	86534048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ENSMUSG00000026254.18_87141701_87155786_1	chr1	+	1100	8	NIC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	832.747211563838	1469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87141700	87155786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_87141742_87142067_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUSG00000026254.18_87141701_87155786_2	chr1	+	950	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	65	792	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87141700	87155786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUSG00000026260.13_92367208_92401499_1	chr1	-	1461	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	83	476	-10	-207	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTGTCTGCGTGGCAC	NA	False	NA	-20	True	AATAAA	-20	NA	92401499	92367207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ENSMUSG00000026260.13_92367430_92401499_1	chr1	-	1239	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	83	698	-10	134	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAACAAAAAGAGTCTGAC	NA	False	NA	NA	False	AAAAAG	-36	NA	92401499	92367429	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ENSMUSG00000026270.12_92862488_92875663_1	chr1	+	2512	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	390	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	2650	False	NA	NA	False	AATAAA	-14	NA	92862487	92875663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ENSMUSG00000026275.14_93271377_93292987_1	chr1	+	1290	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	8224	0	-8224	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGGTGAATTGATGAAA	NA	False	NA	15	True	ATTAAA	-16	NA	93271376	93292987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026275.14_93271377_93292987_2	chr1	+	1173	9	NIC	ENSMUSG00000026275.14	novel	10315	10	NA	NA	0	-8224	combination_of_known_splicesites	FALSE	canonical	3	27	junction_6	208.918307898087	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGGTGAATTGATGAAA	NA	False	NA	15	True	ATTAAA	-16	NA	93271376	93292987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026275.14_93271377_93293264_1	chr1	+	1567	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	7947	0	-7947	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAATCCTCAGTGCCCT	NA	False	NA	NA	False	AGTAAA	-20	NA	93271376	93293264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026277.15_93549624_93563389_1	chr1	-	2043	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	55	2151	-38	0	multi-exon	TRUE	canonical	3	133	junction_7	20.1461601451751	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGTACAGAGCCTGGC	NA	False	NA	-36	True	AATAAA	-19	NA	93563389	93549623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ENSMUSG00000026279.15_93633113_93682372_1	chr1	-	1972	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	130	3456	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTGTGTAGACTGTACA	NA	False	NA	-2	True	AATAAA	-37	NA	93682372	93633112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
ENSMUSG00000026280.18_93682627_93715907_1	chr1	+	1748	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	0	2425	0	6	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGAATTTCTGGGGCAC	NA	False	NA	20	True	ATTAAA	-26	NA	93682626	93715907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026280.18_93682757_93715907_1	chr1	+	1618	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	130	2425	0	6	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGAATTTCTGGGGCAC	NA	False	NA	20	True	ATTAAA	-26	NA	93682756	93715907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026280.18_93682757_93717156_1	chr1	+	2867	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	130	1176	0	-1176	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	GATAAA	-22	NA	93682756	93717156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026281.16_93719482_93729628_1	chr1	-	1791	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	28	-816	0	816	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGTCTCTCGTGAGATC	2338	False	NA	-15	True	NA	NA	NA	93729628	93719481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ENSMUSG00000026281.16_93720298_93729628_1	chr1	-	983	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	131	junction_4	555.767656039824	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2338	False	NA	-20	True	AATAAA	-24	NA	93729628	93720297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729411
ENSMUSG00000026281.16_93728219_93729628_1	chr1	-	623	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	432	0	-432	multi-exon	FALSE	canonical	3	2511	junction_1	0	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGGTTTTTGGTTTTGT	2338	False	NA	-8	True	ATTAAA	-14	NA	93729628	93728218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93728633_93729419
ENSMUSG00000026281.16_93728219_93729628_2	chr1	-	631	2	NNC	ENSMUSG00000026281.16	novel	1055	2	NA	NA	0	-432	at_least_one_novel_splicesite	FALSE	canonical	3	131	junction_1	0	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGGTTTTTGGTTTTGT	2338	False	NA	-8	True	ATTAAA	-14	NA	93729628	93728218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_93728633_93729411
ENSMUSG00000026283.14_93731705_93746129_1	chr1	+	827	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	18	3688	0	25	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATTTTGACTGATATTT	NA	False	NA	27	True	AATATA	-44	NA	93731704	93746129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
ENSMUSG00000026288.15_87603961_87647434_1	chr1	+	3152	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	0	790	0	18	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTTAAGTGCTTT	9370	False	NA	20	True	NA	NA	NA	87603960	87647434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
ENSMUSG00000026288.15_87603961_87647434_2	chr1	+	3335	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	790	0	18	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTTAAGTGCTTT	9370	False	NA	20	True	NA	NA	NA	87603960	87647434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ENSMUSG00000026317.8_14938855_14947279_1	chr8	+	1672	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	744	4441	-149	2220	multi-exon	FALSE	canonical	3	162	junction_1	24.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGCTGATCATATT	NA	False	NA	16	True	AAGAAA	-2	NA	14938854	14947279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUSG00000026317.8_14938855_14947939_2	chr8	+	2332	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	744	3781	-149	2880	multi-exon	FALSE	canonical	3	162	junction_1	24.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938854	14947939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUSG00000026333.15_97697904_97720491_1	chr1	+	1836	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	7	203	0	-203	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATGCGTAGAATTCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	97697903	97720491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026341.17_125320643_125363444_1	chr1	-	2725	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	-160	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363444	125320642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUSG00000026341.17_125320979_125363444_1	chr1	-	2197	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	20	337	0	242	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGTTTCAGGCTCTTT	NA	False	NA	-3	True	AATAAA	-20	NA	125363444	125320978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
ENSMUSG00000026353.10_128172046_128205329_1	chr1	+	2180	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	147	1786	147	572	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGATCTTATTTTTG	241	False	NA	14	True	AATAAA	-17	NA	128172045	128205329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ENSMUSG00000026355.12_128259327_128287391_1	chr1	-	1340	7	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1307.01310245919	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287391	128259326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266024_128283317_128283397_128287195
ENSMUSG00000026356.16_128291444_128344991_1	chr1	-	2070	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	105	0	105	0	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128344991	128291443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ENSMUSG00000026374.15_118227643_118238966_1	chr1	-	1748	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	180	5135	0	-263	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGATTGGCAGTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	118238966	118227642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
ENSMUSG00000026374.15_118228073_118238966_1	chr1	-	1318	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	180	5565	0	546	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACTTTATTTTGCCCAT	NA	False	NA	-23	True	AATAAA	-16	NA	118238966	118228072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
ENSMUSG00000026374.15_118228355_118238966_1	chr1	-	1036	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	180	5847	0	264	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGAAACCTTTCCACG	NA	False	NA	NA	False	NA	NA	NA	118238966	118228354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
ENSMUSG00000026377.13_118249584_118261320_1	chr1	+	1642	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	15	232	0	-232	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTTCCTTTTTGTCCA	NA	False	NA	24	True	AATATA	-18	NA	118249583	118261320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUSG00000026383.15_119475861_119576681_1	chr1	-	3363	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	-15	3094	-15	0	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576681	119475860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUSG00000026411.18_135945800_135962766_1	chr1	+	1397	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	95	314	0	248	multi-exon	FALSE	canonical	3	317	junction_1	45.0759359303831	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGCAGATCTCAAGGGA	NA	False	NA	22	True	ATTAAA	-17	NA	135945799	135962766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ENSMUSG00000026418.17_135733229_135738727_1	chr1	+	894	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5658	0	434	0	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	4005	False	NA	43	True	ATTAAA	-24	NA	135733228	135738727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026421.15_135647539_135679970_1	chr1	+	2088	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	-260	0	-260	0	multi-exon	FALSE	canonical	3	16	junction_1	177.543684765187	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135647538	135679970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUSG00000026427.17_131080918_131101215_1	chr1	+	2019	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	171.640820985485	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088136_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUSG00000026429.10_134890329_134901900_1	chr1	+	913	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890328	134901900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026439.15_132405144_132432629_1	chr1	+	2705	14	NIC	ENSMUSG00000026439.15	novel	2856	14	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTACAATAAGTGTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	132405143	132432629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ENSMUSG00000026439.15_132405144_132433397_2	chr1	+	3473	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	9	True	AATAAA	-18	NA	132405143	132433397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ENSMUSG00000026456.19_134333733_134339478_1	chr1	+	1623	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	214	0	0	0	multi-exon	TRUE	canonical	3	291	junction_1	53.3666562565053	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	8185	False	NA	43	True	AATAAA	-31	NA	134333732	134339478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026456.19_134333733_134339478_2	chr1	+	1882	8	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	8185	False	NA	43	True	AATAAA	-31	NA	134333732	134339478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026457.15_134343501_134359468_1	chr1	+	1521	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	307	1618	199	-1618	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGTCTGAGTTGTCTG	NA	False	NA	13	True	TTTAAA	-25	NA	134343500	134359468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026457.15_134343501_134360075_1	chr1	+	2128	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	307	1011	199	-1011	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTGGCATTCAAAGAGTT	NA	False	NA	8	True	AATAAA	-16	NA	134343500	134360075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026484.14_151345157_151376562_1	chr1	-	3016	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	144	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTAGATGTGTACT	NA	False	NA	-6	True	CATAAA	-19	NA	151376562	151345156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
ENSMUSG00000026484.14_151345262_151376562_1	chr1	-	2911	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	144	105	0	-105	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATCTAAGCAGAAAGTT	NA	False	NA	-5	True	ATTAAA	-30	NA	151376562	151345261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
ENSMUSG00000026495.9_178233650_178309036_1	chr1	+	556	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	-18	3042	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCAATTTCTAGTTGAA	NA	False	NA	NA	False	ATTAAA	-43	NA	178233649	178309036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
ENSMUSG00000026496.12_180396494_180428565_1	chr1	+	3619	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	254	0	-252	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3147	False	NA	16	True	AATAAA	-17	NA	180396493	180428565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUSG00000026511.8_181952346_181959370_1	chr1	+	665	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	44	114	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTATGTTTCTTTTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	181952345	181959370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_181952541_181958900
ENSMUSG00000026511.8_181952346_181959370_2	chr1	+	734	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	31	602	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTATGTTTCTTTTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	181952345	181959370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUSG00000026511.8_181952346_181959972_1	chr1	+	1267	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	44	-488	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952345	181959972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_181952541_181958900
ENSMUSG00000026516.9_180920535_180971769_1	chr1	-	3560	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	5832	0	289	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCATGCCAGAAAAGTCC	NA	False	NA	-19	True	GATAAA	-39	NA	180971769	180920534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026516.9_180920993_180971769_1	chr1	-	3102	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	6290	0	-169	multi-exon	FALSE	canonical	3	480	junction_18	71.7805568876937	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTAACAGATATCTATTA	NA	False	NA	-11	True	AATAAA	-12	NA	180971769	180920992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026516.9_180941538_180971769_1	chr1	-	1998	14	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	26835	0	-17991	5prime_fragment	FALSE	canonical	3	480	junction_9	88.1404876440457	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTGTATGAGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	180971769	180941537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026520.9_180731888_180735521_1	chr1	+	1418	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	30	132	0	-131	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTTGGTGTTGCA	46	False	NA	11	True	ATTAAA	-14	NA	180731887	180735521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUSG00000026526.15_175428942_175453201_1	chr1	-	1634	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	1002	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	1511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTTTAAAATTTAATTTA	792	False	NA	-14	True	AATAAA	-39	NA	175453201	175428941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
ENSMUSG00000026547.16_172327812_172334947_1	chr1	+	1365	6	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	448.58916616432	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133_172334452_172334474
ENSMUSG00000026547.16_172327812_172334947_2	chr1	+	1388	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	198	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUSG00000026547.16_172327812_172334947_3	chr1	+	1369	6	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	448.58916616432	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133_172334462_172334480
ENSMUSG00000026547.16_172327812_172334947_4	chr1	+	1366	6	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	448.58916616432	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133_172334455_172334476
ENSMUSG00000026556.16_171831996_171854862_1	chr1	-	2229	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	0	3469	0	0	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTTCCTCAGTTTTT	NA	False	NA	30	True	NA	NA	NA	171854862	171831995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ENSMUSG00000026568.7_165288793_165308689_1	chr1	+	744	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	187	94	0	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288792	165308689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026568.7_165288934_165308689_1	chr1	+	603	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	328	94	0	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288933	165308689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026577.14_164118740_164134849_1	chr1	-	2439	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	209	-218	-8	218	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGCCCTTTCCTTTCA	NA	False	NA	-19	True	AATAAA	-18	NA	164134849	164118739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUSG00000026585.14_163710952_163744678_1	chr1	+	1675	3	ISM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	103800	0	103800	0	3prime_fragment	FALSE	canonical	3	171	junction_2	12	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163710951	163744678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_163711142_163715774_163715875_163743293
ENSMUSG00000026594.15_156636400_156767163_1	chr1	-	2295	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	-62	714	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156767163	156636399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_156636400_156767163_2	chr1	-	2217	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	-50	2070	0	0	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156767163	156636399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026617.17_185064377_185089974_1	chr1	+	2214	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	8	-996	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064376	185089974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ENSMUSG00000026627.8_191058109_191082398_1	chr1	+	1533	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	713	0	-713	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGACTTTTTTGTTTTT	NA	False	NA	7	True	NA	NA	NA	191058108	191082398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUSG00000026634.17_190660689_190677981_1	chr1	+	2536	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	0	1178	0	-1178	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGTCAAGT	NA	False	NA	NA	False	NA	NA	NA	190660688	190677981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026641.14_171238881_171246327_1	chr1	+	1784	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	0	383	0	2	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6737	False	NA	65	True	GATAAA	-17	NA	171238880	171246327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026643.17_3285249_3305884_1	chr2	+	231	2	FSM	ENSMUSG00000026643.17	ENSMUST00000155761.2	2450	2	-69	2288	0	-2288	multi-exon	FALSE	canonical	3	266	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAGAAACAAAAGAGAAAAA	987	False	NA	NA	False	NA	NA	NA	3285248	3305884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_3285444_3305848
ENSMUSG00000026643.17_3285249_3327235_1	chr2	+	1782	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	0	2679	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	987	False	NA	10	True	AATAAA	-19	NA	3285248	3327235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026659.14_170701757_170713026_1	chr1	-	1304	6	FSM	ENSMUSG00000026659.14	ENSMUST00000166393.2	911	6	-61	-332	0	0	multi-exon	FALSE	canonical	3	124	junction_5	89.0002247188174	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
ENSMUSG00000026659.14_170701757_170713026_2	chr1	-	1291	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	83	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000026662.14_4886618_4911691_1	chr2	+	1399	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	3677	243	-1257	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4335	False	NA	20	True	ATTAAA	-20	NA	4886617	4911691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4911691_2	chr2	+	1295	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	243	-1257	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4335	False	NA	20	True	ATTAAA	-20	NA	4886617	4911691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4912651_1	chr2	+	2359	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	2717	243	-297	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTCTTGTATAATCAGAT	4335	False	NA	20	True	AATAAA	-17	NA	4886617	4912651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4913311_1	chr2	+	3019	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	2057	243	363	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGGACTTGCTTCTA	4335	False	NA	23	True	AATAAA	-32	NA	4886617	4913311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026664.8_4923891_4943541_1	chr2	+	1372	9	NNC	ENSMUSG00000026664.8	novel	1438	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_3	135.714544172686	665	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	1052	False	NA	9	True	AATAAA	-20	NA	4923890	4943541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_4923956_4927638_4927698_4930408_4930520_4932165_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUSG00000026672.12_5025453_5051010_1	chr2	-	2095	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17846	0	-9002	0	3prime_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5051010	5025452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000026683.15_169325880_169359033_1	chr1	-	2028	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	0	377	0	0	multi-exon	FALSE	canonical	3	65	junction_13	32.5556419455247	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169359033	169325879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
ENSMUSG00000026683.15_169337686_169359033_1	chr1	-	1248	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	0	12183	0	0	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169359033	169337685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
ENSMUSG00000026687.15_167177560_167195855_1	chr1	+	2589	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	246	0	-246	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	16	True	AATAAA	-13	NA	167177559	167195855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
ENSMUSG00000026687.15_167177805_167195855_1	chr1	+	2344	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	245	246	0	-246	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	16	True	AATAAA	-13	NA	167177804	167195855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
ENSMUSG00000026688.6_167199950_167221410_1	chr1	-	682	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	415	0	-415	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
ENSMUSG00000026696.16_162398196_162422729_1	chr1	+	1219	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	37	205	0	-205	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTGGTAATTTTTTGGTC	NA	False	NA	-89	True	AGTAAA	-24	NA	162398195	162422729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
ENSMUSG00000026701.16_161068585_161078736_1	chr1	-	1431	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	53	903	0	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078736	161068584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ENSMUSG00000026701.16_161068585_161078736_2	chr1	-	1542	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	-583	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	1858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078736	161068584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
ENSMUSG00000026705.17_160926102_160959012_1	chr1	-	2026	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	69	2087	0	1587	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTATGTGTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	160959012	160926101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ENSMUSG00000026709.11_160869075_160898216_1	chr1	-	2703	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	12	904	-4	0	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898216	160869074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
ENSMUSG00000026718.18_14079000_14152351_1	chr2	+	2815	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	91	2094	0	0	multi-exon	TRUE	canonical	3	181	junction_8	24.7443735759998	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATTCTGATTTTGTTT	4773	False	NA	27	True	ATTAAA	-29	NA	14078999	14152351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
ENSMUSG00000026723.11_13515922_13549475_1	chr2	-	1687	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	4	2097	-1	-2097	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	9033	False	NA	NA	False	TATAAA	-18	NA	13549475	13515921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
ENSMUSG00000026727.11_13081823_13276122_1	chr2	-	1442	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	104	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7147	False	NA	-7	True	AATAAA	-12	NA	13276122	13081822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ENSMUSG00000026728.10_13579133_13587378_1	chr2	+	1564	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	370	259	0	89	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTATCTTAGGAAAACAGC	91	False	NA	NA	False	NA	NA	NA	13579132	13587378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026728.10_13579133_13587636_1	chr2	+	1822	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	370	1	0	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	91	False	NA	13	True	AATAAA	-13	NA	13579132	13587636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026730.13_12928912_13006425_1	chr2	+	1806	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	60	-634	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGTTTTCCACTTAT	4772	False	NA	NA	False	AATAAA	-39	NA	12928911	13006425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026749.12_38401680_38476585_1	chr2	+	2280	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	25	8033	0	807	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGGAGGAAACAGTCTG	NA	False	NA	18	True	TATAAA	-22	NA	38401679	38476585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
ENSMUSG00000026750.7_38478048_38533932_1	chr2	-	993	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	167	0	0	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	2392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026753.6_39086789_39116339_1	chr2	-	1568	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	124	2423	-7	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116339	39086788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026753.6_39086789_39116463_1	chr2	-	1692	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	2423	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116463	39086788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026755.15_38898153_38905602_1	chr2	+	987	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	65	287	0	197	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38898152	38905602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUSG00000026761.13_48795218_48839253_2	chr2	-	1649	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	35	2382	0	110	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839253	48795217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026761.13_48795218_48839253_3	chr2	-	1597	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	-10	-110	0	110	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839253	48795217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026761.13_48795328_48839253_1	chr2	-	1539	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	35	2492	0	0	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839253	48795327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026766.17_50169893_50186699_1	chr2	-	1645	7	ISM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	30	0	0	0	intron_retention	FALSE	canonical	3	533	junction_6	61.03664655125	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263
ENSMUSG00000026766.17_50169893_50186699_2	chr2	-	1257	8	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_6	203.005881085012	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
ENSMUSG00000026766.17_50169893_50186699_3	chr2	-	1272	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	-469	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
ENSMUSG00000026766.17_50169893_50186813_1	chr2	-	1391	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186813	50169892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
ENSMUSG00000026767.13_12352331_12424248_1	chr2	-	2054	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	33	257	-2	112	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424248	12352330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUSG00000026767.13_12352331_12424248_2	chr2	-	1425	8	NIC	ENSMUSG00000026767.13	novel	1221	9	NA	NA	-2	112	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	71.3370842678388	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424248	12352330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361711_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ENSMUSG00000026767.13_12352729_12424248_1	chr2	-	1656	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	33	655	-2	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACGTTTAAATTATTTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	12424248	12352728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUSG00000026775.10_23046530_23087094_1	chr2	+	2380	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	2178	0	1772	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCTTTGCAACATTTTT	7222	False	NA	13	True	AATATA	-13	NA	23046529	23087094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026775.10_23046530_23087280_1	chr2	+	2566	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	1992	0	1958	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTGAAAAATGTCAATC	7222	False	NA	10	True	AATAAA	-22	NA	23046529	23087280	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026775.10_23046530_23087626_1	chr2	+	2912	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	1646	0	-1646	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCATGTATGCCCATTT	7222	False	NA	11	True	ATTAAA	-3	NA	23046529	23087626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026784.15_22785534_22830278_1	chr2	+	1528	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
ENSMUSG00000026784.15_22785631_22830278_2	chr2	+	1610	12	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	18	junction_1	98.1149604012836	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5705	False	NA	19	True	AATAAA	-21	NA	22785630	22830278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_22785775_22789930_22789996_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000026790.20_29779830_29812551_1	chr2	+	2248	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUSG00000026790.20_29779830_29812551_2	chr2	+	2094	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUSG00000026798.11_29678283_29687000_1	chr2	+	1224	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	12	755	0	2	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGGTTGTCCTAGAC	NA	False	NA	29	True	AATAAA	-19	NA	29678282	29687000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
ENSMUSG00000026799.16_29352119_29414805_1	chr2	+	865	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34404	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	5296	False	NA	32	True	AATAAA	-20	NA	29352118	29414805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026806.16_28765723_28795230_1	chr2	+	1106	5	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	35252	353	18570	-353	3prime_fragment	FALSE	canonical	3	109	junction_3	15.6744218394172	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTCCATATGTTC	NA	False	NA	10	True	GATAAA	-19	NA	28765722	28795230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ENSMUSG00000026806.16_28765723_28795583_1	chr2	+	1459	5	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	35252	0	18570	0	3prime_fragment	FALSE	canonical	3	109	junction_3	15.6744218394172	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28765722	28795583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ENSMUSG00000026810.13_32460879_32463583_1	chr2	+	1145	3	FSM	ENSMUSG00000026810.13	ENSMUST00000128039.2	655	3	0	-490	0	-8	multi-exon	FALSE	canonical	3	393	junction_2	5	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4782	False	NA	15	True	AATAAA	-16	NA	32460878	32463583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32461308_32462308_32462412_32462970
ENSMUSG00000026817.15_32518402_32523875_1	chr2	+	831	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2953	1191	0	463	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTAGGATTGCTCCTTTC	NA	False	NA	NA	False	ACTAAA	-15	NA	32518401	32523875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026827.13_57128394_57257624_1	chr2	+	2513	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	3107	0	-241	multi-exon	TRUE	canonical	3	146	junction_2	27.9815089612766	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAATCAAAGAAAGGAAAG	NA	False	NA	59	True	NA	NA	NA	57128393	57257624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ENSMUSG00000026843.16_31462804_31507532_1	chr2	+	3182	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	0	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	634	False	NA	30	True	AATAAA	-31	NA	31462803	31507532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
ENSMUSG00000026843.16_31462804_31507532_2	chr2	+	3121	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	141	6	0	0	multi-exon	FALSE	canonical	3	465	junction_18	67.3624112131124	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	634	False	NA	30	True	AATAAA	-31	NA	31462803	31507532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUSG00000026851.10_30862848_30871953_1	chr2	-	1325	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	0	659	0	-659	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCCTGTCTTCTAATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	30871953	30862847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
ENSMUSG00000026851.10_30862848_30872213_1	chr2	-	1585	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	-260	659	0	-659	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCCTGTCTTCTAATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	30872213	30862847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
ENSMUSG00000026856.15_30282440_30290539_1	chr2	+	2075	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	174	2	0	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282439	30290539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUSG00000026857.10_30697969_30713029_1	chr2	+	1240	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	131	16	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697968	30713029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUSG00000026860.17_30235153_30249277_2	chr2	-	1427	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	51	332	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCCCAGCTCCCTTAA	NA	False	NA	44	True	NA	NA	NA	30249277	30235152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026864.14_34662111_34666543_1	chr2	+	2527	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	129	1016	0	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662110	34666543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUSG00000026869.13_34742114_34760951_2	chr2	-	2006	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	23	2368	-6	0	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760951	34742113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ENSMUSG00000026869.13_34742300_34760951_2	chr2	-	1820	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	23	2554	-6	155	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGATTCTCTCAACCAC	NA	False	NA	-21	True	AATAAA	-16	NA	34760951	34742299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ENSMUSG00000026878.18_35070217_35091021_1	chr2	-	2970	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	111	0	-27	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9663	False	NA	NA	False	AATAAA	-26	NA	35091021	35070216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026878.18_35071523_35091021_1	chr2	-	1664	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	111	1306	-27	618	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTTGTACAGTGTGACC	9663	False	NA	-11	True	AATAAA	-32	NA	35091021	35071522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026887.10_36026646_36079608_1	chr2	+	1327	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	245	1051	0	-1051	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGAGTGGTTTGGATGGA	NA	False	NA	26	True	AATAAA	-27	NA	36026645	36079608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUSG00000026889.13_36006091_36026627_1	chr2	-	2459	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	158	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026627	36006090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUSG00000026893.5_62494629_62522315_1	chr2	+	1192	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	2138	0	1540	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACAAGTTATACTTGTG	NA	False	NA	NA	False	GATAAA	-19	NA	62494628	62522315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUSG00000026914.16_61542104_61630444_1	chr2	+	1199	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	66	276	0	26	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGCTCTGAGTGTATCG	8613	False	NA	20	True	AATAAA	-20	NA	61542103	61630444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUSG00000026917.16_27405169_27425139_1	chr2	+	1482	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	1408	0	84	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTGTTTTTCTCTGTGG	NA	False	NA	22	True	NA	NA	NA	27405168	27425139	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUSG00000026917.16_27405169_27425323_1	chr2	+	1666	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	1224	0	268	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCGTGTCAAGTCCCTTT	NA	False	NA	13	True	NA	NA	NA	27405168	27425323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUSG00000026922.14_26483069_26493728_1	chr2	-	1240	6	NIC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_5	206.37577377202	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9938	False	NA	1	True	TATAAA	-45	NA	26493728	26483068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493673
ENSMUSG00000026926.15_26279360_26285738_1	chr2	+	1730	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	9	1396	0	-1396	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTGTCTTTCAAACAC	653	False	NA	35	True	AATGAA	-20	NA	26279359	26285738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUSG00000026926.15_26279360_26286209_1	chr2	+	2201	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	9	925	0	-925	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTTTGCCTCAGTTA	653	False	NA	41	True	NA	NA	NA	26279359	26286209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUSG00000026955.14_25262346_25266813_1	chr2	+	1696	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	13	1412	0	1	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGGCTGTATTTCTCAT	6670	False	NA	4	True	AGTAAA	-13	NA	25262345	25266813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026956.16_25251502_25255353_1	chr2	-	1407	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	341	1601	274	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	19	True	NA	-16	True	NA	NA	NA	25255353	25251501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ENSMUSG00000026956.16_25251502_25255636_1	chr2	-	1690	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	58	1601	-9	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	NA	False	NA	-16	True	NA	NA	NA	25255636	25251501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ENSMUSG00000026960.7_53082100_53108457_1	chr2	+	1773	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	775	0	-775	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAAGGGTTCTTGTTGTT	NA	False	NA	10	True	AATATA	-22	NA	53082099	53108457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
ENSMUSG00000026965.13_25162490_25175618_1	chr2	+	2695	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	0	309	0	-309	multi-exon	TRUE	canonical	3	410	junction_2	48.8355374929182	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	29	True	ATTAAA	-16	NA	25162489	25175618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
ENSMUSG00000026975.11_24852478_24862175_1	chr2	+	1381	7	NIC	ENSMUSG00000026975.11	novel	2296	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026977.18_60040257_60078317_1	chr2	+	2330	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	26	1238	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040256	60078317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUSG00000026988.16_59682708_59712950_2	chr2	-	2017	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
ENSMUSG00000026999.15_80469176_80489026_1	chr2	+	1323	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	16	220	0	-220	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTCACTGGCTTTCA	NA	False	NA	15	True	ATTAAA	-15	NA	80469175	80489026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000026999.15_80469176_80489458_1	chr2	+	1755	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	16	-212	0	208	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAGTTTGTTAATATG	NA	False	NA	NA	False	AATAAA	-16	NA	80469175	80489458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000027001.11_80447580_80461533_1	chr2	+	969	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	191	472	5	365	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447579	80461533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027006.14_80146103_80183764_1	chr2	+	3126	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	293	623	293	-623	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTACTGTATAGACAGAGG	NA	False	NA	8	True	AATAAA	-24	NA	80146102	80183764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ENSMUSG00000027011.15_78699678_78750927_1	chr2	+	1252	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	287	710	0	286	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCTTGTCATAATGTT	NA	False	NA	9	True	AATAAA	-17	NA	78699677	78750927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027011.15_78699678_78751064_1	chr2	+	1389	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	287	573	0	423	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTGTAGAGTTTTTT	NA	False	NA	11	True	ATTAAA	-18	NA	78699677	78751064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027012.16_71042328_71093638_1	chr2	+	2472	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	150	9	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	15	True	AATAAA	-17	NA	71042327	71093638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027018.12_71219604_71271859_1	chr2	+	1469	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	107	0	-107	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	6027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5118	False	NA	17	True	AATAAA	-18	NA	71219603	71271859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027067.17_84867799_84877453_1	chr2	+	2983	16	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	221	0	0	0	3prime_fragment	FALSE	canonical	3	1260	junction_6	129.702223059848	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867798	84877453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUSG00000027075.17_84669739_84693925_1	chr2	+	2371	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669738	84693925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUSG00000027077.8_84641520_84646306_1	chr2	-	710	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6690	0	6690	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4459	False	NA	-19	True	AATAAA	-19	NA	84646306	84641519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
ENSMUSG00000027077.8_84641520_84646465_1	chr2	-	869	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6531	0	6531	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4300	False	NA	-19	True	AATAAA	-19	NA	84646465	84641519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
ENSMUSG00000027077.8_84641520_84646604_1	chr2	-	1008	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6392	0	6392	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4161	False	NA	-19	True	AATAAA	-19	NA	84646604	84641519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
ENSMUSG00000027078.15_84629178_84640347_1	chr2	+	1381	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	6	173	0	-173	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTCTCGTGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	84629177	84640347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
ENSMUSG00000027079.16_84553466_84557588_1	chr2	-	1806	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	106	0	-2	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557588	84553465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUSG00000027080.7_84508746_84518409_1	chr2	+	1909	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	150	0	-150	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTTTCTCTTTTGACTC	3357	False	NA	14	True	AATAAA	-16	NA	84508745	84518409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUSG00000027082.16_84263204_84304379_1	chr2	-	1353	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	139	0	139	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304379	84263203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ENSMUSG00000027082.16_84263204_84307107_1	chr2	-	1333	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307107	84263203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ENSMUSG00000027082.16_84263204_84307107_2	chr2	-	1283	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307107	84263203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ENSMUSG00000027091.15_83474881_83494966_1	chr2	+	2009	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	102	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	953	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474880	83494966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUSG00000027108.16_72923544_73044707_1	chr2	-	1692	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	84	399	-30	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGTTTGGGGA	NA	False	NA	-3	True	AATAAA	-16	NA	73044707	72923543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUSG00000027108.16_72923966_73044707_1	chr2	-	1270	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	84	821	-30	-420	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTTATTGCTAAGATCG	NA	False	NA	-22	True	AATAAA	-1	NA	73044707	72923965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUSG00000027122.16_106794774_106804742_1	chr2	-	1378	5	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804742	106794773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
ENSMUSG00000027122.16_106794774_106804742_2	chr2	-	1929	4	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804742	106794773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
ENSMUSG00000027132.4_112209571_112243680_1	chr2	+	1966	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	15	905	0	-905	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGCTTTTTTAATTCT	NA	False	NA	NA	False	AGTAAA	-18	NA	112209570	112243680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUSG00000027133.4_112092271_112093011_1	chr2	+	506	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	603	0	-603	multi-exon	FALSE	canonical	3	3938	junction_1	0	958	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATTTTGTGTGTTGTTG	NA	False	NA	24	True	ATTAAA	-18	NA	112092270	112093011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_112092423_112092657
ENSMUSG00000027160.17_109848162_109875009_1	chr2	+	1418	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	652	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTACTCTGTTATT	NA	False	NA	33	True	AATAAA	-19	NA	109848161	109875009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027160.17_109848162_109875194_1	chr2	+	1603	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	467	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTTGCATTTATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	109848161	109875194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027160.17_109848459_109875009_1	chr2	+	1121	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	297	652	134	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTACTCTGTTATT	NA	False	NA	33	True	AATAAA	-19	NA	109848458	109875009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027162.8_109721198_109728066_2	chr2	+	946	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	3282	0	983	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTTTTAAAAAGAGGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	109721197	109728066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUSG00000027165.17_101392469_101459354_1	chr2	-	949	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	-19	1343	0	0	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCTCTGTGGAAATGTA	NA	False	NA	-20	True	AATAAA	-15	NA	101459354	101392468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
ENSMUSG00000027166.15_105796670_105833608_1	chr2	-	1295	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	286	-384	0	384	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGCCCAGTTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	105833608	105796669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027166.15_105797054_105833608_1	chr2	-	911	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	286	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833608	105797053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027167.12_105532784_105734845_1	chr2	-	1572	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	64	1412	-17	-1412	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGCCTTAGAGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	105734845	105532783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ENSMUSG00000027176.9_104420868_104439774_1	chr2	+	739	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	-95	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6900	False	NA	4	True	ATTAAA	-16	NA	104420867	104439774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104421048_104439215
ENSMUSG00000027176.9_104420868_104439774_2	chr2	+	621	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	-9	1977	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6900	False	NA	4	True	ATTAAA	-16	NA	104420867	104439774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104421048_104439215_104439318_104439435
ENSMUSG00000027180.13_103858189_103885488_1	chr2	+	1375	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	-16	2361	0	-2347	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGACATTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	103858188	103885488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
ENSMUSG00000027180.13_103858189_103887840_1	chr2	+	2753	11	NIC	ENSMUSG00000027180.13	novel	4740	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTCAACTGTATTTATT	NA	False	NA	5	True	NA	NA	NA	103858188	103887840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
ENSMUSG00000027180.13_103858189_103891357_1	chr2	+	2389	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	123	2228	0	-1991	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTAAGTGCCTATT	NA	False	NA	39	True	AATGAA	-37	NA	103858188	103891357	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUSG00000027180.13_103858189_103891841_1	chr2	+	2873	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	123	1744	0	-1507	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACCATGGCTACTGCT	NA	False	NA	9	True	ATTAAA	-22	NA	103858188	103891841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUSG00000027184.15_103596005_103627368_1	chr2	-	3346	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	81	642	-50	-642	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTATCTTGAAACACTGG	NA	False	NA	NA	False	AATAAA	-16	NA	103627368	103596004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUSG00000027184.15_103597452_103627368_1	chr2	-	3441	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	81	2089	-50	0	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103627368	103597451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUSG00000027187.11_103284347_103315471_1	chr2	-	2426	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	34	153	-1	-153	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	-8	True	AATAAA	-16	NA	103315471	103284346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ENSMUSG00000027193.13_94242027_94268481_1	chr2	-	3741	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027193.13_94243849_94268481_1	chr2	-	1919	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	0	-1822	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTCTGCAGCCTTGA	NA	False	NA	-7	True	NA	NA	NA	94268481	94243848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027193.13_94243849_94268481_2	chr2	-	1914	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	1822	0	-1822	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTCTGCAGCCTTGA	NA	False	NA	-7	True	NA	NA	NA	94268481	94243848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027203.16_125089402_125099668_1	chr2	+	1090	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	860	0	0	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	1480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089401	125099668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_125089637_125099668_1	chr2	+	810	5	NIC	ENSMUSG00000027203.16	novel	1020	7	NA	NA	-183	0	combination_of_known_splicesites	FALSE	canonical	3	111	junction_2	998.653687471288	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089636	125099668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_125089817_125091085_125091178_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_125089637_125099668_2	chr2	+	855	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	860	-183	0	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089636	125099668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_125089637_125100420_1	chr2	+	1607	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	108	-183	-108	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	1443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCCATTTGGAGGCTGG	NA	False	NA	9	True	AATAAA	-19	NA	125089636	125100420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027206.14_125672224_125700916_1	chr2	-	3228	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	143	-1298	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125700916	125672223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_125672373_125700916_1	chr2	-	3100	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	143	149	0	-149	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTATTTTCTTCTAT	NA	False	NA	77	True	AATAAA	-21	NA	125700916	125672372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_125673519_125700916_2	chr2	-	1933	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	143	-3	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTCTTGATGTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	125700916	125673518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_125673519_125700916_3	chr2	-	1954	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	143	1295	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTCTTGATGTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	125700916	125673518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027207.16_125708163_125825507_1	chr2	+	1792	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	136	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708162	125825507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
ENSMUSG00000027222.15_92205838_92211562_1	chr2	+	1205	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	187	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205837	92211562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUSG00000027227.8_122065230_122094817_1	chr2	+	1348	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	1004	0	-1004	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGTGGGCATGCCTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	122065229	122094817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUSG00000027229.6_122016753_122036882_1	chr2	+	1979	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1945	False	NA	NA	False	AATAAA	-19	NA	122016752	122036882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122036882_2	chr2	+	1917	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1945	False	NA	NA	False	AATAAA	-19	NA	122016752	122036882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027233.5_121950589_121956606_1	chr2	-	1472	11	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60064	0	60064	0	3prime_fragment	FALSE	canonical	3	37	junction_10	25.8797217913949	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGTTGCCAGACTTT	NA	False	NA	0	True	AATAAA	-20	NA	121956606	121950588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
ENSMUSG00000027236.9_121859027_121883506_1	chr2	+	1840	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	0	3573	0	-3573	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTTATATCCCAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	121859026	121883506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000027236.9_121859027_121884112_1	chr2	+	2446	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	0	2967	0	-2967	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	121859026	121884112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000027236.9_121859133_121883506_1	chr2	+	1734	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	106	3573	0	-3573	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTTATATCCCAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	121859132	121883506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000027239.15_91760173_91762033_1	chr2	-	926	4	ISM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	23	0	0	intron_retention	FALSE	canonical	3	2268	junction_3	242.697342383472	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762033	91760172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716
ENSMUSG00000027239.15_91760173_91762033_2	chr2	-	841	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	11	-138	0	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762033	91760172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
ENSMUSG00000027239.15_91760173_91762079_1	chr2	-	887	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	-35	-138	-35	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
ENSMUSG00000027243.9_91541197_91551908_1	chr2	+	2210	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	18	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3372	False	NA	NA	False	NA	NA	NA	91541196	91551908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_91541411_91542424_91543211_91550698
ENSMUSG00000027243.9_91541197_91551908_2	chr2	+	2120	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	18	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3372	False	NA	NA	False	NA	NA	NA	91541196	91551908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_91541321_91542424_91543211_91550698
ENSMUSG00000027245.12_121287605_121288792_1	chr2	+	439	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	161	361	0	5	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTTCAGTTTCA	NA	False	NA	25	True	AATAAA	-20	NA	121287604	121288792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000027245.12_121287605_121288917_1	chr2	+	564	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	161	236	0	0	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	12	True	TATAAA	-20	NA	121287604	121288917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000027247.17_91480567_91502671_1	chr2	+	2839	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	362	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027248.14_121244364_121268338_1	chr2	+	1832	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	108	830	0	-830	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGGGAGAAAATTATTT	NA	False	NA	10	True	AATACA	-21	NA	121244363	121268338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027248.14_121244364_121268461_1	chr2	+	1955	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	108	707	0	-707	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244363	121268461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027255.15_91095638_91107276_1	chr2	+	2749	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	319	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5821	False	NA	NA	False	AATAAA	-25	NA	91095637	91107276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUSG00000027257.14_91087183_91095023_1	chr2	+	1777	10	NNC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	28.1464424434461	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4775	False	NA	19	True	AATAAA	-16	NA	91087182	91095023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093529_91093631_91093769_91094109_91094232_91094535
ENSMUSG00000027274.17_136715700_136733087_1	chr2	-	2956	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	222	0	-13	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733087	136715699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUSG00000027274.17_136722774_136733087_1	chr2	-	1139	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	-417	222	417	multi-exon	FALSE	canonical	3	323	junction_1	8.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTATCTCAAGTCTGAA	NA	False	NA	-11	True	AATAAA	-20	NA	136733087	136722773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000027282.18_90677631_90695736_1	chr2	+	1019	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	14	1248	0	1	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_3	chr2	+	961	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	109	-4	0	1	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_4	chr2	+	1024	13	NIC	ENSMUSG00000027282.18	novel	1047	13	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	704.955687141634	1243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_90677708_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_5	chr2	+	1046	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	132	1418	0	1	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	1816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90696986_1	chr2	+	2296	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	132	168	0	2	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	1868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCTTAGCCTGCTGCTT	228	False	NA	9	True	NA	NA	NA	90677630	90696986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027285.14_120439864_120449702_1	chr2	+	815	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	2339	0	-685	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTAGATTGTTGT	NA	False	NA	11	True	NA	NA	NA	120439863	120449702	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120450387_1	chr2	+	1500	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	1654	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAATTGAATGTTCC	NA	False	NA	NA	False	TTTAAA	-4	NA	120439863	120450387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120451822_1	chr2	+	2935	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	219	0	-219	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAGGTTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	120439863	120451822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027287.15_120398178_120430228_1	chr2	+	1189	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	26	1508	0	-1508	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGACGAGTGCTTGGGGT	NA	False	NA	NA	False	ATTAAA	-21	NA	120398177	120430228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027287.15_120398178_120431070_1	chr2	+	2031	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	26	666	0	-666	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAGCTGTATTAGCTCT	NA	False	NA	24	True	AATAAA	-29	NA	120398177	120431070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027300.11_130433250_130471947_1	chr2	-	2539	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	0	-1328	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471947	130433249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
ENSMUSG00000027300.11_130433250_130471947_2	chr2	-	2392	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	11	1328	0	-1328	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471947	130433249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
ENSMUSG00000027304.10_119505549_119541485_1	chr2	+	717	5	ISM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	0	24403	0	-1458	5prime_fragment	FALSE	canonical	3	77	junction_4	18.907670401189	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAGAAGAAAGAAAAAAAGAA	NA	False	NA	NA	False	ACTAAA	-17	NA	119505548	119541485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445
ENSMUSG00000027305.10_119485927_119493302_1	chr2	-	1495	5	NIC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	131.115407180087	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493073
ENSMUSG00000027305.10_119485927_119493302_2	chr2	-	1377	5	NNC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	127.660683062562	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493191
ENSMUSG00000027305.10_119485927_119493302_3	chr2	-	1293	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
ENSMUSG00000027323.11_118943298_118966205_1	chr2	+	1792	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	10	1566	0	516	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGTGTTATTTGCTGG	NA	False	NA	18	True	AATAAA	-14	NA	118943297	118966205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027323.11_118943298_118966554_1	chr2	+	2141	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	10	1217	0	865	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	1043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGAAGAAAGCTCAAAAG	NA	False	NA	10	True	ATTAAA	-17	NA	118943297	118966554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027323.11_118943417_118954594_1	chr2	+	774	5	ISM	ENSMUSG00000027323.11	ENSMUST00000110828.2	2849	7	122	9486	119	267	5prime_fragment	FALSE	canonical	3	719	junction_4	88.7901317714981	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTACTTTATGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	118943416	118954594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264
ENSMUSG00000027323.11_118943450_118966205_1	chr2	+	1640	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	162	1566	152	516	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGTGTTATTTGCTGG	NA	False	NA	18	True	AATAAA	-14	NA	118943449	118966205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027327.17_130988244_131001965_1	chr2	-	1276	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	36	-480	-3	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001965	130988243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
ENSMUSG00000027331.16_118644713_118665021_1	chr2	+	1217	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	229	3156	0	-102	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAAGTTTTTTTGGCT	NA	False	NA	-35	True	NA	NA	NA	118644712	118665021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027331.16_118644713_118665128_1	chr2	+	1324	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	229	3049	0	5	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGACTAACACTAGGG	NA	False	NA	26	True	AATAAA	-19	NA	118644712	118665128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027332.12_118692509_118707760_1	chr2	+	1094	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	0	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692508	118707760	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
ENSMUSG00000027332.12_118692509_118711833_1	chr2	+	1929	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	0	337	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692508	118711833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
ENSMUSG00000027332.12_118692618_118711833_1	chr2	+	1925	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	183	1557	109	337	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692617	118711833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
ENSMUSG00000027341.11_132081922_132089676_2	chr2	-	1051	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	51	510	0	-508	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCCTCCACCTTCATA	4921	False	NA	NA	False	ATTAAA	-19	NA	132089676	132081921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUSG00000027342.15_132091082_132095100_1	chr2	-	1384	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	134	0	134	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	2411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8359	False	NA	-10	True	AATAAA	-27	NA	132095100	132091081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091206_132094516_1	chr2	-	1102	6	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	0	-124	combination_of_known_junctions	FALSE	canonical	3	44	junction_5	901.923721830178	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8943	False	NA	-3	True	AATAAA	-21	NA	132094516	132091205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094309
ENSMUSG00000027342.15_132091206_132095100_1	chr2	-	1176	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	134	-124	at_least_one_novel_splicesite	FALSE	canonical	3	210	junction_2	881.92298983528	1537	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8359	False	NA	-3	True	AATAAA	-21	NA	132095100	132091205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_132091616_132091693_132091818_132093247_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091206_132095100_2	chr2	-	1260	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	134	124	134	-124	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	2389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8359	False	NA	-3	True	AATAAA	-21	NA	132095100	132091205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091396_132095100_1	chr2	-	1070	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	134	314	134	-314	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTACTTTCTTTTCTCT	8359	False	NA	NA	False	AATAAA	-23	NA	132095100	132091395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027361.16_126480941_126494230_1	chr2	-	811	5	ISM	ENSMUSG00000027361.16	ENSMUST00000039978.13	1991	9	24027	385	10980	0	3prime_fragment	FALSE	canonical	3	55	junction_2	154.111161179196	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	6423	False	NA	-17	True	NA	NA	NA	126494230	126480940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152
ENSMUSG00000027365.15_126672096_126718118_1	chr2	-	1945	15	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	32	38611	-12	665	5prime_fragment	FALSE	canonical	3	201	junction_9	21.566697683688	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACACAATCATTTCATT	NA	False	NA	NA	False	GATAAA	-11	NA	126718118	126672095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ENSMUSG00000027374.13_127429142_127445904_1	chr2	+	1636	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	0	2845	0	129	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	3967	False	NA	25	True	AATAAA	-22	NA	127429141	127445904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127429339_127445904_1	chr2	+	1439	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	197	2845	0	129	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4164	False	NA	25	True	AATAAA	-22	NA	127429338	127445904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127432265_127445904_1	chr2	+	1429	12	NNC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-96	129	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	399.254304923566	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7090	False	NA	25	True	AATAAA	-22	NA	127432264	127445904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_127432322_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127432361_127445904_1	chr2	+	1413	12	NIC	ENSMUSG00000027374.13	novel	424	5	NA	NA	0	129	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	397.120336904912	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7186	False	NA	25	True	AATAAA	-22	NA	127432360	127445904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027375.15_127475146_127498139_1	chr2	-	2302	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	476	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	-2	True	ATTAAA	-17	NA	127498139	127475145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
ENSMUSG00000027387.12_128768188_128785997_1	chr2	-	1612	9	NNC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_6	71.0922595997623	271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777243_128777467_128781762_128781857_128785767
ENSMUSG00000027404.17_130013555_130021263_1	chr2	-	1225	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	60	-152	-9	0	multi-exon	TRUE	canonical	3	49	junction_6	1649.031750539	2166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021263	130013554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
ENSMUSG00000027405.17_130116366_130120883_1	chr2	+	1511	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	350	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTCTCTACCTAAATCC	NA	False	NA	NA	False	AAAAAG	-38	NA	130116365	130120883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUSG00000027405.17_130116366_130121227_1	chr2	+	2339	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	1223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ENSMUSG00000027405.17_130116366_130121227_2	chr2	+	2013	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	170	junction_12	786.810487382798	1206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
ENSMUSG00000027405.17_130116366_130121227_3	chr2	+	1974	13	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	803.725630354594	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
ENSMUSG00000027406.14_130121229_130126354_1	chr2	-	1503	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	113	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126354	130121228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027406.14_130121229_130126354_2	chr2	-	1385	13	NIC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	219.740171692742	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126354	130121228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_130121358_130121475_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027411.18_130266285_130285654_1	chr2	+	2626	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	535	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	21	True	AATAAA	-21	NA	130266284	130285654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ENSMUSG00000027423.16_144092043_144112712_1	chr2	-	2398	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	114	0	-8	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112712	144092042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027423.16_144092453_144112492_1	chr2	-	2009	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	410	0	-410	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATGGAGTGCTTTTGTA	NA	False	NA	-21	True	AATAAA	-15	NA	144112492	144092452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ENSMUSG00000027423.16_144092453_144112712_1	chr2	-	1988	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	114	410	-8	-410	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATGGAGTGCTTTTGTA	NA	False	NA	-21	True	AATAAA	-15	NA	144112712	144092452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027424.12_144112861_144122308_1	chr2	+	1960	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	41	839	0	-128	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGGCTGTTCTTGGGAG	NA	False	NA	NA	False	NA	NA	NA	144112860	144122308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027424.12_144112861_144122436_1	chr2	+	2030	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	278	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027424.12_144112861_144122436_2	chr2	+	2088	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	41	711	0	0	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027425.19_144210919_144215871_1	chr2	+	920	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	3	-230	3	230	multi-exon	FALSE	canonical	3	459	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATCATTATTATTATTA	NA	False	NA	17	True	AATAAA	-18	NA	144210918	144215871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144211078_144215110
ENSMUSG00000027429.17_144398176_144432669_1	chr2	+	2761	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUSG00000027433.6_146854916_146919579_1	chr2	+	3093	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	341	0	-341	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTATCTGTGTGTAT	NA	False	NA	18	True	AATAAA	-19	NA	146854915	146919579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ENSMUSG00000027447.7_148713642_148717094_1	chr2	-	458	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	402	0	277	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717094	148713641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUSG00000027447.7_148713642_148717388_1	chr2	-	752	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	108	0	-17	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	2276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717388	148713641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUSG00000027455.17_151336102_151353225_1	chr2	+	1475	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	-111	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336101	151353225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUSG00000027463.15_151838455_151850906_1	chr2	+	2397	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	272	0	-236	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGGGCTGTGTACACA	NA	False	NA	13	True	ATTAAA	-17	NA	151838454	151850906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027466.16_152158754_152174304_2	chr2	-	1856	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	28	500	0	-500	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGACGATGGTGGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	152174304	152158753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUSG00000027469.17_152689915_152735936_1	chr2	+	3016	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	638	0	-638	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2725	False	NA	15	True	AATAAA	-14	NA	152689914	152735936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_152689915_152735936_2	chr2	+	2841	18	NIC	ENSMUSG00000027469.17	novel	4365	18	NA	NA	0	-638	combination_of_known_junctions	FALSE	canonical	3	164	junction_2	166.868304785146	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2725	False	NA	15	True	AATAAA	-14	NA	152689914	152735936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_152690030_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_152689915_152735936_3	chr2	+	2825	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	31	1305	0	-638	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2725	False	NA	15	True	AATAAA	-14	NA	152689914	152735936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027479.15_153583194_153609255_1	chr2	+	1361	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	5975	0	-5975	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATATGCTTCCATAT	NA	False	NA	14	True	AATAAA	-18	NA	153583193	153609255	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027479.15_153583194_153610291_1	chr2	+	2397	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	4939	0	-4939	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACAAAAAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	153583193	153610291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027479.15_153583194_153610482_1	chr2	+	2588	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	4748	0	-4748	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTTCTGAAATGTGT	NA	False	NA	19	True	AATAAA	-20	NA	153583193	153610482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027495.5_172187485_172194868_1	chr2	+	816	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	2801	0	-2801	multi-exon	FALSE	canonical	3	138	junction_1	7.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	172187484	172194868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172187768_172193374_172193545_172194505
ENSMUSG00000027496.16_172198312_172212441_1	chr2	-	1724	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	-15	196	0	-196	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACACCCATTCAGGGTCT	NA	False	NA	-9	True	AATAAA	-26	NA	172212441	172198311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUSG00000027496.16_172198312_172212441_2	chr2	-	1646	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	14	202	0	-196	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACACCCATTCAGGGTCT	NA	False	NA	-9	True	AATAAA	-26	NA	172212441	172198311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUSG00000027498.15_172212601_172223001_1	chr2	+	1966	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	0	-1367	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212600	172223001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
ENSMUSG00000027498.15_172212897_172223001_1	chr2	+	1841	6	FSM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	243	1367	243	-1367	multi-exon	FALSE	canonical	3	206	junction_1	74.6527963307471	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212896	172223001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
ENSMUSG00000027500.11_8574420_8625550_1	chr3	+	957	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	1116	0	-1085	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	10	True	NA	NA	NA	8574419	8625550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027500.11_8574575_8625550_1	chr3	+	802	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	155	1116	0	-1085	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	10	True	NA	NA	NA	8574574	8625550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027500.11_8574575_8626666_1	chr3	+	916	6	NIC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_5	694.848357557244	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574574	8626666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325_8625397_8626398
ENSMUSG00000027500.11_8574575_8626666_2	chr3	+	1918	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	155	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574574	8626666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027502.12_172282522_172310791_1	chr2	+	1090	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	46	1037	0	-1037	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCGTGGTCACTTGCTG	NA	False	NA	10	True	TATAAA	-21	NA	172282521	172310791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUSG00000027506.16_8994494_9069545_1	chr3	-	2238	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	238	3841	-7	164	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	-3	True	AATATA	-17	NA	9069545	8994493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027506.16_8994658_9069545_1	chr3	-	2074	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	238	4005	-7	0	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9069545	8994657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027506.16_8995674_9069545_1	chr3	-	1058	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	238	5021	-7	174	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCAGCTACATTTTTTTT	NA	False	NA	-3	True	ATTAAA	-37	NA	9069545	8995673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027509.12_172841917_172857532_1	chr2	+	1609	12	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	326.651961776187	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTCCAAGTTTCTC	NA	False	NA	85	True	NA	NA	NA	172841916	172857532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_172842044_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
ENSMUSG00000027523.21_174172080_174188537_1	chr2	+	1550	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	198	-32	0	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174172079	174188537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027531.17_10379014_10396440_1	chr3	-	2128	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	59	1998	-8	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGAATACCATTTTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	10396440	10379013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ENSMUSG00000027531.17_10379134_10396440_1	chr3	-	2008	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	59	2118	-8	-120	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGGCACTGTAATGAC	NA	False	NA	-21	True	ATTAAA	-16	NA	10396440	10379133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ENSMUSG00000027531.17_10379925_10396440_1	chr3	-	1217	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	59	2909	-8	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTTCTCTATGTTCCA	NA	False	NA	NA	False	NA	NA	NA	10396440	10379924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ENSMUSG00000027533.11_10077665_10081395_1	chr3	+	658	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	57	272	0	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGATATGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-15	NA	10077664	10081395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
ENSMUSG00000027534.17_10483997_10505147_1	chr3	-	1497	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	791	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	10505147	10483996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUSG00000027536.7_10432018_10455111_1	chr3	+	851	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	5286	0	-5286	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCAGAGACCTGTTTTAT	NA	False	NA	15	True	CATAAA	-22	NA	10432017	10455111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027536.7_10432018_10455459_1	chr3	+	1199	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	4938	0	-4938	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCTAGTGAGTCTATG	NA	False	NA	9	True	AATAAA	-18	NA	10432017	10455459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027540.14_167774292_167818845_1	chr2	+	1708	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	45	2460	0	2188	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTACAACACATTGTTGT	1105	False	NA	NA	False	NA	NA	NA	167774291	167818845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ENSMUSG00000027555.9_14706787_14726867_1	chr3	+	1104	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	1195	0	-1195	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCAGCCTTCCTGAC	2179	False	NA	9	True	ATTAAA	-14	NA	14706786	14726867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUSG00000027560.5_170717845_170721689_1	chr2	+	703	2	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	144118	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170717844	170721689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_170717952_170721093
ENSMUSG00000027573.12_180352058_180360296_1	chr2	+	1277	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	148	230	148	-227	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGTGGGTATTGAGT	NA	False	NA	35	True	TATAAA	-26	NA	180352057	180360296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUSG00000027573.12_180352058_180360526_1	chr2	+	1507	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	148	0	148	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180352057	180360526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUSG00000027575.20_180609038_180623496_1	chr2	+	1880	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	11	823	0	3	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCTAGTTCTTTCTTC	4045	False	NA	NA	False	TTTAAA	-8	NA	180609037	180623496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUSG00000027593.16_154633016_154709165_1	chr2	+	1392	8	NIC	ENSMUSG00000027593.16	novel	1709	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	53.0813776484863	155	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_154633016_154709165_2	chr2	+	1475	9	NIC	ENSMUSG00000027593.16	novel	1747	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	44.2965856472031	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027597.16_154901610_154916376_1	chr2	-	2122	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	41	380	-9	-380	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	2327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	-20	True	ATTAAA	-21	NA	154916376	154901609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
ENSMUSG00000027599.10_19186308_19217243_1	chr3	-	2945	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	742	-14	-742	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTATTGTATTTTTAAA	NA	False	NA	-6	True	AATAAA	-20	NA	19217243	19186307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19187589_19217243_2	chr3	-	1664	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	2023	-14	-2023	multi-exon	FALSE	canonical	3	251	junction_6	16.1761140780679	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTCTACAAAAAGCTGTA	NA	False	NA	NA	False	AAAAAG	-11	NA	19217243	19187588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19188077_19217243_2	chr3	-	1176	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	2511	-14	-2511	multi-exon	FALSE	canonical	3	251	junction_6	16.1761140780679	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTATGTATGCTGCAT	NA	False	NA	NA	False	AATAAA	-25	NA	19217243	19188076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027601.14_19242429_19273374_1	chr3	+	1191	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	1607	0	-160	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTCTCCTTCCTTCTG	NA	False	NA	10	True	AGTAAA	-18	NA	19242428	19273374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027601.14_19242429_19273721_1	chr3	+	1538	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	1260	0	1	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGAGTCTCTGTGTTGC	NA	False	NA	6	True	CATAAA	-17	NA	19242428	19273721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027601.14_19242429_19274981_1	chr3	+	2798	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242428	19274981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027605.19_155359977_155404666_1	chr2	+	2822	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	109	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2116	False	NA	19	True	AATAAA	-23	NA	155359976	155404666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
ENSMUSG00000027613.16_155661752_155668611_1	chr2	-	947	6	NIC	ENSMUSG00000027613.16	novel	1500	6	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	639.961123819252	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	155668611	155661751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668565
ENSMUSG00000027613.16_155661752_155668611_2	chr2	-	1266	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	234	0	-28	0	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	1997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	155668611	155661751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ENSMUSG00000027618.18_155965570_155976247_1	chr2	-	1576	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5482	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	81.7823903722556	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGTCCTGATCCTTG	3208	False	NA	-13	True	AATAAA	-6	NA	155976247	155965569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976098
ENSMUSG00000027618.18_155974003_155986073_1	chr2	-	828	7	NNC	ENSMUSG00000027618.18	novel	1649	4	NA	NA	0	6424	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	101.365674663566	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTGTGTATTTGTGATT	3139	False	NA	NA	False	NA	NA	NA	155986073	155974002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_155974157_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ENSMUSG00000027620.17_155989159_156022106_1	chr2	-	2813	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	383	junction_15	737.860411025805	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022106	155989158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027620.17_155989159_156022106_2	chr2	-	2831	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	-10	-701	-2	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022106	155989158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027620.17_155989860_156022106_1	chr2	-	2112	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	383	junction_15	737.860411025805	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022106	155989859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027620.17_155989860_156022106_2	chr2	-	2039	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	-19	691	-2	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022106	155989859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_155989860_156022106_3	chr2	-	2057	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	52	701	-2	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022106	155989859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_156019509_156022106_1	chr2	-	755	4	ISM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	-37	228	-2	-228	5prime_fragment	FALSE	canonical	3	90	junction_1	977.365279150477	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTCTTGATGACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	156022106	156019508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_156019827_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027634.15_156770323_156833983_1	chr2	-	1535	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	-7	1058	-7	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATGTGTGTGCGAGCAC	5907	False	NA	-15	True	NA	NA	NA	156833983	156770322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ENSMUSG00000027639.17_156941321_156977013_1	chr2	-	1886	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	172	1868	0	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977013	156941320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUSG00000027639.17_156941321_156977126_1	chr2	-	1999	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	59	1868	0	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977126	156941320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUSG00000027642.16_157120979_157167977_1	chr2	+	2494	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	262	0	1	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157120978	157167977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027642.16_157121231_157167977_1	chr2	+	2242	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	252	262	-115	1	multi-exon	FALSE	canonical	3	1870	junction_1	194.730412606121	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157121230	157167977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027649.16_157579321_157733011_1	chr2	+	1919	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	523	0	-523	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGGGCTGACATTGTAT	NA	False	NA	14	True	ATTAAA	-14	NA	157579320	157733011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUSG00000027667.14_32564684_32574892_1	chr3	+	1845	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	276	90	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_32564813_32574892_1	chr3	+	1859	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	129	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3311	False	NA	22	True	AATAAA	-22	NA	32564812	32574892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027671.15_32762914_32781122_1	chr3	+	1752	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	258	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	1824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762913	32781122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUSG00000027671.15_32762914_32781122_2	chr3	+	1656	13	NIC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_11	397.893227930978	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762913	32781122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32779395_32779483_32780670
ENSMUSG00000027673.13_32791225_32805380_1	chr3	+	658	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	86	335	0	1	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	2700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGATTCTGTGGCTGGT	NA	False	NA	24	True	AATAAA	-26	NA	32791224	32805380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUSG00000027679.14_34131583_34135411_1	chr3	-	445	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	59	155	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ENSMUSG00000027680.16_34074247_34119907_1	chr3	+	3057	15	ISM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-10	3587	0	-3579	5prime_fragment	FALSE	canonical	3	1060	junction_7	79.2243005391551	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTTGCATTCTTTCC	4849	False	NA	7	True	AATAAA	-16	NA	34074246	34119907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267
ENSMUSG00000027680.16_34074247_34123487_1	chr3	+	2219	16	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	0	1	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34123487_2	chr3	+	1962	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	330.912972782204	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_34074247_34123487_3	chr3	+	2213	18	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	384.426270035524	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34123487_4	chr3	+	2040	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-10	984	0	1	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_34074247_34123487_5	chr3	+	2054	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	307.253858549815	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34124121_1	chr3	+	2766	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-10	-627	0	-350	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	1470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4849	False	NA	10	True	AATAAA	-14	NA	34074246	34124121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34124121_2	chr3	+	2674	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-10	350	0	-350	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4849	False	NA	10	True	AATAAA	-14	NA	34074246	34124121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027699.20_27151372_27207977_1	chr3	-	4066	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1860	False	NA	NA	False	AATAAA	-19	NA	27207977	27151371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ENSMUSG00000027702.8_30678416_30701908_1	chr3	-	1781	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	110	0	110	0	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30701908	30678415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027702.8_30678416_30701908_2	chr3	-	1625	10	NIC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	110	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	120.194287163187	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30701908	30678415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_30679052_30684121_30684249_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027703.17_30712869_30726583_1	chr3	+	788	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10834	3	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGTGGGAAGAATGATA	NA	False	NA	8	True	NA	NA	NA	30712868	30726583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_30713166_30714049_30714247_30726289
ENSMUSG00000027706.9_30847485_30864149_1	chr3	+	442	4	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	11263	0	8459	5prime_fragment	FALSE	canonical	3	760	junction_3	45.4923681023043	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGTGAAAAGGAAGATTCC	NA	False	NA	95	True	AAAAAG	-20	NA	30847484	30864149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970
ENSMUSG00000027706.9_30847485_30873893_2	chr3	+	1987	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	1519	0	-288	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	NA	False	NA	12	True	AATAAA	-15	NA	30847484	30873893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027706.9_30847485_30873893_3	chr3	+	1348	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	0	-288	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	154	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	NA	False	NA	12	True	AATAAA	-15	NA	30847484	30873893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
ENSMUSG00000027706.9_30847485_30874238_1	chr3	+	1693	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	0	57	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	6	True	AATAAA	-16	NA	30847484	30874238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
ENSMUSG00000027706.9_30847485_30874238_3	chr3	+	2332	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	1174	0	57	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	6	True	AATAAA	-16	NA	30847484	30874238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027708.15_35947815_35986985_1	chr3	-	2783	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	636	1561	0	-160	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATATTTGTGTGTGGC	NA	False	NA	-5	True	CATAAA	-17	NA	35986985	35947814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027715.10_36619014_36626113_1	chr3	-	2779	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	186	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	36626113	36619013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
ENSMUSG00000027715.10_36620127_36626113_1	chr3	-	1666	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	186	1113	0	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGTCAAAGTTAATCTG	NA	False	NA	-16	True	AATAAA	-17	NA	36626113	36620126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
ENSMUSG00000027746.14_53764012_53771251_1	chr3	-	1675	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	3215	0	1231	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTTCAGGAACAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	53771251	53764011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027746.14_53764674_53771251_1	chr3	-	1013	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	3877	0	569	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCTTTTTGAGGATTCT	NA	False	NA	-3	True	AATAAA	-24	NA	53771251	53764673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027746.14_53764837_53771251_1	chr3	-	850	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	4040	0	406	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTATGAGTATAAGTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	53771251	53764836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027752.16_54636103_54642467_1	chr3	-	949	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	347	4	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	2004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642467	54636102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027752.16_54636103_54642467_2	chr3	-	961	11	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_6	627.010334843055	1987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642467	54636102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639651_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027774.17_67337449_67382401_1	chr3	+	2597	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	20	1461	0	264	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	AGTAAA	-31	NA	67337448	67382401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
ENSMUSG00000027775.10_67490074_67510422_1	chr3	+	1863	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	1148	0	-1148	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCACTGTGTCCTAGAG	NA	False	NA	6	True	AATAAA	-17	NA	67490073	67510422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUSG00000027777.16_68479789_68533799_1	chr3	+	1521	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	211	-2	211	2	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTTTTGCTCACTAACA	NA	False	NA	24	True	AATAAA	-26	NA	68479788	68533799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027787.15_69629416_69656380_1	chr3	+	1614	15	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	2	45	junction_3	244.19793744637	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	16	True	AATAAA	-26	NA	69629415	69656380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_69629456_69629741_69629800_69631589_69631725_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027787.15_69629416_69656380_2	chr3	+	1479	14	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	260.373218702983	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	16	True	AATAAA	-26	NA	69629415	69656380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_69629456_69629741_69629800_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027787.15_69629416_69656380_3	chr3	+	1711	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	98	7326	0	5	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	1190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	16	True	AATAAA	-26	NA	69629415	69656380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027804.14_79498672_79510584_1	chr3	+	1379	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	373	0	1	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	1790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAATCTCATTTTAAAATG	NA	False	NA	17	True	AATAAA	-16	NA	79498671	79510584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUSG00000027804.14_79498672_79511121_1	chr3	+	1916	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	-164	0	164	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	2609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTATTTATGACAAATAC	NA	False	NA	NA	False	AATAAA	-25	NA	79498671	79511121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUSG00000027808.9_58429390_58433174_1	chr3	-	2320	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	139	2152	139	-2152	multi-exon	FALSE	canonical	3	847	junction_1	36.5	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	18	True	AATAAA	-36	NA	58433174	58429389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027808.9_58429390_58433313_1	chr3	-	2459	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	2152	0	-2152	multi-exon	FALSE	canonical	3	847	junction_1	36.5	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	18	True	AATAAA	-36	NA	58433313	58429389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027808.9_58431011_58433174_1	chr3	-	699	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	139	3773	139	-3773	multi-exon	FALSE	canonical	3	847	junction_1	36.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGTAGTAGACCATAC	NA	False	NA	-16	True	AATAAA	-22	NA	58433174	58431010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027809.15_79511110_79536046_1	chr3	-	2238	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	124	15	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAGCATTTATTTATTTA	3708	False	NA	-15	True	AATAAA	-15	NA	79536046	79511109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ENSMUSG00000027810.15_58433464_58464922_1	chr3	+	2077	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	222	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	73.3195163601748	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433463	58464922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUSG00000027820.13_63202869_63247563_1	chr3	+	1025	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	0	-4477	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63202868	63247563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
ENSMUSG00000027820.13_63202869_63288844_1	chr3	+	3522	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	0	-200	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCCTGTGTGCACGCCA	NA	False	NA	10	True	AATAAA	-21	NA	63202868	63288844	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ENSMUSG00000027822.17_63849751_63872087_1	chr3	-	3048	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	102	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872087	63849750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ENSMUSG00000027823.10_63883527_63924174_1	chr3	+	2279	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	0	5826	0	-5826	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	16	True	AATAAA	-16	NA	63883526	63924174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
ENSMUSG00000027835.12_75424280_75464118_1	chr3	-	1399	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	45	483	0	303	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGTCCTTAATCACTT	NA	False	NA	-14	True	AATAAA	-17	NA	75464118	75424279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUSG00000027835.12_75424426_75464118_1	chr3	-	1253	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	45	629	0	157	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCTTTACTTGAAAAAA	NA	False	NA	-1	True	AATAAA	-19	NA	75464118	75424425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUSG00000027852.15_102965664_102971971_1	chr3	+	1148	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	3259	0	256	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTGTTGCTGATT	NA	False	NA	8	True	CATAAA	-18	NA	102965663	102971971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965664_102972102_1	chr3	+	1279	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	3128	0	387	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCTTTTTCCTAAAAGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	102965663	102972102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965664_102973140_1	chr3	+	2317	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	2090	0	-652	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGAATGTAAAATGCCA	NA	False	NA	8	True	AATAAA	-22	NA	102965663	102973140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027854.13_102903046_102909531_1	chr3	+	1109	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	22	6244	0	21	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTTTTTCTTCCACT	NA	False	NA	22	True	AATACA	-18	NA	102903045	102909531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027854.13_102903046_102910797_1	chr3	+	2375	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	22	4978	0	1287	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGCTCATTTTACTGAG	NA	False	NA	18	True	AATAAA	-15	NA	102903045	102910797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027860.16_102070502_102073256_1	chr3	-	649	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	-177	0	0	multi-exon	FALSE	canonical	3	141	junction_2	87.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102073256	102070501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_102070850_102072670_102072804_102073088
ENSMUSG00000027865.11_100069834_100113971_1	chr3	+	2545	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	137	326	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTCTTCTCAGAGTCA	NA	False	NA	22	True	AGTAAA	-33	NA	100069833	100113971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
ENSMUSG00000027881.15_108810904_108819026_1	chr3	-	2228	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	17	781	0	-441	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTTGTAGGTGTGA	6867	False	NA	-2	True	AATAAA	-16	NA	108819026	108810903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUSG00000027884.17_108561274_108586156_1	chr3	+	2069	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	126	junction_1	23.1716555264122	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6641	False	NA	6	True	AATAAA	-18	NA	108561273	108586156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUSG00000027893.15_107570436_107577235_1	chr3	-	2645	9	ISM	ENSMUSG00000027893.15	ENSMUST00000144864.8	1689	10	655	-1363	-410	0	3prime_fragment	FALSE	canonical	3	702	junction_5	32.961862432211	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107577235	107570435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207
ENSMUSG00000027900.16_106455197_106481247_1	chr3	+	1229	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1959	0	-914	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTAGTGTTTGCTACT	NA	False	NA	6	True	AATAAA	-15	NA	106455196	106481247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481775_1	chr3	+	1757	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1431	0	-386	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTGTTCAGTAGTGTA	NA	False	NA	4	True	AATAAA	-13	NA	106455196	106481775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106482161_1	chr3	+	2143	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1045	0	0	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455196	106482161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027905.16_105585586_105594768_1	chr3	-	2783	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	122	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594768	105585585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
ENSMUSG00000027931.13_90357898_90362400_1	chr3	-	960	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10773	0	2383	0	intron_retention	FALSE	canonical	3	97	junction_2	38	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362400	90357897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_90358490_90358612_90358705_90362124
ENSMUSG00000027937.16_90138904_90143145_1	chr3	+	1296	4	FSM	ENSMUSG00000027937.16	ENSMUST00000157045.8	840	4	-37	-419	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	162.68852312181	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90139348_90139501_90139819_90141229_90141310_90142690
ENSMUSG00000027940.19_89986972_90007911_1	chr3	+	1808	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	125	297	0	-292	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	9	True	TTTAAA	-6	NA	89986971	90007911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUSG00000027940.19_89986972_90008203_1	chr3	+	2100	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	125	5	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	1517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986971	90008203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUSG00000027940.19_89986972_90008203_2	chr3	+	2179	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986971	90008203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ENSMUSG00000027942.18_89960121_89969749_1	chr3	+	1611	7	FSM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	0	899	0	0	multi-exon	FALSE	canonical	3	422	junction_3	33.2549077413979	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATCATTTCTTTAGA	NA	False	NA	7	True	AATAAA	-17	NA	89960120	89969749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944
ENSMUSG00000027944.14_89902763_89905945_1	chr3	-	1170	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
ENSMUSG00000027952.17_89366425_89402839_1	chr3	+	999	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	0	26519	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	230.312152306386	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTGTGGCTGTGTTGTC	140	False	NA	NA	False	NA	NA	NA	89366424	89402839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402534
ENSMUSG00000027952.17_89366638_89376316_1	chr3	+	977	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	213	4	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGCTGGAGACTGAT	353	False	NA	17	True	AATAAA	-16	NA	89366637	89376316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUSG00000027997.10_129695107_129707599_1	chr3	+	1270	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	33	153	0	-153	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACACTTTCTAATTCCTA	NA	False	NA	7	True	AATAAA	-16	NA	129695106	129707599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUSG00000028010.17_129618568_129624784_1	chr3	-	1003	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	261	7	-203	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624784	129618567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUSG00000028010.17_129618568_129624784_3	chr3	-	1029	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	-203	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	1021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624784	129618567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
ENSMUSG00000028016.10_132797699_132815307_1	chr3	+	1561	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	98	1442	0	-1442	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTATTGTTTGTTACATT	NA	False	NA	8	True	AATAAA	-14	NA	132797698	132815307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
ENSMUSG00000028029.12_132366260_132389611_1	chr3	-	1205	8	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	420.18387617318	1177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389611	132366259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132383016_132383130_132389553
ENSMUSG00000028034.16_151916119_151938408_1	chr3	+	2407	20	NNC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	394.085926482441	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938408_2	chr3	+	2416	20	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	368.587759275981	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938408_3	chr3	+	2476	21	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	490.410182908145	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028040.8_89241047_89245335_1	chr3	-	1249	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	350	0	-350	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTGGCTCACACCTGT	1612	False	NA	-12	True	AATAAA	-18	NA	89245335	89241046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUSG00000028044.7_89322779_89325585_1	chr3	-	744	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	105	0	-59	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325585	89322778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUSG00000028062.16_88457126_88460210_1	chr3	-	547	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	121	0	-10	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1098	False	NA	-6	True	AATAAA	-14	NA	88460210	88457125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUSG00000028062.16_88459537_88460210_1	chr3	-	396	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	171	0	-10	0	multi-exon	FALSE	canonical	3	2467	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGTACGGTGCTGGCC	1098	False	NA	NA	False	AATAAA	-22	NA	88460210	88459536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88459825_88460102
ENSMUSG00000028066.16_88301450_88317633_1	chr3	-	1099	6	FSM	ENSMUSG00000028066.16	ENSMUST00000192365.2	802	6	-61	-236	0	0	multi-exon	FALSE	canonical	0	0	junction_2	418.733614604799	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88301878_88303020_88303118_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUSG00000028070.8_87963827_87965825_1	chr3	-	817	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	382.924519324631	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965825	87963826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_87964084_87964292_87964441_87965227_87965339_87965436_87965546_87965633
ENSMUSG00000028070.8_87963827_87965825_2	chr3	-	783	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	75	junction_1	350.462908165757	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965825	87963826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_87964084_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUSG00000028081.7_86045247_86049903_1	chr3	-	871	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	106	0	106	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	30466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86049903	86045246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ENSMUSG00000028085.13_85481434_85561471_1	chr3	+	2003	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	8	1458	0	6	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCGTGGGTGCTTTGTA	NA	False	NA	15	True	AATAAA	-19	NA	85481433	85561471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
ENSMUSG00000028089.6_97468058_97517508_1	chr3	-	2973	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	105	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517508	97468057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ENSMUSG00000028089.6_97479720_97517508_1	chr3	-	2023	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	0	-1369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	71.5978274034128	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTAAAAGCATTGGTCA	NA	False	NA	NA	False	AATAAA	-32	NA	97517508	97479719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ENSMUSG00000028093.16_97066412_97083834_1	chr3	+	1379	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	319	56	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCATGTTGAGATCAA	NA	False	NA	17	True	AATAAA	-17	NA	97066411	97083834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUSG00000028096.14_96778409_96812628_1	chr3	-	1752	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	34	2812	0	393	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCCTTGGGGTCACTT	1897	False	NA	-28	True	AGTAAA	-15	NA	96812628	96778408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
ENSMUSG00000028098.14_96634988_96698267_1	chr3	+	2000	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	8	201	0	-201	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAAAGCTCATTTTTC	4803	False	NA	21	True	ATTAAA	-21	NA	96634987	96698267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ENSMUSG00000028099.9_96618839_96634791_1	chr3	-	2204	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	153	33	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634791	96618838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
ENSMUSG00000028100.12_96613384_96615863_1	chr3	-	1147	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	-8	-100	0	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615863	96613383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
ENSMUSG00000028102.16_96542790_96552042_1	chr3	+	1740	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	44	640	-26	0	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542789	96552042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028102.16_96542969_96552042_1	chr3	+	1561	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	223	640	0	0	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542968	96552042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028109.15_95466988_95494907_1	chr3	+	1381	15	NIC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	83.0812240877466	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_95467035_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_95466988_95495172_1	chr3	+	1655	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	-1	-269	0	190	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTGTGTTATTAACAAC	NA	False	NA	9	True	ATTAAA	-20	NA	95466987	95495172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028114.17_123161946_123179604_1	chr3	-	2588	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	153	0	-24	0	multi-exon	TRUE	canonical	3	213	junction_2	25.8534330408942	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179604	123161945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUSG00000028126.17_95004354_95014186_1	chr3	-	837	2	NNC	ENSMUSG00000028126.17	novel	724	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1253	False	NA	NA	False	AATAAA	-33	NA	95014186	95004353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_95004691_95013686
ENSMUSG00000028127.11_121552556_121608846_1	chr3	-	3384	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	105	0	0	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7236	False	NA	-1	True	ATTAAA	-22	NA	121608846	121552555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
ENSMUSG00000028133.18_120949495_120965344_1	chr3	-	1036	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	448	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGTTTTCATGTTTA	NA	False	NA	-3	True	ATTAAA	-13	NA	120965344	120949494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUSG00000028136.16_94408434_94489869_1	chr3	-	1730	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	-13	1814	-13	0	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAAAAGTCACTATGT	NA	False	NA	NA	False	AAGAAA	-5	NA	94489869	94408433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
ENSMUSG00000028138.9_138148872_138161077_1	chr3	+	1403	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	18	183	0	73	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	3601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGAGTTGAACAT	4942	False	NA	17	True	AATAAA	-14	NA	138148871	138161077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUSG00000028145.10_94217560_94239847_1	chr3	+	1617	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	164	0	117	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217559	94239847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUSG00000028156.13_138233046_138261975_1	chr3	+	1376	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-815	0	0	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGATCTATGTCTGTG	NA	False	NA	73	True	NA	NA	NA	138233045	138261975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028156.13_138233046_138262218_1	chr3	+	1619	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-1058	0	243	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACTAGATTTGTCCTTT	NA	False	NA	24	True	AATAAA	-25	NA	138233045	138262218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028156.13_138233046_138262670_1	chr3	+	2071	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-1510	0	695	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATTGGTCAATTGTTG	NA	False	NA	12	True	AATAAA	-27	NA	138233045	138262670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028159.15_137638444_137687291_1	chr3	-	1392	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	15	1676	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGTTGCTTTTGTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	137687291	137638443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
ENSMUSG00000028164.16_135250543_135277165_1	chr3	+	2437	9	ISM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	59171	0	126	0	3prime_fragment	FALSE	canonical	3	121	junction_1	15.4793208830362	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	8294	False	NA	11	True	AATAAA	-19	NA	135250542	135277165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUSG00000028165.10_135113616_135129165_1	chr3	-	1397	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	1443	0	-1443	multi-exon	FALSE	canonical	3	215	junction_1	1	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTCTTGTTGTATTTT	NA	False	NA	-1	True	TTTAAA	-4	NA	135129165	135113615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028165.10_135114222_135129165_1	chr3	-	791	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	2049	0	1551	multi-exon	FALSE	canonical	3	215	junction_1	1	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTTCTGTTAAATGT	NA	False	NA	-14	True	AATACA	-18	NA	135129165	135114221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028175.16_159219872_159235592_1	chr3	+	2032	9	ISM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	18777	-496	18777	0	3prime_fragment	FALSE	canonical	3	16	junction_5	17.3776976323102	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	AATAAA	-20	NA	159219871	159235592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUSG00000028179.13_157599885_157630700_1	chr3	-	1777	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295.476545412472	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630700	157599884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_157599898_157599921_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUSG00000028179.13_157600060_157630700_1	chr3	-	1626	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	14	175	-12	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	-18	True	ATTAAA	-19	NA	157630700	157600059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUSG00000028180.19_157240013_157252440_2	chr3	+	1101	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	216	1607	0	0	multi-exon	FALSE	canonical	3	697	junction_8	81.8057017542553	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTCATTTGGTCAGA	NA	False	NA	NA	False	TTTAAA	-42	NA	157240012	157252440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUSG00000028180.19_157240013_157253978_1	chr3	+	2639	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	216	69	0	5	multi-exon	FALSE	canonical	3	697	junction_8	81.8057017542553	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTGTTGTTTATTAGAA	NA	False	NA	16	True	AATAAA	-17	NA	157240012	157253978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUSG00000028187.11_146212099_146227166_1	chr3	-	1255	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	18	388	0	0	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAGGTATTAAAGTCC	NA	False	NA	-3	True	AATAAA	-25	NA	146227166	146212098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ENSMUSG00000028199.19_154302859_154328819_1	chr3	+	1996	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	511	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	18	True	AGTAAA	-18	NA	154302858	154328819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUSG00000028212.17_11191736_11204454_1	chr4	+	2674	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	6	228	0	-221	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTAACTGCTTAAAAGT	315	False	NA	3	True	AATAAA	-13	NA	11191735	11204454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUSG00000028218.20_12153724_12171871_1	chr4	-	1174	8	NIC	ENSMUSG00000028218.20	novel	1292	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	135.606423302203	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	126	False	NA	-42	True	ATTAAA	-39	NA	12171871	12153723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028221.4_14864219_14914100_1	chr4	+	1120	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	143	1076	143	-1076	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAAAGGTATTTTTGCAT	-49	True	NA	NA	False	AATAAA	-23	NA	14864218	14914100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ENSMUSG00000028221.4_14864219_14915265_1	chr4	+	2285	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	143	-89	143	89	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTGTTCTATTTCTTC	-49	True	NA	10	True	AATAAA	-17	NA	14864218	14915265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ENSMUSG00000028221.4_14864320_14915265_1	chr4	+	2184	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	244	-89	244	89	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTGTTCTATTTCTTC	52	True	NA	10	True	AATAAA	-17	NA	14864319	14915265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ENSMUSG00000028223.9_15918927_15945367_1	chr4	-	1132	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	140	1687	-92	-1687	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTAGTTCTGAGGATC	6	True	NA	-28	True	AATAAA	-16	NA	15945367	15918926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
ENSMUSG00000028229.12_19575162_19606209_1	chr4	+	1056	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	-45	723	0	-723	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGTATGGCTTTTTTTC	-16	True	NA	12	True	TATAAA	-20	NA	19575161	19606209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
ENSMUSG00000028233.7_3574875_3585502_1	chr4	+	529	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	0	31117	0	1571	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGAAGCGGTATTTAGA	-18	True	NA	NA	False	AATAAA	-28	NA	3574874	3585502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
ENSMUSG00000028234.7_3834473_3835665_1	chr4	-	567	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	0	3139	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	25426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	NA	False	NA	-40	True	AATAAA	-15	NA	3835665	3834472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ENSMUSG00000028243.6_6191098_6216563_1	chr4	+	1517	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	5125	0	-5125	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTTGTCCTTGTGTTT	-10	True	NA	NA	False	TTTAAA	-20	NA	6191097	6216563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ENSMUSG00000028247.3_21879673_21910769_1	chr4	+	1258	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	1393	0	-1393	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTGTCACCTAAGAGA	-10	True	NA	23	True	AATAAA	-25	NA	21879672	21910769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028247.3_21879673_21910945_1	chr4	+	1434	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	1217	0	-1217	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTGTCTATGGTATT	-10	True	NA	NA	False	NA	NA	NA	21879672	21910945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028248.16_21848058_21862123_1	chr4	+	903	6	ISM	ENSMUSG00000028248.16	ENSMUST00000108229.2	2922	8	0	9219	0	0	5prime_fragment	FALSE	canonical	3	402	junction_3	41.0346195303429	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGATGCGGAAGGAGG	-1	True	NA	71	True	AAAAAG	-12	NA	21848057	21862123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986
ENSMUSG00000028248.16_21848058_21875256_1	chr4	+	2851	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	475	1219	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	-1	True	NA	13	True	AATAAA	-25	NA	21848057	21875256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
ENSMUSG00000028249.16_6365708_6395437_1	chr4	+	1840	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	58	847	0	-218	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTAATATCTAATTTGG	-1	True	NA	13	True	AATAAA	-25	NA	6365707	6395437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028249.16_6365708_6396120_1	chr4	+	2523	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	58	164	0	-164	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGTGTTTGTTTCAT	-1	True	NA	NA	False	AAGAAA	-1	NA	6365707	6396120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028252.21_21727767_21747652_1	chr4	+	1084	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	12	310	0	-310	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTGTTATCATTACCATA	7	True	NA	NA	False	AATAAA	-24	NA	21727766	21747652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUSG00000028252.21_21727767_21749270_1	chr4	+	2048	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	41	1276	0	716	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTGACTTCCTGGT	7	True	NA	NA	False	AATAAA	-16	NA	21727766	21749270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ENSMUSG00000028261.14_24898083_24902217_1	chr4	+	1118	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	-48	1288	0	-1268	multi-exon	FALSE	canonical	3	446	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTTCTTTGTAGT	-37	True	NA	19	True	ATTAAA	-19	NA	24898082	24902217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_24898677_24901693
ENSMUSG00000028261.14_24898083_24902217_2	chr4	+	848	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	2784	0	-1268	multi-exon	FALSE	canonical	3	446	junction_2	23.5	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTTCTTTGTAGT	-37	True	NA	19	True	ATTAAA	-19	NA	24898082	24902217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028261.14_24898083_24902372_1	chr4	+	1003	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	2629	0	-1113	multi-exon	FALSE	canonical	3	446	junction_2	23.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATATTACTACTCTAGAG	-37	True	NA	NA	False	AAGAAA	-31	NA	24898082	24902372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028261.14_24898083_24903505_1	chr4	+	2136	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	1496	0	0	multi-exon	FALSE	canonical	3	446	junction_2	23.5	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	-37	True	NA	14	True	AATAAA	-27	NA	24898082	24903505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028271.10_142470984_142489367_1	chr3	+	1277	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	178	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470983	142489367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUSG00000028274.18_33310328_33500916_1	chr4	+	2442	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	17	1698	0	2	multi-exon	TRUE	canonical	3	214	junction_12	34.6965256025569	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTCTTCTGGTTTTGTT	-19	True	NA	15	True	ATTAAA	-28	NA	33310327	33500916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
ENSMUSG00000028292.15_34614978_34660164_1	chr4	+	1947	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_9	178.38710715744	520	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	9	True	NA	9	True	AATAGA	-24	NA	34614977	34660164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028293.15_34663257_34687255_1	chr4	-	1856	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	183	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	205	False	NA	-13	True	AATAAA	-14	NA	34687255	34663256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUSG00000028312.20_52439252_52451007_1	chr4	+	1038	8	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	9	37253	0	-321	5prime_fragment	FALSE	canonical	3	347	junction_1	45.1758468969553	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCAATTGTGAAATCG	-10	True	NA	NA	False	AATAAA	-1	NA	52439251	52451007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819
ENSMUSG00000028318.15_45018662_45032365_1	chr4	+	1580	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	79	1327	0	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCCTTTCATGTTGC	14	True	NA	19	True	ATTAAA	-24	NA	45018661	45032365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
ENSMUSG00000028330.9_46138747_46172403_1	chr4	+	2876	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	134	0	134	0	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-7	True	NA	21	True	AATAAA	-21	NA	46138746	46172403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
ENSMUSG00000028333.11_46451259_46472657_1	chr4	+	1359	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	357	0	357	0	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	107	False	NA	8	True	AATAAA	-20	NA	46451258	46472657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46451261_46472523_1	chr4	+	1223	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	359	134	359	-134	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	109	False	NA	19	True	AATAAA	-15	NA	46451260	46472523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46468705_46472523_1	chr4	+	715	4	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	17803	134	17803	-134	3prime_fragment	FALSE	canonical	3	5793	junction_2	213.552491595548	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	14	False	NA	19	True	AATAAA	-15	NA	46468704	46472523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46468771_46472657_1	chr4	+	783	4	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	17869	0	17869	0	3prime_fragment	FALSE	canonical	3	5793	junction_2	213.552491595548	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	48	False	NA	8	True	AATAAA	-20	NA	46468770	46472657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028334.11_46489319_46502674_1	chr4	+	1009	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	0	-958	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	361.736146935857	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	3	True	NA	12	True	AATAAA	-25	NA	46489318	46502674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500914_46502509
ENSMUSG00000028334.11_46489319_46502674_2	chr4	+	1150	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	71	958	0	-958	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	3	True	NA	12	True	AATAAA	-25	NA	46489318	46502674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUSG00000028343.11_48194364_48279572_1	chr4	-	1597	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-14	1041	-14	126	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGGACAGTCTTTA	6	True	NA	1	True	AATAAA	-27	NA	48279572	48194363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028343.11_48194490_48279572_1	chr4	-	1471	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-14	1167	-14	0	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	6	True	NA	-28	True	AATAAA	-14	NA	48279572	48194489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028367.6_57943757_57956291_1	chr4	-	547	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	120	384	120	-384	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	6222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATGTGTTTTAATA	-1	True	NA	-3	True	AATAAA	-25	NA	57956291	57943756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUSG00000028367.6_57943757_57956411_1	chr4	-	667	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	384	0	-384	multi-exon	FALSE	canonical	3	4612	junction_4	90.890043459116	6337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATGTGTTTTAATA	24	False	NA	-3	True	AATAAA	-25	NA	57956411	57943756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUSG00000028378.7_58966517_58987119_1	chr4	-	1218	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	1078	0	-1078	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	5	True	NA	-5	True	AATAAA	-24	NA	58987119	58966516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ENSMUSG00000028383.18_59581563_59618067_1	chr4	+	1989	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	622	0	-621	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTTATGTAAAATGAAGC	0	True	NA	8	True	AATAAA	-18	NA	59581562	59618067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
ENSMUSG00000028391.17_62371971_62389136_1	chr4	-	1459	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	-12	1102	-3	-100	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389136	62371970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
ENSMUSG00000028391.17_62371971_62389136_2	chr4	-	1352	11	FSM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	-12	100	-3	-100	multi-exon	FALSE	canonical	3	150	junction_2	19.4548194543152	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389136	62371970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
ENSMUSG00000028394.10_62442035_62443281_1	chr4	-	632	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	24	1149	-6	537	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCTTCCCAGGCTCAGA	NA	False	NA	-7	True	AATAAA	-23	NA	62443281	62442034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ENSMUSG00000028398.9_75195719_75196542_1	chr4	-	613	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	128	0	-128	multi-exon	FALSE	canonical	3	402	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTTCTCTGTCTTGTCC	NA	False	NA	-4	True	AATAAA	-16	NA	75196542	75195718	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_75196007_75196217
ENSMUSG00000028407.5_40269579_40270226_1	chr4	+	330	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	0	714	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGTGGCCTTTTGTGAT	-1	True	NA	7	True	AGTAAA	-17	NA	40269578	40270226	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40269720_40270037
ENSMUSG00000028409.12_40737117_40757840_1	chr4	-	1549	11	NIC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	-9	-575	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	388.074168168921	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	16	True	NA	-14	True	AATAAA	-17	NA	40757840	40737116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40757776
ENSMUSG00000028409.12_40737117_40757840_2	chr4	-	1760	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	83	575	-9	-575	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	1637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	16	True	NA	-14	True	AATAAA	-17	NA	40757840	40737116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ENSMUSG00000028410.14_40722559_40733106_1	chr4	+	1439	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1858	0	-794	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	2371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	22	False	NA	12	True	AATAAA	-18	NA	40722558	40733106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722559_40733325_1	chr4	+	1658	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1639	0	-575	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	2526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTAGTTACATGTCGGTC	22	False	NA	NA	False	ATTAAA	-32	NA	40722558	40733325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722559_40733900_1	chr4	+	2233	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1064	0	0	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	2928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	22	False	NA	5	True	AATATA	-17	NA	40722558	40733900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722930_40733106_1	chr4	+	1436	9	NIC	ENSMUSG00000028410.14	novel	5622	9	NA	NA	0	-794	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	944.437919809979	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-27	True	NA	12	True	AATAAA	-18	NA	40722929	40733106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_40723002_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722930_40733106_2	chr4	+	1571	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	8	4043	0	-794	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-27	True	NA	12	True	AATAAA	-18	NA	40722929	40733106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028411.16_40686242_40703162_1	chr4	-	1358	8	FSM	ENSMUSG00000028411.16	ENSMUST00000030119.10	5250	8	32	3860	0	0	multi-exon	FALSE	canonical	3	144	junction_6	8.59757915618919	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	8	True	NA	-8	True	AATATA	-17	NA	40703162	40686241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40703136
ENSMUSG00000028411.16_40686463_40703162_1	chr4	-	1137	8	FSM	ENSMUSG00000028411.16	ENSMUST00000030119.10	5250	8	32	4081	0	-221	multi-exon	FALSE	canonical	3	144	junction_6	8.59757915618919	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTTATTCTTGAGCAG	8	True	NA	NA	False	ACTAAA	-23	NA	40703162	40686462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40703136
ENSMUSG00000028411.16_40686463_40703162_2	chr4	-	1132	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	25	221	0	-221	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTTATTCTTGAGCAG	8	True	NA	NA	False	ACTAAA	-23	NA	40703162	40686462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
ENSMUSG00000028419.6_40948578_40965303_1	chr4	+	1348	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	171	0	171	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	15	True	NA	14	True	AATAAA	-16	NA	40948577	40965303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUSG00000028420.14_53826045_53860592_1	chr4	+	1435	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	1427	0	-1427	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	-16	True	NA	5	True	AATAAA	-14	NA	53826044	53860592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028423.16_40970906_41012608_1	chr4	+	3086	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	0	1263	0	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	6045	False	NA	16	True	NA	NA	NA	40970905	41012608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
ENSMUSG00000028426.11_55350050_55390762_1	chr4	+	2328	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	7	1475	0	-1475	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGCATGTTTGCTTTTG	-11	True	NA	22	True	AGTAAA	-14	NA	55350049	55390762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
ENSMUSG00000028426.11_55350050_55391207_1	chr4	+	2773	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	7	1030	0	-1030	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTGTTGGCTTTTATT	-11	True	NA	32	True	ATTAAA	-14	NA	55350049	55391207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
ENSMUSG00000028436.9_41292496_41314889_1	chr4	-	2246	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	1196	0	-1196	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTTTACTCAGAGTCCAG	1860	False	NA	-11	True	ATTAAA	-17	NA	41314889	41292495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUSG00000028436.9_41293011_41314889_1	chr4	-	1731	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	1711	0	-1711	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCAGTTTCCTTGTTTGA	1860	False	NA	-5	True	NA	NA	NA	41314889	41293010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUSG00000028437.15_41349048_41389060_1	chr4	+	1939	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	52	1465	0	368	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGTCCTTCCCACTTTG	1	True	NA	17	True	ATTAAA	-17	NA	41349047	41389060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
ENSMUSG00000028437.15_41349048_41389766_1	chr4	+	2645	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	52	759	0	0	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	1	True	NA	5	True	AATAAA	-14	NA	41349047	41389766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
ENSMUSG00000028447.12_41714947_41723163_1	chr4	-	817	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	7	149	0	-149	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-9	True	NA	NA	False	AATAAA	-18	NA	41723163	41714946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ENSMUSG00000028452.8_42980318_43000434_1	chr4	-	2888	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	73	355	-1	-355	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	1597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	1	True	NA	-4	True	AATAAA	-19	NA	43000434	42980317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028454.17_43017635_43019934_1	chr4	-	987	4	ISM	ENSMUSG00000028454.17	ENSMUST00000149333.8	2312	11	5146	0	-228	0	3prime_fragment	FALSE	canonical	3	191	junction_2	7.31816613336672	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	5878	False	NA	-7	True	AATAAA	-21	NA	43019934	43017634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646
ENSMUSG00000028455.16_43027690_43031402_1	chr4	-	1566	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	0	-32	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	1538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGAGATGGCTGTGGTG	0	True	NA	-4	True	AATAAA	-19	NA	43031402	43027689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_43028026_43031402_1	chr4	-	1230	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	336	-32	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	1516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028466.16_43562658_43566867_1	chr4	+	1365	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	326	193	-155	70	multi-exon	TRUE	canonical	3	77	junction_5	10.0615294563004	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTTTGCTCACGTGC	16	True	NA	14	True	AATAAA	-16	NA	43562657	43566867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUSG00000028466.16_43562658_43567061_1	chr4	+	1559	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	326	-1	-155	1	multi-exon	FALSE	canonical	3	77	junction_5	10.0615294563004	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTTTTTACTGGCACAG	16	True	NA	6	True	AATAAA	-15	NA	43562657	43567061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUSG00000028478.19_44003806_44032846_1	chr4	+	1540	6	NNC	ENSMUSG00000028478.19	novel	1121	6	NA	NA	-646	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	519.17110859523	1562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	NA	False	NA	21	True	AATAAA	-21	NA	44003805	44032846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_44003885_44012261_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUSG00000028479.19_44036826_44072673_1	chr4	-	2815	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	105	0	-49	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	-38	True	NA	-6	True	NA	NA	NA	44072673	44036825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
ENSMUSG00000028480.15_43957692_43979118_1	chr4	+	2029	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	291	0	0	0	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	-15	True	NA	36	True	AATAAA	-21	NA	43957691	43979118	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
ENSMUSG00000028484.17_83373917_83378161_1	chr4	-	1593	3	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	26535	0	368	0	3prime_fragment	FALSE	canonical	3	1107	junction_2	50.5	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATTAGTAAGTTATTAT	NA	False	NA	-4	True	ATTAAA	-16	NA	83378161	83373916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_83375317_83376311_83376424_83378080
ENSMUSG00000028494.13_86574943_86588231_1	chr4	-	1681	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	66	141	-8	-141	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGCTCCTGTGTGGTC	NA	False	NA	-21	True	AATAAA	-15	NA	86588231	86574942	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ENSMUSG00000028495.15_86772338_86775604_1	chr4	-	1392	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	45	-559	-13	559	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	28086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGCTCTTGATTTTTG	NA	False	NA	-2	True	AGTAAA	-20	NA	86775604	86772337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772661_86775604_1	chr4	-	1069	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	45	-236	-13	236	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	27853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTGTGCCTTTGAAACT	NA	False	NA	42	True	ATTAAA	-26	NA	86775604	86772660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028517.9_105014544_105088353_1	chr4	+	1551	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	1608	0	-1608	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTATCTTGTGGCCTTC	NA	False	NA	NA	False	AAAACA	-20	NA	105014543	105088353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
ENSMUSG00000028540.7_117746104_117749220_1	chr4	-	2282	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	9	264	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.70522184569608	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749220	117746103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
ENSMUSG00000028549.18_99655568_99717379_1	chr4	-	833	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	44	1929	-8	0	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTATGGAGCTCAGAG	NA	False	NA	58	True	NA	NA	NA	99717379	99655567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ENSMUSG00000028559.18_108918852_109059433_1	chr4	-	2796	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	36	-424	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059433	108918851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUSG00000028559.18_108919284_108975219_2	chr4	-	2153	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	14	437	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGTGGCAGTTACAA	NA	False	NA	-6	True	ATTAAA	-21	NA	108975219	108919283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUSG00000028568.17_108673644_108690770_1	chr4	-	948	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	41	2152	-9	271	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACTTTTTTTTTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	108690770	108673643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028568.17_108673796_108690770_1	chr4	-	796	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	41	2304	-9	119	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGTGGTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	108690770	108673795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028568.17_108673915_108690770_1	chr4	-	677	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	41	2423	-9	0	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGCTGTCTGCTCAG	NA	False	NA	NA	False	TATAAA	-13	NA	108690770	108673914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028581.18_130640436_130663452_1	chr4	+	2563	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	159.179487921654	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
ENSMUSG00000028581.18_130640625_130663452_1	chr4	+	2374	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	159.179487921654	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640624	130663452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
ENSMUSG00000028587.19_108436651_108471771_1	chr4	+	2755	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	259	0	-259	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTATTTTCCATTATTT	5272	False	NA	28	True	TATAAA	-1	NA	108436650	108471771	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028587.19_108436651_108471880_1	chr4	+	2864	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	150	0	-150	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTCTGGGAGAATTTGTA	5272	False	NA	8	True	NA	NA	NA	108436650	108471880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028597.12_108257587_108263921_1	chr4	-	1052	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	237	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	16.5	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108263921	108257586	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108258195_108260397_108260660_108263739
ENSMUSG00000028601.19_108022685_108036505_1	chr4	+	1534	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	22	-237	0	0	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022684	108036505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUSG00000028603.16_107901575_107975674_1	chr4	-	2046	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	55	539	-1	0	multi-exon	FALSE	canonical	3	305	junction_7	132.795314509043	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGGGGACTAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	107975674	107901574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ENSMUSG00000028608.16_107747066_107754315_2	chr4	+	675	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	56	2266	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747065	107754315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_107747066_107754999_1	chr4	+	1359	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	56	1582	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747065	107754999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028614.15_107225249_107271536_1	chr4	+	2309	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	268	2007	0	6	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGCGTCTATGGCAGCC	NA	False	NA	17	True	AATAAA	-18	NA	107225248	107271536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
ENSMUSG00000028617.11_107090714_107110530_1	chr4	-	1553	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	199	3	-173	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTTTTGAATTGC	NA	False	NA	-8	True	AATAAA	-17	NA	107110530	107090713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
ENSMUSG00000028618.12_107035923_107058193_1	chr4	+	1448	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	327	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035922	107058193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028619.16_106996015_107035563_1	chr4	-	1587	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	181	4663	0	452	multi-exon	FALSE	canonical	3	63	junction_1	11	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGCATAGTTTCCCCC	NA	False	NA	NA	False	AATAAA	-17	NA	107035563	106996014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ENSMUSG00000028633.8_120397346_120427473_1	chr4	-	2424	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	281	0	-281	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGGGTCTCTGGCTACAC	NA	False	NA	-13	True	TATAAA	-15	NA	120427473	120397345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ENSMUSG00000028633.8_120397663_120427473_1	chr4	-	2107	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	598	0	-598	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGCAGTTTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	120427473	120397662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ENSMUSG00000028636.15_119275727_119279454_1	chr4	-	1280	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	163	0	101	0	multi-exon	FALSE	canonical	3	273	junction_2	22	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5668	False	NA	-4	True	AATAAA	-30	NA	119279454	119275726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119276491_119278776_119278881_119279042
ENSMUSG00000028639.15_119135178_119138841_1	chr4	-	740	3	ISM	ENSMUSG00000028639.15	ENSMUST00000127737.2	1054	5	1148	-9	542	0	3prime_fragment	FALSE	canonical	3	262	junction_2	5340.5	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119138841	119135177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_119135565_119136130_119136409_119138766
ENSMUSG00000028639.15_119135178_119138841_2	chr4	-	728	3	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12960	0	542	0	3prime_fragment	FALSE	canonical	3	9851	junction_2	546	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119138841	119135177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_119135565_119136130_119136397_119138766
ENSMUSG00000028639.15_119135178_119151474_1	chr4	-	1301	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	327	0	203	0	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151474	119135177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ENSMUSG00000028639.15_119135178_119151697_1	chr4	-	1359	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3612.9610898451	1224	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151697	119135177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151565
ENSMUSG00000028645.12_118966001_118994527_1	chr4	+	2514	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	93	653	0	0	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	669	False	NA	36	True	TATAAA	-18	NA	118966000	118994527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028645.12_118966111_118994527_1	chr4	+	2404	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	203	653	0	0	multi-exon	FALSE	canonical	3	565	junction_3	58.8236535946402	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	779	False	NA	36	True	TATAAA	-18	NA	118966110	118994527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028647.14_123798834_123806062_1	chr4	+	1476	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	209	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTCTTTCTTTTTGGT	NA	False	NA	40	True	NA	NA	NA	123798833	123806062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUSG00000028648.14_123606503_123611974_1	chr4	-	481	3	NNC	ENSMUSG00000028648.14	novel	525	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	1049	1405	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1853	False	NA	-25	True	AATAAA	-17	NA	123611974	123606502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_123606720_123609656_123609852_123611905
ENSMUSG00000028651.13_123020908_123033744_1	chr4	-	1259	10	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	113	junction_6	304.035816603534	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000028651.13_123020908_123033744_2	chr4	-	1180	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_9	309.335169215497	439	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033702
ENSMUSG00000028656.15_122752840_122779657_1	chr4	-	2557	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	180	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779657	122752839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ENSMUSG00000028668.6_135732604_135749074_1	chr4	-	2783	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	0	1925	0	-1925	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGGGTTTTTTGTTTTT	7704	False	NA	-9	True	AATAAA	-28	NA	135749074	135732603	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
ENSMUSG00000028670.15_135695535_135699914_1	chr4	-	1679	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	0	0	intron_retention	TRUE	canonical	3	428	junction_2	20.3127884594902	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699914	135695534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUSG00000028673.11_135648046_135666600_1	chr4	+	1503	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	1022	0	0	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTGGTCAATCTCCCAA	NA	False	NA	20	True	AATAAA	-20	NA	135648045	135666600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
ENSMUSG00000028676.18_135583443_135586304_1	chr4	+	479	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	238	0	192	multi-exon	FALSE	canonical	3	381	junction_2	671.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGCTGGAAGAAGGACA	4706	False	NA	NA	False	AATAAA	-1	NA	135583442	135586304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135583603_135585615_135585783_135586152
ENSMUSG00000028676.18_135583443_135593126_1	chr4	+	3088	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_3	565.56856839428	650	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589091_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135593126_2	chr4	+	3098	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135593126_3	chr4	+	2671	6	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	578.7306800231	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135594696_2	chr4	+	844	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	0	-997	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTGGAAACTAATCCC	4706	False	NA	NA	False	NA	NA	NA	135583442	135594696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_135583443_135595693_1	chr4	+	1841	6	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGATTCCTTAGTTC	4706	False	NA	14	True	AATAAA	-21	NA	135583442	135595693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_135583443_135596093_1	chr4	+	2241	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	0	400	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCGTTTATTTCGAGAT	4706	False	NA	6	True	AATAAA	-17	NA	135583442	135596093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_135589131_135593126_1	chr4	+	2359	4	ISM	ENSMUSG00000028676.18	ENSMUST00000097844.9	3055	6	6073	0	0	0	3prime_fragment	FALSE	canonical	3	409	junction_2	374.65806633071	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	135589130	135593126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_135589189_135590350_135590514_135590836_135590888_135591039
ENSMUSG00000028677.20_117128661_117146362_1	chr4	-	1810	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	281	-8	-52	0	3prime_fragment	TRUE	canonical	0	0	junction_5	318.755914977798	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9851	False	NA	NA	False	ATTAAA	-14	NA	117146362	117128660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
ENSMUSG00000028677.20_117128661_117146362_2	chr4	-	1732	10	ISM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	207887	1	-52	0	3prime_fragment	FALSE	canonical	0	0	junction_5	365.792425790136	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9851	False	NA	NA	False	ATTAAA	-14	NA	117146362	117128660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222
ENSMUSG00000028684.15_116847414_116851561_1	chr4	-	1125	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	116.039594535658	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116851561	116847413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028684.15_116847414_116851561_2	chr4	-	1188	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	49	252	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116851561	116847413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028687.18_116664935_116676628_1	chr4	+	1732	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664934	116676628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUSG00000028688.14_116661199_116664489_1	chr4	-	1997	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	256	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2287	False	NA	0	True	TTTAAA	-42	NA	116664489	116661198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
ENSMUSG00000028688.14_116661199_116664745_2	chr4	-	1998	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	92	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2031	False	NA	0	True	TTTAAA	-42	NA	116664745	116661198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUSG00000028689.15_116565793_116572296_1	chr4	+	1543	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-334	4	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5643	False	NA	11	True	AATAAA	-15	NA	116565792	116572296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028690.5_116559631_116565529_1	chr4	-	1877	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	74	155	-44	-155	multi-exon	FALSE	canonical	3	184	junction_2	7.07106781186548	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACTTTGTTTGCCTGTTT	NA	False	NA	-2	True	AATACA	-31	NA	116565529	116559630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
ENSMUSG00000028690.5_116561586_116565529_1	chr4	-	561	3	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	74	2110	-44	0	5prime_fragment	FALSE	canonical	3	184	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCCGGCTAGATTTTT	NA	False	NA	NA	False	AATATA	-39	NA	116565529	116561585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_116561857_116563077_116563273_116565434
ENSMUSG00000028691.13_116542796_116556712_1	chr4	+	932	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	1307	0	243	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	5384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	31	True	ATTAAA	-16	NA	116542795	116556712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUSG00000028691.13_116542796_116557196_1	chr4	+	1416	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	823	0	727	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	5463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTTCATGCCTAGCT	NA	False	NA	8	True	NA	NA	NA	116542795	116557196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUSG00000028692.15_116493707_116508601_1	chr4	-	1144	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	276	0	-8	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508601	116493706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUSG00000028693.16_116458249_116484693_1	chr4	-	3092	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	445	-557	1	0	3prime_fragment	TRUE	canonical	3	774	junction_12	215.450595691155	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484693	116458248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_116458806_116468063_1	chr4	-	1509	10	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	17075	0	-4618	0	3prime_fragment	FALSE	canonical	3	898	junction_9	170.844597641277	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116468063	116458805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599
ENSMUSG00000028693.16_116458806_116468222_1	chr4	-	1668	10	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	16916	0	-4777	0	3prime_fragment	FALSE	canonical	3	898	junction_9	170.844597641277	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116468222	116458805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599
ENSMUSG00000028693.16_116458806_116484693_1	chr4	-	1560	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	1	557	1	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116484693	116458805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028702.16_115954172_115980868_1	chr4	-	2685	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980868	115954171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
ENSMUSG00000028702.16_115954172_115980868_2	chr4	-	2875	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980868	115954171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
ENSMUSG00000028706.15_115890202_115911073_1	chr4	-	2276	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	163	0	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTGTGCGTGCCTTG	NA	False	NA	-6	True	AGTAAA	-17	NA	115911073	115890201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
ENSMUSG00000028706.15_115890931_115911073_1	chr4	-	1547	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	892	0	173	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGGGCCTGCAGTTGGGT	NA	False	NA	-25	True	AATAAA	-19	NA	115911073	115890930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
ENSMUSG00000028708.17_115696430_115736447_1	chr4	+	2468	13	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	42.5606593255112	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028710.19_115642181_115669116_1	chr4	+	1765	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	0	395	0	48	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAATCTAGATTTGCATG	NA	False	NA	0	True	AATAAA	-16	NA	115642180	115669116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
ENSMUSG00000028719.9_114817835_114844346_1	chr4	-	1776	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	92	1302	0	-1302	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTTTCTTTCTTTAAAA	NA	False	NA	-5	True	AATAAA	-14	NA	114844346	114817834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ENSMUSG00000028719.9_114818773_114844346_1	chr4	-	838	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	92	2240	0	1535	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTTTTTTTTTTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	114844346	114818772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ENSMUSG00000028729.16_118478047_118483182_1	chr4	+	1118	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	51	1791	0	367	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	2418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGTTAAAACCAGAT	NA	False	NA	23	True	AATAAA	-23	NA	118478046	118483182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
ENSMUSG00000028745.19_138920250_139018577_1	chr4	+	1082	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	40	552	0	-174	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTCCAAGGCCTGCT	NA	False	NA	18	True	AATAAA	-18	NA	138920249	139018577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUSG00000028745.19_138920250_139018755_1	chr4	+	1260	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	40	374	0	4	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	1044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTGTGTGAGAGAAGAAA	NA	False	NA	14	True	AAAACA	-19	NA	138920249	139018755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUSG00000028757.5_138032186_138039537_1	chr4	+	1573	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	145	402	145	-402	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCACCTGGCCCCATGA	NA	False	NA	32	True	AATAAA	-18	NA	138032185	138039537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUSG00000028757.5_138032186_138039939_1	chr4	+	1975	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	145	0	145	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032185	138039939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUSG00000028772.20_130209695_130253721_2	chr4	-	1579	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	15	519	-12	377	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCGCTTTCCCTTGTATT	NA	False	NA	-1	True	CATAAA	-19	NA	130253721	130209694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_130209872_130253721_1	chr4	-	1344	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-12	200	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253721	130209871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
ENSMUSG00000028772.20_130209872_130253721_2	chr4	-	1402	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	15	696	-12	200	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253721	130209871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028773.9_130202533_130209256_1	chr4	+	839	5	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	145	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2159.9895109699	3568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202532	130209256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_130202644_130203234_130203396_130206083_130206257_130207746_130207849_130208964
ENSMUSG00000028773.9_130202533_130209256_2	chr4	+	678	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	145	0	145	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	3629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202532	130209256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUSG00000028797.21_129494493_129501685_1	chr4	+	890	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	0	629	0	15	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3196	False	NA	NA	False	NA	NA	NA	129494492	129501685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494493_129501685_2	chr4	+	781	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	20	636	0	15	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3196	False	NA	NA	False	NA	NA	NA	129494492	129501685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028798.17_129485753_129494413_1	chr4	-	1187	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	28	0	-4	0	intron_retention	FALSE	canonical	3	1341	junction_3	45.5241083871441	1933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6405	False	NA	0	True	AATAAA	-32	NA	129494413	129485752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ENSMUSG00000028800.16_129410199_129436484_1	chr4	-	1714	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	22	302	0	-138	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACCAGAAGAGAAAAATCC	8830	False	NA	NA	False	AAGAAA	-2	NA	129436484	129410198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028807.3_129247421_129271626_1	chr4	-	2038	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	283	0	283	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271626	129247420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ENSMUSG00000028811.13_129083695_129092218_1	chr4	+	1593	4	NNC	ENSMUSG00000028811.13	novel	647	3	NA	NA	0	984	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	863.960390038545	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAACTGCTTTAAAATG	855	False	NA	NA	False	AATAAA	-19	NA	129083694	129092218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_129083866_129090622_129090770_129090905_129091493_129091530
ENSMUSG00000028811.13_129083695_129104645_1	chr4	+	1294	8	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	8755	0	0	5prime_fragment	FALSE	canonical	3	1488	junction_7	138.160066884873	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATTTTAAAAGAAGTCT	855	False	NA	NA	False	NA	NA	NA	129083694	129104645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285
ENSMUSG00000028811.13_129083695_129112602_1	chr4	+	1969	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	798	0	146	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATGGTCCCTGTAATTG	855	False	NA	13	True	AATAGA	-19	NA	129083694	129112602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028811.13_129083695_129113029_1	chr4	+	2396	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	371	0	-371	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	855	False	NA	25	True	AATAAA	-15	NA	129083694	129113029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028820.14_126921066_126921884_1	chr4	+	739	2	ISM	ENSMUSG00000028820.14	ENSMUST00000125453.2	644	3	828	-542	828	76	3prime_fragment	FALSE	canonical	3	1050	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAACTGATGTTTCTACT	NA	False	NA	NA	False	NA	NA	NA	126921065	126921884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_126921110_126921189
ENSMUSG00000028820.14_126921066_126923760_1	chr4	+	307	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	1269	828	-1269	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGCTTTCATTCTAGTT	NA	False	NA	8	True	AATAAA	-19	NA	126921065	126923760	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126924075_1	chr4	+	622	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	954	828	-954	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATCTTCAACTTTGCT	NA	False	NA	11	True	AATAAA	-19	NA	126921065	126924075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126924589_1	chr4	+	1136	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	440	828	-440	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	434	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCATGTATTACTTC	NA	False	NA	17	True	ATTAAA	-17	NA	126921065	126924589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126930806_1	chr4	+	382	5	ISM	ENSMUSG00000028820.14	ENSMUST00000146285.8	925	10	3746	0	828	0	3prime_fragment	FALSE	canonical	3	77	junction_2	363.616126567566	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126921065	126930806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
ENSMUSG00000028821.9_134658321_134664475_1	chr4	+	873	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	112	384	0	-384	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATATGTTCACATTTT	NA	False	NA	19	True	AATAAA	-25	NA	134658320	134664475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUSG00000028822.12_134625160_134642326_1	chr4	-	1261	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	0	-542	0	0	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642326	134625159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
ENSMUSG00000028822.12_134625318_134642326_1	chr4	-	1037	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	9	158	0	-158	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAACAAAAGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	134642326	134625317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
ENSMUSG00000028836.15_134070517_134080242_1	chr4	+	1600	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	0	1553	0	254	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGAGGAAGATCTGAGG	2081	False	NA	5	True	GATAAA	-17	NA	134070516	134080242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
ENSMUSG00000028840.11_133971960_133972903_1	chr4	-	634	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	1360	0	-1342	multi-exon	FALSE	canonical	3	614	junction_2	27	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCACACCTCCGATACTAA	7668	False	NA	-29	True	AATAAA	-15	NA	133972903	133971959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133972242_133972335_133972399_133972614
ENSMUSG00000028857.17_132993356_133005089_1	chr4	-	1385	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	-8	-831	-8	0	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005089	132993355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
ENSMUSG00000028861.14_125940770_125949325_1	chr4	+	885	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	52	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940769	125949325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
ENSMUSG00000028863.14_124978958_124997675_1	chr4	+	998	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	0	379	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCATCAACAGATTCTT	NA	False	NA	14	True	ATTAAA	-20	NA	124978957	124997675	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
ENSMUSG00000028863.14_124978958_125003685_1	chr4	+	1173	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	31	3346	0	3	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCAGCTGCCTCTTTGGC	NA	False	NA	43	True	ACTAAA	-19	NA	124978957	125003685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ENSMUSG00000028863.14_124978958_125003685_2	chr4	+	1231	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	1	-178	0	3	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCAGCTGCCTCTTTGGC	NA	False	NA	43	True	ACTAAA	-19	NA	124978957	125003685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
ENSMUSG00000028868.14_132857851_132923305_1	chr4	+	1845	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	35	3762	0	-510	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTATCCGAGTGCTTCCT	NA	False	NA	28	True	AAGAAA	-37	NA	132857850	132923305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
ENSMUSG00000028873.17_124812258_124830666_1	chr4	-	1494	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	1470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830666	124812257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
ENSMUSG00000028879.5_132581375_132611820_1	chr4	-	2371	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	563	0	-563	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTTATTTTTATGAG	6093	False	NA	-11	True	AATAAA	-13	NA	132611820	132581374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
ENSMUSG00000028879.5_132581672_132611820_1	chr4	-	2074	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	860	0	-860	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTTGTCTACTGCC	6093	False	NA	NA	False	AATAAA	-17	NA	132611820	132581671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
ENSMUSG00000028884.15_132495687_132505794_1	chr4	+	1503	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	41	269	0	-269	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	26	True	GATAAA	-16	NA	132495686	132505794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUSG00000028885.9_132460277_132484457_1	chr4	-	1900	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	106	0	106	0	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCGTGAGGGATCACAGC	NA	False	NA	-1	True	AATAAA	-31	NA	132484457	132460276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
ENSMUSG00000028886.16_132366390_132449446_1	chr4	+	2497	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	33	2630	0	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAAGTTCTGTCCCAG	NA	False	NA	28	True	NA	NA	NA	132366389	132449446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ENSMUSG00000028890.14_124696375_124738597_1	chr4	+	2602	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	33	4996	0	-4575	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGGCTGCACTGTGTG	352	False	NA	-79	True	NA	NA	NA	124696374	124738597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
ENSMUSG00000028898.16_132039074_132056800_1	chr4	-	983	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
ENSMUSG00000028898.16_132039074_132056800_2	chr4	-	981	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_6	176.968693184266	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132055779_132055878_132056663
ENSMUSG00000028899.12_132001686_132020404_1	chr4	+	1114	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	0	2673	0	381	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACAGGGTGCATAGCTGA	NA	False	NA	23	True	AATAAA	-17	NA	132001685	132020404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028899.12_132001686_132020640_1	chr4	+	1350	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	0	2437	0	617	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTGTCCATAGGACCT	NA	False	NA	26	True	AATAAA	-22	NA	132001685	132020640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028907.8_124572590_124587393_1	chr4	-	966	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	637	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028914.14_141521155_141541656_1	chr4	+	2034	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	232	1631	0	658	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTAGCCTGTATTGT	NA	False	NA	6	True	AATAAA	-16	NA	141521154	141541656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUSG00000028920.10_140875233_140928107_1	chr4	+	2659	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	9	3266	0	-3266	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGCTGTTGTGGTCTTA	NA	False	NA	5	True	AATAAA	-24	NA	140875232	140928107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
ENSMUSG00000028932.9_21991773_22008785_1	chr5	+	1425	12	ISM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	1492	0	1492	0	3prime_fragment	FALSE	canonical	3	1482	junction_9	138.585355743117	3246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21991772	22008785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUSG00000028937.15_152262591_152356309_1	chr4	+	1353	8	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	161.236041952442	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152314243_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUSG00000028945.10_25008246_25047426_1	chr5	-	1163	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	196	425	0	419	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047426	25008245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUSG00000028945.10_25008246_25047607_1	chr5	-	1344	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	15	425	0	419	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047607	25008245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUSG00000028952.13_152110335_152112128_1	chr4	-	943	3	ISM	ENSMUSG00000028952.13	ENSMUST00000155389.8	2312	10	-10	6104	0	600	5prime_fragment	FALSE	canonical	3	24	junction_2	6.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGCCCACTGACAGCAGA	8669	False	NA	NA	False	NA	NA	NA	152112128	152110334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_152110477_152110844_152111517_152111999
ENSMUSG00000028954.12_24890985_24914211_1	chr5	+	1928	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	455	1163	0	-1163	multi-exon	FALSE	canonical	3	299	junction_1	111.175284472544	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAATGCTTCTTTGCG	NA	False	NA	20	True	TATAAA	-16	NA	24890984	24914211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914211_2	chr5	+	1941	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	163	1165	0	-1163	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAATGCTTCTTTGCG	NA	False	NA	20	True	TATAAA	-16	NA	24890984	24914211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914869_1	chr5	+	2599	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	163	507	0	-505	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGCAAGTTATTTTTAA	NA	False	NA	13	True	ATTAAA	-22	NA	24890984	24914869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914869_2	chr5	+	2586	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	455	505	0	-505	multi-exon	FALSE	canonical	3	299	junction_1	111.175284472544	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGCAAGTTATTTTTAA	NA	False	NA	13	True	ATTAAA	-22	NA	24890984	24914869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028960.21_149482957_149511088_1	chr4	-	1036	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	-415	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149511088	149482956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_149483243_149510338
ENSMUSG00000028961.16_149234448_149251122_1	chr4	-	2153	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.541379635126	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251122	149234447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_149234909_149234931_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028961.16_149234448_149251228_1	chr4	-	2259	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.541379635126	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251228	149234447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_149234909_149234931_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028964.15_150981590_150994285_1	chr4	-	810	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	98	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	5525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994285	150981589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUSG00000028964.15_150981590_150994333_1	chr4	-	833	7	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	153	junction_6	2090.71572673092	5389	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994333	150981589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994264
ENSMUSG00000028969.11_24624183_24628560_1	chr5	-	1150	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	52.4982486917657	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028969.11_24624183_24628560_2	chr5	-	1259	11	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	intron_retention	FALSE	canonical	0	0	junction_3	55.0178152965019	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028970.10_8848147_8856249_1	chr5	+	505	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-6	7402	0	-7402	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTGCAGTGTTGTGT	NA	False	NA	NA	False	AATGAA	-19	NA	8848146	8856249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
ENSMUSG00000028970.10_8899175_8916315_1	chr5	+	1753	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50989	0	-158	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5226	False	NA	10	True	ATTAAA	-17	NA	8899174	8916315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_8901101_8916315_1	chr5	+	1445	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-286	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7152	False	NA	10	True	ATTAAA	-17	NA	8901100	8916315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028973.19_24599394_24614945_1	chr5	+	2700	16	FSM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	241	-2	0	0	multi-exon	FALSE	canonical	3	156	junction_4	17.0567679626984	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGCTGTAGCTTAGTA	NA	False	NA	31	True	AATAAA	-21	NA	24599393	24614945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
ENSMUSG00000028990.14_149569697_149581125_1	chr4	+	1283	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	61.9861735735133	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569696	149581125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028990.14_149569751_149581125_1	chr4	+	1552	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	58.2405287035881	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028998.7_24044650_24049159_1	chr5	-	417	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	708	0	-708	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	2935	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCCTTTCATACTTT	NA	False	NA	-29	True	AATAAA	-18	NA	24049159	24044649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_24044827_24046707_24046757_24048968
ENSMUSG00000029001.16_148237257_148244320_1	chr4	-	1612	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	220	-3	12	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCCTGCGGCTTTTGG	NA	False	NA	-3	True	AATAAA	-16	NA	148244320	148237256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUSG00000029003.12_148224954_148230156_2	chr4	+	1220	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	315	0	-227	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224953	148230156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_148225181_148230156_1	chr4	+	993	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	542	0	0	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148225180	148230156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029004.16_23639447_23690468_1	chr5	+	1931	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	8	18765	0	19	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGATACTTCAAAAGA	NA	False	NA	NA	False	AAAAAG	-9	NA	23639446	23690468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
ENSMUSG00000029007.9_148164371_148172488_1	chr4	-	1143	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	2853	0	603	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	-18	True	NA	NA	NA	148172488	148164370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029007.9_148164371_148172488_2	chr4	-	1096	5	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	0	603	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_4	495.678575288463	629	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	-18	True	NA	NA	NA	148172488	148164370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172420
ENSMUSG00000029007.9_148164371_148172488_3	chr4	-	1380	5	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	0	603	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_4	478.358913369449	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	-18	True	NA	NA	NA	148172488	148164370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172136
ENSMUSG00000029007.9_148164730_148172488_1	chr4	-	784	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	3212	0	244	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGAGCTGTGGTTGGTTT	NA	False	NA	-6	True	NA	NA	NA	148172488	148164729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029022.19_147945243_147952940_1	chr4	-	1569	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	236	8	0	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCATGTAAGCCTCTC	NA	False	NA	-7	True	AATAAA	-21	NA	147952940	147945242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_147945243_147953001_1	chr4	-	1558	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCATGTAAGCCTCTC	NA	False	NA	-7	True	AATAAA	-21	NA	147953001	147945242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029030.15_154241942_154244834_1	chr4	-	1435	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	289	0	-211	0	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154244834	154241941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
ENSMUSG00000029034.10_155954024_155973326_1	chr4	+	1860	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	0	136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	247.894457828775	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9981	False	NA	32	True	AATAAA	-20	NA	155954023	155973326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971941_155972363_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000029034.10_155954024_155973326_2	chr4	+	2113	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	21	234	0	136	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9981	False	NA	32	True	AATAAA	-20	NA	155954023	155973326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000029038.10_155789581_155818336_1	chr4	+	1148	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	324	0	0	0	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGAATTGCCACAAAAT	NA	False	NA	117	True	AATAAA	-33	NA	155789580	155818336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
ENSMUSG00000029038.10_155789793_155816646_1	chr4	+	673	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	201	0	201	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789792	155816646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ENSMUSG00000029048.4_155158840_155170828_1	chr4	-	1530	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	273	0	-273	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029048.4_155158840_155170828_2	chr4	-	1321	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	2	273	0	-273	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_155159222_155170828_1	chr4	-	1148	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	655	0	-655	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTGATTTCTTTTTCA	NA	False	NA	0	True	AAGAAA	-18	NA	155170828	155159221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029048.4_155159222_155170828_2	chr4	-	939	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	2	655	0	-655	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTGATTTCTTTTTCA	NA	False	NA	0	True	AAGAAA	-18	NA	155170828	155159221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029053.17_155346557_155445850_1	chr4	-	2294	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-32	379	-32	0	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGAATAAAGTGTACCG	NA	False	NA	-36	True	NA	NA	NA	155445850	155346556	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
ENSMUSG00000029053.17_155439077_155445850_1	chr4	-	539	4	ISM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-32	92899	-32	1514	5prime_fragment	FALSE	canonical	3	200	junction_1	19.2584757675391	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445850	155439076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_155439162_155440883_155440974_155441937_155442060_155445608
ENSMUSG00000029062.15_155733907_155734395_1	chr4	+	409	2	ISM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	24540	0	2082	0	3prime_fragment	FALSE	canonical	3	573	junction_1	0	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	5559	False	NA	23	True	ATTAAA	-28	NA	155733906	155734395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_155734069_155734148
ENSMUSG00000029063.17_155648299_155674319_1	chr4	+	1871	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	142	1139	0	242	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTTTAACTGCAGTGC	9714	False	NA	16	True	AATAAA	-16	NA	155648298	155674319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029063.17_155648299_155675454_1	chr4	+	3006	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	142	4	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9714	False	NA	34	True	AATAAA	-20	NA	155648298	155675454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029066.13_155888107_155893288_1	chr4	+	635	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	129	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155888106	155893288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUSG00000029068.17_155896958_155908814_1	chr4	+	2244	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	12	186	0	54	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4637	False	NA	22	True	AATAAA	-27	NA	155896957	155908814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ENSMUSG00000029068.17_155896976_155903299_1	chr4	+	966	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	18	5701	0	2984	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTGTTTTAAAAAAAAT	4655	False	NA	16	True	AATAAA	-16	NA	155896975	155903299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
ENSMUSG00000029073.10_155949753_155953897_1	chr4	-	2089	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	0	573	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATACCTACATGATTG	NA	False	NA	-43	True	NA	NA	NA	155953897	155949752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155951343_155951569_155951795_155953623
ENSMUSG00000029076.15_156077329_156094667_1	chr4	+	1816	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	-39	3400	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077328	156094667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029076.15_156077627_156094667_1	chr4	+	1518	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	259	3400	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077626	156094667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029084.6_44026202_44069520_1	chr5	+	2766	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	307	197	0	-197	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAAAGTATTTGCTTGGT	NA	False	NA	10	True	AATAAA	-15	NA	44026201	44069520	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
ENSMUSG00000029089.9_48529671_48545695_2	chr5	+	1124	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	492	0	-203	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGAGTGCTGTAGGGGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	48529670	48545695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029090.13_50117298_50119047_1	chr5	-	1617	2	ISM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	97301	0	10370	0	3prime_fragment	FALSE	canonical	3	448	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50119047	50117297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_50118857_50118989
ENSMUSG00000029097.12_35714657_35732414_1	chr5	-	2680	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	1110	0	-1110	multi-exon	FALSE	canonical	3	72	junction_3	7.3	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAATGTCCTGGGATCAG	7626	False	NA	1	True	AAAAAG	-20	NA	35732414	35714656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029097.12_35715148_35732414_1	chr5	-	2189	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	1601	0	-1601	multi-exon	FALSE	canonical	3	72	junction_3	7.3	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGTTTCCCTTGTCC	7626	False	NA	-2	True	NA	NA	NA	35732414	35715147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029103.17_35250413_35263043_1	chr5	-	1346	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	67	1568	-3	0	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACAACAGTTTATATTG	NA	False	NA	-55	True	NA	NA	NA	35263043	35250412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ENSMUSG00000029110.14_34493768_34510780_3	chr5	+	2853	7	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	981.947667761486	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493767	34510780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029111.8_34055260_34093594_1	chr5	-	2417	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	163	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093594	34055259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029111.8_34055519_34093656_1	chr5	-	2220	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	101	259	-62	-259	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	-6	True	ATTAAA	-21	NA	34093656	34055518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029125.15_38196626_38294163_1	chr5	+	1516	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	540	946	0	2	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGCAGTCAGTGAGTC	NA	False	NA	15	True	AATAAA	-15	NA	38196625	38294163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ENSMUSG00000029128.13_41782319_41865507_1	chr5	-	1556	6	NIC	ENSMUSG00000029128.13	novel	1635	7	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_4	194.631549343882	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865507	41782318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
ENSMUSG00000029131.15_29940987_29972101_1	chr5	+	1465	7	NIC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	707.616755187596	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4595	False	NA	42	True	AATAAA	-42	NA	29940986	29972101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_29941115_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUSG00000029131.15_29940987_29986705_1	chr5	+	1426	9	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	301	4771	0	0	5prime_fragment	FALSE	canonical	3	694	junction_8	427.836252992894	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGTATGGAGTATATT	4595	False	NA	NA	False	ATTAAA	-19	NA	29940986	29986705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127
ENSMUSG00000029131.15_29940987_29991373_1	chr5	+	2514	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	301	103	0	-103	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGCTCTCTTGTGGTCA	4595	False	NA	4	True	AATAAA	-17	NA	29940986	29991373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ENSMUSG00000029145.13_31344912_31350380_1	chr5	-	1766	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	103	9	-22	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350380	31344911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
ENSMUSG00000029145.13_31344912_31350380_2	chr5	-	1621	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	394	10	-22	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350380	31344911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
ENSMUSG00000029152.14_73450150_73470943_1	chr5	+	1039	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	15	469	0	-314	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGTTTGTGTAATTTAA	NA	False	NA	NA	False	CATAAA	-17	NA	73450149	73470943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450150_73470943_2	chr5	+	1084	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	-314	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGTTTGTGTAATTTAA	NA	False	NA	NA	False	CATAAA	-17	NA	73450149	73470943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450150_73471284_1	chr5	+	1425	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450149	73471284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450150_73471284_3	chr5	+	1380	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	15	128	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450149	73471284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450150_73471412_1	chr5	+	1553	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450149	73471412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029153.12_73481009_73495936_1	chr5	-	688	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	399	1467	-35	-320	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAATTCTCTCACCCCT	NA	False	NA	0	True	AATATA	-19	NA	73495936	73481008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029156.12_73792576_73805133_1	chr5	-	1302	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	0	2484	0	-2484	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTTAACATTCTACTA	NA	False	NA	NA	False	AATAAA	-19	NA	73805133	73792575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
ENSMUSG00000029162.16_31078934_31088590_1	chr5	+	1287	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	-200	0	1	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1142	False	NA	7	True	AATAAA	-16	NA	31078933	31088590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029162.16_31079202_31088590_1	chr5	+	1019	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	268	-200	0	1	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1410	False	NA	7	True	AATAAA	-16	NA	31079201	31088590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029169.12_52307545_52347719_1	chr5	-	2873	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	137	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCTGTATCTTTTATT	NA	False	NA	2	True	AATAAA	-27	NA	52347719	52307544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ENSMUSG00000029171.13_64250293_64285286_1	chr5	+	1961	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	408	0	-221	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATTTTAGGGCCAAGTG	NA	False	NA	NA	False	AATAAA	-23	NA	64250292	64285286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUSG00000029171.13_64250293_64285507_1	chr5	+	2182	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	187	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGTAAACAATATGCCTT	NA	False	NA	16	True	AATAAA	-22	NA	64250292	64285507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUSG00000029173.13_52801064_52827050_1	chr5	-	1617	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	0	3635	0	-2546	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGGTCTGAGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	52827050	52801063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
ENSMUSG00000029175.18_30805297_30815960_1	chr5	+	1955	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	20	1113	0	372	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCCTTGATGTTTTGAC	6698	False	NA	9	True	NA	NA	NA	30805296	30815960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
ENSMUSG00000029176.14_52991354_53024076_1	chr5	+	2791	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	0	1063	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	13	True	AATAAA	-13	NA	52991353	53024076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029176.14_52991468_53024076_1	chr5	+	2677	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	114	1063	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	13	True	AATAAA	-13	NA	52991467	53024076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029177.10_30824279_30831730_1	chr5	+	864	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	158	444	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9224	False	NA	17	True	AATAAA	-1	NA	30824278	30831730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_30824279_30832174_1	chr5	+	1308	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	158	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	9224	False	NA	NA	False	AATGAA	-5	NA	30824278	30832174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_30824279_30832174_2	chr5	+	1445	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	38	-452	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	9224	False	NA	NA	False	AATGAA	-5	NA	30824278	30832174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029178.15_64955290_64980452_1	chr5	+	895	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5441	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	50	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64955289	64980452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
ENSMUSG00000029195.11_65529247_65541350_1	chr5	+	2669	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23590	0	23496	0	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529246	65541350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
ENSMUSG00000029198.4_36622529_36629041_1	chr5	+	958	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	187	2383	187	-2383	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	2737	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTGCACAGTCTACC	NA	False	NA	15	True	AATAAA	-16	NA	36622528	36629041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
ENSMUSG00000029199.12_65548887_65566306_1	chr5	+	1377	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	47	244	0	-244	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAGAAAAAGAGAAAAG	6933	False	NA	NA	False	NA	NA	NA	65548886	65566306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029199.12_65548887_65566550_1	chr5	+	1506	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	4	1486	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6933	False	NA	48	True	AAAAAG	-11	NA	65548886	65566550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029201.15_65570564_65593069_1	chr5	-	2327	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	223	0	223	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593069	65570563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
ENSMUSG00000029203.17_65694634_65752488_1	chr5	+	992	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	58	3843	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694633	65752488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694634_65752488_2	chr5	+	904	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	15	610	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694633	65752488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694634_65752488_3	chr5	+	839	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	0	610	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694633	65752488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694634_65752488_4	chr5	+	898	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	0	3784	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694633	65752488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65752488_1	chr5	+	921	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	129	3843	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694704	65752488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65753098_1	chr5	+	1531	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	129	3233	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694704	65753098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029209.16_69732344_69749636_1	chr5	-	1841	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	-19	-811	0	0	multi-exon	TRUE	canonical	3	26	junction_3	36.2142544065486	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATCTCATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-45	NA	69749636	69732343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUSG00000029213.12_72316354_72325499_1	chr5	-	1542	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325499	72316353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
ENSMUSG00000029213.12_72316354_72325499_2	chr5	-	1426	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	33	2436	0	0	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325499	72316353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029213.12_72316592_72325499_1	chr5	-	1188	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	33	2674	0	-238	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAATAACATTGTTATTT	NA	False	NA	NA	False	ACTAAA	-19	NA	72325499	72316591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029223.13_66833585_66844577_1	chr5	+	1014	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	178.588113506231	947	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_66833585_66844577_2	chr5	+	990	9	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.970933125348	949	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ENSMUSG00000029223.13_66833585_66844577_3	chr5	+	1522	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_66833585_66844577_4	chr5	+	1498	9	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	intron_retention	FALSE	non_canonical	3	377	junction_8	51.2150795664714	739	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ENSMUSG00000029227.16_74696164_74756814_1	chr5	+	2051	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	0	8	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	206.218767164378	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756814_2	chr5	+	2063	17	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	220	junction_12	176.742209428733	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756814_3	chr5	+	1982	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	54	2637	0	8	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756871_1	chr5	+	2147	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	32	2590	0	65	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATGTGAATTAAGTCATC	NA	False	NA	87	True	AATAAA	-29	NA	74696163	74756871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029233.16_76288153_76303093_1	chr5	+	1479	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	35	233	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATATGAATGTACAGTA	NA	False	NA	NA	False	AATAAA	-34	NA	76288152	76303093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUSG00000029246.15_77061096_77099066_1	chr5	-	3649	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	359	-27	-54	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACAGCACCACGTTCCA	NA	False	NA	76	True	AATAAA	-30	NA	77099066	77061095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029246.15_77061299_77099066_1	chr5	-	3446	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	359	176	-54	-176	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTTCAAGCCTTGTTTT	NA	False	NA	85	True	ATTAAA	-21	NA	77099066	77061298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029246.15_77062891_77099066_1	chr5	-	1854	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	359	1768	-54	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTACATGGAATGCAGCAT	NA	False	NA	-15	True	ATTAAA	-20	NA	77099066	77062890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029247.18_77099154_77115356_1	chr5	+	2119	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-61	-196	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	2149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	286	False	NA	19	True	ATTAAA	-22	NA	77099153	77115356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029247.18_77099624_77115356_1	chr5	+	2016	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	470	-4	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	2127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	756	False	NA	19	True	ATTAAA	-22	NA	77099623	77115356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029250.6_77458338_77497171_1	chr5	+	3801	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	344	0	0	0	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	16	True	AATAAA	-16	NA	77458337	77497171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
ENSMUSG00000029267.18_108208610_108251913_1	chr5	+	1308	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	8	intron_retention	FALSE	canonical	0	0	junction_2	677.856575678132	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208609	108251913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108208610_108251913_2	chr5	+	1456	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	8	intron_retention	FALSE	canonical	0	0	junction_3	755.403695420902	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208609	108251913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_108208730_108221172_108221321_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108208610_108255109_1	chr5	+	2200	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	80	intron_retention	FALSE	canonical	0	0	junction_2	629.055661694738	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGTTAGATACTTT	NA	False	NA	2	True	ATTAAA	-16	NA	108208609	108255109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029267.18_108208610_108255371_2	chr5	+	2462	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	35	intron_retention	FALSE	canonical	0	0	junction_2	629.055661694738	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGACTAGACTTCATTG	NA	False	NA	9	True	AATATA	-18	NA	108208609	108255371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029267.18_108208610_108256136_1	chr5	+	3227	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	0	intron_retention	FALSE	canonical	0	0	junction_2	629.055661694738	267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108208609	108256136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029267.18_108213583_108251913_1	chr5	+	1436	12	ISM	ENSMUSG00000029267.18	ENSMUST00000124195.8	2549	15	6	3411	0	8	5prime_fragment	FALSE	canonical	0	0	junction_2	757.303262507801	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108213582	108251913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_108213832_108228690_108228894_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108235808_108256872_1	chr5	+	3359	10	ISM	ENSMUSG00000029267.18	ENSMUST00000198662.5	2675	16	9777	-1536	946	2	3prime_fragment	FALSE	canonical	3	1473	junction_1	115.345321577759	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	35	True	ATTAAA	-36	NA	108235807	108256872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029270.11_108056830_108134899_1	chr5	-	1758	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	52	911	0	739	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGATTTACTGTGTACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	108134899	108056829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
ENSMUSG00000029270.11_108057055_108134899_1	chr5	-	1533	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	52	1136	0	514	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGCTGTGAAAATCCTC	NA	False	NA	NA	False	TTTAAA	-10	NA	108134899	108057054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
ENSMUSG00000029276.14_107696888_107745469_1	chr5	-	1948	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTATACTTTATAC	NA	False	NA	NA	False	AATAAA	-17	NA	107745469	107696887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000029328.16_100181436_100186769_1	chr5	-	2440	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	0	-15	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100186769	100181435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186610_1	chr5	-	1137	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	471	1144	118	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186610	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_1	chr5	-	2051	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_2	chr5	-	1401	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	754	-6	-15	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_3	chr5	-	2700	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_4	chr5	-	1296	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	1144	-15	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_5	chr5	-	1442	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
ENSMUSG00000029344.16_112424570_112463222_1	chr5	+	905	6	NIC	ENSMUSG00000029344.16	novel	1835	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112424569	112463222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_112436628_112463222_2	chr5	+	1800	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112436627	112463222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029363.15_117517210_117527112_1	chr5	-	1754	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	0	1042	0	472	multi-exon	TRUE	canonical	3	1613	junction_7	125.046431376509	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029363.15_117517210_117527112_2	chr5	-	1748	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	472	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	550.336524319439	1002	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_117517966_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029366.11_88913036_88929356_1	chr5	+	1113	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	181	1784	181	-1784	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGGGAGTCTGGAGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	88913035	88929356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUSG00000029366.11_88913036_88931140_1	chr5	+	2897	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	181	0	181	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88913035	88931140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUSG00000029387.11_124717229_124734904_1	chr5	+	1807	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	26	839	0	254	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	19	True	AATAAA	-20	NA	124717228	124734904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
ENSMUSG00000029388.15_124708716_124717138_1	chr5	-	1814	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	0	-440	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	291.131172111473	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717138	124708715	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
ENSMUSG00000029388.15_124708716_124717138_2	chr5	-	1517	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	56	440	0	-440	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717138	124708715	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ENSMUSG00000029389.18_124690927_124707036_1	chr5	+	2112	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	0	687	0	-687	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTAATTCCTAT	NA	False	NA	2	True	NA	NA	NA	124690926	124707036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
ENSMUSG00000029397.16_92096860_92110609_1	chr5	-	1552	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	318	97	-15	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGTTTTACAGACTT	1653	False	NA	NA	False	AATAAA	-21	NA	92110609	92096859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029397.16_92097144_92110609_1	chr5	-	1268	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	318	381	-15	-284	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTCTTTTCTCTCT	1653	False	NA	0	True	ATTAAA	-24	NA	92110609	92097143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029397.16_92097144_92110710_1	chr5	-	1369	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	217	381	-116	-284	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTCTTTTCTCTCT	1552	False	NA	0	True	ATTAAA	-24	NA	92110710	92097143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029404.16_124254185_124256259_1	chr5	+	1108	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	332	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254184	124256259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029404.16_124254185_124256259_2	chr5	+	980	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254184	124256259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029405.17_92201576_92231576_1	chr5	-	2726	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-59	-783	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231576	92201575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_92201576_92231576_2	chr5	-	2627	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	2	1553	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231576	92201575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_92202359_92231372_1	chr5	-	1933	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	783	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231372	92202358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029405.17_92202359_92231372_2	chr5	-	1834	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	44	2354	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231372	92202358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029405.17_92202359_92231576_1	chr5	-	1844	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	2	2336	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231576	92202358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029413.15_92406107_92426024_1	chr5	-	1820	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	5	589	0	185	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAGCTGTGAAGAGAAAA	9203	False	NA	NA	False	AATAAA	-17	NA	92426024	92406106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
ENSMUSG00000029414.12_123887789_123892466_1	chr5	+	680	2	FSM	ENSMUSG00000029414.12	ENSMUST00000199838.2	347	2	10	-343	0	343	multi-exon	FALSE	canonical	3	399	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGCTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	123887788	123892466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_123887888_123891885
ENSMUSG00000029422.16_123866493_123887444_2	chr5	-	2139	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	33	-577	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4354	False	NA	NA	False	AATAAA	-11	NA	123887444	123866492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_123866493_123887444_3	chr5	-	2232	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-10	-537	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4354	False	NA	NA	False	AATAAA	-11	NA	123887444	123866492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_123866787_123887444_2	chr5	-	2016	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_123866787_123887444_3	chr5	-	1938	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-10	-243	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_123866787_123887444_4	chr5	-	1845	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	33	-283	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029426.9_92591850_92653496_1	chr5	-	2021	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	0	2677	0	-2677	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGGTTGGGCCCTGG	NA	False	NA	-6	True	AATAAA	-14	NA	92653496	92591849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
ENSMUSG00000029427.12_123837862_123859011_1	chr5	-	2693	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	96	1497	-86	0	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAGGTTTAATAAATTAG	6493	False	NA	-38	True	AATAAA	-20	NA	123859011	123837861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
ENSMUSG00000029430.14_129097336_129100230_1	chr5	+	1017	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	203	1157	0	-1157	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	8363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129101387_1	chr5	+	2174	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	203	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	8529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	545	False	NA	21	True	AATATA	-23	NA	129097335	129101387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029433.17_123649967_123662208_1	chr5	-	1346	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	31	199	-2	-199	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGTCTTCAGGCTGTC	8953	False	NA	-9	True	ATTAAA	-20	NA	123662208	123649966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029433.17_123650145_123662208_1	chr5	-	1168	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	31	377	-2	221	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGTGAGCACAGCTC	8953	False	NA	54	True	GGGGCT	-39	NA	123662208	123650144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029434.13_123668807_123711069_1	chr5	-	2118	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	32	2085	-27	-2085	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGTCTCAAGTCTTC	9999	False	NA	-5	True	NA	NA	NA	123711069	123668806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ENSMUSG00000029440.16_123366321_123386590_2	chr5	+	925	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	68	1604	0	0	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366320	123386590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_123366321_123387025_2	chr5	+	1360	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	68	1169	0	435	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	23	True	NA	NA	NA	123366320	123387025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029446.15_129842622_129856245_1	chr5	-	1088	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8268	0	-8	0	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	1456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	NA	False	NA	-2	True	ATTAAA	-22	NA	129856245	129842621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ENSMUSG00000029446.15_129842622_129856312_1	chr5	-	1155	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8201	0	-35	0	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	NA	False	NA	-2	True	ATTAAA	-22	NA	129856312	129842621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ENSMUSG00000029446.15_129842622_129864218_1	chr5	-	1438	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	295	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	1523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	9052	False	NA	-2	True	ATTAAA	-22	NA	129864218	129842621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
ENSMUSG00000029447.14_129864457_129874921_1	chr5	+	1902	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	395	291	395	-291	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGTTCCGTAAGTGTTC	NA	False	NA	26	True	NA	NA	NA	129864456	129874921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029447.14_129864457_129875212_1	chr5	+	2193	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	395	0	395	0	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	2936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864456	129875212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029455.15_121705769_121731645_1	chr5	-	1946	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	242	1679	0	172	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	1027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	-26	True	AATAAA	-16	NA	121731645	121705768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ENSMUSG00000029462.19_122492469_122501060_1	chr5	+	692	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	37	1987	0	-214	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTGTATCACTTTTAT	716	False	NA	14	True	ATTAAA	-14	NA	122492468	122501060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029462.19_122492469_122501350_1	chr5	+	982	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	37	1697	0	1	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	1229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTCTTGAAAACCTGTG	716	False	NA	18	True	AATAAA	-18	NA	122492468	122501350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029464.11_122510590_122520965_1	chr5	+	1600	7	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	76	0	0	0	intron_retention	FALSE	canonical	3	424	junction_4	38.3608596821755	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8115	False	NA	NA	False	AATAAA	-42	NA	122510589	122520965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110
ENSMUSG00000029466.12_122560544_122582515_1	chr5	+	2254	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	37	460	0	-460	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	28	True	AATAAA	-24	NA	122560543	122582515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
ENSMUSG00000029472.14_122925522_122926390_1	chr5	-	586	2	ISM	ENSMUSG00000029472.14	ENSMUST00000199130.2	687	4	5202	-456	5202	0	3prime_fragment	FALSE	canonical	3	1940	junction_1	0	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122926390	122925521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_122926082_122926364
ENSMUSG00000029472.14_122925790_122926390_1	chr5	-	318	2	ISM	ENSMUSG00000029472.14	ENSMUST00000199130.2	687	4	5202	-188	5202	0	3prime_fragment	FALSE	canonical	3	1940	junction_1	0	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122926390	122925789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_122926082_122926364
ENSMUSG00000029472.14_122925790_122959343_1	chr5	-	2433	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	59	268	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029474.8_122988220_123007008_1	chr5	+	1985	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	109	2346	0	-2346	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	623	False	NA	9	True	AATAAA	-16	NA	122988219	123007008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029474.8_122988220_123007008_2	chr5	+	1766	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	0	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	623	False	NA	9	True	AATAAA	-16	NA	122988219	123007008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029486.14_96358003_96412275_1	chr5	+	1109	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	29	2293	0	-2293	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	22	True	TATAAA	-16	NA	96358002	96412275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029499.12_110422161_110434017_1	chr5	-	1015	5	NNC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	204.212511859582	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110434017	110422160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_110422495_110425520_110425641_110429062_110429248_110431511_110431620_110433749
ENSMUSG00000029521.8_110987845_111022011_1	chr5	+	2427	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	57	junction_1	67.6591457232502	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9178	False	NA	31	True	AAAACA	-7	NA	110987844	111022011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029522.13_115603166_115612781_1	chr5	+	794	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1155	0	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	500	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603165	115612781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
ENSMUSG00000029522.13_115603166_115612781_2	chr5	+	634	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1155	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603165	115612781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
ENSMUSG00000029544.17_115306748_115311389_1	chr5	-	824	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8092	-25	7929	0	3prime_fragment	FALSE	canonical	3	234	junction_2	2	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	2377	False	NA	-1	True	AATAAA	-20	NA	115311389	115306747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_115307208_115310817_115310966_115311173
ENSMUSG00000029544.17_115306748_115327042_1	chr5	-	1083	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2675	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7481	False	NA	-1	True	AATAAA	-20	NA	115327042	115306747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
ENSMUSG00000029544.17_115306748_115333049_1	chr5	-	1029	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-609	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	78.9926578866669	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	8154	False	NA	-1	True	AATAAA	-20	NA	115333049	115306747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115332913
ENSMUSG00000029552.20_17065148_17104893_1	chr6	+	1511	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	929	0	-929	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTTGTCTAATATTT	-34	True	NA	NA	False	AATAAA	-4	NA	17065147	17104893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUSG00000029559.16_115080263_115084133_1	chr5	+	252	3	FSM	ENSMUSG00000029559.16	ENSMUST00000140090.2	368	3	-27	143	0	-143	multi-exon	FALSE	canonical	3	274	junction_1	5	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGCCCACGTGGCCAAGA	NA	False	NA	NA	False	NA	NA	NA	115080262	115084133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115080415_115083844_115083888_115084076
ENSMUSG00000029559.16_115080263_115086608_1	chr5	+	1327	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	46	1234	0	765	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCCTGGTCAGTGCT	NA	False	NA	26	True	AATAAA	-28	NA	115080262	115086608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
ENSMUSG00000029571.15_13069815_13085060_1	chr6	+	1817	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-23	4208	0	3409	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGCTTTGATAAAGGTCA	2	True	NA	NA	False	AATAAA	-15	NA	13069814	13085060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ENSMUSG00000029575.18_114571078_114582082_1	chr5	-	998	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	39	1983	0	183	multi-exon	FALSE	canonical	3	162	junction_1	19.5604032422647	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCACTTGGGCTTTCTG	NA	False	NA	-5	True	AATGAA	-18	NA	114582082	114571077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUSG00000029580.15_142889482_142892480_1	chr5	-	1279	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	612	0	-226	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	6055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGACAACATTGGCATG	8918	False	NA	17	True	NA	NA	NA	142892480	142889481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ENSMUSG00000029599.14_120751192_120765278_1	chr5	+	2555	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	388	1379	0	-414	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGCCCAGGAGCTGCGCC	NA	False	NA	NA	False	NA	NA	NA	120751191	120765278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029599.14_120751192_120765692_1	chr5	+	2969	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	388	965	0	0	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	NA	False	NA	27	True	AATAAA	-18	NA	120751191	120765692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029599.14_120763990_120765692_1	chr5	+	904	4	ISM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	13186	965	4598	0	3prime_fragment	FALSE	canonical	3	562	junction_2	12.2292908852294	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	9874	False	NA	27	True	AATAAA	-18	NA	120763989	120765692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029603.16_120818268_120821521_1	chr5	-	1905	6	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	11947	0	-541	0	3prime_fragment	FALSE	canonical	3	95	junction_3	14.7051011557214	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821521	120818267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359
ENSMUSG00000029613.16_143803586_143839535_1	chr5	+	2748	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	43	1534	0	-1534	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTGGACAAGTCCCTT	NA	False	NA	20	True	AATAAA	-25	NA	143803585	143839535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
ENSMUSG00000029614.14_121342609_121347029_1	chr5	+	930	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	65	275	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	10447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	1	True	ATTAAA	-15	NA	121342608	121347029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029616.10_121582819_121590429_1	chr5	-	1132	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	140	3932	-18	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3352	False	NA	-41	True	AATAAA	-14	NA	121590429	121582818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121583636_121585203_121585343_121590253
ENSMUSG00000029616.10_121582819_121590550_1	chr5	-	1253	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	19	3932	0	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3231	False	NA	-41	True	AATAAA	-14	NA	121590550	121582818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121583636_121585203_121585343_121590253
ENSMUSG00000029617.11_143924888_143951695_1	chr5	-	1632	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-24	161	0	-161	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTACTTGGTCTGATG	NA	False	NA	-31	True	AGTAAA	-23	NA	143951695	143924887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUSG00000029622.17_145051068_145064884_1	chr5	+	1437	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	43	1625	0	1	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	1920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACAAACAACCC	8075	False	NA	-83	True	NA	NA	NA	145051067	145064884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029622.17_145051126_145064996_1	chr5	+	1491	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	101	1513	0	98	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	1978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8133	False	NA	29	True	AATAAA	-15	NA	145051125	145064996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029623.15_145066464_145076832_1	chr5	-	1252	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	216	885	-24	430	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTTTGGCAGTTTCT	NA	False	NA	-22	True	ATTAAA	-15	NA	145076832	145066463	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029623.15_145066894_145076832_1	chr5	-	822	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	216	1315	-24	0	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATTTGAATGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	145076832	145066893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029624.11_145084324_145088237_1	chr5	-	1134	2	ISM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	15681	0	15529	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145088237	145084323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_145085316_145088095
ENSMUSG00000029632.8_11900371_11907484_1	chr6	-	532	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	-2	80	-2	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	2308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	-33	False	NA	-11	True	AATAAA	-15	NA	11907484	11900370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ENSMUSG00000029634.16_146146002_146158247_1	chr5	-	3334	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	118	0	-19	0	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTGCAAACTTATTTC	2299	False	NA	NA	False	ATTAAA	-28	NA	146158247	146146001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
ENSMUSG00000029642.12_147014374_147015896_1	chr5	+	682	2	FSM	ENSMUSG00000029642.12	ENSMUST00000050970.4	1196	2	514	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	0	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGAGTGGTTTCTCTTC	NA	False	NA	22	True	NA	NA	NA	147014373	147015896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_147014504_147015344
ENSMUSG00000029642.12_147014374_147048171_1	chr5	+	915	3	FSM	ENSMUSG00000029642.12	ENSMUST00000200993.2	1167	3	16	236	0	0	multi-exon	FALSE	canonical	0	0	junction_2	200	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTCCTCTTTTGGGTGT	NA	False	NA	16	True	AATAAA	-17	NA	147014373	147048171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_147014504_147038038_147038110_147047457
ENSMUSG00000029649.11_147797447_147812589_1	chr5	+	726	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	176	677	0	168	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	1872	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCATGTGTGTGGTTGGG	NA	False	NA	31	True	AATAAA	-21	NA	147797446	147812589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
ENSMUSG00000029651.17_148239984_148250918_1	chr5	+	1224	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	9	-648	0	37	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAAGCATGCCTATCTG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029655.18_150566465_150589053_1	chr5	-	1930	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	24	7028	-11	0	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTGTTTAGATCCTAA	5461	False	NA	11	True	AATAAA	-32	NA	150589053	150566464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
ENSMUSG00000029657.16_149540310_149559706_1	chr5	-	3404	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	97	301	-32	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559706	149540309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUSG00000029657.16_149540310_149559803_1	chr5	-	3341	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559803	149540309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
ENSMUSG00000029670.13_21949684_21974538_1	chr6	+	2187	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	114	1499	0	9	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTTATACTTTACAC	25	False	NA	17	True	AATAAA	-17	NA	21949683	21974538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUSG00000029672.17_22307881_22356109_1	chr6	-	1408	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	56	1362	-12	0	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGATTTGTGAAAAGCA	12	True	NA	-21	True	AATAAA	-21	NA	22356109	22307880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
ENSMUSG00000029686.16_47430838_47502993_1	chr6	+	3043	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	0	1	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTACAAGTTGCATTT	NA	False	NA	9	True	AATAAA	-14	NA	47430837	47502993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029686.16_47430838_47503073_1	chr6	+	3123	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	0	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430837	47503073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029687.17_47507253_47571964_1	chr6	-	2481	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47571964	47507252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ENSMUSG00000029701.16_29125017_29164671_1	chr6	-	2689	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	334	1442	334	124	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTTTAACATTTTT	9	True	NA	-19	True	AATATA	-29	NA	29164671	29125016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
ENSMUSG00000029701.16_29125141_29164671_1	chr6	-	2565	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	334	1566	334	0	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGAGAGTACTGAATT	9	True	NA	-79	True	NA	NA	NA	29164671	29125140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
ENSMUSG00000029703.11_136151921_136164858_1	chr5	-	2108	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	70	295	-2	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGTGGGAAATGAGTG	6754	False	NA	-11	True	ATTAAA	-19	NA	136164858	136151920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ENSMUSG00000029718.15_137603367_137606932_1	chr5	-	1059	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2706	-3	-478	0	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6840	False	NA	-4	True	AATAAA	-19	NA	137606932	137603366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
ENSMUSG00000029718.15_137603367_137608964_1	chr5	-	1570	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	785	2	0	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4808	False	NA	-4	True	AATAAA	-19	NA	137608964	137603366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
ENSMUSG00000029723.17_137744258_137758011_1	chr5	+	2324	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	0	1659	0	201	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	NA	False	NA	13	True	ATTAAA	-24	NA	137744257	137758011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
ENSMUSG00000029723.17_137744435_137758011_1	chr5	+	2147	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	177	1659	177	201	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	NA	False	NA	13	True	ATTAAA	-24	NA	137744434	137758011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
ENSMUSG00000029725.11_137777166_137778372_1	chr5	+	1047	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	intron_retention	FALSE	canonical	3	301	junction_1	64	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_137777484_137777563_137777808_137777887
ENSMUSG00000029730.17_138162862_138169503_1	chr5	-	2302	15	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	565.543210063546	1553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2897	False	NA	-25	True	AATAAA	-15	NA	138169503	138162861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169449
ENSMUSG00000029730.17_138162862_138170114_1	chr5	-	2375	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	570	17	-34	0	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029752.13_7674735_7693254_1	chr6	-	2435	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	-434	0	434	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	5643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTTTCCATAAAACTTC	1567	False	NA	-25	True	NA	NA	NA	7693254	7674734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUSG00000029752.13_7674811_7693137_1	chr6	-	2242	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	117	-358	-27	358	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	5620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTTTTGTAGGTCT	1684	False	NA	-14	True	AATACA	-15	NA	7693137	7674810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUSG00000029761.17_34686425_34722899_1	chr6	+	701	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-144	27730	0	3756	5prime_fragment	FALSE	canonical	3	208	junction_2	9	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGGAGGAGCAAGAGAA	1305	False	NA	NA	False	NA	NA	NA	34686424	34722899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_34686633_34718723_34718871_34722553
ENSMUSG00000029767.17_29348118_29376671_1	chr6	+	3213	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	0	-543	0	0	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	-1	True	NA	115	True	AATAAA	-19	NA	29348117	29376671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUSG00000029777.11_55015168_55056485_1	chr6	+	2204	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	176	0	176	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55015167	55056485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ENSMUSG00000029781.8_56809044_56855502_1	chr6	+	2168	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	841	0	-841	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGTAGCTGTCATGGA	NA	False	NA	5	True	AATAAA	-17	NA	56809043	56855502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
ENSMUSG00000029782.21_30482414_30509715_1	chr6	-	2231	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	67	1187	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	4	True	NA	-18	True	ATTAAA	-16	NA	30509715	30482413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ENSMUSG00000029790.17_30655659_30693748_1	chr6	-	1244	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	2203	0	-128	multi-exon	FALSE	canonical	3	75	junction_8	9.18095855561934	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCTCAGCGCTCCCAAC	NA	False	NA	-5	True	AATAAA	-17	NA	30693748	30655658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUSG00000029814.11_49064062_49191638_1	chr6	-	2187	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	253	1905	0	1000	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTGGGGGTA	NA	False	NA	NA	False	AATATA	-31	NA	49191638	49064061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ENSMUSG00000029814.11_49064062_49191757_2	chr6	-	2306	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	134	1905	-119	1000	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTGGGGGTA	NA	False	NA	NA	False	AATATA	-31	NA	49191757	49064061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ENSMUSG00000029815.13_49050782_49061639_1	chr6	+	720	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	53	2046	0	27	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCTTTGATATGACT	348	False	NA	6	True	AATAAA	-15	NA	49050781	49061639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
ENSMUSG00000029815.13_49050782_49061639_2	chr6	+	541	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	0	2046	0	27	multi-exon	FALSE	canonical	3	89	junction_1	380.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCTTTGATATGACT	348	False	NA	6	True	AATAAA	-15	NA	49050781	49061639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49051038_49059778_49059861_49061436
ENSMUSG00000029817.12_49220862_49240955_1	chr6	-	2102	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4602	False	NA	-8	True	AATAAA	-11	NA	49240955	49220861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
ENSMUSG00000029836.16_51447643_51460684_1	chr6	+	1756	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	133	0	0	0	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447642	51460684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029840.9_35486000_35516734_1	chr6	-	3712	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	89	159	0	-159	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACATGTTAGCAACATA	4237	False	NA	-29	True	AATAAA	-17	NA	35516734	35485999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
ENSMUSG00000029840.9_35488877_35516734_1	chr6	-	835	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	89	3036	0	-3036	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTCTATTGGAATCATT	4237	False	NA	NA	False	AGTAAA	-33	NA	35516734	35488876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
ENSMUSG00000029910.15_66512374_66518093_1	chr6	+	1446	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	0	6111	0	89	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGGATGGATTGTGTT	NA	False	NA	29	True	AATATA	-19	NA	66512373	66518093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029910.15_66512452_66518013_1	chr6	+	1288	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	78	6191	0	9	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCCTTGTGTTTTAAAT	NA	False	NA	-51	True	TATAAA	-34	NA	66512451	66518013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029911.15_40448349_40457929_1	chr6	+	630	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	63	3705	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	435.133695929577	1473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448348	40457929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448402_40457929_1	chr6	+	791	7	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1038.11106502789	1460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_40448608_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448402_40457929_2	chr6	+	605	7	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	1029.36805047239	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_40448422_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029916.12_40302419_40373696_1	chr6	+	2218	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	313	0	0	0	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302418	40373696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ENSMUSG00000029916.12_40302419_40373766_1	chr6	+	2368	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	0	70	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAATTATTTTTTTTC	NA	False	NA	78	True	NA	NA	NA	40302418	40373766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ENSMUSG00000029918.10_39779126_39787827_1	chr6	-	624	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	95	388	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787827	39779125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39779479_39782304_39782546_39787797
ENSMUSG00000029922.16_39374738_39397234_1	chr6	-	2884	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	162	0	-2	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397234	39374737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39375949_39397234_1	chr6	-	1673	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	162	1211	-2	128	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	NA	False	NA	-31	True	AATAAA	-12	NA	39397234	39375948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39375949_39397396_1	chr6	-	1835	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	1211	0	128	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	NA	False	NA	-31	True	AATAAA	-12	NA	39397396	39375948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39382473_39397064_1	chr6	-	583	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	168	0	-63	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397064	39382472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39382473_39397396_1	chr6	-	915	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	-164	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397396	39382472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUSG00000029924.13_39312920_39354606_1	chr6	-	2814	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	3	1213	0	0	multi-exon	TRUE	canonical	3	160	junction_14	38.6108925098626	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGCTTAAGCTTGAC	NA	False	NA	-8	True	AATAAA	-25	NA	39354606	39312919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUSG00000029993.17_86986218_87005443_1	chr6	+	1141	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	936.325364122963	729	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_86986321_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029993.17_86986218_87005443_2	chr6	+	1173	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	921.93755719951	843	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_86986353_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029993.17_86986218_87005443_3	chr6	+	1312	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	935.045821069748	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_86986492_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029993.17_86986218_87005443_4	chr6	+	1552	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	-600	-2	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029998.15_86363607_86374101_1	chr6	-	3641	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	35	619	0	-619	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTTTCTCTTCTTTTT	NA	False	NA	-7	True	ATTAAA	-14	NA	86374101	86363606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
ENSMUSG00000030002.16_85924326_85938625_1	chr6	-	1335	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	24	5076	-1	399	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTTTCCCTGTATAT	7344	False	NA	-1	True	AATAGA	-19	NA	85938625	85924325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000030002.16_85924494_85938625_1	chr6	-	1167	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	24	5244	-1	231	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAAAACTTTCTGAACA	7344	False	NA	-33	True	AATAAA	-16	NA	85938625	85924493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000030007.9_85429001_85445457_1	chr6	+	1936	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	505	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	10014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5115	False	NA	16	True	AGTAAA	-18	NA	85429000	85445457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445457_1	chr6	+	1903	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	538	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	10006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5148	False	NA	16	True	AGTAAA	-18	NA	85429033	85445457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030008.10_85423792_85428927_1	chr6	-	1056	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	25	-128	0	0	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428927	85423791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030041.10_82923883_83007164_1	chr6	+	1804	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	187.231641289607	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83006750
ENSMUSG00000030042.16_82595862_82629855_1	chr6	-	636	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	-4	111	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTTCTTTTTCTT	NA	False	NA	-13	True	NA	NA	NA	82629855	82595861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030042.16_82623682_82682346_1	chr6	-	1646	4	NIC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_3	397.998604129322	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	6109	False	NA	1	True	ATTAAA	-27	NA	82682346	82623681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163
ENSMUSG00000030042.16_82624297_82665732_1	chr6	-	900	4	NNC	ENSMUSG00000030042.16	novel	890	4	NA	NA	16614	0	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82665732	82624296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
ENSMUSG00000030042.16_82624297_82684791_1	chr6	-	1210	6	NNC	ENSMUSG00000030042.16	novel	890	4	NA	NA	-2445	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	451.986105981146	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	3664	False	NA	-36	True	NA	NA	NA	82684791	82624296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163_82682295_82683088_82683236_82684707
ENSMUSG00000030042.16_82624297_82684791_2	chr6	-	1079	5	NNC	ENSMUSG00000030042.16	novel	890	4	NA	NA	-2445	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_4	469.571812931739	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	3664	False	NA	-36	True	NA	NA	NA	82684791	82624296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82683088_82683236_82684707
ENSMUSG00000030042.16_82624712_82629855_1	chr6	-	684	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	55	1030	-4	112	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTATATTGC	NA	False	NA	-1	True	AATAAA	-19	NA	82629855	82624711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030042.16_82624712_82665732_1	chr6	-	485	4	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	16614	112	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTATATTGC	NA	False	NA	-1	True	AATAAA	-19	NA	82665732	82624711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
ENSMUSG00000030045.11_81938429_81942939_1	chr6	-	1222	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	0	526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.009293519759	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81942939	81938428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_81938566_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030045.11_81938429_81942939_2	chr6	-	1403	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	0	3597	0	526	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81942939	81938428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030045.11_81938552_81942939_1	chr6	-	1100	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	0	403	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	269.009293519759	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGTTCTGAGAATGCC	NA	False	NA	NA	False	NA	NA	NA	81942939	81938551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_81938559_81938738_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030045.11_81938552_81942939_2	chr6	-	1280	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	0	3720	0	403	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGTTCTGAGAATGCC	NA	False	NA	NA	False	NA	NA	NA	81942939	81938551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030056.9_87795429_87815723_1	chr6	-	1602	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	57	4178	-3	3061	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	87815723	87795428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030056.9_87795678_87815682_1	chr6	-	1312	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	98	4427	0	2812	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTAAATTTAGAGACACA	NA	False	NA	-1	True	AATACA	-19	NA	87815682	87795677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030056.9_87795767_87815723_1	chr6	-	1264	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	57	4516	-3	2723	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTTGCCCTATACTCT	NA	False	NA	-13	True	NA	NA	NA	87815723	87795766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030057.16_87820064_87828009_1	chr6	-	1629	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	79	467	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	4550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828009	87820063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030057.16_87820064_87828042_1	chr6	-	1662	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	46	467	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	5250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828042	87820063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030058.18_87864910_87889512_1	chr6	+	2961	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	114	1065	0	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATACTCAAAGAAACC	NA	False	NA	1	True	AATAAA	-21	NA	87864909	87889512	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUSG00000030060.15_87890728_87913611_1	chr6	+	1491	7	NNC	ENSMUSG00000030060.15	novel	1572	6	NA	NA	-189	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	526.39858683532	894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2775	False	NA	44	True	AATAAA	-30	NA	87890727	87913611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_87890828_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902797_87910223_87910417_87913071
ENSMUSG00000030061.17_97160968_97182521_1	chr6	-	2128	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	337	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182521	97160967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ENSMUSG00000030061.17_97161713_97182521_1	chr6	-	1383	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	1082	0	-745	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATAGAAATAATATACTT	NA	False	NA	NA	False	AATAAA	-19	NA	97182521	97161712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ENSMUSG00000030061.17_97161713_97182521_2	chr6	-	1425	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	87	745	0	-745	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATAGAAATAATATACTT	NA	False	NA	NA	False	AATAAA	-19	NA	97182521	97161712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUSG00000030062.8_88061464_88080941_1	chr6	+	2288	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	1345	0	572	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCTTTTGCTGTACTG	537	False	NA	9	True	AATAAA	-15	NA	88061463	88080941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
ENSMUSG00000030088.16_90548734_90576151_1	chr6	+	1707	12	ISM	ENSMUSG00000030088.16	ENSMUST00000204796.3	3025	23	20904	-9	4046	0	3prime_fragment	FALSE	canonical	3	182	junction_2	18.1799999090818	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	7923	False	NA	13	True	AATAAA	-23	NA	90548733	90576151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000030096.9_91661076_91732505_1	chr6	+	2602	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	42	3542	0	2746	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAATGCTGGGTGGAATT	NA	False	NA	NA	False	NA	NA	NA	91661075	91732505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ENSMUSG00000030103.12_108637590_108642931_1	chr6	+	2158	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	955	0	305	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGCTTTTGTGAGTAGT	NA	False	NA	11	True	AATAAA	-23	NA	108637589	108642931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUSG00000030103.12_108637590_108643734_1	chr6	+	2961	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	152	0	-152	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAATGGTCTCCTTGGTT	NA	False	NA	10	True	AATAAA	-22	NA	108637589	108643734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUSG00000030105.9_108760060_108798738_1	chr6	+	942	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	3501	0	4	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTGTGTTGAGGCCTCT	NA	False	NA	NA	False	GATAAA	-34	NA	108760059	108798738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ENSMUSG00000030105.9_108760060_108799359_1	chr6	+	1563	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	2880	0	625	multi-exon	FALSE	canonical	3	458	junction_6	33.5480583972042	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACTTCATCTGAATCCACG	NA	False	NA	NA	False	AATAAA	-17	NA	108760059	108799359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ENSMUSG00000030105.9_108760060_108800508_1	chr6	+	2712	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	1731	0	-1731	multi-exon	FALSE	canonical	3	458	junction_6	33.5480583972042	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTGACAATTTTACCTTA	NA	False	NA	18	True	AATAAA	-18	NA	108760059	108800508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ENSMUSG00000030116.15_122498797_122505591_1	chr6	+	591	5	ISM	ENSMUSG00000030116.15	ENSMUST00000142896.8	425	9	8162	-294	-661	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7070	False	NA	4	True	AATACA	-15	NA	122498796	122505591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122499817_122505591_1	chr6	+	533	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	359	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8090	False	NA	4	True	AATACA	-15	NA	122499816	122505591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122499817_122506253_1	chr6	+	1195	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	359	4	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACGGGCATGTTTTATT	8090	False	NA	NA	False	AAAAAG	-4	NA	122499816	122506253	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030117.6_122582718_122587046_1	chr6	-	1701	3	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	0	-356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	352	768	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTTGTTTGTTTTAT	9980	False	NA	-3	True	AATATA	-31	NA	122587046	122582717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_122582739_122582806_122584095_122586654
ENSMUSG00000030117.6_122582718_122587046_2	chr6	-	1769	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	356	0	-356	multi-exon	FALSE	canonical	3	704	junction_1	0	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTTGTTTGTTTTAT	9980	False	NA	-3	True	AATATA	-31	NA	122587046	122582717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122584095_122586654
ENSMUSG00000030117.6_122583206_122587046_1	chr6	-	1281	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	844	0	-844	multi-exon	FALSE	canonical	3	704	junction_1	0	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTATGCTCTCTT	9980	False	NA	-27	True	AATAAA	-13	NA	122587046	122583205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122584095_122586654
ENSMUSG00000030120.15_124908368_124913108_1	chr6	+	1679	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-27	0	0	0	intron_retention	FALSE	canonical	3	3577	junction_4	212.973122765311	2612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908367	124913108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
ENSMUSG00000030120.15_124908368_124913108_2	chr6	+	1497	9	NNC	ENSMUSG00000030120.15	novel	1475	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1306.5970531786	2502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908367	124913108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912200_124912409_124912585
ENSMUSG00000030122.13_124890644_124891637_1	chr6	-	651	3	ISM	ENSMUSG00000030122.13	ENSMUST00000181150.2	629	4	550	-368	0	0	3prime_fragment	FALSE	canonical	3	591	junction_2	78.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124891637	124890643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_124891196_124891370_124891430_124891597
ENSMUSG00000030127.16_124935376_124942253_1	chr6	-	1263	8	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	695.556714335461	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942253	124935375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ENSMUSG00000030127.16_124935376_124942475_1	chr6	-	2167	8	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942475	124935375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_124935779_124942253_1	chr6	-	1725	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942253	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ENSMUSG00000030127.16_124935779_124942253_2	chr6	-	1792	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_7	623.446346479611	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942253	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942114
ENSMUSG00000030127.16_124935779_124942387_1	chr6	-	1676	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942387	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_124935779_124942475_1	chr6	-	1925	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	26	403	0	0	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_124935779_124942475_2	chr6	-	1559	7	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_6	644.566951957324	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124942364
ENSMUSG00000030127.16_124935779_124942475_3	chr6	-	1701	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	606.197381474155	177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941749_124941892_124942364
ENSMUSG00000030127.16_124935779_124942475_4	chr6	-	1764	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030138.9_118360342_118373156_1	chr6	-	1602	9	ISM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	23279	0	23209	0	3prime_fragment	FALSE	canonical	3	447	junction_4	27.5397440075248	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	NA	False	NA	-1	True	ATTAAA	-16	NA	118373156	118360341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087
ENSMUSG00000030177.15_120301284_120334333_1	chr6	-	2522	13	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	86.4659133223415	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334333	120301283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_120302105_120302135_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
ENSMUSG00000030177.15_120301284_120334333_2	chr6	-	2468	13	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.8387884757201	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334333	120301283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_120302105_120302135_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
ENSMUSG00000030177.15_120301284_120334333_3	chr6	-	2499	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	100	-712	5	0	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334333	120301283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
ENSMUSG00000030188.13_131261476_131270207_1	chr6	-	642	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	125	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTTACATGGTTTTTA	NA	False	NA	NA	False	TATAAA	-19	NA	131270207	131261475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUSG00000030200.14_134391428_134415704_1	chr6	+	2167	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	37	-626	0	5	multi-exon	FALSE	canonical	3	57	junction_3	10	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCCTGTAACCCAAGC	NA	False	NA	18	True	AATAAA	-30	NA	134391427	134415704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ENSMUSG00000030224.11_137712076_137728094_1	chr6	+	1814	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	836	0	420	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTTTCTCTTTTTTTGG	NA	False	NA	89	True	AATAAA	-16	NA	137712075	137728094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUSG00000030245.11_142332947_142347862_1	chr6	+	1096	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	1722	0	426	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTGGAGCCAGATAAAA	NA	False	NA	75	True	AATAAA	-27	NA	142332946	142347862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ENSMUSG00000030245.11_142332947_142349584_1	chr6	+	2794	6	NNC	ENSMUSG00000030245.11	novel	2818	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	241.036096881774	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268_142349209_142349232
ENSMUSG00000030246.13_142435978_142453669_1	chr6	-	1163	7	NIC	ENSMUSG00000030246.13	novel	1287	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUSG00000030264.15_113023288_113045234_1	chr6	+	2061	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	102	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	54.2445309298778	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023287	113045234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030264.15_113023288_113045234_2	chr6	+	2130	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023287	113045234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030264.15_113023419_113045234_1	chr6	+	1999	10	NIC	ENSMUSG00000030264.15	novel	855	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023418	113045234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030265.15_145165198_145180077_1	chr6	-	1517	3	ISM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	15888	2773	-3527	508	3prime_fragment	FALSE	canonical	3	862	junction_1	24.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGATGTTCGCTTCAAGG	NA	False	NA	-5	True	AATAAA	-14	NA	145180077	145165197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_145166451_145177820_145177981_145179973
ENSMUSG00000030268.18_144944884_144994538_1	chr6	-	2510	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	0	5323	0	0	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	NA	False	NA	-24	True	AATAAA	-16	NA	144994538	144944883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
ENSMUSG00000030268.18_144944884_145021779_1	chr6	-	2423	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	1237.32990346148	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8616	False	NA	-24	True	AATAAA	-16	NA	145021779	144944883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_144946031_144950076_144950152_144953341_144953477_144955771_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUSG00000030268.18_144944884_145021779_2	chr6	-	2425	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	0	131	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8616	False	NA	-24	True	AATAAA	-16	NA	145021779	144944883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUSG00000030286.7_113492478_113508595_1	chr6	-	1324	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	18	643	-16	-643	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGCATTTTACCTTGA	NA	False	NA	-19	True	AGTAAA	-24	NA	113508595	113492477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUSG00000030298.11_113705023_113717688_1	chr6	-	1156	8	NNC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	374.229003337229	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	5	True	NA	-10	True	AATAAA	-23	NA	113717688	113705022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711616_113713336_113713449_113714914_113714960_113717605
ENSMUSG00000030304.12_148081541_148113520_1	chr6	-	2858	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	352	964	0	-964	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTAAAGCAAACTTTT	NA	False	NA	-12	True	ATTAAA	-17	NA	148113520	148081540	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030304.12_148082808_148113520_1	chr6	-	1591	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	352	2231	0	0	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGATGTCAGAATAAAA	NA	False	NA	-65	True	GATAAA	-25	NA	148113520	148082807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030316.14_114981156_115014816_1	chr6	-	1333	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	21	-186	0	186	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTATGGTTGATTT	NA	False	NA	NA	False	NA	NA	NA	115014816	114981155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030322.13_115819305_115830326_1	chr6	-	1961	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	6	1647	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	7887	False	NA	NA	False	NA	NA	NA	115830326	115819304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
ENSMUSG00000030330.16_125016811_125025965_2	chr6	+	1346	8	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	49.655548223615	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125026228_1	chr6	+	1609	8	NIC	ENSMUSG00000030330.16	novel	1487	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	49.655548223615	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	7	True	AATAAA	-17	NA	125016810	125026228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030335.7_125169180_125170521_1	chr6	+	664	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	52	2711	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125169179	125170521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125169397_125169478_125169590_125170185
ENSMUSG00000030335.7_125169350_125170521_1	chr6	+	494	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	222	2711	170	0	multi-exon	FALSE	canonical	3	716	junction_1	10	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125169349	125170521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125169397_125169478_125169590_125170185
ENSMUSG00000030357.11_128407626_128415640_1	chr6	-	1657	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	560	0	-560	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTGGATGATGGCTTT	9269	False	NA	NA	False	NA	NA	NA	128415640	128407625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ENSMUSG00000030359.15_128460530_128464845_1	chr6	-	598	7	ISM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	38838	0	-27	0	3prime_fragment	FALSE	canonical	3	30	junction_1	17.1464281994822	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464845	128460529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843
ENSMUSG00000030403.10_18990854_19005536_1	chr7	-	2009	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	206	0	206	0	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005536	18990853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUSG00000030403.10_18990854_19005742_1	chr7	-	1776	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	402.203443545676	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998751_19005438
ENSMUSG00000030423.8_37962239_37970699_1	chr7	-	1146	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	148	819	0	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970699	37962238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
ENSMUSG00000030423.8_37962239_37970803_1	chr7	-	1250	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	44	819	-6	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970803	37962238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
ENSMUSG00000030432.13_4795989_4797561_1	chr7	+	553	5	NNC	ENSMUSG00000030432.13	novel	772	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2852.82127901486	15051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2809	False	NA	17	True	AATAAA	-32	NA	4795988	4797561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_4795998_4796252_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000030432.13_4795989_4797561_2	chr7	+	1245	3	NIC	ENSMUSG00000030432.13	novel	772	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	6459	junction_1	95	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2809	False	NA	17	True	AATAAA	-32	NA	4795988	4797561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_4796409_4796501_4797182_4797416
ENSMUSG00000030432.13_4795989_4797561_3	chr7	+	486	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	116	504	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	15191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2809	False	NA	17	True	AATAAA	-32	NA	4795988	4797561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000030435.17_5065244_5082932_1	chr7	+	2076	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	102	5	0	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ENSMUSG00000030447.16_55491954_55580446_1	chr7	+	4401	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	135	1904	0	200	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCGTTTGTTCATTGG	NA	False	NA	11	True	AATAAA	-14	NA	55491953	55580446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030447.16_55491998_55580246_1	chr7	+	4157	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	179	2104	0	0	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCAGTTTCTTTTAA	NA	False	NA	5	True	NA	NA	NA	55491997	55580246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030452.17_55581035_55612198_2	chr7	-	2975	7	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612198	55581034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ENSMUSG00000030452.17_55582369_55612198_2	chr7	-	1837	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	26	1334	0	629	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTATTTTTTCCATTGG	NA	False	NA	NA	False	TATAAA	-3	NA	55612198	55582368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUSG00000030471.18_48438780_48477188_1	chr7	+	2376	17	NIC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	63.8620339090449	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438779	48477188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_48438886_48445653_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUSG00000030493.14_35091730_35096261_2	chr7	-	1350	5	FSM	ENSMUSG00000030493.14	ENSMUST00000154597.2	831	5	-128	-391	0	0	multi-exon	FALSE	canonical	3	12	junction_4	59.3316947339278	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096261	35091729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095757_35096110
ENSMUSG00000030494.14_35033755_35091714_1	chr7	+	3348	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	160	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033754	35091714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUSG00000030505.18_49428185_49508013_1	chr7	+	2416	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	91	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49428184	49508013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
ENSMUSG00000030512.14_65710292_65724328_1	chr7	+	1035	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	206	7	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
ENSMUSG00000030512.14_65710292_65724328_2	chr7	+	2018	7	NIC	ENSMUSG00000030512.14	novel	955	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	2772	junction_5	192.939253537365	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979_65721074_65724069
ENSMUSG00000030523.19_63835207_63861176_1	chr7	+	1743	9	NIC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	271.883678022422	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	27	True	ATTAAA	-24	NA	63835206	63861176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835207_63861176_2	chr7	+	2001	11	NIC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	27	True	ATTAAA	-24	NA	63835206	63861176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835298_63861176_1	chr7	+	1824	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	169	-1	0	1	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	27	True	ATTAAA	-24	NA	63835297	63861176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030528.13_80104840_80152085_1	chr7	-	2567	16	ISM	ENSMUSG00000030528.13	ENSMUST00000170315.3	4770	22	32661	0	12355	0	3prime_fragment	FALSE	canonical	3	335	junction_6	43.2257125126032	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTAGTGGCCATTGTTT	NA	False	NA	-33	True	AATAAA	-22	NA	80152085	80104839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030
ENSMUSG00000030532.7_79992892_79995850_1	chr7	+	858	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	40	612	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992891	79995850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
ENSMUSG00000030536.11_80386128_80453039_1	chr7	-	2918	24	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	125	24797	-10	4698	5prime_fragment	FALSE	canonical	3	539	junction_23	37.1883775571187	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACAGCTGTCCGACA	NA	False	NA	NA	False	AGTAAA	-18	NA	80453039	80386127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
ENSMUSG00000030538.16_79876907_79882372_1	chr7	-	846	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	189	12	0	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUSG00000030556.14_67164622_67294979_2	chr7	-	1364	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-468	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	572	False	NA	NA	False	AATACA	-17	NA	67294979	67164621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030588.13_28937778_28946954_1	chr7	+	946	7	NIC	ENSMUSG00000030588.13	novel	1126	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	581.164826495509	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ENSMUSG00000030588.13_28937952_28946954_1	chr7	+	1055	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	515.665569523346	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6235	False	NA	12	True	AATAAA	-15	NA	28937951	28946954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030588.13_28937952_28946954_2	chr7	+	1103	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	482.335940174142	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6235	False	NA	12	True	AATAAA	-15	NA	28937951	28946954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030589.16_28837060_28851046_1	chr7	+	2042	16	ISM	ENSMUSG00000030589.16	ENSMUST00000094617.11	4617	17	2702	2318	2562	0	3prime_fragment	TRUE	non_canonical	0	0	junction_2	17.9245331567907	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	415	False	NA	20	True	AAAAAG	-19	NA	28837059	28851046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_28837151_28838235_28838346_28838468_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848572_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000030589.16_28837060_28851046_2	chr7	+	2024	16	ISM	ENSMUSG00000030589.16	ENSMUST00000032811.12	4621	17	2702	2340	2562	0	3prime_fragment	FALSE	non_canonical	0	0	junction_2	15.5905954558082	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	415	False	NA	20	True	AAAAAG	-19	NA	28837059	28851046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000030591.18_28873613_28879940_1	chr7	-	1144	5	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	220	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879940	28873612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
ENSMUSG00000030591.18_28873954_28879940_1	chr7	-	1013	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	37	341	-34	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	-12	True	AATAAA	-18	NA	28879940	28873953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUSG00000030595.16_28458457_28466065_1	chr7	-	1369	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	-126	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28466065	28458456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUSG00000030603.17_27741132_27749473_1	chr7	-	1529	10	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	2113	junction_4	111.139329750021	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749473	27741131	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUSG00000030609.19_78545602_78558130_1	chr7	+	2202	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	-73	2827	0	1	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	78545601	78558130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_78545699_78557329_1	chr7	+	1190	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	17	800	0	216	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAATAATTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	78545698	78557329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_78545699_78557329_2	chr7	+	1304	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	24	3628	0	216	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAATAATTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	78545698	78557329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_78545699_78558130_1	chr7	+	2105	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	24	2827	0	1	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	78545698	78558130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
ENSMUSG00000030611.11_78433104_78442737_1	chr7	+	819	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	237	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUSG00000030612.7_78425089_78432837_1	chr7	-	1029	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	105	0	-105	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATTTGTCCTTGGTGG	NA	False	NA	-5	True	ATTAAA	-22	NA	78432837	78425088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
ENSMUSG00000030613.14_92210703_92231287_1	chr7	+	1035	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	346	215	346	-215	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTGTAAATGAAGTTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	92210702	92231287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUSG00000030613.14_92210703_92231502_1	chr7	+	1250	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	346	0	346	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210702	92231502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUSG00000030614.9_90118031_90125203_1	chr7	-	868	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	6	1385	0	1100	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCTTTCTTTCTTCA	6026	False	NA	NA	False	TATAAA	-17	NA	90125203	90118030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030619.11_89603868_89629767_1	chr7	-	1637	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	143	-277	0	0	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	1211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629767	89603867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89603868_89629767_2	chr7	-	1548	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	1116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629767	89603867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89603868_89629826_1	chr7	-	1696	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	84	-277	-59	0	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629826	89603867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89603868_89629826_2	chr7	-	1607	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629826	89603867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030629.16_84264262_84339091_1	chr7	-	1593	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	74	1288	0	0	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84339091	84264261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ENSMUSG00000030630.17_84234367_84254994_1	chr7	-	1429	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	156	0	-57	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84254994	84234366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
ENSMUSG00000030649.19_101545615_101548752_1	chr7	+	808	6	FSM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	-9	2304	0	1	multi-exon	FALSE	canonical	3	304	junction_1	109.312396369305	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTATTCCCTGTTTGTTG	7817	False	NA	26	True	AATAAA	-26	NA	101545614	101548752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_101545615_101548752_2	chr7	+	803	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	98	junction_2	189.568562794573	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTATTCCCTGTTTGTTG	7817	False	NA	26	True	AATAAA	-26	NA	101545614	101548752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_101545615_101548752_3	chr7	+	959	5	NIC	ENSMUSG00000030649.19	novel	937	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	98	junction_2	210.842802817644	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTATTCCCTGTTTGTTG	7817	False	NA	26	True	AATAAA	-26	NA	101545614	101548752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106
ENSMUSG00000030654.10_117718748_117728797_1	chr7	-	1449	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	634	0	-634	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTTAAGAGTAAGCCTG	NA	False	NA	19	True	NA	NA	NA	117728797	117718747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUSG00000030654.10_117719523_117728797_1	chr7	-	674	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	1409	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	False	NA	NA	False	GATAAA	-30	NA	117728797	117719522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUSG00000030659.15_116103619_116139823_1	chr7	+	1503	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGTTTTTATCTTTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	116103618	116139823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUSG00000030662.11_121148645_121184830_1	chr14	+	3928	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	9	581	0	0	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTGTAGAACTTCAGT	1840	False	NA	18	True	AATAAA	-20	NA	121148644	121184830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUSG00000030663.13_115692601_115703917_1	chr7	+	886	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	65	528	0	-149	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCATCATCTGCCCTC	NA	False	NA	13	True	AATAAA	-23	NA	115692600	115703917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUSG00000030663.13_115692601_115704316_1	chr7	+	1285	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	65	129	0	-126	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTCTCTGCTCATTTAG	NA	False	NA	10	True	GATAAA	-26	NA	115692600	115704316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUSG00000030672.13_126808062_126813460_1	chr7	+	777	8	NIC	ENSMUSG00000030672.13	novel	653	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	59	junction_2	781.490099431979	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	242	False	NA	32	True	AATAAA	-24	NA	126808061	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_126808124_126808455_126808571_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_1	chr7	+	611	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	719.411101758468	310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_126811862_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_2	chr7	+	629	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_3	chr7	+	643	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	712.609621196783	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_126811894_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_4	chr7	+	782	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1071	10	0	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126812286_126813460_1	chr7	+	558	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1506	10	0	0	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4466	False	NA	32	True	AATAAA	-24	NA	126812285	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126812926_126813460_1	chr7	+	428	2	FSM	ENSMUSG00000030672.13	ENSMUST00000139613.2	285	2	-142	-1	-142	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	249	False	NA	32	True	AATAAA	-24	NA	126812925	126813460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126813156_126813262
ENSMUSG00000030674.6_126706440_126721216_1	chr7	-	1714	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	182	154	-3	-154	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTGTTGTTGTTGTTG	NA	False	NA	-6	True	NA	NA	NA	126721216	126706439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ENSMUSG00000030674.6_126706942_126721216_1	chr7	-	1212	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	182	656	-3	-656	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAATGAGTGGTTGGTAAA	NA	False	NA	1	True	NA	NA	NA	126721216	126706941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ENSMUSG00000030677.9_126626901_126641578_1	chr7	-	2025	15	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	203.933712719779	373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGGTTTTTGAGG	7990	False	NA	-4	True	AATACA	-15	NA	126641578	126626900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631867_126631893_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUSG00000030680.7_126614237_126616213_1	chr7	-	1087	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	311	14	311	0	multi-exon	FALSE	canonical	3	276	junction_2	10	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	9741	False	NA	-34	True	AATAAA	-14	NA	126616213	126614236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUSG00000030682.5_126575550_126579334_1	chr7	+	1510	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	464	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTGTTTACTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	126575549	126579334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030682.5_126575550_126579671_1	chr7	+	1847	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	464	-337	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575549	126579671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030689.16_126451605_126461010_1	chr7	-	1060	7	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	312.41341022576	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9194	False	NA	-4	True	ATTAAA	-15	NA	126461010	126451604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461010_2	chr7	-	1125	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	848	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9194	False	NA	-4	True	ATTAAA	-15	NA	126461010	126451604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461043_1	chr7	-	1250	8	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	206	junction_2	316.419574202949	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9161	False	NA	-4	True	ATTAAA	-15	NA	126461043	126451604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461533_1	chr7	-	1392	8	NIC	ENSMUSG00000030689.16	novel	1741	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_7	292.908775936141	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9933	False	NA	-4	True	ATTAAA	-15	NA	126461533	126451604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ENSMUSG00000030695.17_126394406_126399218_1	chr7	-	1346	9	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_8	6630.75357708308	5508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126399218	126394405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399173
ENSMUSG00000030706.18_100197916_100232309_1	chr7	-	1327	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	2958	0	0	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCTGTATTGGTCTATT	NA	False	NA	NA	False	NA	NA	NA	100232309	100197915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_1	chr7	-	916	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	3369	0	117	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030708.15_100152228_100160988_1	chr7	-	789	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	3015	-60	0	0	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100160988	100152227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
ENSMUSG00000030714.15_126248494_126271951_1	chr7	+	1239	11	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	179.607043291737	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030714.15_126248494_126271951_2	chr7	+	1404	9	ISM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	13	146	0	0	intron_retention	FALSE	canonical	3	419	junction_3	30.3840007240653	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327
ENSMUSG00000030714.15_126248494_126271951_3	chr7	+	1153	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	13	146	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030717.10_126222424_126224661_1	chr7	-	639	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	187	3	-14	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	1002	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGCTTTGGCGTGTGTTG	NA	False	NA	-11	True	AATAAA	-44	NA	126224661	126222423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126222752_126224061_126224206_126224494
ENSMUSG00000030718.10_99975944_100021175_1	chr7	-	2433	14	FSM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	339	0	-34	0	multi-exon	FALSE	canonical	0	0	junction_12	101.852195962999	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGAGGAGCTGTCCT	NA	False	NA	-8	True	AATAAA	-17	NA	100021175	99975943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
ENSMUSG00000030720.17_126171262_126182398_1	chr7	-	1675	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	21	690	0	0	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCTTTTTGTGCAGTC	NA	False	NA	-6	True	AATAAA	-14	NA	126182398	126171261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ENSMUSG00000030720.17_126171262_126182514_1	chr7	-	1585	16	ISM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	938	690	0	0	3prime_fragment	FALSE	canonical	3	45	junction_15	32.0638252379358	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCTTTTTGTGCAGTC	NA	False	NA	-6	True	AATAAA	-14	NA	126182514	126171261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474
ENSMUSG00000030722.8_125982215_125995909_1	chr7	-	3199	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	189	0	-189	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCAACTCCCTTTTTT	NA	False	NA	-2	True	AATAAA	-27	NA	125995909	125982214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUSG00000030722.8_125984049_125995909_1	chr7	-	1365	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	2023	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTTTACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	125995909	125984048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUSG00000030726.17_99732617_99770709_1	chr7	-	1707	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	63	1299	-36	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTGCCTAGGAGAATTC	NA	False	NA	-10	True	TATAAA	-17	NA	99770709	99732616	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUSG00000030738.12_126146083_126165542_1	chr7	-	3014	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	41	456	-12	-456	intron_retention	FALSE	canonical	3	1924	junction_14	261.383841247645	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	-8	True	ATTAAA	-18	NA	126165542	126146082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
ENSMUSG00000030738.12_126146083_126165542_2	chr7	-	2886	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	41	456	-12	-456	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	-8	True	ATTAAA	-18	NA	126165542	126146082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ENSMUSG00000030741.16_125969239_125976593_1	chr7	-	2111	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	122.006830409886	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976593	125969238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
ENSMUSG00000030744.14_99128089_99132857_1	chr7	-	834	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	88	986	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	31677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8423	False	NA	-34	True	AATAAA	-36	NA	99132857	99128088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUSG00000030750.14_125066812_125090603_1	chr7	-	916	8	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	366.156039002444	683	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090603	125066811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_125067016_125067450_125067572_125068200_125068318_125070323_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030750.14_125066812_125090603_2	chr7	-	955	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	165	0	-32	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090603	125066811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030751.19_113863689_113875295_1	chr7	-	1295	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	58	-152	-6	152	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	4294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTATGTAGACTGGCT	NA	False	NA	NA	False	AATAAA	-17	NA	113875295	113863688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_1	chr7	-	1138	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	170	junction_8	798.19900671511	4259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873358_113873650_113873696_113875235
ENSMUSG00000030759.17_113113068_113167580_1	chr7	+	1797	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	27	3138	0	168	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAGTAAATTATGGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	113113067	113167580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000030759.17_113113068_113170092_1	chr7	+	4309	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	27	626	0	427	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTATTGTATTTTTACA	NA	False	NA	NA	False	AATAAA	-24	NA	113113067	113170092	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000030760.15_97865650_97958713_1	chr7	-	1254	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	32	10054	0	0	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958713	97865649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ENSMUSG00000030774.14_97492142_97560489_1	chr7	+	1966	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	1099	0	0	multi-exon	TRUE	canonical	3	24	junction_1	56.3067853960129	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTCCTGATCTAGTG	NA	False	NA	45	True	NA	NA	NA	97492141	97560489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030788.17_110414790_110443609_1	chr7	-	1925	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	55	2052	0	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAATTGAAGTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	110443609	110414789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
ENSMUSG00000030793.5_127591268_127592908_1	chr7	-	1281	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	131	2388	131	-456	multi-exon	FALSE	canonical	3	1219	junction_2	45	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAAGCCTTTTTTTTTTT	NA	False	NA	-4	True	NA	NA	NA	127592908	127591267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030793.5_127591805_127592908_1	chr7	-	744	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	131	2925	131	-993	multi-exon	FALSE	canonical	3	1219	junction_2	45	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGGGATGTTTTTGCT	NA	False	NA	-5	True	AAAACA	-18	NA	127592908	127591804	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030796.18_44865215_44883059_1	chr7	+	2167	12	NIC	ENSMUSG00000030796.18	novel	2140	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	97.4747265400093	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	5468	False	NA	NA	False	AATAAA	-29	NA	44865214	44883059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_44865331_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030802.15_127503254_127507795_1	chr7	+	1807	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	0	1598	0	15	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	447	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGGAGGGCAGGCGAGC	NA	False	NA	43	True	ATTAAA	-35	NA	127503253	127507795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
ENSMUSG00000030815.12_127172552_127182472_2	chr7	+	1468	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172551	127182472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030822.16_127070224_127075930_1	chr7	+	2054	12	ISM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	681	1	0	0	3prime_fragment	FALSE	canonical	3	60	junction_1	50.8389126685683	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070223	127075930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUSG00000030824.18_45142303_45159798_1	chr7	-	2400	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	32	2421	11	229	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTGTGGCTCAGTTGGC	NA	False	NA	-13	True	ATTAAA	-16	NA	45159798	45142302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUSG00000030824.18_45142532_45159798_1	chr7	-	2171	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	32	2650	11	0	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159798	45142531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUSG00000030825.20_45208630_45216743_1	chr7	+	1210	5	ISM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	3162	-1	0	1	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGAGTGGTCGTGTC	NA	False	NA	8	True	NA	NA	NA	45208629	45216743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030846.16_128044004_128063376_1	chr7	-	1877	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	-297	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063376	128044003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUSG00000030851.16_46510710_46527416_1	chr7	+	1137	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	83	150	0	-108	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAATCTCAAGGCTAGAA	NA	False	NA	NA	False	AATAAA	-19	NA	46510709	46527416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
ENSMUSG00000030861.16_131012330_131047938_1	chr7	+	3346	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	0	2735	0	0	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATTCTCCCTTTTTATG	NA	False	NA	21	True	AATAAA	-25	NA	131012329	131047938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
ENSMUSG00000030868.7_121732295_121747455_2	chr7	+	689	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	31	812	0	-349	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTCCTGTTTTTGACA	NA	False	NA	6	True	GATAAA	-22	NA	121732294	121747455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUSG00000030869.12_121687382_121701074_1	chr7	-	688	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	35	2756	0	299	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATCGTTTCTGCTGAA	6393	False	NA	NA	False	TTTAAA	-36	NA	121701074	121687381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_121690056_121701074_1	chr7	-	743	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6393	False	NA	-13	True	AATAAA	-14	NA	121701074	121690055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_121690056_121701074_2	chr7	-	665	5	FSM	ENSMUSG00000030869.12	ENSMUST00000106471.9	552	5	-115	2	0	0	multi-exon	FALSE	canonical	3	27	junction_1	2300.90270328843	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6393	False	NA	-13	True	AATAAA	-14	NA	121701074	121690055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121690213_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_121690056_121701074_3	chr7	-	639	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	0	777	0	0	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6393	False	NA	-13	True	AATAAA	-14	NA	121701074	121690055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030871.12_121637882_121666293_1	chr7	-	2015	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	193	-162	0	162	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGCCAGTGCGTCATTA	NA	False	NA	-4	True	NA	NA	NA	121666293	121637881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
ENSMUSG00000030871.12_121638044_121666293_1	chr7	-	1853	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	193	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666293	121638043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
ENSMUSG00000030872.15_121587988_121596588_1	chr7	-	1551	5	ISM	ENSMUSG00000030872.15	ENSMUST00000144779.2	2351	10	5126	0	1684	0	3prime_fragment	FALSE	canonical	3	830	junction_4	23.3920392441531	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGGTGTTGAGTCCA	NA	False	NA	-5	True	AATAAA	-14	NA	121596588	121587987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513
ENSMUSG00000030872.15_121587988_121620410_1	chr7	-	2837	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	35	2043	0	0	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGGTGTTGAGTCCA	NA	False	NA	-5	True	AATAAA	-14	NA	121620410	121587987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
ENSMUSG00000030879.11_105458525_105460212_1	chr7	-	1094	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	94	6112	-6	339	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	1403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGGCTCAGTTTGCTT	NA	False	NA	-2	True	NA	NA	NA	105460212	105458524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030879.11_105458864_105460306_1	chr7	-	849	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	0	6451	0	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460306	105458863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030879.11_105458887_105460212_1	chr7	-	732	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	94	6474	-6	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTGACTTTCTTGTCCT	NA	False	NA	-28	True	GATAAA	-20	NA	105460212	105458886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030880.15_120517007_120545065_1	chr7	+	2604	21	FSM	ENSMUSG00000030880.15	ENSMUST00000033173.15	4194	21	0	1590	0	21	multi-exon	FALSE	canonical	3	284	junction_16	33.3787357459805	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGTTTAATATTTTCCT	NA	False	NA	34	True	AATAAA	-36	NA	120517006	120545065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
ENSMUSG00000030884.13_120234463_120258497_1	chr7	+	1582	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	64	250	0	-250	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	19	True	AATAAA	-15	NA	120234462	120258497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUSG00000030888.15_105381414_105385714_1	chr7	-	2302	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	274	477	-134	197	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCGTTGATCTCACT	9853	False	NA	-10	True	AATAAA	-14	NA	105385714	105381413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
ENSMUSG00000030890.17_105385878_105392129_1	chr7	+	1713	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	79	3	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385877	105392129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000030894.6_105395126_105401414_1	chr7	-	2422	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	28	1108	6	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401414	105395125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ENSMUSG00000030894.6_105395265_105401414_1	chr7	-	2283	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	28	1247	6	-139	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGGCTGCAATCTATT	NA	False	NA	NA	False	NA	NA	NA	105401414	105395264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ENSMUSG00000030917.14_119701713_119720209_1	chr7	+	1347	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	137	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701712	119720209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUSG00000030934.10_132159354_132178127_1	chr7	-	2005	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	147	0	-147	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAACAGAGTATTTTGTA	NA	False	NA	-25	True	AATAAA	-19	NA	132178127	132159353	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
ENSMUSG00000030960.17_132428962_132454368_1	chr7	-	1297	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	34	-224	0	224	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAGAGATAATGTCT	NA	False	NA	-9	True	ATTAAA	-17	NA	132454368	132428961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ENSMUSG00000030978.11_102090902_102118133_1	chr7	+	3152	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	845	0	244	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	102090901	102118133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030978.11_102091090_102118133_1	chr7	+	2964	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	188	845	0	244	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	102091089	102118133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030979.14_133288085_133310788_1	chr7	-	1549	10	FSM	ENSMUSG00000030979.14	ENSMUST00000033276.11	1762	10	222	-9	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5163367087644	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310788	133288084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUSG00000030980.18_118444724_118454907_1	chr7	-	1789	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	314	3279	0	0	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGGTCACCTTCCGTTA	NA	False	NA	-35	True	AATAAA	-13	NA	118454907	118444723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
ENSMUSG00000030980.18_118444724_118454907_2	chr7	-	1742	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGGTCACCTTCCGTTA	NA	False	NA	-35	True	AATAAA	-13	NA	118454907	118444723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_118445318_118447719_118447798_118449843_118449910_118451621_118452564_118454845
ENSMUSG00000030980.18_118444983_118454907_2	chr7	-	1530	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	314	3538	0	-259	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTTGATCAGTTG	NA	False	NA	-4	True	ATTAAA	-23	NA	118454907	118444982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
ENSMUSG00000030983.5_133311131_133322874_1	chr7	+	1175	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	69	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1376	False	NA	23	True	AATAAA	-24	NA	133311130	133322874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133322675_133361851_1	chr7	-	2851	12	FSM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	147	0	147	0	multi-exon	FALSE	canonical	3	66	junction_11	95.5958261822716	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133361851	133322674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133361749
ENSMUSG00000030990.19_101872279_101887774_1	chr7	+	2002	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	3	-804	0	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	638	False	NA	16	True	AATAAA	-23	NA	101872278	101887774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_101872279_101887774_2	chr7	+	1890	6	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	638	False	NA	16	True	AATAAA	-23	NA	101872278	101887774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000031007.3_12454040_12482983_1	chrX	+	2019	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	305	0	-305	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	1142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCACTGCAATTCTG	NA	False	NA	32	True	AATAAA	-16	NA	12454039	12482983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUSG00000031021.14_109335771_109351454_1	chr7	-	941	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	32	730	-1	-728	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGTGCCTGGAACAAGC	NA	False	NA	NA	False	AATAAA	-28	NA	109351454	109335770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUSG00000031023.6_109302959_109311175_2	chr7	+	745	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	62	221	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311175_3	chr7	+	914	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311396_2	chr7	+	1135	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031027.16_108878430_108986772_1	chr7	-	1707	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51252	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986772	108878429	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
ENSMUSG00000031059.10_20481565_20483514_1	chrX	-	564	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	344	0	344	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483514	20481564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUSG00000031059.10_20481565_20483858_1	chrX	-	820	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_3	964.303317887525	1208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_20481782_20481952_20482084_20483298_20483521_20483608
ENSMUSG00000031066.11_20570173_20586530_1	chrX	+	3191	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	28	248	0	-246	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTGGCTTTGTTTCTTC	NA	False	NA	9	True	CATAAA	-24	NA	20570172	20586530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUSG00000031068.9_137039384_137069916_1	chr7	+	1237	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	41	407	0	-407	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	4093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031078.16_143989472_144024482_1	chr7	-	3022	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	264	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024482	143989471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUSG00000031095.16_37622451_37665073_1	chrX	-	3044	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	300	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665073	37622450	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ENSMUSG00000031134.17_56428708_56438341_1	chrX	-	2321	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	-182	0	182	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438341	56428707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ENSMUSG00000031139.17_59101316_59223621_1	chrX	-	3812	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59223621	59101315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ENSMUSG00000031139.17_59157805_59223621_1	chrX	-	2738	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-56486	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_14	93.2665972536004	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59223621	59157804	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ENSMUSG00000031148.15_7563370_7574870_1	chrX	+	1948	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	1631	0	424	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTCAAAGGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	7563369	7574870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ENSMUSG00000031149.8_7594800_7597303_1	chrX	+	1217	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	122	0	122	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1292	False	NA	7	True	AATAAA	-20	NA	7594799	7597303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUSG00000031157.11_7760758_7765135_1	chrX	-	1120	7	NIC	ENSMUSG00000031157.11	novel	1104	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	180.072824774373	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	669	False	NA	-1	True	AATAAA	-22	NA	7765135	7760757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765018
ENSMUSG00000031157.11_7760758_7765218_1	chrX	-	1017	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	21	-275	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	586	False	NA	-1	True	AATAAA	-22	NA	7765218	7760757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
ENSMUSG00000031158.12_7765596_7773106_1	chrX	+	897	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	1484	0	-103	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTCTGCCTTCAGT	1189	False	NA	31	True	TTTAAA	-18	NA	7765595	7773106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUSG00000031158.12_7765596_7773106_2	chrX	+	978	5	NIC	ENSMUSG00000031158.12	novel	2381	6	NA	NA	0	-103	intron_retention	FALSE	canonical	3	843	junction_3	49.2290564605904	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTCTGCCTTCAGT	1189	False	NA	31	True	TTTAAA	-18	NA	7765595	7773106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772631_7772726
ENSMUSG00000031158.12_7765596_7773106_3	chrX	+	797	5	NIC	ENSMUSG00000031158.12	novel	2381	6	NA	NA	0	-103	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	379.892748022386	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTCTGCCTTCAGT	1189	False	NA	31	True	TTTAAA	-18	NA	7765595	7773106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_7765709_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUSG00000031158.12_7765596_7773909_1	chrX	+	1700	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	681	0	-681	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAGCAAAAGCTGGG	1189	False	NA	NA	False	NA	NA	NA	7765595	7773909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUSG00000031160.5_7790515_7794731_1	chrX	-	962	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	115	0	115	0	multi-exon	FALSE	canonical	3	21	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794731	7790514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7791453_7794707
ENSMUSG00000031167.17_8008598_8010839_1	chrX	-	902	5	ISM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	1123	-2	1079	0	3prime_fragment	FALSE	canonical	3	391	junction_1	331.632609222917	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	7658	False	NA	-7	True	ATTAAA	-25	NA	8010839	8008597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811
ENSMUSG00000031167.17_8008607_8010111_1	chrX	-	786	4	ISM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	2008	9	-954	0	3prime_fragment	FALSE	canonical	3	764	junction_2	241.173519828912	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	8386	False	NA	-16	True	ATTAAA	-16	NA	8010111	8008606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086
ENSMUSG00000031167.17_8008711_8011936_1	chrX	-	1046	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	26	111	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6561	False	NA	NA	False	ATTAAA	-38	NA	8011936	8008710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031168.15_8051570_8059137_1	chrX	-	1235	4	NIC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	780	junction_2	7.25718035235908	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	-5	True	AATAAA	-17	NA	8059137	8051569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_8052073_8052882_8053159_8056317_8056676_8059039
ENSMUSG00000031168.15_8051570_8059137_2	chrX	-	1127	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	614	2	0	0	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	-5	True	AATAAA	-17	NA	8059137	8051569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ENSMUSG00000031171.12_8106659_8118609_1	chrX	-	1637	13	FSM	ENSMUSG00000031171.12	ENSMUST00000033513.10	3425	13	36	1752	-7	0	multi-exon	FALSE	canonical	3	43	junction_4	72.5114933418604	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118609	8106658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUSG00000031174.18_10024455_10082972_1	chrX	-	2739	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	187	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082972	10024454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031174.18_10024455_10082972_2	chrX	-	2708	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	187	-156	0	0	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082972	10024454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031197.12_74557923_74578336_1	chrX	+	1365	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	18	212	0	-212	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTAAGCTTTTTTATT	NA	False	NA	NA	False	TATAAA	-18	NA	74557922	74578336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUSG00000031198.5_74426005_74438360_1	chrX	+	857	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	1705	0	426	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTATCTTGGTGTATG	537	False	NA	NA	False	AATACA	-23	NA	74426004	74438360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUSG00000031201.18_74460303_74493751_1	chrX	+	923	10	FSM	ENSMUSG00000031201.18	ENSMUST00000114074.8	2473	10	-13	1563	0	-587	multi-exon	FALSE	canonical	1	349	junction_4	251.832836972818	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATATTTTTTTTCAATTT	NA	False	NA	NA	False	AATAAA	-25	NA	74460302	74493751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
ENSMUSG00000031201.18_74460303_74494345_1	chrX	+	979	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	69	3262	0	7	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTGGAGGGACTACAT	NA	False	NA	NA	False	NA	NA	NA	74460302	74494345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74494836_1	chrX	+	1470	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	69	2771	0	6	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTAACATTGTCACTAC	NA	False	NA	NA	False	NA	NA	NA	74460302	74494836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74499308_1	chrX	+	1074	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1701	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_10	385.15219069869	226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGTCATGGTATTTT	NA	False	NA	15	True	NA	NA	NA	74460302	74499308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
ENSMUSG00000031221.8_99537961_99559610_1	chrX	+	1333	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	64	121	0	-121	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	29	True	AATAAA	-32	NA	99537960	99559610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUSG00000031226.14_104123381_104127093_1	chrX	+	920	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	1699	0	327	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGACTGATCTTAGAAA	NA	False	NA	23	True	AATAAA	-20	NA	104123380	104127093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
ENSMUSG00000031226.14_104123381_104160696_1	chrX	+	712	6	NNC	ENSMUSG00000031226.14	novel	1239	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	559.074950252647	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123380	104160696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104160432
ENSMUSG00000031231.5_105059322_105065564_1	chrX	+	493	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	16	492	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	3382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCTTTGTTTTTTTC	NA	False	NA	12	True	AATAAA	-24	NA	105059321	105065564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_105059477_105063184_105063310_105065351
ENSMUSG00000031232.18_105015002_105055409_1	chrX	-	1116	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	96	3312	-17	-918	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCAACTCACATATTTT	NA	False	NA	NA	False	AATAAA	-19	NA	105055409	105015001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ENSMUSG00000031256.12_132960083_132985210_2	chrX	+	2007	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	137	2358	0	-1585	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATACATAATCCTTTT	NA	False	NA	30	True	AATAAA	-30	NA	132960082	132985210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ENSMUSG00000031266.8_133490513_133501754_1	chrX	-	1437	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	1578	0	-1578	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTTTCAACATAGGCT	NA	False	NA	-15	True	AATAAA	-27	NA	133501754	133490512	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
ENSMUSG00000031299.11_158906637_158921357_1	chrX	-	1364	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	52	1432	-5	-1432	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	-10	True	AGTAAA	-18	NA	158921357	158906636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031311.18_100473341_100492197_1	chrX	+	2382	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	180	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	2052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_100473341_100492197_2	chrX	+	2409	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	2055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031328.17_73267069_73271574_1	chrX	-	1886	9	ISM	ENSMUSG00000031328.17	ENSMUST00000144429.8	8233	47	18430	2	0	0	3prime_fragment	FALSE	canonical	3	605	junction_7	64.6634315127182	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTAGCTTTCATGGAAGG	NA	False	NA	-5	True	AATAAA	-23	NA	73271574	73267068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457
ENSMUSG00000031333.8_103327502_103457452_1	chrX	-	2428	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	3239	0	-3239	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGTTGGATTTTTATGT	9861	False	NA	3	True	ATTAAA	-16	NA	103457452	103327501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
ENSMUSG00000031337.17_70258665_70352410_1	chrX	+	2604	14	ISM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	53	6491	0	-1507	5prime_fragment	FALSE	canonical	3	300	junction_1	26.1022114731105	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGGAACCTTGTTGAT	NA	False	NA	NA	False	ATTAAA	-24	NA	70258664	70352410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305
ENSMUSG00000031347.13_71957310_71961940_1	chrX	-	1037	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	77	172	-50	0	multi-exon	FALSE	canonical	3	590	junction_4	36.4862987983161	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71961940	71957309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUSG00000031349.5_71962163_72001738_1	chrX	+	1786	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	382	0	-382	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGACTCTGGTGTGGT	NA	False	NA	14	True	CATAAA	-14	NA	71962162	72001738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUSG00000031353.14_161543398_161561791_1	chrX	+	1947	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	297	0	39	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	4386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	7	True	AATAAA	-14	NA	161543397	161561791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUSG00000031357.4_161639844_161671443_1	chrX	-	2296	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	-209	0	209	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGTACGTATTTATA	NA	False	NA	-3	True	AATAAA	-21	NA	161671443	161639843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ENSMUSG00000031360.15_161684601_161814333_1	chrX	+	2209	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-27	1171	0	18	multi-exon	TRUE	canonical	2	133	junction_1	30.7828415409191	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTGTGTTTTCTCCA	NA	False	NA	29	True	ATTAAA	-35	NA	161684600	161814333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ENSMUSG00000031362.18_72277685_72286736_1	chrX	-	1184	9	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	119.637407924946	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286581
ENSMUSG00000031362.18_72277685_72286736_2	chrX	-	1244	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	110.415125775412	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286557
ENSMUSG00000031370.13_162735609_162741158_1	chrX	-	1482	4	FSM	ENSMUSG00000031370.13	ENSMUST00000139166.2	504	4	0	-978	0	978	multi-exon	FALSE	canonical	3	635	junction_1	90.1566537878499	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741158	162735608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911
ENSMUSG00000031370.13_162735609_162741608_1	chrX	-	1547	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-60	-1027	-14	978	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741608	162735608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
ENSMUSG00000031370.13_162735609_162741659_1	chrX	-	1537	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-2	978	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741659	162735608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ENSMUSG00000031370.13_162735609_162741659_2	chrX	-	1705	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	-65	2227	-2	978	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741659	162735608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_162735921_162741158_1	chrX	-	1170	4	FSM	ENSMUSG00000031370.13	ENSMUST00000139166.2	504	4	0	-666	0	666	multi-exon	FALSE	canonical	3	635	junction_1	90.1566537878499	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741158	162735920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911
ENSMUSG00000031370.13_162735921_162741608_1	chrX	-	1235	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-60	-715	-14	666	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741608	162735920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
ENSMUSG00000031370.13_162735921_162741608_2	chrX	-	1342	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	-14	2539	-14	666	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741608	162735920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_162735921_162741659_1	chrX	-	1225	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-2	666	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741659	162735920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ENSMUSG00000031379.14_163052543_163155783_1	chrX	+	1130	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	0	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052542	163155783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163155783_2	chrX	+	1214	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	0	-224	combination_of_known_splicesites	FALSE	canonical	3	32	junction_6	81.4048524352203	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052542	163155783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163155905_1	chrX	+	1381	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	116	102	0	-102	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCCTGATACATGCAAA	NA	False	NA	NA	False	AATAAA	-25	NA	163052542	163155905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163156009_1	chrX	+	1485	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	116	-2	0	2	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTTTTTTATATGGG	NA	False	NA	NA	False	TATAAA	-17	NA	163052542	163156009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052569_163155783_1	chrX	+	1233	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	142	224	0	-224	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052568	163155783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031383.9_72683149_72687120_1	chrX	+	2598	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	124	0	124	0	multi-exon	FALSE	canonical	3	583	junction_1	9.62635271879577	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683148	72687120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
ENSMUSG00000031387.15_72965728_72974375_1	chrX	-	1184	9	NIC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_7	662.694499750828	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974375	72965727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72974013_72974124_72974319
ENSMUSG00000031387.15_72965728_72974375_2	chrX	-	1260	10	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	84	junction_7	628.476602194682	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974375	72965727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973792_72973869_72974013_72974124_72974319
ENSMUSG00000031387.15_72965728_72974375_4	chrX	-	1260	10	NIC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_8	580.11297324607	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974375	72965727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72974013_72974124_72974319
ENSMUSG00000031387.15_72965728_72974456_1	chrX	-	1310	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_10	590.512192930849	645	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974456	72965727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974426
ENSMUSG00000031400.11_73453089_73472486_1	chrX	-	2338	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	314	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472486	73453088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUSG00000031402.13_74153880_74174450_1	chrX	-	1812	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	172	541	0	374	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTGACCCTGTAACTCCA	NA	False	NA	-6	True	AATAAA	-21	NA	74174450	74153879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ENSMUSG00000031402.13_74153880_74174597_1	chrX	-	1959	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	25	541	-5	374	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTGACCCTGTAACTCCA	NA	False	NA	-6	True	AATAAA	-21	NA	74174597	74153879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ENSMUSG00000031403.15_74139659_74152327_1	chrX	+	1549	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	1056	0	445	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAAGTAAAAGTGG	NA	False	NA	NA	False	AAAAAG	-6	NA	74139658	74152327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74139659_74153185_1	chrX	+	2407	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	198	0	-198	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74139658	74153185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74139659_74153383_1	chrX	+	2687	16	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	815.250756243474	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139658	74153383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74139659_74153383_2	chrX	+	2605	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139658	74153383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153185_1	chrX	+	1497	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1812	-198	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74147742	74153185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153185_2	chrX	+	1636	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8283	198	-1812	-198	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74147742	74153185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153383_1	chrX	+	1834	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8283	0	-1812	0	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147742	74153383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153383_2	chrX	+	1695	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1812	0	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147742	74153383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031429.15_139849689_139857438_1	chrX	-	840	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	39	511	0	-511	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTGTGGCTGTCCTGTC	NA	False	NA	-1	True	ATTAAA	-21	NA	139857438	139849688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031429.15_139849689_139857438_2	chrX	-	919	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	511	0	-511	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTGTGGCTGTCCTGTC	NA	False	NA	-1	True	ATTAAA	-21	NA	139857438	139849688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031432.4_139357362_139376055_1	chrX	+	1131	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	834	0	-834	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGTATTGGTGAG	NA	False	NA	21	True	AATAAA	-17	NA	139357361	139376055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUSG00000031446.15_13155740_13197940_1	chr8	+	3609	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	119	0	0	0	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155739	13197940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
ENSMUSG00000031447.8_13222595_13225338_1	chr8	+	1224	4	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	13434	0	-586	0	3prime_fragment	FALSE	canonical	3	2592	junction_1	216.043719855239	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACGTGTCCTTCTGTGAC	NA	False	NA	21	True	AATAAA	-22	NA	13222594	13225338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_13222661_13223626_13223694_13223779_13223951_13224418
ENSMUSG00000031458.9_13934474_13940268_1	chr8	-	1113	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	-320	0	320	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATGAGTACACTGTTG	NA	False	NA	NA	False	TTTAAA	-21	NA	13940268	13934473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUSG00000031467.11_18896550_18932068_1	chr8	+	1217	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	255	1369	255	-1369	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTTTTGTTTTGTTT	NA	False	NA	14	True	ATTAAA	-18	NA	18896549	18932068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
ENSMUSG00000031479.10_22682825_22708648_1	chr8	+	1363	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	2211	0	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGGTCTCAGAAACT	NA	False	NA	22	True	TATAAA	-17	NA	22682824	22708648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUSG00000031483.9_27513894_27529164_1	chr8	+	3579	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	67	1192	0	-1192	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGTTTGTACTTCCAT	NA	False	NA	10	True	TATAAA	-16	NA	27513893	27529164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031483.9_27513894_27529451_1	chr8	+	3866	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	67	905	0	-905	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAGGTAAAATTTACC	NA	False	NA	21	True	AATAAA	-18	NA	27513893	27529451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031485.16_27532626_27544596_1	chr8	+	1996	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	43	1564	0	1	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTGATGAGTGAATT	NA	False	NA	14	True	ATTAAA	-16	NA	27532625	27544596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ENSMUSG00000031485.16_27532626_27546160_1	chr8	+	2534	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	86.0112637972493	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532625	27546160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544060_27545085
ENSMUSG00000031487.6_27613854_27618660_1	chr8	-	1389	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	48	462	0	379	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTTGGCTTTTCTTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	27618660	27613853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ENSMUSG00000031489.16_27715804_27717610_1	chr8	-	1088	3	FSM	ENSMUSG00000031489.16	ENSMUST00000121838.2	1864	3	1001	-225	912	0	multi-exon	FALSE	canonical	3	73	junction_1	27.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717610	27715803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_27716498_27716753_27716822_27717284
ENSMUSG00000031489.16_27715804_27717610_2	chr8	-	1001	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	912	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	38.5	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717610	27715803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_27716411_27716753_27716822_27717284
ENSMUSG00000031490.7_27750357_27765543_1	chr8	+	838	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	1159	0	17	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	7504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	17	True	AATAAA	-17	NA	27750356	27765543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUSG00000031490.7_27750357_27765606_1	chr8	+	901	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	1096	0	80	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	7673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCCAGTGTTTATG	NA	False	NA	-45	True	NA	NA	NA	27750356	27765606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUSG00000031509.11_11705479_11716141_1	chr8	-	775	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3537	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	59	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATCTGATAGGGCTGTT	NA	False	NA	-9	True	AATAAA	-21	NA	11716141	11705478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
ENSMUSG00000031513.9_34602726_34613937_1	chr8	-	2629	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	0	250	0	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGCTTGTGGGTGTTTT	9036	False	NA	-4	True	AATAAA	-16	NA	34613937	34602725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031513.9_34604445_34613937_1	chr8	-	910	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	1719	250	-1719	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTCATTCAGTCAG	9036	False	NA	1	True	ATTAAA	-18	NA	34613937	34604444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031513.9_34604687_34613937_1	chr8	-	668	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	1961	250	-1961	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCTGGTTTCCCACTT	9036	False	NA	-3	True	ATTAAA	-22	NA	34613937	34604686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031516.12_34557574_34575617_1	chr8	-	919	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	333	-3	0	0	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	0	True	AATAAA	-31	NA	34575617	34557573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ENSMUSG00000031533.5_22901414_22919490_1	chr8	+	1287	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	37	191	0	-191	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCCTGTGTTGA	NA	False	NA	9	True	ATTAAA	-18	NA	22901413	22919490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUSG00000031546.7_23716842_23727675_1	chr8	-	1139	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	210	0	-210	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTACTACTTACTGAG	NA	False	NA	-1	True	AATAAA	-26	NA	23727675	23716841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUSG00000031557.17_25530856_25591787_1	chr8	-	3249	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	214	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACTTTTGTGTGTTT	5825	False	NA	20	True	NA	NA	NA	25591787	25530855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ENSMUSG00000031562.16_48563200_48591626_1	chr8	+	882	5	ISM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	3	3072	0	0	5prime_fragment	FALSE	canonical	3	18	junction_4	162.647625251646	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563199	48591626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213
ENSMUSG00000031562.16_48563200_48591626_2	chr8	+	1686	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	-900	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563199	48591626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
ENSMUSG00000031562.16_48563200_48594700_1	chr8	+	1867	7	NNC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	140.865676759418	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563199	48594700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377_48594014_48594035
ENSMUSG00000031562.16_48563200_48594700_3	chr8	+	1889	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	207	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563199	48594700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_48563460_48594700_1	chr8	+	1875	7	NNC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	214	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	167.429587190158	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563459	48594700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377_48594014_48594035
ENSMUSG00000031562.16_48563466_48594700_1	chr8	+	1891	6	NIC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	220	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563465	48594700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031575.19_26306904_26330790_1	chr8	-	2402	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	25	880	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	2094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26330790	26306903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ENSMUSG00000031575.19_26307348_26337722_1	chr8	-	1893	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	444	0	-334	multi-exon	FALSE	canonical	3	3119	junction_12	186.058007680998	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCTGCAGTACACTTT	NA	False	NA	-4	True	TATAAA	-19	NA	26337722	26307347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUSG00000031577.11_31640343_31650117_1	chr8	+	2168	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	0	965	0	-965	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCTCTTCTATTTGT	NA	False	NA	6	True	ATTAAA	-17	NA	31640342	31650117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
ENSMUSG00000031578.6_31649625_31658792_1	chr8	-	1768	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	134	0	-134	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGCTCTAGCTCTACAT	NA	False	NA	-20	True	AATAAA	-15	NA	31658792	31649624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031585.14_34221861_34266993_1	chr8	+	1435	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	199	0	187	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	5025	False	NA	18	True	AATAAA	-15	NA	34221860	34266993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_34222070_34266847_1	chr8	+	1221	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	345	0	41	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCTGCTATTTAT	5234	False	NA	2	True	NA	NA	NA	34222069	34266847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_34222070_34266993_1	chr8	+	1367	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	199	0	187	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	5234	False	NA	18	True	AATAAA	-15	NA	34222069	34266993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031591.15_41793698_41827686_1	chr8	-	2185	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	124	464	-14	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCAGTCATGCATGCTG	7625	False	NA	-21	True	AATAAA	-18	NA	41827686	41793697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031591.15_41793698_41827686_2	chr8	-	2179	14	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	364.031811471626	1040	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCAGTCATGCATGCTG	7625	False	NA	-21	True	AATAAA	-18	NA	41827686	41793697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807949_41813289_41813337_41827546
ENSMUSG00000031591.15_41793854_41827686_1	chr8	-	2029	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	124	620	-14	-156	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATGTATTTATGAAAACT	7625	False	NA	NA	False	AATATA	-21	NA	41827686	41793853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031600.12_40964824_40999587_1	chr8	+	1791	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	0	4211	0	3	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAGCTAATTTTTAATAT	NA	False	NA	16	True	ATTAAA	-16	NA	40964823	40999587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
ENSMUSG00000031604.11_65171173_65186615_1	chr8	-	1557	4	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	338.098933581413	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186615	65171172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_65172216_65173375_65173531_65180657_65180943_65186541
ENSMUSG00000031604.11_65171173_65186615_2	chr8	-	1684	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	28	junction_3	300.648777645944	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186615	65171172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180657_65180943_65186541
ENSMUSG00000031604.11_65171173_65186615_3	chr8	-	1833	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	211	0	0	0	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186615	65171172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUSG00000031628.10_47070477_47092724_1	chr8	+	2445	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	47	-972	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070476	47092724	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031628.10_47070477_47092724_2	chr8	+	2450	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	151	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070476	47092724	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031629.15_47005104_47031549_1	chr8	+	1397	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	41	1493	0	136	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGAAGGCATAGCCATAT	NA	False	NA	NA	False	ACTAAA	-26	NA	47005103	47031549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_47005104_47031754_1	chr8	+	1602	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	41	1288	0	341	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTGATAGAACGGTTGC	NA	False	NA	10	True	AATAAA	-16	NA	47005103	47031754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031633.5_46660210_46664067_1	chr8	-	1295	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	376	0	-376	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	2887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	46664067	46660209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ENSMUSG00000031633.5_46660376_46664067_1	chr8	-	1129	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	542	0	-542	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	0	True	GATAAA	-32	NA	46664067	46660375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ENSMUSG00000031633.5_46660493_46664067_1	chr8	-	1012	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	659	0	514	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACAAGTTCACAGATCC	NA	False	NA	41	True	NA	NA	NA	46664067	46660492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ENSMUSG00000031641.15_61940768_61956518_1	chr8	+	1099	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	0	3210	0	95	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTTGCTAAGAGTATTT	2566	False	NA	16	True	ATTAAA	-16	NA	61940767	61956518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
ENSMUSG00000031651.6_43582844_43633311_1	chr8	-	1484	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	54.6308576927445	126	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43618053_43618097_43633233
ENSMUSG00000031651.6_43582844_43633311_2	chr8	-	1441	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	127	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
ENSMUSG00000031651.6_43582844_43633311_3	chr8	-	1778	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ENSMUSG00000031660.14_89058939_89088642_1	chr8	-	2193	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	180	1252	0	476	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCGCTGGTGTGTCAGCT	NA	False	NA	-5	True	AATAAA	-20	NA	89088642	89058938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ENSMUSG00000031667.17_91850516_91860651_1	chr8	-	1756	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	4	319	0	-319	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGAAAGTAATGCTCCT	NA	False	NA	-10	True	AATAAA	-26	NA	91860651	91850515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUSG00000031667.17_91850516_91860651_2	chr8	-	1837	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	-26	389	0	-319	multi-exon	FALSE	canonical	3	60	junction_9	146.200581394193	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGAAAGTAATGCTCCT	NA	False	NA	-10	True	AATAAA	-26	NA	91860651	91850515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
ENSMUSG00000031672.9_96590762_96615029_1	chr8	-	2384	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	146	0	-9	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615029	96590761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031672.9_96595922_96615020_1	chr8	-	1284	8	ISM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	155	5160	0	178	5prime_fragment	FALSE	canonical	3	549	junction_7	40.4772548879652	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGTTCAGTTGAAATAC	NA	False	NA	NA	False	AATAAA	-17	NA	96615020	96595921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031683.17_79533195_79547769_1	chr8	-	1992	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	115	0	-115	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGTCTCCTCGTGGTCT	NA	False	NA	-5	True	NA	NA	NA	79547769	79533194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUSG00000031683.17_79533195_79547769_2	chr8	-	2091	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	1701	0	-115	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGTCTCCTCGTGGTCT	NA	False	NA	-5	True	NA	NA	NA	79547769	79533194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ENSMUSG00000031683.17_79534666_79547769_1	chr8	-	521	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	1586	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTATGTCTCAGTCTTT	NA	False	NA	-7	True	NA	NA	NA	79547769	79534665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUSG00000031683.17_79534666_79547769_2	chr8	-	620	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	3172	0	0	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTATGTCTCAGTCTTT	NA	False	NA	-7	True	NA	NA	NA	79547769	79534665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ENSMUSG00000031684.12_79235997_79458406_1	chr8	+	1369	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	2226	0	139	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGCCTTACGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	79235996	79458406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
ENSMUSG00000031696.10_85987021_86026146_1	chr8	-	3189	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	285	0	-48	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	86026146	85987020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
ENSMUSG00000031697.13_86026261_86034699_1	chr8	+	1445	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	-159	1	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026260	86034699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_2	chr8	+	1024	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	234	208	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_3	chr8	+	990	6	NIC	ENSMUSG00000031697.13	novel	1041	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031701.7_86264892_86281990_1	chr8	-	2306	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	-17	630	-17	-630	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTCTCATTAAGTTGA	NA	False	NA	0	True	ATTAAA	-15	NA	86281990	86264891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031701.7_86265258_86281973_1	chr8	-	1923	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	996	0	-996	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	86281973	86265257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031711.8_83490250_83500774_1	chr8	-	1569	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	-31	-777	0	0	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
ENSMUSG00000031714.10_81491069_81585876_1	chr8	-	3958	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21249	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585876	81491068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
ENSMUSG00000031729.7_110397957_110419912_1	chr8	-	2279	9	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	212.348144270205	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419912	110397956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_110399274_110403385_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031730.19_110320109_110335013_1	chr8	-	1797	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	242	0	-15	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335013	110320108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUSG00000031730.19_110320379_110335013_1	chr8	-	1527	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	242	270	-15	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTAAATCCCATCCCTT	NA	False	NA	-9	True	AATAAA	-13	NA	110335013	110320378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUSG00000031754.11_94746033_94763642_1	chr8	-	1084	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	17	3909	-8	0	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	1486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGGATCCTTTTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	94763642	94746032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
ENSMUSG00000031758.11_117301139_117399915_1	chr8	-	2273	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59815	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	68	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	NA	False	NA	65	True	NA	NA	NA	117399915	117301138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
ENSMUSG00000031765.9_94905869_94906955_1	chr8	+	390	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	159	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	7561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905868	94906955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94905967_94906450_94906517_94906729
ENSMUSG00000031774.9_95301568_95328320_1	chr8	-	1628	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	0	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	-4	True	AATAAA	-23	NA	95328320	95301567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
ENSMUSG00000031774.9_95301568_95328320_2	chr8	-	1669	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	-4	True	AATAAA	-23	NA	95328320	95301567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
ENSMUSG00000031774.9_95301568_95328320_3	chr8	-	1766	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	305	802	0	717	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	-4	True	AATAAA	-23	NA	95328320	95301567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_95301568_95328320_4	chr8	-	1669	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	-4	True	AATAAA	-23	NA	95328320	95301567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
ENSMUSG00000031776.18_95393351_95401053_1	chr8	+	1940	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	123	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393350	95401053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUSG00000031781.15_95549189_95559330_1	chr8	-	1463	8	NNC	ENSMUSG00000031781.15	novel	1807	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_7	579.966114421826	1545	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95559330	95549188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559176
ENSMUSG00000031781.15_95549189_95564915_1	chr8	-	1531	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	71	2757	-22	0	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	1543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564915	95549188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ENSMUSG00000031783.11_95584146_95590535_1	chr8	+	1177	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	68	335	0	166	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	2160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTCATGCGTCATCGT	NA	False	NA	23	True	AATAAA	-14	NA	95584145	95590535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUSG00000031787.9_95807814_95825687_1	chr8	+	2625	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	0	1152	0	-1152	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCTTATGAGAGGAATAT	809	False	NA	14	True	ATTAAA	-18	NA	95807813	95825687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
ENSMUSG00000031796.8_96146877_96161430_1	chr8	-	1148	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	28	-153	-6	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161430	96146876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
ENSMUSG00000031799.11_72889777_72906986_1	chr8	+	2145	8	NNC	ENSMUSG00000031799.11	novel	1803	9	NA	NA	125	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	253.461424831376	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889776	72906986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_72889989_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUSG00000031803.9_72143856_72154433_1	chr8	-	2599	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	456	0	-456	multi-exon	FALSE	canonical	3	105	junction_2	27	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	8521	False	NA	-5	True	NA	NA	NA	72154433	72143855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_72145800_72145960_72146544_72154361
ENSMUSG00000031803.9_72144363_72154433_1	chr8	-	2092	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	963	0	-963	multi-exon	FALSE	canonical	3	105	junction_2	27	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGTAATGTTACTTTTAG	8521	False	NA	-19	True	NA	NA	NA	72154433	72144362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_72145800_72145960_72146544_72154361
ENSMUSG00000031812.17_122317100_122323734_1	chr8	+	767	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	0	1765	0	0	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTTGCATCCTAAGTT	9845	False	NA	-24	True	AATAAA	-2	NA	122317099	122323734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUSG00000031812.17_122317216_122324785_1	chr8	+	1702	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	116	714	0	0	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGTGATGTCTCATTG	9961	False	NA	16	True	AATAAA	-16	NA	122317215	122324785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUSG00000031819.14_121384572_121394822_1	chr8	-	985	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	38	3919	4	0	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTGTACACGGTGTACC	NA	False	NA	-22	True	ATTAAA	-29	NA	121394822	121384571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
ENSMUSG00000031821.12_121308006_121315804_1	chr8	-	912	4	NIC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-31	277	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	522.247918989524	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTAGAACGGGTTTA	NA	False	NA	88	True	AATACA	-15	NA	121315804	121308005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_121308551_121308820_121308948_121312831_121312932_121315664
ENSMUSG00000031821.12_121308006_121315804_2	chr8	-	1113	4	FSM	ENSMUSG00000031821.12	ENSMUST00000146526.8	3662	4	-85	2634	-31	277	multi-exon	FALSE	canonical	3	1091	junction_3	35.3647658929996	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTAGAACGGGTTTA	NA	False	NA	88	True	AATACA	-15	NA	121315804	121308005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463
ENSMUSG00000031821.12_121308006_121315804_3	chr8	-	1027	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	239	2634	-31	277	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTAGAACGGGTTTA	NA	False	NA	88	True	AATACA	-15	NA	121315804	121308005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ENSMUSG00000031843.3_118518384_118528682_1	chr8	-	1076	5	NNC	ENSMUSG00000031843.3	novel	1068	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_4	285.949624059903	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528582
ENSMUSG00000031848.16_71126029_71131402_1	chr8	+	794	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	131	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	3110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
ENSMUSG00000031851.15_126460972_126474851_2	chr8	+	1002	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	30	123	0	78	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGGTTCTCTTCAATTA	NA	False	NA	32	True	NA	NA	NA	126460971	126474851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031851.15_126460972_126474974_1	chr8	+	1120	5	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	25.0499500997507	116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460971	126474974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031864.17_69246626_69280313_1	chr8	+	2407	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	45	1749	0	160	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	30	True	AATAAA	-32	NA	69246625	69280313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ENSMUSG00000031879.15_105366480_105368342_1	chr8	-	659	5	NNC	ENSMUSG00000031879.15	novel	918	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	327.680484618782	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368342	105366479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368023_105368174
ENSMUSG00000031885.15_105897577_105944621_1	chr8	+	2643	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	256	-8	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	4017	False	NA	82	True	ATTAAA	-22	NA	105897576	105944621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUSG00000031885.15_105897577_105944621_2	chr8	+	2612	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	271	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	4017	False	NA	82	True	ATTAAA	-22	NA	105897576	105944621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
ENSMUSG00000031887.14_105985202_105991221_1	chr8	-	1385	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	20	284	-8	-284	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGGAGATGCTGAGGTC	525	False	NA	-7	True	AATAAA	-19	NA	105991221	105985201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
ENSMUSG00000031897.10_106662368_106664724_1	chr8	-	962	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	352	-3	0	0	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106664724	106662367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
ENSMUSG00000031904.6_106895518_106923379_1	chr8	+	1762	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	29	1959	0	-760	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTCAGGGCCAATGCT	1861	False	NA	12	True	ATTAAA	-27	NA	106895517	106923379	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031904.6_106895518_106924655_1	chr8	+	3038	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	29	683	0	178	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGGAATGTTCTACA	1861	False	NA	13	True	AATAAA	-28	NA	106895517	106924655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031913.10_107757854_107772097_1	chr8	+	1888	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	290	0	-290	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAGGAGTGGGAGCTGC	NA	False	NA	11	True	AATAAA	-20	NA	107757853	107772097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ENSMUSG00000031916.18_107772921_107774979_1	chr8	-	1270	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	267	-231	267	231	multi-exon	FALSE	canonical	3	275	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107774979	107772920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_107773904_107774692
ENSMUSG00000031916.18_107772921_107775246_1	chr8	-	1537	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	0	-231	0	231	multi-exon	FALSE	canonical	3	275	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107775246	107772920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_107773904_107774692
ENSMUSG00000031916.18_107775341_107783321_1	chr8	-	2056	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	0	2420	0	-2414	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTCGCCTGCTGTTCCC	NA	False	NA	-6	True	AATAAA	-14	NA	107783321	107775340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ENSMUSG00000031917.13_107783538_107785662_1	chr8	+	1199	4	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	364	intron_retention	FALSE	canonical	3	714	junction_3	58.9594964549581	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783537	107785662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_107783623_107783724_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107785662_2	chr8	+	1106	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	29	1901	0	364	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783537	107785662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107787563_1	chr8	+	1915	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783537	107787563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
ENSMUSG00000031922.13_13719091_13738290_1	chr9	-	2409	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	113	1	-3	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTAACAAAGGCTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	13738290	13719090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031922.13_13719480_13738349_1	chr9	-	2079	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	54	390	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTTTTGCTTTGGTA	NA	False	NA	-1	True	ATTAAA	-18	NA	13738349	13719479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031922.13_13719651_13738349_2	chr9	-	1908	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	54	561	0	-171	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTTTTTTAAACTA	NA	False	NA	0	True	NA	NA	NA	13738349	13719650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031924.5_107877272_107910445_1	chr8	+	658	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	3658	0	-2177	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGTACGACCAGAGT	NA	False	NA	9	True	NA	NA	NA	107877271	107910445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031924.5_107877272_107910733_1	chr8	+	946	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	3370	0	-1889	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTTTGTCATTCATCA	NA	False	NA	38	True	AGTAAA	-20	NA	107877271	107910733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031924.5_107877272_107912622_1	chr8	+	2835	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	1481	0	0	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCGTTTTTTCTATTT	NA	False	NA	55	True	AGTAAA	-11	NA	107877271	107912622	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031928.16_14695972_14745260_1	chr9	+	2582	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	22	682	0	-682	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	17	True	NA	NA	NA	14695971	14745260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031928.16_14695998_14745260_1	chr9	+	2606	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	0	-682	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	17	True	NA	NA	NA	14695997	14745260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031930.12_108162997_108283845_1	chr8	+	2932	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	0	1382	0	0	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	11	True	AATAAA	-22	NA	108162996	108283845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
ENSMUSG00000031931.5_14691083_14695828_1	chr9	-	2245	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	-6	-1202	-6	0	multi-exon	FALSE	canonical	3	83	junction_2	53	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695828	14691082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_14692908_14693910_14694259_14695756
ENSMUSG00000031931.5_14691083_14695828_2	chr9	-	2186	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	324	169	-6	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695828	14691082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUSG00000031935.10_15173165_15191200_1	chr9	-	2419	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	27	1518	-1	138	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAAGTATTTTGTGA	NA	False	NA	-4	True	CATAAA	-18	NA	15191200	15173164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
ENSMUSG00000031939.17_15217556_15223094_1	chr9	+	1127	7	NIC	ENSMUSG00000031939.17	novel	1005	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	217.881275010038	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9118	False	NA	NA	False	AATAAA	-17	NA	15217555	15223094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_1	chr9	+	1316	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-4	-307	0	1	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_2	chr9	+	1434	7	NIC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_3	chr9	+	1194	7	NIC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	198.555407884046	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
ENSMUSG00000031939.17_15217556_15228274_1	chr9	+	1342	13	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	171.959055204042	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9118	False	NA	7	True	NA	NA	NA	15217555	15228274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000031950.8_112667335_112679211_1	chr8	+	644	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	1033	0	-163	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTTCAGTTTTCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	112667334	112679211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679547_1	chr8	+	980	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	697	0	173	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	2697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679864_1	chr8	+	1297	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	380	0	-380	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	2823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTGGTGTTTTGCCTGC	NA	False	NA	10	True	AATATA	-15	NA	112667334	112679864	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUSG00000031960.15_111760511_111782201_1	chr8	+	3323	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2095	combination_of_known_junctions	FALSE	canonical	2	881	junction_1	574.494062197339	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760510	111782201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_111760548_111782201_1	chr8	+	3322	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2095	combination_of_known_junctions	FALSE	canonical	2	137	junction_1	723.09724622626	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760547	111782201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_111760548_111782201_2	chr8	+	3641	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	14	2095	0	-2095	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760547	111782201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031967.16_124204642_124228917_1	chr8	+	2489	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	0	1738	0	563	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACGTCTCAGATAAGACC	7495	False	NA	16	True	ATTAAA	-19	NA	124204641	124228917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
ENSMUSG00000031969.17_26886260_26910815_2	chr9	-	2009	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	47	829	-11	412	multi-exon	FALSE	canonical	0	0	junction_7	75.0053331437172	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTAAGGCAGTTTGT	9278	False	NA	3	True	ATTAAA	-31	NA	26910815	26886259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031969.17_26886450_26910815_1	chr9	-	1847	11	NIC	ENSMUSG00000031969.17	novel	2885	11	NA	NA	-11	222	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	90.14565990662	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGATTTTTTATTTGG	9278	False	NA	-12	True	AATAAA	-27	NA	26910815	26886449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903585_26910689
ENSMUSG00000031969.17_26886450_26910815_2	chr9	-	1819	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	47	1019	-11	222	multi-exon	FALSE	canonical	0	0	junction_7	75.0053331437172	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGATTTTTTATTTGG	9278	False	NA	-12	True	AATAAA	-27	NA	26910815	26886449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031984.9_125563684_125589753_1	chr8	-	3692	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	150	junction_1	523.121595885347	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGCTGTTTTGCCTAC	NA	False	NA	NA	False	AATAAA	-26	NA	125589753	125563683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031984.9_125566094_125589753_1	chr8	-	1367	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	106	867	0	-867	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGACTGTTAAGTAGCA	NA	False	NA	-8	True	AATACA	-16	NA	125589753	125566093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031985.10_125589811_125616287_1	chr8	+	2436	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	39	509	0	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGGGCAGCAGAGCTC	5159	False	NA	11	True	AATAAA	-16	NA	125589810	125616287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031985.10_125589811_125616654_1	chr8	+	2803	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	39	142	0	-142	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAATCTGACACACTT	5159	False	NA	NA	False	AATAAA	-24	NA	125589810	125616654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031985.10_125613662_125616654_1	chr8	+	730	3	ISM	ENSMUSG00000031985.10	ENSMUST00000161628.2	908	6	3408	-367	-706	-142	3prime_fragment	FALSE	canonical	3	609	junction_2	13.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAATCTGACACACTT	NA	False	NA	NA	False	AATAAA	-24	NA	125613661	125616654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_125613686_125614496_125614559_125616010
ENSMUSG00000031985.10_125613662_125616796_1	chr8	+	872	3	ISM	ENSMUSG00000031985.10	ENSMUST00000161628.2	908	6	3408	-509	-706	0	3prime_fragment	FALSE	canonical	3	609	junction_2	13.5	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	NA	False	NA	34	True	AATAAA	-25	NA	125613661	125616796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_125613686_125614496_125614559_125616010
ENSMUSG00000031990.16_27008680_27032657_1	chr9	-	1917	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5189	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_8	47.0729155141255	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27032657	27008679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
ENSMUSG00000031990.16_27008680_27033510_1	chr9	-	2001	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4336	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033510	27008679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
ENSMUSG00000031996.18_31060853_31123111_1	chr9	-	1013	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	611.364202010553	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	-9	True	AATAAA	-19	NA	31123111	31060852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_31061318_31083285_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000032018.15_42166029_42175552_1	chr9	-	1649	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	0	3138	0	0	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	False	NA	-4	True	AATAAA	-29	NA	42175552	42166028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
ENSMUSG00000032040.16_35035708_35087289_1	chr9	-	1343	7	NNC	ENSMUSG00000032040.16	novel	1445	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	651	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGATGGTGTAGCCCA	NA	False	NA	-7	True	AATAAA	-18	NA	35087289	35035707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUSG00000032047.6_53493674_53521650_1	chr9	-	1521	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	32	1852	-20	113	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTTATTTTTTTGTA	NA	False	NA	-25	True	AATAAA	-14	NA	53521650	53493673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
ENSMUSG00000032051.10_51854805_51874856_1	chr9	-	686	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	-10	199	0	-137	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACCTATTTTTATAAT	1027	False	NA	NA	False	AATAAA	-20	NA	51874856	51854804	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUSG00000032058.15_50768266_50791894_1	chr9	+	2564	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	29	837	0	187	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTTGTGGTTCTACTGT	16	True	NA	NA	False	AAGAAA	-16	NA	50768265	50791894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUSG00000032058.15_50768266_50792547_1	chr9	+	3217	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	29	184	0	-184	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAAATGCTTTTAAGT	16	True	NA	14	True	ATTAAA	-20	NA	50768265	50792547	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUSG00000032065.7_50468119_50472613_1	chr9	-	1004	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	-3	-106	-3	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGGCTATTTTTTTA	6974	False	NA	NA	False	AATAAA	-15	NA	50472613	50468118	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
ENSMUSG00000032076.21_47699267_47741029_1	chr9	+	1311	8	ISM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	257758	20856	257596	-4717	internal_fragment	FALSE	canonical	3	173	junction_7	55.5356109323797	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGTGTATTTGTCTAC	1846	False	NA	NA	False	AATAAA	-30	NA	47699266	47741029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
ENSMUSG00000032078.18_46184491_46192902_1	chr9	+	1816	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	129	1039	0	120	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCTCTGCGTTCATGTC	NA	False	NA	14	True	ATTAAA	-21	NA	46184490	46192902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
ENSMUSG00000032092.6_44953844_44965313_1	chr9	+	2986	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	121	0	121	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953843	44965313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ENSMUSG00000032096.17_44653437_44679110_1	chr9	-	3464	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	576	-15	-576	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACTGGACTCTAAC	NA	False	NA	-17	True	AATAAA	-18	NA	44679110	44653436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032096.17_44654928_44679110_1	chr9	-	1973	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	2067	-15	-2067	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAGTCTTCCTTTATTTT	NA	False	NA	1	True	AGTAAA	-18	NA	44679110	44654927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032103.11_35470762_35478439_1	chr9	+	1847	3	ISM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	871	-5	0	5	3prime_fragment	FALSE	canonical	3	88	junction_2	8	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTCTTTTTCAAGGC	NA	False	NA	17	True	ATTAAA	-17	NA	35470761	35478439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_35470814_35476079_35477152_35477716
ENSMUSG00000032103.11_35470762_35478439_2	chr9	+	1755	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	6	258	0	5	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTCTTTTTCAAGGC	NA	False	NA	17	True	ATTAAA	-17	NA	35470761	35478439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
ENSMUSG00000032112.11_44315056_44318651_1	chr9	-	974	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	246	0	-3	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1719	False	NA	-8	True	AATAAA	-17	NA	44318651	44315055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUSG00000032113.17_36619935_36637897_1	chr9	-	3183	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	157	-16	-157	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACAACTGTTTTTTG	705	False	NA	-5	True	TATAAA	-21	NA	36637897	36619934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_36620736_36637897_1	chr9	-	2382	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	958	-16	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	705	False	NA	NA	False	ATTAAA	-12	NA	36637897	36620735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_36620902_36637897_1	chr9	-	2216	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	1124	-16	-166	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTAACTCTGAACTTATT	705	False	NA	0	True	AATAAA	-17	NA	36637897	36620901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032116.19_36643722_36678915_1	chr9	-	2725	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	60	3082	0	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	-19	True	NA	NA	NA	36678915	36643721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ENSMUSG00000032116.19_36643977_36678915_1	chr9	-	2470	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	60	3337	0	-255	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTTATTTGTTTTGAC	NA	False	NA	-4	True	ATTAAA	-24	NA	36678915	36643976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ENSMUSG00000032121.10_37119519_37134474_1	chr9	+	1097	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	0	1522	0	-1522	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119518	37134474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032121.10_37119519_37134474_2	chr9	+	1032	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	0	-1522	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	19.2527054375915	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119518	37134474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_37119637_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032121.10_37119632_37134474_2	chr9	+	984	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	113	1522	113	-1522	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119631	37134474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032123.6_44238170_44244897_1	chr9	+	1877	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	28	300	0	-294	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAGTGTAGCATCCCCT	3802	False	NA	17	True	AATAAA	-20	NA	44238169	44244897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032171.8_20563391_20574986_1	chr9	+	949	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	0	2894	0	-2894	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	2303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
ENSMUSG00000032178.15_21314477_21316659_1	chr9	+	1121	3	ISM	ENSMUSG00000032178.15	ENSMUST00000215169.2	2118	10	5712	-3	-452	2	3prime_fragment	FALSE	canonical	3	965	junction_1	190.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	118	True	AATAAA	-16	NA	21314476	21316659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_21314798_21315355_21315488_21315991
ENSMUSG00000032180.12_21418851_21421490_1	chr9	-	1285	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	40	-312	-7	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421490	21418850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ENSMUSG00000032182.16_21499982_21504075_2	chr9	-	1907	10	NIC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6117	False	NA	-20	True	AATAAA	-13	NA	21504075	21499981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUSG00000032187.17_21527560_21553888_1	chr9	+	1926	10	ISM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	0	60774	0	-43636	5prime_fragment	FALSE	canonical	3	544	junction_6	59.085625249388	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGCTGGGCCTGACTAAG	1332	False	NA	55	True	NA	NA	NA	21527559	21553888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720
ENSMUSG00000032215.16_73020730_73029887_1	chr9	+	815	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	728	0	36	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGTGTGAAATCCGAAT	8580	False	NA	26	True	CATAAA	-19	NA	73020729	73029887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUSG00000032216.16_72569769_72657134_1	chr9	+	5358	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	141	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTCCGTTACCTAAA	NA	False	NA	NA	False	AATAAA	-27	NA	72569768	72657134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
ENSMUSG00000032221.15_72345817_72365858_1	chr9	+	1801	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	0	3449	0	-3449	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	NA	False	NA	5	True	ATTAAA	-17	NA	72345816	72365858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
ENSMUSG00000032221.15_72359643_72365858_1	chr9	+	868	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13826	3449	13826	-3449	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	1866	False	NA	5	True	ATTAAA	-17	NA	72359642	72365858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_72360121_72364059_72364186_72365594
ENSMUSG00000032246.15_62775928_62783203_1	chr9	+	806	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10542	0	10512	0	3prime_fragment	FALSE	canonical	3	41	junction_1	28	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	2993	False	NA	9	True	AATAAA	-21	NA	62775927	62783203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_62776100_62778547_62778737_62782758
ENSMUSG00000032249.15_62248611_62285100_1	chr9	+	1119	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	994	0	37	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTATTTCCCCCCCTCC	NA	False	NA	8	True	AATAAA	-19	NA	62248610	62285100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUSG00000032254.11_61824562_61854019_1	chr9	-	3049	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854019	61824561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUSG00000032279.12_54493765_54511073_1	chr9	+	1561	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-30	872	0	-147	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAGATAACATTATTCT	NA	False	NA	NA	False	AATAAA	-18	NA	54493764	54511073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_1	chr9	+	1819	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	721.870859080821	1308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_54493828_54497141_54497205_54499444_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_2	chr9	+	1693	11	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	555.128237437081	208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_54493828_54497141_54497181_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_3	chr9	+	1717	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-30	716	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	1389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032293.9_54771073_54817316_1	chr9	+	3272	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	2498	0	-2498	multi-exon	TRUE	canonical	3	193	junction_6	38.4690587449917	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGTTGAAGATTCATAT	2626	False	NA	4	True	AATAAA	-14	NA	54771072	54817316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032294.18_59563856_59586658_1	chr9	+	2227	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	205	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	9102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59564523_59586658_1	chr9	+	2185	11	Fusion	ENSMUSG00000111394.2_ENSMUSG00000032294.18	novel	625	5	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6949.01488629863	9042	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	2536	False	NA	20	True	AATAAA	-20	NA	59564522	59586658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr9_+_59564554_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032299.11_57062321_57065600_1	chr9	-	779	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	406.295322258193	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGGGTCTTGCTTGCTT	6292	False	NA	-2	True	AATAAA	-17	NA	57065600	57062320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064350_57064423_57065555
ENSMUSG00000032306.15_57451863_57460046_1	chr9	-	1456	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	324	0	-324	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCATGCCCAGGCTGGAC	8951	False	NA	-2	True	AGTAAA	-20	NA	57460046	57451862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUSG00000032309.16_55116270_55131485_1	chr9	+	1819	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	61	232	0	-223	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATTAAAGAACTGGTTT	NA	False	NA	NA	False	AAAAAG	-8	NA	55116269	55131485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032316.9_57657995_57672397_1	chr9	-	1650	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9814	False	NA	-12	True	AATAAA	-18	NA	57672397	57657994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032316.9_57657995_57672397_3	chr9	-	1747	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	746	3	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9814	False	NA	-12	True	AATAAA	-18	NA	57672397	57657994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032320.8_55949154_55966172_1	chr9	+	1822	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	13	189	0	-189	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTGGGTTTTTGTTTT	973	False	NA	6	True	AATAAA	-17	NA	55949153	55966172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ENSMUSG00000032320.8_55949306_55966172_1	chr9	+	1670	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	165	189	137	-189	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTGGGTTTTTGTTTT	1125	False	NA	6	True	AATAAA	-17	NA	55949305	55966172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ENSMUSG00000032324.12_56043168_56068237_1	chr9	-	1612	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	104	0	-33	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068237	56043167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUSG00000032328.13_79678078_79700712_1	chr9	-	1805	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	1853	0	1756	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCGTGTGTAAAGGCTT	NA	False	NA	0	True	AATAAA	-18	NA	79700712	79678077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUSG00000032330.8_79662688_79666995_1	chr9	-	449	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	165	45	-3	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	3490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTCCCTTTTCACT	NA	False	NA	-14	True	AATAAA	-16	NA	79666995	79662687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ENSMUSG00000032336.18_58489690_58560161_1	chr9	+	1909	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	115	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	17	False	NA	NA	False	AATAAA	-16	NA	58489689	58560161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ENSMUSG00000032346.8_78284679_78285896_1	chr9	-	739	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	111	1288	111	-1288	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	2598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATGGTTCGGGGAGTAT	NA	False	NA	-9	True	AGTAAA	-24	NA	78285896	78284678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032346.8_78284730_78285835_1	chr9	-	627	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	172	1339	172	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	2319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	-9	True	TATAAA	-16	NA	78285835	78284729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032346.8_78284730_78286007_1	chr9	-	799	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	0	1339	0	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	2633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	-9	True	TATAAA	-16	NA	78286007	78284729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032366.16_66929875_66951207_1	chr9	-	1729	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	-123	1	-18	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66951207	66929874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935248_66951071_1	chr9	-	1025	9	NIC	ENSMUSG00000032366.16	novel	998	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951071	66935247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935248_66951207_1	chr9	-	1161	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-192	-82	-18	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951207	66935247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935248_66951207_2	chr9	-	1161	9	NIC	ENSMUSG00000032366.16	novel	998	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951207	66935247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032369.14_92132395_92154034_1	chr9	+	1413	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	592	297	0	4	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132394	92154034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUSG00000032376.13_66425159_66500291_1	chr9	-	2234	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	133	3240	-3	0	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTCCAGAACTGCTCCA	NA	False	NA	-19	True	ATTAAA	-31	NA	66500291	66425158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ENSMUSG00000032381.6_66033893_66046239_1	chr9	+	1192	4	NIC	ENSMUSG00000032381.6	novel	1240	5	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	323.837750870538	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCACCTTAGGTTTTTA	1383	False	NA	19	True	AATAAA	-20	NA	66033892	66046239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_66034253_66039808_66039974_66043583_66043630_66045618
ENSMUSG00000032381.6_66034109_66046239_1	chr9	+	1026	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	216	-2	216	2	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCACCTTAGGTTTTTA	1599	False	NA	19	True	AATAAA	-20	NA	66034108	66046239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUSG00000032382.15_65995415_66032079_1	chr9	-	1984	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	89	0	0	0	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66032079	65995414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
ENSMUSG00000032386.16_65739041_65792337_1	chr9	-	3395	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	1	-1397	0	0	multi-exon	TRUE	canonical	3	144	junction_4	28.3474229673332	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGGTTGGAAGTTCTCT	NA	False	NA	-11	True	AATAAA	-28	NA	65792337	65739040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032386.16_65740647_65792337_2	chr9	-	1789	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	1	209	0	-209	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATACAACATAGTGGAGTC	NA	False	NA	NA	False	AATAAA	-26	NA	65792337	65740646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032387.16_65536930_65567808_1	chr9	+	1915	9	NIC	ENSMUSG00000032387.16	novel	1803	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	514.959813359256	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65536929	65567808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUSG00000032387.16_65537841_65567808_1	chr9	+	1948	8	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_5	561.049635841207	690	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558867_65558987_65566416_65566487_65566719
ENSMUSG00000032387.16_65537841_65567808_2	chr9	+	1498	3	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	70	junction_1	814.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_65538180_65566416_65566487_65566719
ENSMUSG00000032388.8_65368235_65394470_1	chr9	+	1392	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	6	1282	0	-1282	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCTCCACTCTGTTCAT	7182	False	NA	34	True	TTTAAA	-41	NA	65368234	65394470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ENSMUSG00000032388.8_65368235_65394738_1	chr9	+	1660	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	6	1014	0	-1014	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGGCTTCTGTGATGA	7182	False	NA	11	True	AATAAA	-13	NA	65368234	65394738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ENSMUSG00000032397.8_64188885_64211901_1	chr9	+	1042	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	-4	173	0	-173	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_2	chr9	+	1036	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	805	0	-173	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_3	chr9	+	1037	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	0	-173	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_4	chr9	+	1031	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	-173	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_1	chr9	+	1206	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_2	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	630	0	2	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	1546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_3	chr9	+	1142	7	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	40	junction_5	1014.70478739166	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_4	chr9	+	1212	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	1515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032398.8_64086556_64089943_1	chr9	+	757	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	471	0	-471	multi-exon	FALSE	canonical	3	413	junction_2	26	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGATTTTTTTCT	1628	False	NA	7	True	AATAAA	-3	NA	64086555	64089943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUSG00000032399.9_64080657_64085801_1	chr9	+	1391	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	147	0	-147	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	26792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080656	64085801	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUSG00000032400.19_64044426_64080185_1	chr9	-	2756	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	201	0	0	0	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	0	True	ACTAAA	-20	NA	64080185	64044425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
ENSMUSG00000032405.11_62789084_62888165_1	chr9	-	2134	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	-4	3434	0	1078	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATTTTCAGTTTTACTT	NA	False	NA	NA	False	ATTAAA	-22	NA	62888165	62789083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ENSMUSG00000032407.15_95343031_95393938_1	chr9	-	3541	28	FSM	ENSMUSG00000032407.15	ENSMUST00000079659.12	7630	28	9	4080	0	0	multi-exon	TRUE	canonical	0	0	junction_13	184.18480907976	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8302	False	NA	-1	True	AATAAA	-17	NA	95393938	95343030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
ENSMUSG00000032412.9_96214708_96246368_1	chr9	-	1867	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	127	0	127	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246368	96214707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032412.9_96215097_96246368_1	chr9	-	1478	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	127	389	127	-389	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGCTTCTGCGCATGT	NA	False	NA	-6	True	AATAAA	-16	NA	96246368	96215096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032423.13_88334490_88338570_1	chr9	-	2014	2	ISM	ENSMUSG00000032423.13	ENSMUST00000174688.8	3176	9	24248	0	24227	0	3prime_fragment	FALSE	canonical	3	723	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTTACTGGTATAGCT	NA	False	NA	-13	True	AATAAA	-19	NA	88338570	88334489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_88336349_88338415
ENSMUSG00000032423.13_88335991_88338570_1	chr9	-	513	2	ISM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	25632	0	24227	0	3prime_fragment	FALSE	canonical	3	723	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88338570	88335990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_88336349_88338415
ENSMUSG00000032423.13_88335991_88364249_1	chr9	-	2158	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	363	6929	0	0	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88364249	88335990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032423.13_88337631_88364249_1	chr9	-	2585	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	359	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	88364249	88337630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032436.18_114585904_114611061_1	chr9	-	1137	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	-144	0	-137	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114611061	114585903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000032463.11_98868454_98884074_2	chr9	+	1048	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	27	-272	0	0	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3572	False	NA	9	True	AATAAA	-23	NA	98868453	98884074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUSG00000032468.12_99362146_99450702_1	chr9	-	2676	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	250	1721	0	-1721	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACATAGATTTTCTTTAT	NA	False	NA	1	True	AGTAAA	-27	NA	99450702	99362145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUSG00000032469.13_99457881_99466261_1	chr9	+	1939	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	29	293	0	-293	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGACCATTTTTAAGAC	6435	False	NA	14	True	ATTAAA	-18	NA	99457880	99466261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032469.13_99457881_99466398_1	chr9	+	2076	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	29	156	0	-156	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATTGGCTCTTGTATAT	6435	False	NA	NA	False	ATTAAA	-23	NA	99457880	99466398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032470.18_99270032_99302446_1	chr9	-	1384	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-241	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2309	False	NA	28	True	ATTAAA	-15	NA	99302446	99270031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ENSMUSG00000032470.18_99270032_99318557_1	chr9	-	1265	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	877	2559	422	0	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	4116	False	NA	28	True	ATTAAA	-15	NA	99318557	99270031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
ENSMUSG00000032475.16_100377056_100428175_1	chr9	-	1754	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	12	2710	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100428175	100377055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
ENSMUSG00000032478.15_109661839_109672031_1	chr9	+	1131	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	22	-434	0	7	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661838	109672031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_109661954_109672031_1	chr9	+	1016	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	137	-434	0	7	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661953	109672031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032479.16_109760868_109857193_1	chr9	+	916	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTGGCTGGCTTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	109760867	109857193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
ENSMUSG00000032494.13_110768671_110775143_1	chr9	-	1849	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	83	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	2171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775143	110768670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUSG00000032495.9_110782239_110811316_1	chr9	+	1813	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-628	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	278	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110782238	110811316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_1	chr9	+	1548	7	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	0	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_4	82.1734277137216	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799248_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_2	chr9	+	1528	7	ISM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	9289	1818	0	-1818	3prime_fragment	FALSE	canonical	3	227	junction_2	34.6959011347962	238	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032498.10_111057323_111060043_1	chr9	-	654	4	ISM	ENSMUSG00000032498.10	ENSMUST00000135218.8	3762	18	40571	27	-27	0	3prime_fragment	FALSE	canonical	0	0	junction_3	180.765655538385	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	2781	False	NA	-27	True	AATAAA	-15	NA	111060043	111057322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968
ENSMUSG00000032498.10_111057323_111100608_1	chr9	-	2498	19	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	111.636756635522	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100608	111057322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097372_111100476
ENSMUSG00000032498.10_111057323_111100608_2	chr9	-	2503	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	251	0	6	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100608	111057322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUSG00000032513.9_119755654_119766618_1	chr9	-	2562	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	13	1331	-2	-1331	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTAACTAAAGCTTT	NA	False	NA	0	True	AATAAA	-19	NA	119766618	119755653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
ENSMUSG00000032517.17_119978808_119997728_1	chr9	+	785	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	35	716	0	524	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGGCGTGGCTTCTGTT	NA	False	NA	6	True	NA	NA	NA	119978807	119997728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
ENSMUSG00000032518.7_119956855_119960625_1	chr9	+	1028	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	100	810	0	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	28273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032518.7_119956855_119960772_1	chr9	+	1175	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	100	663	0	147	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	28308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTAGGTGGCTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	119956854	119960772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032519.12_119939471_119953391_1	chr9	+	1581	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	31	179	0	-179	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1791	False	NA	5	True	AATAAA	-30	NA	119939470	119953391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032527.14_100864553_100916937_1	chr9	-	1838	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	14	468	-3	-468	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCATTGTTATAGTAAA	NA	False	NA	NA	False	AATAAA	-1	NA	100916937	100864552	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
ENSMUSG00000032534.19_102463886_102503748_1	chr9	-	2096	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	-15	2099	-15	0	multi-exon	FALSE	canonical	3	75	junction_12	13.3260396717604	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACATGAATGTTTATTA	NA	False	NA	-10	True	AATAAA	-17	NA	102503748	102463885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
ENSMUSG00000032551.8_122776600_122780065_1	chr9	-	915	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	2446	0	0	multi-exon	FALSE	canonical	3	36	junction_2	10	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTTAGTCACTGTTCT	NA	False	NA	NA	False	ATTAAA	-27	NA	122780065	122776599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUSG00000032553.15_103066289_103079328_1	chr9	-	1752	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	124	junction_1	54.7454219500571	415	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_103066653_103066898_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032553.15_103066289_103079328_3	chr9	-	1852	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	418	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032557.14_103923798_103940333_1	chr9	-	2273	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	152.222586945339	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_103924188_103924254_103924366_103924429_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUSG00000032557.14_103924713_103940333_1	chr9	-	1489	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	915	0	136	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATGTGTATCTTCAC	NA	False	NA	-35	True	AATAAA	-17	NA	103940333	103924712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUSG00000032563.17_104930469_104954665_1	chr9	+	1519	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	31	2422	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930468	104954665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUSG00000032575.17_106765952_106769137_1	chr9	-	868	4	FSM	ENSMUSG00000032575.17	ENSMUST00000159283.8	2247	4	41	1338	-21	0	multi-exon	FALSE	canonical	3	771	junction_3	24.1660919471891	635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCACAGTATTCTGTCC	NA	False	NA	-11	True	ATTAAA	-24	NA	106769137	106765951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106766425_106767359_106767502_106768269_106768398_106769012
ENSMUSG00000032577.17_107132134_107166986_1	chr9	-	2681	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	60.0594746552762	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATGATTCCTGGGTTT	NA	False	NA	-10	True	AATAAA	-16	NA	107166986	107132133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_107132539_107132575_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ENSMUSG00000032579.15_107204909_107215549_1	chr9	-	1188	10	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	55.2618905142583	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215549	107204908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107215479
ENSMUSG00000032579.15_107204909_107215549_2	chr9	-	1566	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	0	626	0	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215549	107204908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
ENSMUSG00000032582.15_107650758_107749921_1	chr9	-	2108	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7612	False	NA	NA	False	AATAAA	-22	NA	107749921	107650757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
ENSMUSG00000032586.10_107828166_107848729_1	chr9	+	1955	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	11	740	0	5	multi-exon	TRUE	canonical	3	256	junction_7	39.1366001255571	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGCTGTATAAATTT	NA	False	NA	18	True	AATAAA	-19	NA	107828165	107848729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ENSMUSG00000032590.15_107962612_107971667_1	chr9	-	2380	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	138	0	-2	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971667	107962611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
ENSMUSG00000032602.7_108539297_108561335_1	chr9	+	1278	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	505	0	-505	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGGCCAAATTGCCA	5077	False	NA	29	True	AATAAA	-17	NA	108539296	108561335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ENSMUSG00000032604.17_108385258_108393135_1	chr9	+	2442	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	353	5	0	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108385257	108393135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUSG00000032606.8_108167643_108172641_1	chr9	+	1062	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	15	1056	0	662	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTGTTTTGACACT	NA	False	NA	NA	False	GATAAA	-22	NA	108167642	108172641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUSG00000032612.15_108225096_108269461_1	chr9	+	3335	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	44	283	0	3	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGTTGTCCTCTAGTT	NA	False	NA	13	True	AGTAAA	-17	NA	108225095	108269461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
ENSMUSG00000032621.9_103879698_103911014_1	chr13	-	2254	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	102	1578	100	421	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGATGATGTGCTT	10019	False	NA	NA	False	AATATA	-1	NA	103911014	103879697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ENSMUSG00000032641.19_134846120_134874850_1	chr6	-	1551	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134874850	134846119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032673.6_29462876_29465031_1	chr11	-	1007	3	FSM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	0	1119	0	0	multi-exon	FALSE	canonical	3	43	junction_2	1	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465031	29462875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29463677_29464431_29464523_29464916
ENSMUSG00000032673.6_29463042_29465031_1	chr11	-	750	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	2	166	0	-166	multi-exon	FALSE	canonical	3	382	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGGAGCCAGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	29465031	29463041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29463677_29464916
ENSMUSG00000032679.13_103926185_103944425_1	chr2	+	378	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	39	1274	0	-183	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103926184	103944425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103944659_1	chr2	+	612	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	39	1040	0	51	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGGGAGGAGTTTAAGC	NA	False	NA	3	True	AATAAA	-21	NA	103926184	103944659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032745.19_111562214_111626378_2	chr13	-	3427	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	267	0	184	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626378	111562213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032745.19_111562692_111626378_1	chr13	-	2949	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	267	478	184	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGTCTTAAAATGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	111626378	111562691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032745.19_111562692_111626378_2	chr13	-	2889	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	184	226	184	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGTCTTAAAATGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	111626378	111562691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032757.7_4077873_4086939_1	chr6	-	509	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	33	974	-9	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGGCTTTGAATTTGT	-2	True	NA	-9	True	ATTAAA	-18	NA	4086939	4077872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUSG00000032763.12_78410310_78420336_1	chr10	+	2522	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5375	False	NA	30	True	AATAAA	-39	NA	78410309	78420336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032763.12_78410310_78420336_2	chr10	+	2256	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5375	False	NA	30	True	AATAAA	-39	NA	78410309	78420336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032788.16_78276433_78300809_1	chr10	-	1269	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	0	3855	0	-3855	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGATTCACAACCATGG	6802	False	NA	3	True	TTTAAA	-24	NA	78300809	78276432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
ENSMUSG00000032802.9_151947650_151953296_1	chr2	+	2606	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	0	206	0	multi-exon	FALSE	canonical	3	134	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	False	NA	31	True	NA	NA	NA	151947649	151953296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151947868_151950908
ENSMUSG00000032840.8_118383292_118399583_1	chr5	+	1074	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	4575	0	-4575	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGCTCTCATTTCCTGA	1639	False	NA	5	True	AATACA	-14	NA	118383291	118399583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
ENSMUSG00000032869.16_151560185_151583213_1	chr2	-	1339	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	17	2453	0	0	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	False	NA	-28	True	AATACA	-15	NA	151583213	151560184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
ENSMUSG00000032872.17_86904140_86959061_1	chr9	+	1805	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	73	766	0	-373	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTCTTGGTTTAATTT	NA	False	NA	12	True	AATGAA	-21	NA	86904139	86959061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904140_86959317_1	chr9	+	2061	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	73	510	0	-117	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGGAATTGATGGTGTAT	NA	False	NA	NA	False	ATTAAA	-20	NA	86904139	86959317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904140_86959434_1	chr9	+	2178	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	73	393	0	0	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTGTGGTGGACGTGTG	NA	False	NA	11	True	AATAAA	-22	NA	86904139	86959434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032883.16_78676793_78684697_1	chr1	+	1356	6	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	41193	-13	2420	13	3prime_fragment	FALSE	canonical	3	450	junction_2	17.4310068556007	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCGAATATATGCCTGACA	2587	False	NA	16	True	AATAAA	-27	NA	78676792	78684697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ENSMUSG00000032892.15_68863310_68864669_1	chr11	-	799	5	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	253.801472611961	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_68863568_68863768_68863855_68863963_68864100_68864266_68864384_68864467
ENSMUSG00000032892.15_68863310_68864669_2	chr11	-	987	4	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	482	junction_2	50.8876758710354	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_68863568_68863768_68863855_68863942_68864384_68864467
ENSMUSG00000032902.2_104545984_104564574_1	chr3	+	3222	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	1204	0	-1204	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	23	True	AATAAA	-24	NA	104545983	104564574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
ENSMUSG00000032905.6_46865493_46874624_1	chr18	-	2461	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	22	2282	0	-2282	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCAGAATAACTTATTG	NA	False	NA	-11	True	AATAAA	-18	NA	46874624	46865492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUSG00000032905.6_46867323_46874624_1	chr18	-	631	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	22	4112	0	1291	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTAGAGTGTGCCATTACT	NA	False	NA	NA	False	CATAAA	-19	NA	46874624	46867322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUSG00000032932.16_75554474_75563670_1	chr16	-	1634	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	39	2564	0	-946	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGTATTTCTAAAGTAA	4020	False	NA	NA	False	NA	NA	NA	75563670	75554473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
ENSMUSG00000032939.15_94941205_95041488_1	chr8	+	2699	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	246.553366146716	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941204	95041488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_94941265_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUSG00000032946.17_6449898_6453668_1	chr19	+	618	5	NIC	ENSMUSG00000032946.17	novel	453	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	104.357558422953	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449897	6453668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUSG00000032959.13_117420719_117425590_1	chr5	-	1140	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	100	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	4472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425590	117420718	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
ENSMUSG00000032965.12_49519596_49584480_1	chr16	+	1592	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	1009	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519595	49584480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032965.12_49519718_49584480_1	chr16	+	1470	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	122	1009	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519717	49584480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032966.15_151384505_151402748_1	chr2	+	692	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	102	864	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGGTGAAGACTCAGT	NA	False	NA	9	True	CATAAA	-16	NA	151384504	151402748	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUSG00000032966.15_151384505_151403611_1	chr2	+	1555	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	102	1	0	-1	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTCATGGAGGTTG	NA	False	NA	24	True	AATAAA	-25	NA	151384504	151403611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUSG00000032977.10_77323999_77351619_1	chr10	-	890	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	1504	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTGTGGCTTTACTTC	NA	False	NA	-3	True	AATAAA	-35	NA	77351619	77323998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUSG00000033009.16_94763888_94791298_1	chr8	+	1997	13	FSM	ENSMUSG00000033009.16	ENSMUST00000109556.9	5310	13	62	3251	0	-3251	multi-exon	FALSE	canonical	3	129	junction_2	14.2971928091574	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCGTTCTGTAGTAA	NA	False	NA	13	True	NA	NA	NA	94763887	94791298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
ENSMUSG00000033020.8_79025551_79035967_1	chr15	+	536	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	342	7	0	3	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	1291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	21	True	AATAAA	-15	NA	79025550	79035967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
ENSMUSG00000033020.8_79025551_79035967_2	chr15	+	717	4	ISM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	-15	-173	0	3	intron_retention	FALSE	canonical	3	2040	junction_3	39.0640499692492	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	21	True	AATAAA	-15	NA	79025550	79035967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535
ENSMUSG00000033020.8_79025551_79035967_3	chr15	+	602	5	FSM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	-15	-173	0	3	multi-exon	FALSE	canonical	3	17	junction_4	890.483962517012	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	21	True	AATAAA	-15	NA	79025550	79035967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035674_79035788
ENSMUSG00000033021.17_75412612_75419819_1	chr1	+	1803	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	1	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTTGGACTCCTACTT	NA	False	NA	14	True	AATAAA	-18	NA	75412611	75419819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_75412612_75419819_2	chr1	+	1797	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	1	intron_retention	FALSE	canonical	3	14	junction_1	75.8797934601535	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTTGGACTCCTACTT	NA	False	NA	14	True	AATAAA	-18	NA	75412611	75419819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033022.9_46846574_46861422_1	chr18	-	1241	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	40	314	0	-303	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCACGTGTCTGTTTTCA	2617	False	NA	-3	True	AGTAAA	-17	NA	46861422	46846573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUSG00000033031.14_48814551_48839614_1	chr16	+	3520	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	454	0	-400	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTTGTTCTTTGCTT	NA	False	NA	20	True	ATTAAA	-21	NA	48814550	48839614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
ENSMUSG00000033032.16_61863332_61870387_1	chr18	-	1657	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49295	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61870387	61863331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
ENSMUSG00000033099.11_78819133_78825065_1	chr15	+	948	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	0	2773	0	1	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTCTGTGCTTGTGCTT	NA	False	NA	11	True	NA	NA	NA	78819132	78825065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033099.11_78819386_78825065_1	chr15	+	1314	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTCTGTGCTTGTGCTT	NA	False	NA	11	True	NA	NA	NA	78819385	78825065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033106.7_106927070_106937567_1	chr8	-	1527	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	-2	-279	0	279	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ENSMUSG00000033106.7_106927070_106937567_2	chr8	-	1614	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	-2	-279	0	279	intron_retention	FALSE	canonical	3	127	junction_1	3.29983164553722	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
ENSMUSG00000033106.7_106927070_106937567_3	chr8	-	1622	4	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	0	279	intron_retention	FALSE	canonical	3	16	junction_2	53.0471488394994	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996
ENSMUSG00000033107.7_21077682_21117081_1	chr18	+	1510	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	-162	0	162	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTGATAGAAGAT	5341	False	NA	NA	False	NA	NA	NA	21077681	21117081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033111.17_10167784_10185509_1	chr14	-	960	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	65.3029265976818	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185509	10167783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUSG00000033114.12_64244955_64277155_1	chr13	-	1456	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	14	833	-5	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277155	64244954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
ENSMUSG00000033157.18_45550088_45563264_2	chr16	-	1081	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	119.092233164048	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563264	45550087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_45550357_45552069_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_45551512_45563264_2	chr16	-	1370	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	54	1424	1	402	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCATGCTATATTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	45563264	45551511	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_45551737_45563264_1	chr16	-	961	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	1	177	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563264	45551736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000033157.18_45551737_45563264_2	chr16	-	1145	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	54	1649	1	177	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563264	45551736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033166.12_99314706_99335139_1	chr14	-	2528	19	ISM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	2067	2064	1227	0	3prime_fragment	FALSE	canonical	3	393	junction_13	28.27946949753	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTATTGAGTTGCTGA	4594	False	NA	-11	True	AATACA	-24	NA	99335139	99314705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020
ENSMUSG00000033174.18_88701476_88802856_1	chr6	+	1108	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	82	2486	0	0	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACCCTTAGTACCCTA	NA	False	NA	NA	False	NA	NA	NA	88701475	88802856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
ENSMUSG00000033186.10_99271696_99283556_1	chr14	-	2470	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	0	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283556	99271695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
ENSMUSG00000033213.17_122479835_122483005_1	chr2	+	621	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	65	106	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUSG00000033216.10_88234855_88423489_1	chr6	-	2108	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	32	539	-5	0	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTAGTGTGCCCATAGT	NA	False	NA	-17	True	AATAAA	-12	NA	88423489	88234854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000033285.16_100045496_100069723_1	chr3	-	3377	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
ENSMUSG00000033287.17_78312862_78323503_1	chr15	+	1446	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	0	-460	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312861	78323503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
ENSMUSG00000033318.8_75667679_75670244_1	chr10	-	899	5	FSM	ENSMUSG00000033318.8	ENSMUST00000038257.7	1370	5	471	0	-27	0	multi-exon	FALSE	canonical	3	39	junction_1	6.29980158417708	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75670244	75667678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008
ENSMUSG00000033319.6_46637968_46658926_1	chr18	-	2459	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	112	3155	112	-3155	multi-exon	FALSE	canonical	3	135	junction_1	21.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTTGTGAATTATTGAG	NA	False	NA	-20	True	TATAAA	-15	NA	46658926	46637967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_46639457_46657168_46657897_46658684
ENSMUSG00000033373.17_76884188_76967137_1	chr12	+	1564	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	1049	0	132	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTGGTGTGATTTTT	NA	False	NA	NA	False	AAAACA	-24	NA	76884187	76967137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUSG00000033373.17_76948951_76968186_1	chr12	+	1910	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7309	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76948950	76968186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUSG00000033379.14_117741530_117744530_1	chr4	-	1191	7	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	2123	junction_6	174.331102598857	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744530	117741529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000033379.14_117741530_117744530_2	chr4	-	1053	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744530	117741529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
ENSMUSG00000033429.11_64042488_64061873_1	chr7	+	733	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	95	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042487	64061873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_64042592_64049916_64050255_64061582
ENSMUSG00000033430.11_112738034_112745833_1	chr8	+	2229	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	4	1327	0	-1327	multi-exon	FALSE	canonical	3	135	junction_1	1.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCATTTTCTTTGATTTT	NA	False	NA	NA	False	AATAAA	-27	NA	112738033	112745833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_112738775_112741968_112742094_112744470
ENSMUSG00000033434.16_110251841_110255473_1	chr5	-	1371	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255473	110251840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
ENSMUSG00000033434.16_110251841_110255577_1	chr5	-	1475	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255577	110251840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
ENSMUSG00000033434.16_110251841_110256006_1	chr5	-	1646	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_8	32.0497659897853	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256006	110251840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
ENSMUSG00000033439.13_116374743_116388536_1	chr3	-	1866	11	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	19700	1	0	0	3prime_fragment	FALSE	canonical	3	87	junction_7	13.8524366087703	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388536	116374742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000033460.15_133618737_133622666_1	chrX	+	2263	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033460.15_133618737_133622666_2	chrX	+	2287	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
ENSMUSG00000033460.15_133618737_133622666_3	chrX	+	2171	5	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033460.15_133618737_133622666_4	chrX	+	2078	4	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033467.13_109702575_109703441_1	chr5	-	665	2	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	898	-6	898	0	intron_retention	FALSE	canonical	3	615	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703441	109702574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_109702937_109703138
ENSMUSG00000033467.13_109702575_109703441_2	chr5	-	516	3	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	898	-6	898	0	3prime_fragment	FALSE	canonical	3	516	junction_2	49.5	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703441	109702574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_109702937_109703138_109703224_109703372
ENSMUSG00000033475.16_47997571_47998993_1	chr17	-	634	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	115	0	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	1960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCAAGAGACAGGCATG	NA	False	NA	82	True	AATAAA	-16	NA	47998993	47997570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47997934_47998112_47998214_47998823
ENSMUSG00000033475.16_47997665_47998993_1	chr17	-	719	2	FSM	ENSMUSG00000033475.16	ENSMUST00000143156.2	1037	2	318	0	0	0	multi-exon	FALSE	canonical	3	4486	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47998214_47998823
ENSMUSG00000033475.16_47997665_47998993_2	chr17	-	540	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	115	94	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	1922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47997934_47998112_47998214_47998823
ENSMUSG00000033543.18_69919856_69930020_1	chr9	+	1009	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
ENSMUSG00000033543.18_69919856_69930020_2	chr9	+	911	6	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	366.992098007573	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033543.18_69919856_69930020_3	chr9	+	741	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	24	128	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033554.18_115681843_115722737_1	chr3	+	1245	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
ENSMUSG00000033554.18_115681843_115722737_2	chr3	+	1090	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	88.5183596775268	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722250_115722480
ENSMUSG00000033554.18_115681843_115722737_3	chr3	+	1321	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	11	244	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUSG00000033554.18_115681843_115722981_1	chr3	+	1489	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7769	False	NA	NA	False	TTTAAA	-6	NA	115681842	115722981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
ENSMUSG00000033589.5_70782794_70786375_1	chr14	+	1675	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	103	-334	0	2	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCTCTTCACATCTCAT	6567	False	NA	32	True	AATAAA	-28	NA	70782793	70786375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUSG00000033590.9_75139302_75165648_1	chr9	+	1584	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	0	47085	0	0	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGGGTCATGGTGTCC	5128	False	NA	NA	False	AATATA	-1	NA	75139301	75165648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
ENSMUSG00000033658.17_111734644_111754397_1	chr8	-	1789	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	-1	4824	-1	-1353	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCATCTTTTTTTTTTGG	NA	False	NA	2	True	AATACA	-20	NA	111754397	111734643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
ENSMUSG00000033658.17_111734644_111758383_1	chr8	-	1751	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	0	1353	0	-1353	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCATCTTTTTTTTTTGG	NA	False	NA	2	True	AATACA	-20	NA	111758383	111734643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
ENSMUSG00000033685.14_100142561_100148832_1	chr7	+	1576	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	17	2395	0	323	multi-exon	TRUE	canonical	3	366	junction_1	56.4938140012529	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100145286_100148832_1	chr7	+	1431	7	NIC	ENSMUSG00000033685.14	novel	742	4	NA	NA	0	323	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	173.154795871594	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100145285	100148832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_100145415_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033701.14_155434423_155448034_1	chr1	+	436	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	557	0	551	0	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	False	NA	15	True	NA	NA	NA	155434422	155448034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
ENSMUSG00000033701.14_155434423_155562979_1	chr1	+	940	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	555	4097	551	138	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGACGTCTCAGCAACTC	NA	False	NA	29	True	AATAAA	-21	NA	155434422	155562979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUSG00000033706.14_85408971_85422414_1	chr6	+	1483	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	1003	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCATCACAAGCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	85408970	85422414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ENSMUSG00000033728.15_76594863_76599291_1	chr15	+	2216	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	25	2608	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGTGTTGCTTTATCA	NA	False	NA	NA	False	NA	NA	NA	76594862	76599291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033732.11_111537124_111573413_1	chr8	-	4277	26	FSM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	-5	253	-5	-253	multi-exon	FALSE	canonical	3	597	junction_23	101.482656646345	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	-28	True	TATAAA	-17	NA	111573413	111537123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
ENSMUSG00000033751.6_85558913_85561093_1	chr8	+	714	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	762	1018	762	-1018	multi-exon	FALSE	canonical	3	736	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTACACATTCTCCCTC	3436	False	NA	25	True	AATAAA	-20	NA	85558912	85561093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85559270_85560736
ENSMUSG00000033751.6_85558913_85562111_1	chr8	+	1732	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	762	0	762	0	multi-exon	FALSE	canonical	3	736	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATACTTTCTC	3436	False	NA	NA	False	NA	NA	NA	85558912	85562111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85559270_85560736
ENSMUSG00000033752.8_83995240_84063093_1	chr3	-	800	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033781.8_3684032_3701774_1	chr13	+	2405	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	2048	0	1288	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCCCTGTGTCTTATT	NA	False	NA	6	True	AATAAA	-15	NA	3684031	3701774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033793.13_5153790_5232671_1	chr1	+	1828	14	NIC	ENSMUSG00000033793.13	novel	970	5	NA	NA	403	29	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	139.358420021071	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCTTAAATTTTGCTT	NA	False	NA	17	True	ATTAAA	-17	NA	5153789	5232671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_5153849_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUSG00000033808.17_120185793_120234562_1	chr2	-	2871	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	132.468147114693	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234562	120185792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_120185973_120185995_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202103_120204372_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000033809.16_20424222_20429499_1	chr16	-	1002	6	NIC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.001951207905	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429499	20424221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20429292
ENSMUSG00000033809.16_20424222_20429499_2	chr16	-	1374	9	NIC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	132.226072977307	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429499	20424221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429329
ENSMUSG00000033813.16_4928037_4966879_1	chr1	+	1298	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	1249	0	-1249	multi-exon	TRUE	canonical	3	1526	junction_2	186.842443693696	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGATCTGTTAATGC	NA	False	NA	NA	False	ATTAAA	-32	NA	4928036	4966879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033813.16_4928037_4967695_1	chr1	+	2114	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	433	0	-433	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTCTGCCTGTGTTCAG	NA	False	NA	NA	False	AGTAAA	-20	NA	4928036	4967695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033837.6_76552029_76554017_1	chr15	-	1630	3	FSM	ENSMUSG00000033837.6	ENSMUST00000037824.6	1365	3	131	-396	-15	396	multi-exon	FALSE	canonical	3	304	junction_2	19.5	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	-4	True	AGTAAA	-20	NA	76554017	76552028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76553341_76553428_76553534_76553804
ENSMUSG00000033845.14_4846600_4855962_1	chr1	-	1037	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	0	3166	0	0	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	1576	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1620	False	NA	-10	True	ATTAAA	-22	NA	4855962	4846599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033857.13_118367786_118378602_1	chr11	+	2496	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	0	1311	0	3	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAAAGGTGCTTCTTTT	NA	False	NA	9	True	CATAAA	-16	NA	118367785	118378602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ENSMUSG00000033906.6_103584523_103714418_1	chrX	-	1309	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	252	3948	252	-3948	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTCTAGTCTGGTAAAAG	NA	False	NA	-29	True	AATATA	-13	NA	103714418	103584522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
ENSMUSG00000033916.6_12765941_12768671_1	chr7	-	706	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	-100	0	-5	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6998	False	NA	-11	True	AATAAA	-17	NA	12768671	12765940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ENSMUSG00000033918.17_20098570_20121111_1	chr16	-	1273	9	NIC	ENSMUSG00000033918.17	novel	1348	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_6	575.510208423795	2336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121111	20098569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20116342_20116484_20116880_20117077_20120958
ENSMUSG00000033931.10_127675776_127697799_1	chr8	-	1548	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	22	1854	0	0	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697799	127675775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ENSMUSG00000033931.10_127676033_127697799_1	chr8	-	1291	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	22	2111	0	-257	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGACAAAAGAAAAAAGTACA	NA	False	NA	NA	False	AAAAAG	-10	NA	127697799	127676032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ENSMUSG00000033940.9_113581733_113593656_1	chr6	+	839	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	256	0	-256	multi-exon	FALSE	canonical	3	441	junction_2	10.5	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACTGTGGTGGCA	NA	False	NA	23	True	AATAAA	-16	NA	113581732	113593656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUSG00000033972.10_22558833_22580381_1	chr17	-	921	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	1863	0	-1863	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033972.10_22558833_22580381_2	chr17	-	848	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000034023.17_113508665_113514293_1	chr6	+	755	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	0	1387	0	-504	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGTCTGCCTGTCTA	NA	False	NA	NA	False	NA	NA	NA	113508664	113514293	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
ENSMUSG00000034024.9_116886906_116899280_1	chr10	-	2066	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	2899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899280	116886905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
ENSMUSG00000034024.9_116886906_116899682_1	chr10	-	1921	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	620.113430484026	2890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899682	116886905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891136_116891940_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUSG00000034042.17_116414855_116450904_1	chr4	+	3413	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	0	175	0	-175	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCTTGTGTAAGAAAT	NA	False	NA	14	True	AATAAA	-18	NA	116414854	116450904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ENSMUSG00000034064.15_38345640_38370584_1	chr16	-	2581	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	36	141	0	-138	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGCCTGTGTACCTCAC	6266	False	NA	0	True	TTTAAA	-26	NA	38370584	38345639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034064.15_38345640_38370584_2	chr16	-	2784	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	138	0	-138	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGCCTGTGTACCTCAC	6266	False	NA	0	True	TTTAAA	-26	NA	38370584	38345639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ENSMUSG00000034083.17_91855056_91876576_1	chr6	+	1482	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	22	248	0	-248	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTGGTTGTATTTGTC	NA	False	NA	11	True	TATAAA	-21	NA	91855055	91876576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
ENSMUSG00000034088.16_93358740_93406537_1	chr1	-	1015	7	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-14	25078	0	0	5prime_fragment	FALSE	canonical	3	431	junction_6	30.9914862861113	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGAGAGAAGGAGCAGCT	NA	False	NA	-58	True	NA	NA	NA	93406537	93358739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ENSMUSG00000034152.7_74320118_74356828_1	chr13	-	2411	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	0	2511	0	0	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTAGGTGCTTGGTGTG	7173	False	NA	-11	True	ATTAAA	-11	NA	74356828	74320117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
ENSMUSG00000034160.14_100683670_100696500_1	chrX	+	1302	5	ISM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	4	30046	0	0	5prime_fragment	FALSE	canonical	3	98	junction_1	113.781589020368	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683669	100696500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745
ENSMUSG00000034160.14_100683670_100696500_2	chrX	+	1439	4	FSM	ENSMUSG00000034160.14	ENSMUST00000150161.8	3087	4	-44	1692	0	0	multi-exon	FALSE	canonical	3	215	junction_1	65.0743164901996	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683669	100696500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745
ENSMUSG00000034165.17_47906993_47910614_1	chr17	+	1526	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	0	-595	0	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47906992	47910614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034165.17_47908089_47910614_1	chr17	+	1451	4	NIC	ENSMUSG00000034165.17	novel	336	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	139	junction_1	1894.33911078948	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47908088	47910614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_47908162_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034175.14_5049273_5056093_2	chr11	+	1988	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	347	-2	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049272	5056093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5049433_5056093_2	chr11	+	1828	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	507	-2	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049432	5056093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034187.19_103713419_103844850_1	chr11	-	2923	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	32	811	0	332	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATAATTTACAAGCCT	NA	False	NA	-48	True	NA	NA	NA	103844850	103713418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ENSMUSG00000034203.9_91441258_91450431_1	chr6	-	1271	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2104	0	-2104	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATGGCTTTTTTTTC	NA	False	NA	-1	True	ATTAAA	-21	NA	91450431	91441257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034203.9_91441604_91450431_1	chr6	-	925	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2450	0	-2450	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAAGAGTGGGTCCATTC	NA	False	NA	-4	True	AGTAAA	-16	NA	91450431	91441603	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034203.9_91441804_91450431_1	chr6	-	725	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2650	0	-2650	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCACTCCTGGATGTACTA	NA	False	NA	NA	False	CATAAA	-18	NA	91450431	91441803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034211.15_129792598_129795354_1	chr5	+	611	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	31	190	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795354_2	chr5	+	758	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	37	4266	0	0	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795354_4	chr5	+	531	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_129792614_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_1	chr5	+	949	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	37	4075	0	1	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_2	chr5	+	722	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_129792614_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_3	chr5	+	933	4	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	44	junction_2	350.330637477734	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_129792614_129792747_129792959_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_5	chr5	+	1765	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	23	394	0	1	multi-exon	FALSE	canonical	3	460	junction_1	221	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129792614_129792747_129793931_129794979
ENSMUSG00000034259.9_76211665_76213960_1	chr15	+	815	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	913	0	665	multi-exon	FALSE	canonical	3	25	junction_1	318	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTTACTGTACAGCA	947	False	NA	13	True	AATAAA	-19	NA	76211664	76213960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76211868_76213229_76213437_76213555
ENSMUSG00000034263.14_64868187_64893990_1	chr9	+	2550	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	0	270	0	0	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACTCCTAAGAAGCAAT	NA	False	NA	NA	False	AATATA	-18	NA	64868186	64893990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ENSMUSG00000034285.16_4823999_4843654_1	chr11	+	1332	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	48	546	0	37	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAGTCGTGACAGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	4823998	4843654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034311.4_99669724_99770820_1	chrX	+	4602	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	381	0	381	0	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669723	99770820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
ENSMUSG00000034321.15_41911402_41921746_1	chr19	-	1632	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-11	-603	-9	603	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGTGCCTGTGGGTGAC	NA	False	NA	4	True	AATAAA	-34	NA	41921746	41911401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_41912005_41921746_1	chr19	-	940	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921746	41912004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034341.18_115969399_115977798_1	chr11	-	1668	7	FSM	ENSMUSG00000034341.18	ENSMUST00000106444.4	1012	7	23	-679	0	0	multi-exon	FALSE	canonical	3	34	junction_3	412.44046708451	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977798	115969398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ENSMUSG00000034343.15_91178059_91213290_1	chr1	+	888	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	457	0	-172	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTCTGCTTCCCTT	337	False	NA	NA	False	AATACA	-26	NA	91178058	91213290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213649_2	chr1	+	1247	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	98	0	0	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGCTTTAATTATTTT	337	False	NA	NA	False	NA	NA	NA	91178058	91213649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91214238_1	chr1	+	1836	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	-491	0	491	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGCCTGCCTAGCATT	337	False	NA	5	True	AATAAA	-17	NA	91178058	91214238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034345.15_6130112_6135109_1	chr17	+	511	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1683	0	-298	multi-exon	FALSE	canonical	3	932	junction_1	74.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTTTAGCTGCAATTTGG	1741	False	NA	31	True	ATTAAA	-21	NA	6130111	6135109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034345.15_6130112_6135407_1	chr17	+	809	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1385	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	1741	False	NA	29	True	ATTAAA	-33	NA	6130111	6135407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034349.15_68912324_68928733_1	chr3	+	1536	10	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	253	13223	0	0	5prime_fragment	FALSE	canonical	3	521	junction_3	56.5844719789431	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGTGTGTCAGTGATG	NA	False	NA	NA	False	AAGAAA	-6	NA	68912323	68928733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568
ENSMUSG00000034391.13_84952676_84999598_1	chr18	+	2141	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	-231	0	-231	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	569	False	NA	26	True	AATAAA	-15	NA	84952675	84999598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84952676_84999598_2	chr18	+	1714	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-231	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	245.728081423349	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	569	False	NA	26	True	AATAAA	-15	NA	84952675	84999598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_+_84952762_84953188_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84952784_84999598_1	chr18	+	2033	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	-123	0	-123	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	677	False	NA	26	True	AATAAA	-15	NA	84952783	84999598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84953153_84999598_1	chr18	+	1664	10	FSM	ENSMUSG00000034391.13	ENSMUST00000037718.10	1437	10	-130	-97	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	1046	False	NA	26	True	AATAAA	-15	NA	84953152	84999598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034403.17_98509720_98514294_1	chrX	-	1733	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	-1	376	-1	0	multi-exon	FALSE	canonical	3	92	junction_1	143.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514294	98509719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_98511189_98511728_98511921_98514222
ENSMUSG00000034403.17_98509720_98514294_2	chrX	-	2273	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	47	346	-1	0	multi-exon	FALSE	canonical	3	379	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514294	98509719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_98511921_98514222
ENSMUSG00000034424.6_117708711_117720276_1	chr8	-	1281	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	162	0	-162	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	1706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720276	117708710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
ENSMUSG00000034424.6_117708711_117720276_2	chr8	-	1201	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	0	-162	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720276	117708710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
ENSMUSG00000034432.12_90531221_90540846_1	chr1	+	1552	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	518	217	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90531220	90540846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUSG00000034432.12_90531221_90541063_1	chr1	+	1769	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	518	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90531220	90541063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUSG00000034442.12_73327255_73333513_1	chr12	-	1626	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	-30	470	-29	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCACACAGATATTTGTTA	NA	False	NA	-95	True	NA	NA	NA	73333513	73327254	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034442.12_73327255_73333513_2	chr12	-	974	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCACACAGATATTTGTTA	NA	False	NA	-95	True	NA	NA	NA	73333513	73327254	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034445.9_10554815_10567194_1	chr19	+	2852	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	279	-1	0	1	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTCTTTTGTTCAGAC	NA	False	NA	15	True	ATTAAA	-18	NA	10554814	10567194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034473.15_35133782_35184222_1	chr16	-	1645	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	66	2281	0	652	multi-exon	FALSE	canonical	3	72	junction_4	6.0736223860962	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTGGTCTTCCAAATT	NA	False	NA	-24	True	AATACA	-13	NA	35184222	35133781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
ENSMUSG00000034484.9_53309431_53353577_1	chr18	+	1664	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	43	360	0	-360	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGGGTTTTTTATA	NA	False	NA	NA	False	AATAAA	-20	NA	53309430	53353577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ENSMUSG00000034501.8_72583157_72588637_1	chr12	+	646	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	0	38256	0	-38256	5prime_fragment	FALSE	canonical	3	96	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGGGCTAGTGTGTGG	NA	False	NA	17	True	AATACA	-16	NA	72583156	72588637	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_72583314_72588148
ENSMUSG00000034501.8_72583157_72589005_1	chr12	+	1014	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	0	37888	0	-37888	5prime_fragment	FALSE	canonical	3	96	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGGGAGAGTTAGGTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	72583156	72589005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_72583314_72588148
ENSMUSG00000034544.18_66893018_67263891_1	chr3	+	1374	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	13	1837	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGTGTTGAAATAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	66893017	67263891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034544.18_66893018_67264291_1	chr3	+	1774	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	13	1437	0	399	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGATTTGTATCACGCGT	NA	False	NA	14	True	AATAAA	-20	NA	66893017	67264291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034560.7_83430140_83432337_1	chr10	+	1994	2	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	8483	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83430139	83432337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_83431746_83431949
ENSMUSG00000034617.8_68709482_68730240_1	chr13	-	3109	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	0	583	0	0	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730240	68709481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
ENSMUSG00000034620.18_121917165_121933075_2	chr10	-	1446	6	FSM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	201	3146	-14	0	multi-exon	FALSE	canonical	3	258	junction_5	21.4513402844671	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933075	121917164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034681.18_24633649_24644872_1	chr17	+	2229	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	913	False	NA	NA	False	AATAAA	-21	NA	24633648	24644872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034708.13_102321344_102327635_1	chr11	+	2137	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	196	-2	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATCTGATTTGTTGCGC	4334	False	NA	17	True	AATAAA	-19	NA	102321343	102327635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUSG00000034729.17_47679823_47689606_1	chr17	+	1248	9	NIC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	777.973127749282	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7148	False	NA	7	True	NA	NA	NA	47679822	47689606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_47679880_47680953_47681084_47681188_47681296_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_47679823_47689606_2	chr17	+	938	6	NIC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	652.177889842948	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7148	False	NA	7	True	NA	NA	NA	47679822	47689606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_47679880_47683351_47683417_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_47679823_47689606_3	chr17	+	1092	6	NIC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1493	junction_5	178.399103136759	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7148	False	NA	7	True	NA	NA	NA	47679822	47689606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_47679880_47683351_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034744.14_83772190_83779538_1	chr6	+	1179	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	226	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9484	False	NA	13	True	AATAAA	-21	NA	83772189	83779538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034748.17_81457621_81463400_1	chr10	-	1660	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	231	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9889	False	NA	-11	True	AATAAA	-25	NA	81463400	81457620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ENSMUSG00000034789.9_55467693_55468523_1	chr13	-	606	3	ISM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	1235	-5	-174	0	3prime_fragment	FALSE	canonical	3	549	junction_1	45	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	7677	False	NA	-17	True	AATAAA	-19	NA	55468523	55467692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_55468028_55468124_55468188_55468315
ENSMUSG00000034868.10_71281021_71297525_1	chr17	-	890	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	360	893	0	0	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTCTGGTTTTGCTGGA	3404	False	NA	-34	True	AATAAA	-37	NA	71297525	71281020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
ENSMUSG00000034875.6_35246610_35254735_1	chr7	-	1304	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	994	0	-116	0	multi-exon	FALSE	canonical	3	351	junction_1	2	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35254735	35246609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUSG00000034875.6_35246610_35254882_2	chr7	-	1451	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	847	0	-263	0	multi-exon	FALSE	canonical	3	351	junction_1	2	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35254882	35246609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUSG00000034875.6_35247237_35254735_1	chr7	-	677	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	994	627	-116	164	multi-exon	FALSE	canonical	3	351	junction_1	2	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCATGTGTGTTTTG	NA	False	NA	0	True	CATAAA	-19	NA	35254735	35247236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUSG00000034994.11_81012465_81018189_1	chr10	+	2946	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	143	0	-143	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	3784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGGTCCATGGCCAAGT	2181	False	NA	18	True	AATAAA	-15	NA	81012464	81018189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000035000.9_62161976_62242203_1	chr2	-	3337	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	372	1559	0	-1559	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	-3	True	AGTAAA	-20	NA	62242203	62161975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
ENSMUSG00000035048.14_102503495_102511441_1	chr9	+	406	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	183	0	0	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	885	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503494	102511441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_102503546_102506961_102507088_102511212
ENSMUSG00000035064.18_120442054_120502728_1	chr7	+	2635	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	3945	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCACTCTTGATAGCCTT	NA	False	NA	10	True	TATAAA	-20	NA	120442053	120502728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035064.18_120442054_120503224_1	chr7	+	3131	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	3449	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442053	120503224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035086.14_101179088_101193086_1	chr11	-	1987	12	NNC	ENSMUSG00000035086.14	novel	2123	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	179.909205751261	343	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185791_101185991_101186120_101186258_101186359_101186405_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035086.14_101179088_101193086_2	chr11	-	2029	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	26	2310	0	0	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035086.14_101179535_101193086_2	chr11	-	1582	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	26	2757	0	167	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAATCCACAAAAGCTAC	NA	False	NA	-8	True	ATTAAA	-33	NA	101193086	101179534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035105.6_54226443_54250646_1	chr12	-	1986	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	0	676	0	-676	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGTTCTTCCACATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	54250646	54226442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
ENSMUSG00000035142.19_52144520_52357735_1	chr12	+	1195	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	0	1792	0	-1792	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTGGCTGCTCTATG	NA	False	NA	3	True	AATAAA	-12	NA	52144519	52357735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
ENSMUSG00000035150.16_93234309_93256257_1	chrX	-	1593	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	58	1996	0	-1996	multi-exon	FALSE	canonical	3	1008	junction_2	64.9970120101527	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACCTCTACTTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	93256257	93234308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUSG00000035183.15_124910044_124930308_1	chr2	+	1665	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	0	289	0	-289	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTAACACTTAATTACT	NA	False	NA	5	True	AATAAA	-18	NA	124910043	124930308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
ENSMUSG00000035198.10_101010965_101017245_1	chr11	+	1601	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	201	0	201	0	multi-exon	FALSE	canonical	3	373	junction_8	104.461715475096	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1431	False	NA	16	True	AATAAA	-19	NA	101010964	101017245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUSG00000035199.7_97187756_97210276_1	chr6	+	1336	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	106	0	106	0	multi-exon	FALSE	canonical	3	281	junction_2	50	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8554	False	NA	10	True	AATAAA	-21	NA	97187755	97210276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUSG00000035202.9_123195992_123224383_1	chr9	+	1019	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	0	67346	0	0	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCCTTTAGGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	123195991	123224383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
ENSMUSG00000035212.15_101504915_101515705_1	chr4	+	1042	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	856	0	-856	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGCCCCCTGCTGTGA	8215	False	NA	NA	False	NA	NA	NA	101504914	101515705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUSG00000035212.15_101504915_101516561_1	chr4	+	974	5	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	259.519267107473	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034_101515195_101516118
ENSMUSG00000035215.10_80688655_80691044_1	chr10	-	945	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217781.2	646	3	-187	-112	-1	0	multi-exon	FALSE	canonical	3	4365	junction_1	93.5	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTCTGTAACTTTGATC	NA	False	NA	-9	True	AATAAA	-29	NA	80691044	80688654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80688935_80689591_80689664_80690451
ENSMUSG00000035227.8_99488111_99508073_2	chr7	-	1463	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	111	1335	-7	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	1871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508073	99488110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488111_99508184_1	chr7	-	1574	5	NNC	ENSMUSG00000035227.8	novel	2909	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1001.95518238093	2168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508184	99488110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_99489091_99493906_99494042_99497505_99497658_99498173_99498267_99507970
ENSMUSG00000035227.8_99488888_99508073_2	chr7	-	686	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	111	2112	-7	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508073	99488887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035242.16_80662516_80665004_1	chr10	+	907	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	3	460	junction_4	2987.93005272881	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664726
ENSMUSG00000035242.16_80662516_80665004_2	chr10	+	929	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	1100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665124_1	chr10	+	1043	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	233	junction_1	2913.0790733346	3209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662515	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664076_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665124_2	chr10	+	1123	4	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7082	junction_2	297.278021761149	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662515	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544
ENSMUSG00000035242.16_80662516_80665124_3	chr10	+	1049	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	4653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662515	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665124_4	chr10	+	1027	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	460	junction_4	2987.93005272881	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662515	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664726
ENSMUSG00000035278.10_80631933_80634074_1	chr10	-	874	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	386	0	-46	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_2	chr10	-	739	4	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_3	509.183878596153	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633914
ENSMUSG00000035278.10_80631933_80634074_3	chr10	-	951	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_5	chr10	-	838	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634394_1	chr10	-	1126	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	-266	-327	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000035278.10_80631933_80634394_3	chr10	-	1158	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634394_4	chr10	-	1194	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	66	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035297.15_100666323_100695646_1	chr5	+	1383	8	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_7	487.320872375749	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5421	False	NA	20	True	AATAAA	-22	NA	100666322	100695646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100695169
ENSMUSG00000035297.15_100666323_100695646_2	chr5	+	1504	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	442.714284273729	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5421	False	NA	20	True	AATAAA	-22	NA	100666322	100695646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_100666417_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035297.15_100666323_100695646_3	chr5	+	1499	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_8	455.54773007337	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5421	False	NA	20	True	AATAAA	-22	NA	100666322	100695646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100695169
ENSMUSG00000035297.15_100666323_100695646_4	chr5	+	1584	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	148	23	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5421	False	NA	20	True	AATAAA	-22	NA	100666322	100695646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035365.16_87927906_87982766_1	chr10	-	2589	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-26	-612	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	10.555093557141	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAAAATCCCCATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	87982766	87927905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
ENSMUSG00000035367.10_58550514_58557910_1	chr13	+	2366	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	437	1052	0	0	multi-exon	FALSE	canonical	3	159	junction_1	108.5	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAAAGAATGTTTATA	NA	False	NA	20	True	AATAAA	-33	NA	58550513	58557910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_58550604_58554815_58554905_58555723
ENSMUSG00000035376.11_34842798_34926895_1	chr16	+	946	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	0	2652	0	-2652	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGCCTGGGATTTTATA	NA	False	NA	17	True	NA	NA	NA	34842797	34926895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_1	chr16	+	998	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.173980601699	1560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_34843006_34846194_34846313_34895957_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_2	chr16	+	999	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	0	2599	0	-2599	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	1854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_5	chr16	+	980	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035378.18_100550043_100648102_1	chr6	-	1974	11	FSM	ENSMUSG00000035378.18	ENSMUST00000113312.9	6816	11	16	4826	-2	0	multi-exon	TRUE	canonical	3	185	junction_1	14.4027775099111	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648102	100550042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_100550750_100588696_100588813_100607838_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUSG00000035399.13_163247773_163261448_1	chr2	-	1589	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	31	0	0	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAACCCCTGCTGGTGCT	NA	False	NA	-35	True	NA	NA	NA	163261448	163247772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
ENSMUSG00000035439.14_71703239_71725150_1	chr8	-	2112	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	-130	-530	-28	530	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTTGGTCATGAAG	566	False	NA	-1	True	NA	NA	NA	71725150	71703238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_71703769_71725002_2	chr8	-	1357	11	NNC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	129.85010589137	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	714	False	NA	-9	True	NA	NA	NA	71725002	71703768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_71704189_71705714_71705819_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_71703769_71725150_1	chr8	-	1523	10	NIC	ENSMUSG00000035439.14	novel	1452	11	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	189.752730587552	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71724927
ENSMUSG00000035439.14_71703769_71725150_4	chr8	-	1582	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	-130	0	-28	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035443.11_26911016_26918632_1	chr9	+	941	8	NNC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	231.197945051245	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUSG00000035443.11_26911016_26918632_2	chr9	+	790	7	NNC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	220.761560663687	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035443.11_26911016_26918632_3	chr9	+	956	6	NIC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035473.11_80435100_80492531_1	chr17	+	2115	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	200	-1	200	1	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGACTCTTGTTCTTTTGT	NA	False	NA	12	True	AATAAA	-20	NA	80435099	80492531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
ENSMUSG00000035478.15_80228373_80231206_1	chr10	-	1244	5	ISM	ENSMUSG00000035478.15	ENSMUST00000105347.2	914	6	347	-443	-46	0	3prime_fragment	FALSE	canonical	3	1097	junction_1	94.3328548279972	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231206	80228372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897
ENSMUSG00000035478.15_80228373_80231206_2	chr10	-	1320	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	-202	0	-46	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231206	80228372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
ENSMUSG00000035478.15_80228373_80235256_1	chr10	-	1438	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	128	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235256	80228372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035478.15_80228373_80235256_2	chr10	-	1514	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235256	80228372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035505.15_90362583_90371625_1	chr5	-	1101	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	206	0	173	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371625	90362582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUSG00000035521.14_25453395_25459100_1	chr17	-	1140	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	-10	104	-2	-104	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	-19	True	AATAAA	-20	NA	25459100	25453394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUSG00000035530.14_100210812_100212360_1	chr11	+	659	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	562	101	1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	4270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4058	False	NA	0	True	AATAAA	-14	NA	100210811	100212360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_100210812_100212922_1	chr11	+	1221	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	0	101	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	6076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	4058	False	NA	21	True	AATAAA	-17	NA	100210811	100212922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_100211344_100212360_1	chr11	+	632	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	-185	0	1	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4590	False	NA	0	True	AATAAA	-14	NA	100211343	100212360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_100211344_100212922_1	chr11	+	1194	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	-747	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	4590	False	NA	21	True	AATAAA	-17	NA	100211343	100212922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUSG00000035559.10_71211295_71213592_1	chr8	-	1021	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
ENSMUSG00000035575.12_79825625_79853217_1	chr11	-	3032	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	-1	846	-1	-846	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	-8	True	AATAAA	-19	NA	79853217	79825624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUSG00000035578.17_32836990_32863833_1	chr16	-	1260	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6407	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	6127	False	NA	2	True	ATTAAA	-29	NA	32863833	32836989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
ENSMUSG00000035585.17_3696601_3704011_1	chr7	+	1516	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2012	False	NA	6	True	AATAAA	-16	NA	3696600	3704011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_3696865_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3696601_3704011_2	chr7	+	1540	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	227	12	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2012	False	NA	6	True	AATAAA	-16	NA	3696600	3704011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3696764_3704011_1	chr7	+	1377	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	390	12	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035596.15_3680788_3695887_1	chr7	-	2243	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	635	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	8028	False	NA	-2	True	AATAAA	-15	NA	3695887	3680787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ENSMUSG00000035597.20_65083108_65108929_1	chr12	+	2837	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	1	1231	0	0	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7508	False	NA	19	True	AATAAA	-16	NA	65083107	65108929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035601.10_45297155_45315333_1	chr4	+	1238	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	28	798	0	191	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTTAAGTAATTGCC	-8	True	NA	-42	True	GATAAA	-24	NA	45297154	45315333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035601.10_45297155_45315489_1	chr4	+	1394	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	28	642	0	347	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCGATTTCCACCAGCT	-8	True	NA	12	True	CATAAA	-21	NA	45297154	45315489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035637.15_44981403_44990734_1	chr4	+	1250	10	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	107.74455387113	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-23	True	NA	13	True	NA	NA	NA	44981402	44990734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376_44990602_44990623
ENSMUSG00000035674.14_3620372_3621228_1	chr7	+	648	2	ISM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	-13	1899	0	510	5prime_fragment	FALSE	canonical	3	2080	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	255	False	NA	NA	False	NA	NA	NA	3620371	3621228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_3620407_3620615
ENSMUSG00000035674.14_3620379_3623153_1	chr7	+	335	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	7	173	0	2	multi-exon	FALSE	canonical	3	2080	junction_1	661.918591839074	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCCACAATCTTTTCTT	262	False	NA	13	True	AATAAA	-15	NA	3620378	3623153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
ENSMUSG00000035674.14_3620379_3623153_2	chr7	+	414	4	NNC	ENSMUSG00000035674.14	novel	351	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1440.3567459333	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCCACAATCTTTTCTT	262	False	NA	13	True	AATAAA	-15	NA	3620378	3623153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_3620407_3620615_3620691_3622428_3622507_3622920
ENSMUSG00000035683.14_44300876_44364296_1	chr4	+	2576	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	379	0	-379	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	26	True	AATAAA	-27	NA	44300875	44364296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUSG00000035699.9_32294341_32306542_1	chr16	-	1444	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	155	1019	-21	0	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTGCTTCTGTTGGC	NA	False	NA	-8	True	AATAAA	-27	NA	32306542	32294340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
ENSMUSG00000035726.9_52397871_52434697_1	chr14	-	4497	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	176	0	176	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434697	52397870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ENSMUSG00000035754.9_79795989_79803526_1	chr10	+	1397	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	3	2511	0	81	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGCGCCTTGGTTGTTCT	2289	False	NA	31	True	ACTAAA	-19	NA	79795988	79803526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
ENSMUSG00000035754.9_79795989_79803526_2	chr10	+	1392	10	NNC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	81	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	532.846537099347	1194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGCGCCTTGGTTGTTCT	2289	False	NA	31	True	ACTAAA	-19	NA	79795988	79803526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_79796202_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
ENSMUSG00000035762.12_84370432_84443989_1	chr13	+	2573	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	13	271	0	0	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370431	84443989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035770.9_105145566_105169443_1	chr8	-	3137	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	236	1254	-67	-1254	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGTTTTTTTTGTTGTTG	2004	False	NA	-9	True	AATATA	-17	NA	105169443	105145565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ENSMUSG00000035770.9_105147139_105169443_1	chr8	-	1564	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	236	2827	-67	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGCACATGCTGTCAGT	2004	False	NA	-84	True	NA	NA	NA	105169443	105147138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ENSMUSG00000035772.12_28358094_28360644_1	chr2	+	1518	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	16	546	0	-533	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTCAAAAGTTTGTTCCA	NA	False	NA	23	True	NA	NA	NA	28358093	28360644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUSG00000035772.12_28358094_28360966_1	chr2	+	1840	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	16	224	0	-211	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCACAAGTATTTTATA	NA	False	NA	27	True	NA	NA	NA	28358093	28360966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUSG00000035772.12_28358094_28361177_1	chr2	+	2159	5	NNC	ENSMUSG00000035772.12	novel	2429	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	280.38321989734	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358093	28361177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_28358155_28358254_28358372_28358832_28358963_28359232_28359341_28359434
ENSMUSG00000035958.4_25015664_25025472_1	chr13	+	1291	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	2	664	0	-316	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTAACGTTTTACTTTG	NA	False	NA	22	True	AATAAA	-23	NA	25015663	25025472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUSG00000035960.15_51162435_51164596_1	chr14	+	1412	4	FSM	ENSMUSG00000035960.15	ENSMUST00000154288.3	935	4	0	-477	0	0	multi-exon	FALSE	canonical	3	1054	junction_2	68.6310587286997	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	189	False	NA	14	True	AATAAA	-15	NA	51162434	51164596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035960.15_51162435_51164596_2	chr14	+	1234	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	9	-588	0	0	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	189	False	NA	14	True	AATAAA	-15	NA	51162434	51164596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000036023.7_51045382_51058757_1	chr14	+	1798	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_5	194.893064696173	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052413_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_51045382_51058757_2	chr14	+	1877	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036036.16_37313446_37321524_1	chr17	+	1673	5	NNC	ENSMUSG00000036036.16	novel	1991	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1309.76543701535	463	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_2	chr17	+	1564	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1406.78256582174	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_37313514_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_3	chr17	+	1711	5	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	1391	0	0	0	3prime_fragment	FALSE	canonical	3	426	junction_1	1230.59345439507	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_4	chr17	+	1682	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	790	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313562_37321524_2	chr17	+	1604	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	145	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313561	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036073.18_41755507_41758695_1	chr4	+	1316	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	279	0	-251	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	14	False	NA	32	True	AATAAA	-33	NA	41755506	41758695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_41755507_41758695_2	chr4	+	1439	10	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-251	0	intron_retention	FALSE	canonical	2	43	junction_2	87.4838962253364	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	14	False	NA	32	True	AATAAA	-33	NA	41755506	41758695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036078.17_41738493_41741186_1	chr4	-	1467	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	173	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3920	False	NA	NA	False	AATAAA	-17	NA	41741186	41738492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ENSMUSG00000036078.17_41738493_41741330_1	chr4	-	1564	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	-7	True	NA	NA	False	AATAAA	-17	NA	41741330	41738492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
ENSMUSG00000036086.17_127914847_128030200_1	chr1	-	2044	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030200	127914846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ENSMUSG00000036112.16_93696790_93725524_1	chr10	-	1833	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	152	2439	-48	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	False	NA	-16	True	AATAAA	-16	NA	93725524	93696789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUSG00000036112.16_93696790_93725670_1	chr10	-	1979	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	6	2439	0	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	False	NA	-16	True	AATAAA	-16	NA	93725670	93696789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUSG00000036112.16_93697194_93725670_1	chr10	-	1575	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	6	2843	0	249	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACGTCTTTATTTTCTA	NA	False	NA	0	True	ATTAAA	-18	NA	93725670	93697193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUSG00000036120.11_70585916_70591906_1	chr8	-	1251	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	-102	2460	-102	0	multi-exon	TRUE	canonical	3	42	junction_5	11.7626261948597	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9443	False	NA	2	True	AATAAA	-18	NA	70591906	70585915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036138.17_119170523_119179365_1	chr9	+	1599	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	163	0	0	0	multi-exon	FALSE	canonical	3	245	junction_2	23.8777880116768	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7891	False	NA	28	True	AGTAAA	-19	NA	119170522	119179365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUSG00000036160.14_26780784_26792891_1	chr2	-	2634	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	337	0	0	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGTGTTCGTATTTG	NA	False	NA	-6	True	NA	NA	NA	26792891	26780783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
ENSMUSG00000036199.10_70346830_70354298_1	chr8	-	489	4	ISM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	910	0	910	0	3prime_fragment	FALSE	canonical	3	6124	junction_2	115.905133622286	2716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTCTATAGTGACTC	NA	False	NA	-20	True	AATAAA	-17	NA	70354298	70346829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000036208.14_44544664_44557468_1	chr16	+	2687	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	179	0	-179	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCCATTACTCAAATG	NA	False	NA	8	True	ATTAAA	-16	NA	44544663	44557468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036223.17_74329848_74340850_1	chr18	-	1114	7	NNC	ENSMUSG00000036223.17	novel	2630	7	NA	NA	0	-298	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
ENSMUSG00000036223.17_74329848_74340850_2	chr18	-	1088	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	39	1478	0	-298	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
ENSMUSG00000036241.4_41136025_41191293_1	chr4	+	1231	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	282	2087	282	257	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAATAAAAATAAAAA	-7	True	NA	NA	False	NA	NA	NA	41136024	41191293	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
ENSMUSG00000036241.4_41136025_41191616_1	chr4	+	1554	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	282	1764	282	580	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGCACTTGGTTGCTATT	-7	True	NA	32	True	AATAAA	-21	NA	41136024	41191616	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
ENSMUSG00000036299.6_75138971_75143005_1	chr18	+	1048	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	218	0	1	multi-exon	FALSE	canonical	3	388	junction_1	205.5	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGCTTTTTGTCTTTT	NA	False	NA	27	True	ATTAAA	-18	NA	75138970	75143005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75139186_75141721_75141898_75142348
ENSMUSG00000036299.6_75138971_75143005_2	chr18	+	834	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	31	-341	0	1	multi-exon	FALSE	canonical	3	91	junction_1	354	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGCTTTTTGTCTTTT	NA	False	NA	27	True	ATTAAA	-18	NA	75138970	75143005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75138972_75141721_75141898_75142348
ENSMUSG00000036309.15_52122864_52137076_1	chr11	+	803	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	609	0	197	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATTTTGGGCTTTCCC	439	False	NA	-22	True	AATAAA	-27	NA	52122863	52137076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036309.15_52122864_52137501_1	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	3936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	14	True	ATTAAA	-17	NA	52122863	52137501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036323.15_77122554_77146315_1	chr5	+	2132	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	24	1469	0	127	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCATAGTCCTGAAATGA	NA	False	NA	27	True	AATAAA	-37	NA	77122553	77146315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
ENSMUSG00000036323.15_77122554_77147262_1	chr5	+	3079	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	24	522	0	-522	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTTGAAACTTCTCCA	NA	False	NA	19	True	AATAAA	-21	NA	77122553	77147262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
ENSMUSG00000036371.7_67243995_67261050_1	chr6	+	1417	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	387	13670	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	1967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261050_2	chr6	+	1372	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	245	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	2736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261050_3	chr6	+	1399	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	28	240	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261298_1	chr6	+	1602	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	1	-267	0	3	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	3734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	5872	False	NA	40	True	AATATA	-28	NA	67243994	67261298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261298_2	chr6	+	1665	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	387	13422	0	3	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	4069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	5872	False	NA	40	True	AATATA	-28	NA	67243994	67261298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036372.15_10181582_10185182_1	chr19	+	396	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	204	6	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	2293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
ENSMUSG00000036376.4_23605713_23608046_1	chr13	-	1284	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	-10	3182	-10	-3182	multi-exon	FALSE	canonical	3	221	junction_1	5.5	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	-21	True	AATAAA	-17	NA	23608046	23605712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_23606506_23606652_23606853_23607755
ENSMUSG00000036398.14_37260182_37262392_1	chr17	-	452	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	213	934	-162	0	multi-exon	FALSE	canonical	3	708	junction_2	5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262392	37260181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036398.14_37260182_37262605_1	chr17	-	665	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	934	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262605	37260181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036402.14_66873440_66994931_1	chr6	+	659	3	NNC	ENSMUSG00000036402.14	novel	680	5	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTATATTCTGTTCTTAA	NA	False	NA	21	True	ATTAAA	-27	NA	66873439	66994931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_66873500_66992716_66992832_66994447
ENSMUSG00000036402.14_66873440_66994931_2	chr6	+	786	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	59	3403	0	18	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTATATTCTGTTCTTAA	NA	False	NA	21	True	ATTAAA	-27	NA	66873439	66994931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995141_4	chr6	+	943	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	33	-228	0	11	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATGAAAGAACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	66873439	66995141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995262_1	chr6	+	1064	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	33	-349	0	5	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAAAACTGAAAGCCCTT	NA	False	NA	6	True	AATAAA	-22	NA	66873439	66995262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036427.6_33901584_33929722_1	chr7	-	2016	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	39	829	-8	0	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	-41	True	AATAAA	-16	NA	33929722	33901583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUSG00000036503.14_57643541_57742252_3	chr3	+	2220	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	58	400	0	-288	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643540	57742252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUSG00000036504.7_25463442_25464890_1	chr2	-	466	2	NIC	ENSMUSG00000036504.7	novel	937	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5546	False	NA	-8	True	ATTAAA	-20	NA	25464890	25463441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_25463712_25464694
ENSMUSG00000036504.7_25463442_25464890_2	chr2	-	591	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	346	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5546	False	NA	-8	True	ATTAAA	-20	NA	25464890	25463441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25463712_25464199_25464325_25464694
ENSMUSG00000036513.16_57553780_57559129_1	chr3	-	975	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	7	2010	0	0	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
ENSMUSG00000036533.10_79641882_79662520_1	chr17	-	1539	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	726	0	-726	multi-exon	FALSE	canonical	3	71	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAGGAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	79662520	79641881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_79643146_79662245
ENSMUSG00000036534.7_96562548_96580150_1	chr8	-	3275	13	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.7773749669282	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580150	96562547	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_96563104_96563130_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ENSMUSG00000036550.17_96446784_96466539_1	chr8	-	2686	16	ISM	ENSMUSG00000036550.17	ENSMUST00000211887.2	8364	49	67553	698	-90	0	3prime_fragment	FALSE	canonical	3	1077	junction_10	231.11084401694	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCTGAAACTTCTTG	NA	False	NA	-18	True	AATATA	-13	NA	96466539	96446783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435
ENSMUSG00000036552.20_15280222_15284485_1	chr17	+	783	3	ISM	ENSMUSG00000036552.20	ENSMUST00000228803.2	1271	6	3209	7	506	0	3prime_fragment	FALSE	canonical	3	59	junction_2	18.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15280221	15284485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_15280247_15281330_15281445_15283841
ENSMUSG00000036572.17_36355331_36373975_1	chrX	-	2383	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUSG00000036613.9_28801838_28917490_1	chr12	+	1681	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	36	2374	0	0	multi-exon	FALSE	canonical	3	234	junction_3	17.1641887370187	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1134	False	NA	7	True	NA	NA	NA	28801837	28917490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUSG00000036617.18_20524444_20673043_1	chr2	+	934	4	NNC	ENSMUSG00000036617.18	novel	3074	4	NA	NA	-158	5916	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	82.3097132110718	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCCTTGGTTGTGATG	4638	False	NA	NA	False	NA	NA	NA	20524443	20673043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20672887
ENSMUSG00000036632.10_54642980_54656858_1	chr3	+	1093	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	20	358	0	-358	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGTATATTCTTG	NA	False	NA	21	True	AATAAA	-25	NA	54642979	54656858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUSG00000036639.13_140317709_140323892_1	chr5	+	937	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317708	140323892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036672.6_106571309_106578640_1	chr8	-	1825	14	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	76.1652672088405	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578640	106571308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106572854_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000036721.15_21547002_21553994_1	chr13	+	1928	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	12	2465	0	0	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21547001	21553994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
ENSMUSG00000036748.17_46318985_46327080_1	chr19	-	1279	9	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	140	junction_8	337.659499348086	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751
ENSMUSG00000036748.17_46318985_46327080_10	chr19	-	1146	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_5	400.615575715889	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ENSMUSG00000036748.17_46318985_46327080_11	chr19	-	1131	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_9	404.731033992383	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326860_46327007
ENSMUSG00000036748.17_46318985_46327080_12	chr19	-	1190	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	89	junction_9	397.279576278966	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326870_46326958
ENSMUSG00000036748.17_46318985_46327080_2	chr19	-	1122	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	122	junction_9	391.163632837104	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326851_46327007
ENSMUSG00000036748.17_46318985_46327080_3	chr19	-	1188	10	FSM	ENSMUSG00000036748.17	ENSMUST00000167861.8	1941	10	19	734	-3	0	multi-exon	FALSE	canonical	3	50	junction_9	353.322781114268	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46327007
ENSMUSG00000036748.17_46318985_46327080_4	chr19	-	1247	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	344.205723727706	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
ENSMUSG00000036748.17_46318985_46327080_5	chr19	-	812	9	NNC	ENSMUSG00000036748.17	novel	1833	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	383.15205858771	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_46319006_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036748.17_46318985_46327080_6	chr19	-	1180	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	390.981102129275	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326860_46326958
ENSMUSG00000036748.17_46318985_46327080_7	chr19	-	1336	9	ISM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	-17	2	-3	0	intron_retention	FALSE	canonical	3	415	junction_8	247.19526694498	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751
ENSMUSG00000036748.17_46318985_46327080_8	chr19	-	1237	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ENSMUSG00000036748.17_46318985_46327080_9	chr19	-	1077	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	-21	734	-3	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5841	False	NA	-8	True	AGTAAA	-13	NA	46327080	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUSG00000036751.8_30316399_30325539_1	chr7	-	468	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	37	113	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	2397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
ENSMUSG00000036764.13_63222350_63244606_1	chr10	+	1268	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	8	1749	0	0	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGCATTTAGGATGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	63222349	63244606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
ENSMUSG00000036775.14_26300204_26309194_1	chr17	-	2088	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	117	19	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26309194	26300203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ENSMUSG00000036782.14_23085525_23185144_1	chrX	-	3311	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3726	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185144	23085524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ENSMUSG00000036782.14_23085525_23227934_1	chrX	-	3220	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	15	3358	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227934	23085524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ENSMUSG00000036810.17_88845397_88858315_1	chr8	+	1364	6	NIC	ENSMUSG00000036810.17	novel	1731	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_5	70.6070817977914	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTTTATT	NA	False	NA	17	True	NA	NA	NA	88845396	88858315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857363
ENSMUSG00000036817.15_139186422_139220569_1	chr5	+	1463	13	ISM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	30	15026	0	271	5prime_fragment	FALSE	canonical	3	426	junction_7	211.809203975863	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGCCCACCTCCAAAGGT	NA	False	NA	NA	False	NA	NA	NA	139186421	139220569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441
ENSMUSG00000036817.15_139186422_139220569_2	chr5	+	1271	12	ISM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	-13	13735	0	271	5prime_fragment	FALSE	canonical	3	224	junction_6	242.022640836939	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGCCCACCTCCAAAGGT	NA	False	NA	NA	False	NA	NA	NA	139186421	139220569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441
ENSMUSG00000036817.15_139227742_139235550_1	chr5	+	1796	5	ISM	ENSMUSG00000036817.15	ENSMUST00000110882.8	2454	19	29960	-1152	633	0	3prime_fragment	FALSE	canonical	3	873	junction_4	41.2492424172857	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	9985	False	NA	-12	True	AATAAA	-21	NA	139227741	139235550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036835.8_30261288_30262666_1	chr7	-	659	4	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	381.68660792156	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	1290	False	NA	-3	True	AATAAA	-19	NA	30262666	30261287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_30261560_30261748_30261854_30262220_30262313_30262476
ENSMUSG00000036854.15_30251949_30254865_1	chr7	+	2104	3	FSM	ENSMUSG00000106236.3_ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	-744	3	0	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGCCTTATGTCTGGGC	NA	False	NA	9	True	AATAAA	-17	NA	30251948	30254865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30252958_30253686_30253810_30253893
ENSMUSG00000036860.15_59093331_59096714_1	chr11	+	395	2	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093330	59096714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_59093486_59096474
ENSMUSG00000036860.15_59093331_59096714_2	chr11	+	681	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	13	246	0	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093330	59096714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUSG00000036860.15_59093331_59096714_3	chr11	+	597	3	NIC	ENSMUSG00000036860.15	novel	792	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093330	59096714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_59093486_59095381_59095584_59096474
ENSMUSG00000036873.14_145643797_145650032_1	chr3	+	1094	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	550	0	35	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
ENSMUSG00000036873.14_145643797_145650032_2	chr3	+	967	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	28	552	0	35	multi-exon	FALSE	canonical	3	242	junction_2	10.5	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145644084_145644652_145644852_145649551
ENSMUSG00000036873.14_145643797_145650032_3	chr3	+	1002	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	-243	-35	0	35	multi-exon	FALSE	canonical	3	74	junction_2	94.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145644084_145644652_145644852_145649516
ENSMUSG00000036880.11_74912268_74939279_1	chr18	+	2073	9	NIC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	191	junction_7	16.7779617355625	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUSG00000036932.15_47563821_47602303_1	chrX	-	2100	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	137	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602303	47563820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUSG00000036968.16_138185747_138191905_1	chr5	+	1580	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	275	0	-275	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTGAGTCCCATTTCAA	5598	False	NA	16	True	ATTAAA	-16	NA	138185746	138191905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ENSMUSG00000036975.6_119837440_119840938_1	chr1	-	1521	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	0	1820	0	-1820	multi-exon	FALSE	canonical	3	113	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCTCTGAATTCCAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	119840938	119837439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_119838885_119840862
ENSMUSG00000036977.9_80438449_80501979_1	chr8	+	783	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438448	80501979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438449_80501979_2	chr8	+	831	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	1970	0	8	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438448	80501979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438480_80501979_1	chr8	+	930	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438479	80501979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438480_80501979_2	chr8	+	882	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	3709	0	8	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438479	80501979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036980.14_138176879_138185488_1	chr5	-	2390	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
ENSMUSG00000036980.14_138176879_138185488_2	chr5	-	2411	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_14	167.30713843536	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
ENSMUSG00000037013.18_14758686_14815823_1	chr18	-	2944	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	148	6	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815823	14758685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUSG00000037022.4_79994537_80021566_1	chr8	-	1340	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	0	4310	0	0	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021566	79994536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
ENSMUSG00000037031.11_62023146_62067030_1	chr10	-	1667	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	0	1971	0	342	multi-exon	TRUE	canonical	3	242	junction_7	11.6303613925986	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTCTTTTATTTGTGTT	4876	False	NA	-12	True	AATAAA	-15	NA	62067030	62023145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
ENSMUSG00000037058.17_35731694_35749481_1	chr18	+	693	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	24	758	0	39	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGTCACACAATTACT	4664	False	NA	18	True	AATAAA	-25	NA	35731693	35749481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUSG00000037058.17_35731694_35749600_1	chr18	+	812	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	24	639	0	28	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATTGTCTGTCTTTGAG	4664	False	NA	9	True	ATTAAA	-17	NA	35731693	35749600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUSG00000037071.4_44386207_44396148_1	chr19	-	1519	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	0	3313	0	225	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGTTTTGAGGTAATAAA	-4	True	NA	-8	True	TATAAA	-16	NA	44396148	44386206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
ENSMUSG00000037071.4_44386207_44396318_1	chr19	-	1689	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	-170	3313	0	225	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGTTTTGAGGTAATAAA	7270	False	NA	-8	True	TATAAA	-16	NA	44396318	44386206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
ENSMUSG00000037072.17_144276475_144303441_1	chr3	+	1226	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	288	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	1533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276474	144303441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUSG00000037089.12_45874874_45878774_1	chr17	+	2010	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	74	-178	0	177	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAACACCCAACCCTGC	NA	False	NA	NA	False	NA	NA	NA	45874873	45878774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUSG00000037149.11_13269308_13299174_1	chr12	-	2468	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	40	2334	-10	-2334	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	-11	True	AATAAA	-14	NA	13299174	13269307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ENSMUSG00000037152.12_51312899_51316385_1	chr3	-	424	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	24	801	0	0	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	1815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGACGGAGTCACTGG	NA	False	NA	-32	True	AATAAA	-18	NA	51316385	51312898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
ENSMUSG00000037171.7_61254067_61261117_1	chr10	+	1779	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	316	0	316	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61254066	61261117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61254275_61258760_61259477_61260262
ENSMUSG00000037188.8_135269199_135275809_1	chr4	-	1037	3	ISM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	25132	0	25132	0	3prime_fragment	FALSE	canonical	3	271	junction_1	2	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135275809	135269198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_135270085_135273553_135273619_135275723
ENSMUSG00000037190.13_107416774_107419064_1	chr9	-	1218	3	FSM	ENSMUSG00000037190.13	ENSMUST00000041459.9	1786	3	0	568	0	0	multi-exon	FALSE	canonical	3	104	junction_2	5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419064	107416773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107417585_107418201_107418240_107418695
ENSMUSG00000037197.12_11590250_11601488_1	chr2	-	1046	9	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	6585	2	-5819	0	3prime_fragment	FALSE	canonical	3	1239	junction_6	100.601239430735	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTCTCTGGTTGTTT	3548	False	NA	-26	True	TATAAA	-16	NA	11601488	11590249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439
ENSMUSG00000037236.17_35695270_35724476_1	chr18	+	3791	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	59	2412	0	4	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	36	True	AATAAA	-12	NA	35695269	35724476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037236.17_35695270_35724476_2	chr18	+	2698	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	-2	-842	0	4	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	36	True	AATAAA	-12	NA	35695269	35724476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037242.9_134942752_135000125_1	chr4	-	2647	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	1472	0	-1472	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTGACTCATGGCAGC	NA	False	NA	-8	True	AATAAA	-17	NA	135000125	134942751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUSG00000037251.6_26471453_26484161_1	chr8	-	2792	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	821	0	-821	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26484161	26471452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
ENSMUSG00000037257.9_63509942_63549176_1	chr9	+	2600	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	2694	0	1566	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTAATGTGTTTTGTT	9214	False	NA	NA	False	ATTAAA	-19	NA	63509941	63549176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUSG00000037262.8_10085404_10097512_1	chr2	+	1398	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-31	105	0	-105	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4794	False	NA	NA	False	AATAAA	-24	NA	10085403	10097512	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
ENSMUSG00000037266.19_134650937_134654683_1	chr4	+	2718	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	34	299	0	0	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650936	134654683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
ENSMUSG00000037266.19_134652635_134654683_1	chr4	+	1937	2	ISM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	1732	299	-122	0	3prime_fragment	FALSE	canonical	3	913	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134652634	134654683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_134654130_134654241
ENSMUSG00000037296.8_26275316_26292565_1	chr8	+	1225	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	0	1438	0	413	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTCTGGTGGAGAGT	8440	False	NA	24	True	AATAAA	-27	NA	26275315	26292565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
ENSMUSG00000037296.8_26275587_26292565_1	chr8	+	954	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	271	1438	0	413	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTCTGGTGGAGAGT	8711	False	NA	24	True	AATAAA	-27	NA	26275586	26292565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
ENSMUSG00000037313.17_33815930_33829545_1	chr5	+	2319	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	256.734636286941	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815929	33829545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUSG00000037313.17_33815930_33829545_2	chr5	+	2386	14	ISM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	-3	0	0	intron_retention	FALSE	canonical	3	792	junction_7	85.2006333837612	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815929	33829545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
ENSMUSG00000037316.10_26257222_26275233_1	chr8	-	2138	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	82	2656	-7	2317	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGGACATTCTTTG	NA	False	NA	1	True	NA	NA	NA	26275233	26257221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ENSMUSG00000037351.10_36738283_36749028_1	chr1	-	2099	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	61	1088	0	-1088	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGGTGTGTGGCTCTGA	NA	False	NA	-19	True	TATAAA	-26	NA	36749028	36738282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ENSMUSG00000037361.9_4867561_4877266_1	chr12	+	770	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	17	393	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	1316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4867560	4877266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
ENSMUSG00000037458.16_38490038_38519510_1	chr15	-	2504	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	2367	0	-1553	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTTTTCAGGCTAAAAC	NA	False	NA	-6	True	AATAAA	-18	NA	38519510	38490037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000037466.14_113120041_113122418_1	chr12	+	926	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	1209	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	38	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113120040	113122418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
ENSMUSG00000037474.14_191269602_191307625_1	chr1	-	4056	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	31	125	0	-125	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTAAGATGGCTTGGGTT	NA	False	NA	-5	True	AATAAA	-25	NA	191307625	191269601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUSG00000037474.14_191270960_191307625_1	chr1	-	2698	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	31	1483	0	257	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTGTGTGTGTGTG	NA	False	NA	0	True	AATATA	-17	NA	191307625	191270959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUSG00000037475.16_40916060_41000778_1	chrX	-	2787	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	0	32192	0	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000778	40916059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUSG00000037486.19_3476912_3547062_1	chr12	+	2234	11	NNC	ENSMUSG00000037486.19	novel	1483	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.8989539520038	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGCTTTCCTATATTTA	NA	False	NA	NA	False	AATAAA	-22	NA	3476911	3547062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_3477213_3492473_3492561_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
ENSMUSG00000037531.9_32781724_32790905_1	chr3	-	795	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	391	2178	391	0	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCATTGTTCTTAAAGCC	NA	False	NA	-89	True	NA	NA	NA	32790905	32781723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ENSMUSG00000037544.15_47625236_47655657_1	chr14	-	2757	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	207	0	0	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655657	47625235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037563.16_28050188_28052121_1	chr7	+	539	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	111	459	0	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	16094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUSG00000037600.17_133246394_133258099_1	chr4	+	1876	4	NIC	ENSMUSG00000037600.17	novel	2256	3	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCTGCCTGGTCATCAG	5591	False	NA	7	True	NA	NA	NA	133246393	133258099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
ENSMUSG00000037601.12_93849751_93859098_1	chr11	-	986	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	1946	0	547	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	2861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGCCCAGGCCTGT	634	False	NA	-4	True	AATAAA	-14	NA	93859098	93849750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037601.12_93850058_93859098_1	chr11	-	679	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	2253	0	240	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	2542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATTGCTGTACAGCT	634	False	NA	-16	True	ATTAAA	-15	NA	93859098	93850057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037608.17_20188215_20216010_1	chr10	+	3070	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	2237	0	1	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2790	False	NA	10	True	AATAAA	-18	NA	20188214	20216010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ENSMUSG00000037608.17_20188215_20216010_2	chr10	+	3217	13	FSM	ENSMUSG00000037608.17	ENSMUST00000043881.12	5437	13	-15	2235	0	1	multi-exon	FALSE	canonical	3	695	junction_11	110.864375352149	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2790	False	NA	10	True	AATAAA	-18	NA	20188214	20216010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ENSMUSG00000037628.11_46998043_47008978_1	chr14	+	724	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	45	148	0	1	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998042	47008978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ENSMUSG00000037661.15_30910099_30951339_1	chr3	+	1975	4	NIC	ENSMUSG00000037661.15	novel	2213	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
ENSMUSG00000037661.15_30910099_30951339_2	chr3	+	1787	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	-43	-1398	0	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
ENSMUSG00000037669.16_8258145_8334281_2	chr12	+	1233	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	0	202	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACTGGCCCAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	8258144	8334281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037669.16_8258145_8335759_1	chr12	+	2711	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258144	8335759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037710.9_71166310_71180679_1	chr10	-	979	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	105	0	105	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	1304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1358	False	NA	7	True	AATAAA	-27	NA	71180679	71166309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037710.9_71166552_71180679_1	chr10	-	737	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	105	242	105	-242	multi-exon	FALSE	canonical	3	1606	junction_1	82	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	1358	False	NA	-28	True	ATTAAA	-15	NA	71180679	71166551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037710.9_71166552_71180784_1	chr10	-	842	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	242	0	-242	multi-exon	FALSE	canonical	3	1606	junction_1	82	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	1253	False	NA	-28	True	ATTAAA	-15	NA	71180784	71166551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037712.18_45697209_45767575_1	chr14	-	2336	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	957	0	-957	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTATCATGATACCTT	NA	False	NA	0	True	AATAAA	-17	NA	45767575	45697208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUSG00000037720.17_67418039_67443872_1	chr5	+	1184	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	131	4932	0	-130	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTGAAATTTGTTTTA	NA	False	NA	14	True	AATACA	-18	NA	67418038	67443872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037720.17_67418039_67445101_1	chr5	+	2413	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	131	3703	0	1099	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACTGATTTCTAATGATG	NA	False	NA	15	True	AATAAA	-22	NA	67418038	67445101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037720.17_67418039_67445101_2	chr5	+	1620	9	FSM	ENSMUSG00000037720.17	ENSMUST00000160352.8	5322	9	-1	3703	0	1099	multi-exon	FALSE	canonical	3	67	junction_8	122.604483502847	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACTGATTTCTAATGATG	NA	False	NA	15	True	AATAAA	-22	NA	67418038	67445101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
ENSMUSG00000037720.17_67418097_67443872_1	chr5	+	1283	7	FSM	ENSMUSG00000037720.17	ENSMUST00000161369.3	6164	7	-51	4932	0	-130	multi-exon	FALSE	canonical	3	385	junction_4	35.264476932649	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTGAAATTTGTTTTA	NA	False	NA	14	True	AATACA	-18	NA	67418096	67443872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037722.9_45614908_45626250_1	chr14	-	1503	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	168	1117	0	703	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	-1	True	ATTAAA	-30	NA	45626250	45614907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037722.9_45614908_45626418_1	chr14	-	1487	6	NNC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	0	703	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	472.912930675405	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	-1	True	ATTAAA	-30	NA	45626418	45614907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626388
ENSMUSG00000037722.9_45615482_45626250_1	chr14	-	929	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	168	1691	0	129	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGAATAAGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	45626250	45615481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037725.9_22658461_22675510_1	chr8	-	2277	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	325	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22675510	22658460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
ENSMUSG00000037725.9_22658461_22675835_1	chr8	-	2308	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	285	0	0	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22675835	22658460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ENSMUSG00000037740.9_130405662_130407314_1	chr2	+	977	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	0	3301	0	0	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
ENSMUSG00000037742.15_78385810_78389006_1	chr9	-	1715	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	79	0	-79	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	46376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTTAATGGAAACAACT	7100	False	NA	23	True	NA	NA	NA	78389006	78385809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ENSMUSG00000037787.15_111679714_111700437_1	chr12	+	829	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	19	217	0	-217	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTGGTGAGATGGCT	1560	False	NA	9	True	NA	NA	NA	111679713	111700437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUSG00000037805.16_28547558_28550006_1	chr17	+	2044	4	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5715	junction_1	1410.70297684838	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_28547593_28547784_28547860_28547940_28549672_28549803
ENSMUSG00000037805.16_28547558_28550006_2	chr17	+	1123	4	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5482	junction_2	1331.5841025719	2240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_28547593_28547784_28548497_28549498_28549672_28549803
ENSMUSG00000037805.16_28547558_28550006_3	chr17	+	797	5	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5482	junction_3	1374.50982171827	11783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_28547593_28547784_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037808.14_13739031_13756587_1	chr9	+	2433	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	19	1250	0	-1250	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTGCTTATGTCTGAATA	NA	False	NA	6	True	ATTAAA	-18	NA	13739030	13756587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
ENSMUSG00000037822.13_65607146_65650285_1	chr5	-	1143	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	458	2959	-61	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650285	65607145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037822.13_65607146_65650403_1	chr5	-	1261	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	340	2959	0	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037846.19_67815545_67878346_1	chr10	+	2464	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	0	-218	0	218	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAATCTGCTATTCAAA	NA	False	NA	26	True	ATTAAA	-23	NA	67815544	67878346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
ENSMUSG00000037847.15_18609314_18629558_1	chr19	+	1684	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	10	junction_9	24.9493313698478	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGGTAGGTTTTACTT	NA	False	NA	NA	False	AAAAAG	-3	NA	18609313	18629558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599_18629145_18629166
ENSMUSG00000037857.17_77576981_77601599_1	chr11	+	3190	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	0	1968	0	-1968	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATGAAAACTGTCTTGT	NA	False	NA	NA	False	AAAAAG	-10	NA	77576980	77601599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
ENSMUSG00000037860.16_173248164_173293272_1	chr1	+	2213	9	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	69719	334	0	-326	3prime_fragment	FALSE	canonical	3	62	junction_1	21.7884000100971	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173248163	173293272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_173248164_173293272_2	chr1	+	2073	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	0	-326	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	29.5379382475888	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173248163	173293272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037894.14_137570352_137572683_1	chr3	+	965	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	104	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	11641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUSG00000037905.14_125518632_125532159_1	chr5	+	1198	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	5275	0	369	multi-exon	FALSE	canonical	3	373	junction_1	23.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	29	True	AATAAA	-21	NA	125518631	125532159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUSG00000037905.14_125518814_125532159_1	chr5	+	1016	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	182	5275	0	369	multi-exon	FALSE	canonical	3	373	junction_1	23.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	29	True	AATAAA	-21	NA	125518813	125532159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUSG00000037916.15_4057503_4062665_1	chr19	-	1514	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	141	6	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037935.17_99099873_99121272_1	chr11	-	2348	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	571	0	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121272	99099872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_99100818_99121272_1	chr11	-	1298	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121272	99100817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_99100818_99121272_2	chr11	-	1403	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	571	945	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121272	99100817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037938.5_128971724_128975400_1	chr2	+	567	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	104	654	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAGAAGAGCGATGAGA	3929	False	NA	40	True	AATAAA	-44	NA	128971723	128975400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUSG00000037938.5_128971724_128976054_1	chr2	+	1221	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	104	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3929	False	NA	45	True	NA	NA	NA	128971723	128976054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUSG00000037958.14_76936270_76969261_1	chr11	-	1962	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	1152	0	-1152	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGAGTTTTTTTGGTT	NA	False	NA	-1	True	AATAAA	-18	NA	76969261	76936269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
ENSMUSG00000037971.11_50675030_50679460_1	chr9	-	888	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	292	902	0	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAAAAAAATCTCTATT	NA	False	NA	NA	False	AATAAA	-10	NA	50679460	50675029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
ENSMUSG00000038000.11_106424790_106427717_1	chr8	-	1366	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_8	60.9681155286196	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427717	106424789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
ENSMUSG00000038000.11_106424790_106427717_2	chr8	-	1528	11	ISM	ENSMUSG00000038000.11	ENSMUST00000211870.2	2722	12	0	2298	0	0	5prime_fragment	FALSE	canonical	3	32	junction_7	55.0807588909231	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427717	106424789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000038000.11_106424790_106427717_3	chr8	-	1416	11	FSM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	-1	1739	0	0	multi-exon	FALSE	canonical	3	179	junction_7	13.7637204272682	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427717	106424789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000038005.16_61343485_61360609_1	chr8	+	737	5	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	382.667610335654	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_61343571_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUSG00000038005.16_61343485_61360609_2	chr8	+	586	4	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
ENSMUSG00000038005.16_61343485_61360609_3	chr8	+	1253	9	NNC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	365.929211050443	1159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61359405_61359473_61360370
ENSMUSG00000038007.15_86848928_86850857_1	chr4	+	741	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	0	2202	0	129	multi-exon	FALSE	canonical	3	467	junction_1	0	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGGTGTGGTTCAAGA	4120	False	NA	22	True	NA	NA	NA	86848927	86850857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_86849080_86850268
ENSMUSG00000038028.10_127063047_127086513_1	chr6	-	2683	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	968	0	-968	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAATGGTTAGGCTGCCTC	NA	False	NA	-20	True	ATTAAA	-16	NA	127086513	127063046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038028.10_127064433_127086513_1	chr6	-	1297	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	2354	0	411	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTGTTCAGAGTGAAGC	NA	False	NA	-10	True	AAGAAA	-39	NA	127086513	127064432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038028.10_127064499_127086547_1	chr6	-	1265	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	-34	2420	-27	345	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCGCTCACCAAGTGCTT	NA	False	NA	-12	True	NA	NA	NA	127086547	127064498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038034.16_172139934_172147404_1	chr1	+	2434	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	4	0	2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3743	False	NA	15	True	AATAAA	-15	NA	172139933	172147404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
ENSMUSG00000038045.15_79192326_79202529_1	chr17	-	1130	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
ENSMUSG00000038079.15_59139749_59158965_1	chr1	-	1828	12	NNC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	59.5276170368229	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4340	False	NA	-10	True	AATAAA	-24	NA	59158965	59139748	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157124_59157166_59158861
ENSMUSG00000038084.17_29398210_29470697_1	chr16	+	3167	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	58	3005	0	0	multi-exon	TRUE	canonical	3	145	junction_5	76.2263931339013	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398209	29470697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_29398210_29470697_2	chr16	+	3278	30	NIC	ENSMUSG00000038084.17	novel	4017	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398209	29470697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038095.16_124531013_124563647_1	chr5	-	2512	18	ISM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	26	24242	0	0	5prime_fragment	TRUE	canonical	3	126	junction_15	113.969157486276	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563647	124531012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
ENSMUSG00000038102.16_47943163_47958778_1	chr8	-	2069	11	ISM	ENSMUSG00000038102.16	ENSMUST00000123958.8	3932	23	19274	0	5605	0	3prime_fragment	TRUE	canonical	3	114	junction_2	18.0930926046378	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCGTAAATACCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	47958778	47943162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620
ENSMUSG00000038116.17_156038562_156134465_1	chr2	+	1838	11	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	0	17407	0	17	5prime_fragment	FALSE	canonical	3	289	junction_1	26.5510828404417	245	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACCAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	156038561	156134465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
ENSMUSG00000038116.17_156038674_156134465_1	chr2	+	1726	11	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	112	17407	0	17	5prime_fragment	FALSE	canonical	3	289	junction_1	26.5510828404417	250	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACCAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	156038673	156134465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
ENSMUSG00000038116.17_156038674_156134465_2	chr2	+	1641	10	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	0	17	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	98.616478727154	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACCAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	156038673	156134465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
ENSMUSG00000038116.17_156038674_156134465_3	chr2	+	1706	11	NNC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	98.1965376171686	254	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACCAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	156038673	156134465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109094_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
ENSMUSG00000038121.7_68400727_68433275_1	chr18	-	2053	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	129	7469	-2	-7469	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACTGCTTGTAATTCAA	NA	False	NA	NA	False	NA	NA	NA	68433275	68400726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000038121.7_68401257_68433275_1	chr18	-	1523	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	129	7999	-2	7731	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCTTTTAAAGTGGTTT	NA	False	NA	NA	False	TATAAA	-27	NA	68433275	68401256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000038141.12_6320745_6356064_1	chr17	+	1885	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	0	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	216.5692369082	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	AATAAA	-35	NA	6320744	6356064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353587_6354523_6354611_6354851_6354919_6355643
ENSMUSG00000038141.12_6320745_6358589_1	chr17	+	1782	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353587_6354523_6354611_6354851_6354919_6358271
ENSMUSG00000038150.8_98472082_98478071_1	chr11	-	2061	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	123	0	123	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1446	False	NA	1	True	AATAAA	-23	NA	98478071	98472081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ENSMUSG00000038155.12_4090287_4092237_1	chr19	-	995	6	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	26	2	-19	0	intron_retention	FALSE	canonical	3	1402	junction_5	871.235766024329	1687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902
ENSMUSG00000038155.12_4090287_4092237_2	chr19	-	935	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	intron_retention	FALSE	canonical	3	1174	junction_5	1038.62948157656	1611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038155.12_4090287_4095992_1	chr19	-	870	8	NIC	ENSMUSG00000038155.12	novel	509	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4095992	4090286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
ENSMUSG00000038160.8_44144411_44239635_2	chr10	+	1643	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	57	652	0	-652	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATACAGTTTGTCACTT	NA	False	NA	15	True	AATAAA	-27	NA	44144410	44239635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUSG00000038160.8_44144411_44240292_1	chr10	+	2205	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	44144410	44240292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
ENSMUSG00000038187.15_112914853_112968599_1	chr7	-	2456	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968599	112914852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
ENSMUSG00000038206.14_57004144_57045324_1	chr8	+	1902	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	19	1650	0	-104	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTGAGAATATAAAAATGT	NA	False	NA	8	True	AATAAA	-21	NA	57004143	57045324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ENSMUSG00000038217.14_75358905_75361725_1	chr11	+	1472	6	NNC	ENSMUSG00000038217.14	novel	1112	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	14.7295621116176	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360860_75360882_75360933_75361330
ENSMUSG00000038217.14_75358905_75361725_2	chr11	+	1893	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	0	0	0	0	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
ENSMUSG00000038225.16_47031632_47070217_1	chr8	-	2073	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	26	-266	0	266	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATGCCTGGTGATGACT	NA	False	NA	-4	True	ATTAAA	-19	NA	47070217	47031631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038235.5_171265147_171291578_1	chr1	+	1868	9	NIC	ENSMUSG00000038235.5	novel	2518	10	NA	NA	0	365	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	81.7212296468916	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTTTGTTGAACATG	NA	False	NA	15	True	AATAAA	-17	NA	171265146	171291578	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290456_171290509_171290626
ENSMUSG00000038279.11_125108872_125121716_1	chr6	+	2623	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	267.552229584348	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ENSMUSG00000038286.12_34221615_34258057_1	chr13	+	1051	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221614	34258057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUSG00000038299.17_32970364_32999086_1	chr18	+	2808	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	86	1561	0	-367	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGCCAAGTGTGCTG	9050	False	NA	13	True	AATAAA	-24	NA	32970363	32999086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ENSMUSG00000038312.11_155543947_155571395_1	chr2	-	1940	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	0	350	0	-350	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTTTTACATGCTGGAT	NA	False	NA	-11	True	AATAAA	-15	NA	155571395	155543946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
ENSMUSG00000038344.15_161571913_161612450_1	chrX	-	2673	5	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	9998	0	0	5prime_fragment	FALSE	canonical	3	191	junction_2	21.2132034355964	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTATGTCTCATCTCCAA	NA	False	NA	-6	True	AATAAA	-17	NA	161612450	161571912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUSG00000038354.14_96592313_96598350_1	chr3	+	635	5	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14670	-25	4904	2	3prime_fragment	FALSE	canonical	3	58	junction_4	19.7294196569489	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTGTGGTTTTTGTC	NA	False	NA	18	True	AATAAA	-18	NA	96592312	96598350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ENSMUSG00000038374.11_96537256_96539216_1	chr3	+	713	6	FSM	ENSMUSG00000038374.11	ENSMUST00000196456.5	2604	6	0	1891	0	0	multi-exon	FALSE	canonical	3	2213	junction_2	872.428931202995	3782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATTACTTTACTGTTC	8642	False	NA	16	True	AATAAA	-20	NA	96537255	96539216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
ENSMUSG00000038374.11_96537256_96540223_1	chr3	+	1582	7	NNC	ENSMUSG00000038374.11	novel	2604	6	NA	NA	0	-884	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1674.23017135239	3914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGGCCCTTCTCTTC	8642	False	NA	6	True	ATTAAA	-18	NA	96537255	96540223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004_96539844_96539981
ENSMUSG00000038388.15_50087363_50175404_1	chr6	+	1864	13	FSM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	134	163	0	0	multi-exon	FALSE	canonical	3	978	junction_6	79.6350617225576	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50087362	50175404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUSG00000038393.15_96465624_96469182_1	chr3	+	2459	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	351	17	348	8	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	28	True	AATAAA	-23	NA	96465623	96469182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038398.9_13835645_13848723_1	chr8	+	1557	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	30	470	0	-470	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTTTTTTGTTTTTGTT	NA	False	NA	12	True	AATAAA	-25	NA	13835644	13848723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038412.9_121677629_121686678_1	chr9	-	1482	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	750	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	1027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121686678	121677628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
ENSMUSG00000038425.19_70641758_70663341_1	chr18	-	2298	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTAGGCTCTCACTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	70663341	70641757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
ENSMUSG00000038462.4_30724435_30729345_1	chr13	-	1219	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	144	0	-144	multi-exon	FALSE	canonical	3	2063	junction_1	0	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGTTCTCATCTAAATT	NA	False	NA	-15	True	AATAAA	-19	NA	30729345	30724434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_30725325_30729016
ENSMUSG00000038489.9_141053025_141055045_1	chr7	-	398	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	0	1252	0	-1252	multi-exon	FALSE	canonical	3	1072	junction_1	0	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	8000	False	NA	-13	True	AGTAAA	-37	NA	141055045	141053024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141053318_141054940
ENSMUSG00000038489.9_141053025_141055273_1	chr7	-	365	2	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	-228	-1252	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	0	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	7772	False	NA	-13	True	AGTAAA	-37	NA	141055273	141053024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_141053318_141055201
ENSMUSG00000038500.16_36283433_36290191_1	chr17	-	1861	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	22.0056810846654	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290191	36283432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
ENSMUSG00000038503.16_83541208_83548384_1	chr7	+	2136	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	0	2356	0	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541207	83548384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038503.16_83541470_83548384_1	chr7	+	1874	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	262	2356	-68	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541469	83548384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038510.13_40099242_40122999_1	chr10	-	1444	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	33	-181	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGGCTTTTTACCCA	6590	False	NA	85	True	NA	NA	NA	40122999	40099241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038510.13_40099679_40122999_1	chr10	-	1007	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	33	256	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTCGGTTTCCTGAT	6590	False	NA	-4	True	ACTAAA	-18	NA	40122999	40099678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038515.11_13226922_13250590_1	chr8	-	1223	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	30	1760	-3	0	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTCCATTTTTTCCTA	3667	False	NA	-21	True	TTTAAA	-18	NA	13250590	13226921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ENSMUSG00000038520.16_44490457_44498314_1	chr7	-	2155	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	185	6410	0	0	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCTGGCTGGCATCAG	7888	False	NA	-11	True	AATAAA	-14	NA	44498314	44490456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ENSMUSG00000038525.17_21851015_21866616_1	chr5	+	1007	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	138	1076	0	2	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTTGCTCCTATTTTTAT	NA	False	NA	4	True	AATAAA	-14	NA	21851014	21866616	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038525.17_21851015_21867606_1	chr5	+	1997	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	138	86	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTTCTTCCCCCACTG	NA	False	NA	19	True	AATAAA	-21	NA	21851014	21867606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038534.20_96956594_96959730_1	chr11	+	1595	6	ISM	ENSMUSG00000038534.20	ENSMUST00000168565.2	3535	24	14948	0	-1115	0	3prime_fragment	FALSE	canonical	3	70	junction_1	34.0141147172758	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96956593	96959730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038534.20_96958063_96959730_1	chr11	+	1326	4	ISM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	354	-633	354	0	3prime_fragment	FALSE	canonical	3	130	junction_3	12.5521135891752	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96958062	96959730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038542.15_13127189_13154833_1	chr8	-	2229	14	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	84.1979915149282	160	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13154833	13127188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147607_13147669_13148562_13148637_13150324_13150415_13154774
ENSMUSG00000038542.15_13127518_13154833_1	chr8	-	1900	14	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-2	-329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	84.1979915149282	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAGTTAGTCTAATGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	13154833	13127517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147607_13147669_13148562_13148637_13150324_13150415_13154774
ENSMUSG00000038544.15_59771666_59783866_2	chr4	-	1208	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	2029	0	-369	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGACTAAATACTGTT	-28	True	NA	NA	False	AATAAA	-23	NA	59783866	59771665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUSG00000038544.15_59774230_59783866_1	chr4	-	1540	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	-28	142	0	-142	multi-exon	FALSE	canonical	3	236	junction_2	17	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGGTTATTCAGTTTG	-28	True	NA	-3	True	NA	NA	NA	59783866	59774229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_59775550_59782253_59782335_59783727
ENSMUSG00000038550.11_95785815_95789386_1	chr3	-	1443	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	52.0292225580971	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789386	95785814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266
ENSMUSG00000038563.15_82297822_82308234_1	chr7	+	1084	5	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	60.1139542868376	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297821	82308234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82307474
ENSMUSG00000038607.13_59035231_59041888_1	chr4	+	1034	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	143	15	143	-15	multi-exon	FALSE	canonical	3	257	junction_2	16.5	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCATGACAGCAGTAGT	19	True	NA	20	True	AATAAA	-20	NA	59035230	59041888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUSG00000038612.17_95567011_95569252_1	chr3	+	1544	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	843	-1118	843	1118	3prime_fragment	FALSE	canonical	3	754	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGCCAAGCTTTGTTTT	7329	False	NA	36	True	AATAAA	-27	NA	95567010	95569252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_95567320_95568017
ENSMUSG00000038619.13_95532322_95537803_1	chr3	+	628	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1610	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	225.514411956309	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	400	False	NA	21	True	NA	NA	NA	95532321	95537803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537697
ENSMUSG00000038619.13_95532322_95537803_2	chr3	+	2244	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	-9	1610	0	-1610	multi-exon	FALSE	canonical	3	422	junction_2	58	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	400	False	NA	21	True	NA	NA	NA	95532321	95537803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95532488_95534059_95534186_95535851
ENSMUSG00000038628.9_181506153_181510403_1	chr2	+	705	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	2220	0	-2220	multi-exon	FALSE	canonical	3	712	junction_2	38.5	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGTTTTCTCTGTGTAG	8919	False	NA	17	True	AATAAA	-28	NA	181506152	181510403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038628.9_181506153_181510741_1	chr2	+	1043	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	1882	0	-1882	multi-exon	FALSE	canonical	3	712	junction_2	38.5	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAAAGTCTGGAATTAC	8919	False	NA	NA	False	TATAAA	-16	NA	181506152	181510741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038628.9_181506153_181511444_1	chr2	+	1746	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	1179	0	-1179	multi-exon	FALSE	canonical	3	712	junction_2	38.5	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCCTCAGTTCTTGT	8919	False	NA	5	True	ATTAAA	-18	NA	181506152	181511444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038633.6_182103533_182110369_1	chr1	-	1852	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	196	0	-196	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	-9	True	NA	NA	NA	182110369	182103532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUSG00000038633.6_182103959_182110369_1	chr1	-	1426	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	622	0	-622	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTAATAATATTCATTG	NA	False	NA	-1	True	AATAAA	-18	NA	182110369	182103958	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUSG00000038646.14_81412673_81418351_1	chr7	+	564	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	888	0	-877	multi-exon	FALSE	canonical	3	441	junction_1	195	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAAATGCTTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	81412672	81418351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUSG00000038646.14_81412673_81418613_1	chr7	+	826	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	626	0	-615	multi-exon	FALSE	canonical	3	441	junction_1	195	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTTTTGCTGTATGA	NA	False	NA	NA	False	AATAAA	-16	NA	81412672	81418613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUSG00000038650.16_140740241_140748636_1	chr7	-	1588	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	503	0	-34	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140748636	140740240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
ENSMUSG00000038671.16_181000283_181007117_2	chr2	-	1710	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	80	657	-4	-605	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	6156	False	NA	-6	True	AATAAA	-27	NA	181007117	181000282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000038671.16_181001108_181007117_2	chr2	-	872	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6156	False	NA	NA	False	NA	NA	NA	181007117	181001107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
ENSMUSG00000038671.16_181001108_181007117_3	chr2	-	885	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	80	1482	-4	0	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6156	False	NA	NA	False	NA	NA	NA	181007117	181001107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000038683.17_41154736_41166491_1	chr13	+	1485	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	237	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154735	41166491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ENSMUSG00000038690.16_145120516_145128352_1	chr5	-	427	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	520	8	-14	0	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	3953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
ENSMUSG00000038736.11_44238625_44291250_1	chr15	-	2992	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	19	2066	0	842	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTAGTGATGTTTGTT	NA	False	NA	-7	True	AATAAA	-18	NA	44291250	44238624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ENSMUSG00000038736.11_44239467_44291250_1	chr15	-	2150	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	19	2908	0	0	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	False	NA	71	True	AATAAA	-19	NA	44291250	44239466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ENSMUSG00000038742.8_20785104_20789371_1	chr9	-	929	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1652	0	1652	0	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789371	20785103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ENSMUSG00000038742.8_20785104_20789522_1	chr9	-	1080	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1501	0	1501	0	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789522	20785103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ENSMUSG00000038762.16_36272889_36280653_1	chr17	-	800	9	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	5178	0	-296	5prime_fragment	FALSE	canonical	3	825	junction_3	70.9954884129971	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAACAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	36280653	36272888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038762.16_36272889_36280653_2	chr17	-	884	8	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	0	-296	intron_retention	FALSE	canonical	3	825	junction_2	69.2499171148108	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAACAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	36280653	36272888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038803.8_31063862_31065069_1	chr5	-	448	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	63	633	0	0	multi-exon	FALSE	canonical	3	823	junction_2	132.5	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31064111_31064742_31064881_31065008
ENSMUSG00000038806.8_180678692_180688764_1	chr1	+	668	5	ISM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	6914	0	-5054	5prime_fragment	FALSE	canonical	3	433	junction_2	47.0604664235279	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGAAATGCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	180678691	180688764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662
ENSMUSG00000038806.8_180678692_180693938_1	chr1	+	1473	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	1740	0	120	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGTTCTAACTAGTCTCT	NA	False	NA	NA	False	ACTAAA	-18	NA	180678691	180693938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUSG00000038812.17_6887521_6888396_1	chr19	+	579	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	406	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	23.6971634495683	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9720	False	NA	16	True	ATTAAA	-16	NA	6887520	6888396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUSG00000038816.15_56811490_56846092_1	chr4	-	2836	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	0	-555	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGGATTTAAACCTTTT	-16	True	NA	-4	True	AATAAA	-19	NA	56846092	56811489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
ENSMUSG00000038816.15_56826003_56846092_1	chr4	-	1660	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGGATTTCCTACTGA	-16	True	NA	NA	False	AATAAA	-18	NA	56846092	56826002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
ENSMUSG00000038827.12_56802349_56806462_1	chr4	+	1136	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	3139	0	515	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACAGTTTCTCATTGGC	0	True	NA	1	True	AAAACA	-19	NA	56802348	56806462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038838.16_35967282_35978484_1	chr17	-	3669	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	0	756	0	0	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACGCAAGTGTGAGCCT	1761	False	NA	-8	True	GATAAA	-13	NA	35978484	35967281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
ENSMUSG00000038845.12_95557836_95570863_1	chr11	+	1010	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	53	736	0	329	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	3050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557835	95570863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038871.6_34453291_34482057_1	chr6	+	1580	3	FSM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	149	491	0	-491	multi-exon	FALSE	canonical	3	82	junction_2	7.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACACGCGCAAGGTGCC	NA	False	NA	10	True	AATAAA	-15	NA	34453290	34482057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_34453358_34464224_34464886_34481205
ENSMUSG00000038876.13_29222172_29238043_1	chr10	-	1928	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	395	2000	0	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237979
ENSMUSG00000038876.13_29222172_29238043_2	chr10	-	1989	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	0	-1208	0	0	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
ENSMUSG00000038876.13_29222429_29238043_1	chr10	-	1691	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	257	0	225	multi-exon	FALSE	canonical	3	93	junction_2	66.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATATCATTATGA	NA	False	NA	-19	True	AATAAA	-16	NA	29238043	29222428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237959
ENSMUSG00000038880.14_25114109_25115263_1	chr17	+	1072	2	FSM	ENSMUSG00000038880.14	ENSMUST00000138648.2	899	2	0	-173	0	0	multi-exon	FALSE	canonical	3	669	junction_1	0	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114108	25115263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25114679_25114761
ENSMUSG00000038900.18_32851732_32854057_1	chr2	+	1217	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2580	junction_4	1523.82780769351	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_2	chr2	+	1060	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_3	chr2	+	839	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2580	junction_5	1584.70918467711	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_4	chr2	+	543	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_4	2444.52437909709	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_5	chr2	+	1181	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	310	junction_1	2525.09163398083	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_6	chr2	+	630	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	161	451	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	19926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_7	chr2	+	1338	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
ENSMUSG00000038900.18_32851732_32854508_1	chr2	+	1081	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	161	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	20071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	5802	False	NA	24	True	AATAAA	-25	NA	32851731	32854508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038909.17_95165085_95201028_1	chr11	-	3409	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201028	95165084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUSG00000038936.14_179495825_179514394_1	chr1	+	1538	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	50	360	0	4	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATATCTCAGCTGTTTT	NA	False	NA	19	True	ATTAAA	-30	NA	179495824	179514394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUSG00000038936.14_179495825_179514754_1	chr1	+	1898	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	50	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495824	179514754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUSG00000038943.17_79944221_79966002_1	chr7	+	2963	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944220	79966002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
ENSMUSG00000038957.14_57615850_57656261_1	chr9	+	2160	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	27	3521	0	-2425	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGTGTGTCTCTGCTTC	NA	False	NA	NA	False	NA	NA	NA	57615849	57656261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ENSMUSG00000038957.14_57615850_57657446_2	chr9	+	3345	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	27	2336	0	-1240	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCTAGAGTGAAGTG	NA	False	NA	16	True	AATAAA	-26	NA	57615849	57657446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ENSMUSG00000038965.18_16970840_17019337_1	chr16	-	1629	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	19	961	0	-658	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTCTGTCAAGATTTGA	NA	False	NA	-19	True	AATAAA	-27	NA	17019337	16970839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_16971789_17019337_1	chr16	-	680	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	19	1910	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	17019337	16971788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038975.15_153612926_153618592_1	chr3	-	1425	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_153612926_153618592_2	chr3	-	1445	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153612926_153618592_3	chr3	-	1311	9	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	355	junction_5	287.890359989702	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_153612926_153618592_4	chr3	-	1409	10	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_153612926_153618592_5	chr3	-	1347	9	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153612926_153618592_6	chr3	-	2310	9	FSM	ENSMUSG00000065463.3_ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	-874	-165	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_153613091_153618592_1	chr3	-	1162	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	54	165	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_153613091_153618592_2	chr3	-	1182	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153613091_153618592_3	chr3	-	1244	10	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_153613091_153618592_4	chr3	-	1260	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000039001.13_179899211_179900238_1	chr2	+	526	5	NIC	ENSMUSG00000039001.13	novel	394	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3954	junction_4	1482.42763314099	10647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899210	179900238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUSG00000039001.13_179899211_179900238_2	chr2	+	374	6	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	2882.90848970272	10930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899210	179900238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_179899241_179899392_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUSG00000039041.16_179813388_179818076_1	chr2	+	1422	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	110	3	0	1	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGGTCTGGGCCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	179813387	179818076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
ENSMUSG00000039047.18_152419750_152491290_1	chr3	+	1351	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	13	3373	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAAACATAATATTGTT	3970	False	NA	12	True	AAGAAA	-33	NA	152419749	152491290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUSG00000039047.18_152419750_152491485_1	chr3	+	1546	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	13	3178	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGTTTGTGTGTGCTGTC	3970	False	NA	33	True	AGTAAA	-37	NA	152419749	152491485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUSG00000039048.16_35115504_35122242_1	chr9	-	2180	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	109	0	0	0	multi-exon	TRUE	canonical	3	179	junction_9	18.9747200242849	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122242	35115503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUSG00000039055.5_94535822_94544545_1	chr11	-	2199	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	245	0	-48	0	multi-exon	TRUE	canonical	3	178	junction_8	32.4422563950167	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4648	False	NA	-5	True	AATAAA	-18	NA	94544545	94535821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ENSMUSG00000039067.6_108307470_108315090_1	chr8	-	1118	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	6	457	0	-457	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTGTGCCACTAGGAGG	NA	False	NA	0	True	ATTAAA	-16	NA	108315090	108307469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ENSMUSG00000039069.20_179712381_179714777_1	chr2	+	1219	2	ISM	ENSMUSG00000039069.20	ENSMUST00000142608.8	2339	5	-4	7623	0	-7623	5prime_fragment	FALSE	canonical	3	114	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCCACAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	179712380	179714777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_179712409_179713586
ENSMUSG00000039105.7_63463009_63468464_1	chr4	+	612	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	523	0	-523	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAGGACCCTTCA	NA	False	NA	33	True	ATTAAA	-12	NA	63463008	63468464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUSG00000039128.14_5799476_5849662_1	chr2	-	1143	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	313	371	0	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	1176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849662	5799475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_1	chr2	-	1251	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	205	371	-18	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_2	chr2	-	1218	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	1509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5814366_5849770_1	chr2	-	1004	8	NIC	ENSMUSG00000039128.14	novel	600	7	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	373.173538445478	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	NA	False	NA	2	True	AATACA	-18	NA	5849770	5814365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039131.16_151799478_151871557_1	chr3	-	1284	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	310	2	-170	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGTGGGTATTTTTC	NA	False	NA	NA	False	CATAAA	-15	NA	151871557	151799477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUSG00000039148.6_5430087_5433288_1	chr19	-	1272	11	ISM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	5443	2536	-14	0	3prime_fragment	FALSE	canonical	3	368	junction_1	55.6600395256777	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTTGTGCTGCTGTC	NA	False	NA	-8	True	AATAAA	-19	NA	5433288	5430086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182
ENSMUSG00000039163.11_117894163_117979231_1	chr9	-	582	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	14	573	0	0	multi-exon	FALSE	canonical	3	173	junction_1	9.03081145609604	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGAGTTCTGATTTAT	NA	False	NA	-7	True	AATAAA	-13	NA	117979231	117894162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUSG00000039168.16_31224601_31274487_1	chr15	+	1414	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	141	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	132	False	NA	21	True	AATAAA	-21	NA	31224600	31274487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUSG00000039182.7_14804862_14812788_2	chr13	+	1992	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	29	893	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804861	14812788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_14804950_14810884
ENSMUSG00000039183.7_25101593_25105289_2	chr17	-	1404	7	FSM	ENSMUSG00000039183.7	ENSMUST00000235055.2	950	7	23	-477	0	0	multi-exon	FALSE	canonical	3	41	junction_5	246.619646419339	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105289	25101592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104609_25104692_25104812_25105252
ENSMUSG00000039194.17_79024618_79036461_1	chr7	-	1807	9	FSM	ENSMUSG00000039194.17	ENSMUST00000179243.3	2142	9	335	0	-108	0	multi-exon	FALSE	canonical	3	11	junction_8	4.45638586749397	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTTTCATGATGAACTT	NA	False	NA	-15	True	AATAAA	-22	NA	79036461	79024617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
ENSMUSG00000039197.11_21102679_21376861_1	chr14	+	953	8	NIC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	129.691313258421	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTCTTCCCAACTA	NA	False	NA	NA	False	ATTAAA	-16	NA	21102678	21376861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
ENSMUSG00000039200.17_10010811_10060915_1	chr16	+	2543	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	235	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010810	10060915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUSG00000039201.11_8020722_8042163_1	chrX	-	2380	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	257	11	-33	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	NA	False	NA	-18	True	NA	NA	NA	8042163	8020721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUSG00000039209.13_9988090_9992494_1	chr16	+	526	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	-2	281	0	0	multi-exon	FALSE	canonical	3	487	junction_1	5	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_9988189_9988278_9988356_9992144
ENSMUSG00000039218.18_24022195_24029003_1	chr17	+	783	5	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	34	14707	0	1	5prime_fragment	FALSE	canonical	3	209	junction_1	15.9275704361965	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGATAGAGGACGGTA	NA	False	NA	46	True	NA	NA	NA	24022194	24029003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ENSMUSG00000039218.18_24022601_24029003_1	chr17	+	976	5	NNC	ENSMUSG00000039218.18	novel	459	3	NA	NA	393	1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	96.5673340213967	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGATAGAGGACGGTA	NA	False	NA	46	True	NA	NA	NA	24022600	24029003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_24022972_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ENSMUSG00000039231.19_7927674_7940858_1	chrX	-	2711	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	141	264	2	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	6994	False	NA	NA	False	NA	NA	NA	7940858	7927673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
ENSMUSG00000039233.13_14192821_14214167_1	chr13	-	1913	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	35	-1039	-3	1039	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTTGGTCATGGTGT	NA	False	NA	2	True	NA	NA	NA	14214167	14192820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039242.11_14129210_14173659_1	chr13	+	3736	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	156	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129209	14173659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ENSMUSG00000039246.9_185820077_185849485_1	chr1	-	1407	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	22	149	0	-149	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTGACTTTCAGATTTA	NA	False	NA	-11	True	AATAAA	-15	NA	185849485	185820076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUSG00000039246.9_185820077_185849485_2	chr1	-	1237	4	FSM	ENSMUSG00000039246.9	ENSMUST00000195481.2	584	4	0	-653	0	-149	multi-exon	FALSE	canonical	3	17	junction_2	56.8174464598878	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTGACTTTCAGATTTA	NA	False	NA	-11	True	AATAAA	-15	NA	185849485	185820076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_185820966_185821640_185821757_185846460_185846561_185849353
ENSMUSG00000039323.19_72863006_72891633_1	chr1	+	895	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-656	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	527	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	634	False	NA	18	True	AATAAA	-3	NA	72863005	72891633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039323.19_72863866_72891633_1	chr1	+	1103	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	204	0	204	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	1494	False	NA	18	True	AATAAA	-3	NA	72863865	72891633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039323.19_72864022_72891633_1	chr1	+	947	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	360	0	360	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	114	False	NA	18	True	AATAAA	-3	NA	72864021	72891633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039323.19_72888312_72891633_1	chr1	+	778	3	FSM	ENSMUSG00000039323.19	ENSMUST00000155703.2	906	3	454	-326	454	0	multi-exon	FALSE	canonical	3	3391	junction_1	173	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	NA	False	NA	18	True	AATAAA	-3	NA	72888311	72891633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72888472_72888722_72888864_72891156
ENSMUSG00000039329.9_121036983_121039145_1	chr11	+	1858	2	FSM	ENSMUSG00000039329.9	ENSMUST00000155694.2	406	2	0	-1452	0	0	multi-exon	FALSE	canonical	3	732	junction_1	0	1568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036982	121039145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_121037049_121037353
ENSMUSG00000039345.17_8288655_8308065_1	chr16	+	1339	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	3	483	0	5	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	8	True	AATAAA	-17	NA	8288654	8308065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039345.17_8288655_8308065_2	chr16	+	1298	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	8	True	AATAAA	-17	NA	8288654	8308065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039382.13_7588487_7594246_2	chrX	+	1379	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	31	199	0	2	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTTTTGTGACTGGAGT	4037	False	NA	15	True	AATAAA	-17	NA	7588486	7594246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_7588596_7594427_2	chrX	+	1451	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	140	18	0	6	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGACTTGACCTCAAGG	4146	False	NA	4	True	AATAAA	-17	NA	7588595	7594427	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039456.11_93667762_93672965_1	chr16	+	1856	3	ISM	ENSMUSG00000039456.11	ENSMUST00000202261.5	4179	17	38753	-4	10361	4	3prime_fragment	FALSE	canonical	3	566	junction_1	20	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	NA	False	NA	20	True	AATAAA	-31	NA	93667761	93672965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_93668141_93670124_93670283_93671646
ENSMUSG00000039456.11_93668096_93672965_1	chr16	+	1522	3	ISM	ENSMUSG00000039456.11	ENSMUST00000202261.5	4179	17	39087	-4	10695	4	3prime_fragment	FALSE	canonical	3	566	junction_1	20	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	NA	False	NA	20	True	AATAAA	-31	NA	93668095	93672965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_93668141_93670124_93670283_93671646
ENSMUSG00000039461.13_108180157_108183147_1	chr9	-	1578	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	212	-696	0	0	multi-exon	TRUE	canonical	3	19	junction_2	5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7327	False	NA	-2	True	ATTAAA	-13	NA	108183147	108180156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_108181453_108182524_108182580_108182920
ENSMUSG00000039463.15_167263641_167286075_1	chr2	+	681	6	NNC	ENSMUSG00000039463.15	novel	1884	6	NA	NA	0	-2795	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	45.3898667105335	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTCTGGAACTTGTCAC	NA	False	NA	NA	False	NA	NA	NA	167263640	167286075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167285842
ENSMUSG00000039463.15_167263641_167316557_1	chr2	+	2149	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	9	2363	0	1	multi-exon	TRUE	non_canonical	2	49	junction_9	20.9574531790005	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCATGGCAGGGTTCAGC	NA	False	NA	NA	False	AATGAA	-13	NA	167263640	167316557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
ENSMUSG00000039483.11_30713109_30718282_1	chr2	-	2084	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	2063	0	-5	0	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	1745	False	NA	-19	True	ATTAAA	-19	NA	30718282	30713108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
ENSMUSG00000039509.9_124626039_124632967_1	chr8	-	380	4	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	43037	2177	9407	-2177	3prime_fragment	FALSE	canonical	3	464	junction_1	7.78888096369861	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGTCTGGATCAACCTG	6371	False	NA	-17	True	ATTAAA	-23	NA	124632967	124626038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952
ENSMUSG00000039509.9_124626039_124675994_1	chr8	-	3621	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	10	2177	0	-2177	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGTCTGGATCAACCTG	NA	False	NA	-17	True	ATTAAA	-23	NA	124675994	124626038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
ENSMUSG00000039515.12_30331865_30337817_1	chr2	+	1663	3	FSM	ENSMUSG00000039515.12	ENSMUST00000131476.8	989	3	0	-674	0	0	multi-exon	FALSE	canonical	3	6	junction_1	219	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	9369	False	NA	17	True	ATTAAA	-20	NA	30331864	30337817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30331991_30333301_30333410_30336388
ENSMUSG00000039536.17_166790193_166838185_1	chr2	-	2832	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109235.8	3569	12	13	724	0	0	multi-exon	FALSE	canonical	3	104	junction_8	51.6000192196774	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838185	166790192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUSG00000039615.10_26049479_26051893_1	chr17	-	1361	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	442	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	1371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAAAATTT	6787	False	NA	NA	False	AATACA	-10	NA	26051893	26049478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039615.10_26049608_26051893_1	chr17	-	1180	7	NNC	ENSMUSG00000039615.10	novel	1803	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_5	546.882579312557	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050884_26051019_26051219_26051665
ENSMUSG00000039615.10_26049608_26051893_2	chr17	-	1358	6	NNC	ENSMUSG00000039615.10	novel	1408	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	73	junction_4	597.282043928997	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050884_26051019_26051219_26051665
ENSMUSG00000039615.10_26049608_26051893_3	chr17	-	1232	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	442	129	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	1330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039630.11_178155864_178157885_1	chr1	-	1337	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	3956	0	-3467	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTTTGGGATTCTCGC	NA	False	NA	-21	True	AATAAA	-15	NA	178157885	178155863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039630.11_178156133_178157885_1	chr1	-	1068	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	4225	0	3298	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTGTCTAATGGGATC	NA	False	NA	-5	True	ATTAAA	-16	NA	178157885	178156132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039630.11_178156133_178164771_1	chr1	-	2824	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	591	4225	522	3298	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTGTCTAATGGGATC	NA	False	NA	-5	True	ATTAAA	-16	NA	178164771	178156132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ENSMUSG00000039630.11_178156601_178157885_1	chr1	-	600	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	4693	0	2830	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGTCTTTTATTAAGC	NA	False	NA	-6	True	AGTAAA	-14	NA	178157885	178156600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039630.11_178156601_178164771_1	chr1	-	2356	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	591	4693	522	2830	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGTCTTTTATTAAGC	NA	False	NA	-6	True	AGTAAA	-14	NA	178164771	178156600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ENSMUSG00000039640.8_120375439_120379580_1	chr11	+	1088	4	ISM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	311	0	297	intron_retention	FALSE	canonical	3	1076	junction_2	36.3348623531481	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTCCTGAACCTTG	8955	False	NA	25	True	TATAAA	-17	NA	120375438	120379580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922
ENSMUSG00000039640.8_120375439_120379580_2	chr11	+	1005	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	311	0	297	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTCCTGAACCTTG	8955	False	NA	25	True	TATAAA	-17	NA	120375438	120379580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUSG00000039671.19_165669102_165726599_2	chr2	-	2349	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-31	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	175.668828168468	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165726599	165669101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
ENSMUSG00000039671.19_165669102_165740936_1	chr2	-	2303	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	164.953988074912	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165740936	165669101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ENSMUSG00000039671.19_165669102_165740936_2	chr2	-	2378	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165740936	165669101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
ENSMUSG00000039682.13_45650846_45669501_1	chr5	+	1605	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	130	532	0	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	4084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650845	45669501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45669625_1	chr5	+	1729	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	130	408	0	-408	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	4120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTCAAGCCATATTT	NA	False	NA	14	True	ATTAAA	-17	NA	45650845	45669625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45670033_1	chr5	+	2137	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	130	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	4583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650845	45670033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039693.12_48540079_48561919_1	chr4	+	1720	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	-342	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	2	True	NA	15	True	NA	NA	NA	48540078	48561919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_48540272_48552379_48552831_48560843
ENSMUSG00000039720.8_27687487_27713856_1	chr8	-	1601	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ENSMUSG00000039720.8_27687487_27713856_2	chr8	-	1413	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039737.12_136209938_136227786_1	chr5	-	905	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	31	2957	-22	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTTGTCCACACGTGCG	NA	False	NA	-13	True	AGTAAA	-16	NA	136227786	136209937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ENSMUSG00000039745.9_49408863_49423359_1	chr7	+	902	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	-364	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9880	False	NA	3	True	TATAAA	-17	NA	49408862	49423359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408863_49423743_1	chr7	+	1230	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	20	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9880	False	NA	15	True	AATAAA	-15	NA	49408862	49423743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408863_49423743_2	chr7	+	1286	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	20	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9880	False	NA	15	True	AATAAA	-15	NA	49408862	49423743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408901_49423359_2	chr7	+	974	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	364	0	-364	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9918	False	NA	3	True	TATAAA	-17	NA	49408900	49423359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408901_49423743_1	chr7	+	1644	5	NIC	ENSMUSG00000039745.9	novel	1338	6	NA	NA	0	20	intron_retention	FALSE	canonical	3	230	junction_1	21.9928965804871	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9918	False	NA	15	True	AATAAA	-15	NA	49408900	49423743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039768.17_152018191_152065679_1	chr4	+	2193	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	43	915	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	9113	False	NA	28	True	TATAAA	-20	NA	152018190	152065679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039768.17_152018191_152066412_1	chr4	+	2926	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	43	182	0	-182	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTCTGTCCATCTGT	9113	False	NA	18	True	NA	NA	NA	152018190	152066412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039770.7_73143701_73156502_1	chr17	+	1179	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	253	1688	253	673	multi-exon	FALSE	canonical	3	244	junction_1	49	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTCCTCTGTTACT	998	False	NA	13	True	AATAAA	-13	NA	73143700	73156502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_73143787_73153273_73153439_73155574
ENSMUSG00000039770.7_73144531_73156502_1	chr17	+	1266	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	223	930	0	673	multi-exon	FALSE	canonical	3	101	junction_1	120.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTCCTCTGTTACT	1828	False	NA	13	True	AATAAA	-13	NA	73144530	73156502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_73144704_73153273_73153439_73155574
ENSMUSG00000039795.15_10405015_10416376_1	chr3	-	1810	8	NIC	ENSMUSG00000039795.15	novel	936	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	9	junction_2	296.912685578004	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416376	10405014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
ENSMUSG00000039810.12_128379432_128383615_1	chr10	-	2093	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	28	1600	-3	1235	multi-exon	FALSE	canonical	3	75	junction_2	17	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAATTTCTTTGATGGC	NA	False	NA	-8	True	AATAAA	-23	NA	128383615	128379431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128381408_128382696_128382761_128383562
ENSMUSG00000039826.14_29666122_29677672_1	chr2	-	2372	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677672	29666121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_29666271_29666464_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_29668430_29677660_1	chr2	-	1021	7	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	854	2308	0	176	5prime_fragment	FALSE	canonical	3	126	junction_1	24.0791518861349	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	29677660	29668429	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039849.7_164721277_164733295_1	chr2	+	2701	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	3079	0	-3079	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTGAGGGTCTTGGG	5949	False	NA	15	True	AATACA	-13	NA	164721276	164733295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
ENSMUSG00000039850.17_119382201_119398592_1	chr11	+	1385	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	28	3657	0	15	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCATGGGTCACTCTTAC	6282	False	NA	NA	False	AATACA	-23	NA	119382200	119398592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ENSMUSG00000039886.9_135764339_135773075_1	chr5	-	1332	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	227	0	-13	0	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5290	False	NA	-4	True	AATAAA	-21	NA	135773075	135764338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUSG00000039887.12_121085422_121155669_1	chr3	+	963	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	1074	0	313	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085421	121155669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ENSMUSG00000039917.11_135661558_135673002_1	chr5	+	1893	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	86	2228	0	-379	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTGTGGCATACTGTG	NA	False	NA	17	True	TATAAA	-21	NA	135661557	135673002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000039917.11_135661558_135673002_2	chr5	+	2013	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	50	2300	0	-379	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTGTGGCATACTGTG	NA	False	NA	17	True	TATAAA	-21	NA	135661557	135673002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000039968.10_21125109_21156820_1	chr5	-	729	3	ISM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	0	27083	0	0	5prime_fragment	FALSE	canonical	3	36	junction_1	4	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGAAAAAGAAAAAGA	NA	False	NA	NA	False	AATATA	-24	NA	21156820	21125108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_21125161_21132617_21132729_21156254
ENSMUSG00000039994.16_128067949_128081983_1	chr10	+	1770	14	ISM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	-9	6738	0	5	5prime_fragment	FALSE	canonical	3	289	junction_8	41.9153839095388	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTCAGGACCAGGGTG	6606	False	NA	NA	False	AAAAAG	-15	NA	128067948	128081983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954
ENSMUSG00000040018.10_43723559_43741439_1	chr19	-	2932	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	1866	0	-1866	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTCAGCTAACCCAG	NA	False	NA	-14	True	AATAAA	-18	NA	43741439	43723558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040025.18_131913375_131939420_1	chr4	-	2783	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	194	1152	-4	226	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGTACCACTTAGTATT	NA	False	NA	-14	True	AATAAA	-23	NA	131939420	131913374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
ENSMUSG00000040025.18_131914061_131939420_1	chr4	-	2097	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	194	1838	-4	0	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	131939420	131914060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
ENSMUSG00000040034.16_7543304_7544619_1	chr10	+	996	2	FSM	ENSMUSG00000040034.16	ENSMUST00000162346.2	458	2	26	-564	0	564	multi-exon	FALSE	canonical	3	1246	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGCTGGGCGGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	7543303	7544619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_7543446_7543765
ENSMUSG00000040043.18_127969193_128012498_1	chr10	-	1414	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-150	217	-150	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTGGCTGATGGAAC	NA	False	NA	-57	True	NA	NA	NA	128012498	127969192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ENSMUSG00000040112.10_146944262_146972399_1	chr6	+	1082	8	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	237.425391073766	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATTGTCTTACGTCAGG	NA	False	NA	14	True	TATAAA	-16	NA	146944261	146972399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_146944409_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040112.10_146944262_146972399_2	chr6	+	1072	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	0	3090	0	2	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATTGTCTTACGTCAGG	NA	False	NA	14	True	TATAAA	-16	NA	146944261	146972399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040123.18_57030380_57049103_1	chr14	-	2826	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-13	405	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTTGTTTTCTTGTG	8891	False	NA	1	True	NA	NA	NA	57049103	57030379	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ENSMUSG00000040139.15_136977303_137012485_1	chr7	-	1305	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040139.15_136977303_137012485_2	chr7	-	1283	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	-21	-563	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040174.15_93810982_93841099_1	chr2	-	1163	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_93810982_93841099_2	chr2	-	1672	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	58	junction_9	37.2253730009751	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
ENSMUSG00000040174.15_93810982_93841099_3	chr2	-	1398	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ENSMUSG00000040177.11_130944444_130964439_1	chr7	-	2229	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	49	4495	0	471	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATTACGTTGTTTCTTC	NA	False	NA	-4	True	AATAGA	-16	NA	130964439	130944443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
ENSMUSG00000040177.11_130944915_130964439_1	chr7	-	1758	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	49	4966	0	0	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATATTTGGTTTTTTTT	NA	False	NA	NA	False	AATATA	-25	NA	130964439	130944914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
ENSMUSG00000040188.11_57468226_57495088_1	chr9	+	1350	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	990	0	73	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCTTGGTCTGATTTT	NA	False	NA	5	True	NA	NA	NA	57468225	57495088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUSG00000040204.7_65797644_65809125_1	chr9	+	640	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1423	0	-1423	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCCCTGGCACTCTACTT	NA	False	NA	9	True	NA	NA	NA	65797643	65809125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040204.7_65797644_65809404_1	chr9	+	919	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1144	0	-1144	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAATCTCTTGTCATTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	65797643	65809404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040213.14_142406812_142450099_1	chr3	+	1703	14	FSM	ENSMUSG00000040213.14	ENSMUST00000044392.11	4206	14	-29	2532	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.3184793520062	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142406811	142450099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_142418579_142450099_1	chr3	+	1695	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10297	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142418578	142450099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040234.17_146503850_146535996_1	chr6	-	3142	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	99	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATGTCCTCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	146535996	146503849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ENSMUSG00000040234.17_146504985_146535996_1	chr6	-	2007	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	99	1135	0	-1135	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTAGTGTTTTGTTCTTG	NA	False	NA	-5	True	AATAAA	-15	NA	146535996	146504984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ENSMUSG00000040236.5_3726510_3729629_1	chr8	+	709	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	211	1626	0	-1291	multi-exon	FALSE	canonical	3	198	junction_1	0	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTTGTGTCTTGTGT	NA	False	NA	24	True	GATAAA	-24	NA	3726509	3729629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3726604_3729014
ENSMUSG00000040236.5_3726510_3730921_1	chr8	+	2001	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	211	334	0	1	multi-exon	FALSE	canonical	3	198	junction_1	0	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGGCTATTATTATTGT	NA	False	NA	15	True	NA	NA	NA	3726509	3730921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3726604_3729014
ENSMUSG00000040242.15_146479419_146499253_1	chr6	+	1375	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	62	1443	0	424	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGGTTGGTGTGGTTTTC	NA	False	NA	22	True	AATAAA	-34	NA	146479418	146499253	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
ENSMUSG00000040250.15_146451139_146478940_1	chr6	-	2657	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	393	9	338	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146478940	146451138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040250.15_146451139_146478940_2	chr6	-	2579	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	338	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146478940	146451138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040269.6_8867206_8988874_1	chr3	-	679	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	104	0	104	0	multi-exon	FALSE	canonical	3	890	junction_1	0.5	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988874	8867205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_8867475_8965045_8965228_8988646
ENSMUSG00000040269.6_8867206_8988874_2	chr3	-	497	2	NIC	ENSMUSG00000040269.6	novel	783	3	NA	NA	104	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988874	8867205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_8867475_8988646
ENSMUSG00000040274.12_3391485_3571069_1	chr5	+	1597	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	0	-1156	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	NA	False	NA	19	True	NA	NA	NA	3391484	3571069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000040282.14_115412197_115607947_1	chr2	+	1450	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	-17	1302	0	-1302	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCCCCACCCCACCCCC	NA	False	NA	NA	False	NA	NA	NA	115412196	115607947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ENSMUSG00000040282.14_115412214_115609070_1	chr2	+	2556	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	0	179	0	-179	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTAAGTTACCAGTTTG	NA	False	NA	8	True	ATTAAA	-17	NA	115412213	115609070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ENSMUSG00000040302.18_3633978_3646106_1	chr5	-	1889	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	479	0	-24	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1953	False	NA	-9	True	AATAAA	-21	NA	3646106	3633977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUSG00000040312.15_35827997_35841903_1	chr17	+	2548	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTGAGAGACTGCGAT	4432	False	NA	21	True	AATAAA	-23	NA	35827996	35841903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040312.15_35828073_35841903_1	chr17	+	2590	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	76	-10	0	1	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTGAGAGACTGCGAT	4508	False	NA	21	True	AATAAA	-23	NA	35828072	35841903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040323.14_161553084_161555260_1	chr1	-	1727	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	-202	-727	-202	727	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAGAACACAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	161555260	161553083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_161553876_161554208_161554584_161554700
ENSMUSG00000040323.14_161553084_161555260_2	chr1	-	2060	2	NIC	ENSMUSG00000040323.14	novel	798	3	NA	NA	-202	727	intron_retention	FALSE	non_canonical	3	303	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAGAACACAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	161555260	161553083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_161554584_161554700
ENSMUSG00000040345.11_127161988_127165815_1	chr10	+	1391	11	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	2363	-3	1796	3	3prime_fragment	FALSE	canonical	3	63	junction_5	5.18169856321265	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATAGACTAAATACAG	NA	False	NA	13	True	ATTAAA	-19	NA	127161987	127165815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_+_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040354.15_127132095_127147547_1	chr10	-	2826	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	108	5	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147547	127132094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ENSMUSG00000040359.15_25250147_25281821_1	chr4	-	2774	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	0	1542	0	0	multi-exon	TRUE	canonical	3	153	junction_3	22.816024799564	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTTGTTTGTTATTT	-6	True	NA	3	True	AATAAA	-24	NA	25281821	25250146	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000040407.19_3978274_4011004_1	chr5	+	1929	8	FSM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	96	-15	0	15	multi-exon	FALSE	canonical	3	19	junction_3	6.1145527311522	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGCTAGACAGAATGG	NA	False	NA	NA	False	AATAAA	-28	NA	3978273	4011004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111
ENSMUSG00000040415.16_127026247_127031597_1	chr10	-	996	4	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	54.0760780957922	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_127026909_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040415.16_127026247_127031597_2	chr10	-	2259	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	-1	-264	0	0	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040446.5_24621007_24663270_1	chr18	-	1318	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	-9	2990	-9	0	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCTTTTGTAAGTT	NA	False	NA	NA	False	AATGAA	-17	NA	24663270	24621006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
ENSMUSG00000040463.17_72332203_72342376_1	chr11	+	4118	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	22	218	0	-218	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	46	True	AATAAA	-16	NA	72332202	72342376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUSG00000040464.16_5588810_5609529_1	chr5	-	1607	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	9	1356	-6	423	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGACTCTGTTTTAAAA	NA	False	NA	NA	False	AATATA	-13	NA	5609529	5588809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUSG00000040466.17_27147457_27165412_1	chr7	+	817	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	54	157	0	3	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCTCTCTCTGTCTGTG	NA	False	NA	49	True	NA	NA	NA	27147456	27165412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUSG00000040472.16_55953334_55957384_1	chr14	-	1634	11	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	2249	0	206	0	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55957384	55953333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ENSMUSG00000040472.16_55953782_55957384_1	chr14	-	1283	10	ISM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	2249	448	206	0	3prime_fragment	FALSE	canonical	3	454	junction_9	28.5479886212845	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55957384	55953781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252
ENSMUSG00000040472.16_55953782_55959659_1	chr14	-	1973	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	909	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959659	55953781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUSG00000040482.17_35055995_35058162_1	chr17	+	1536	6	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	133	junction_1	20.3115730557729	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35056193_35056368_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040488.19_27004565_27010103_1	chr7	-	1604	8	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	22985	0	0	0	3prime_fragment	FALSE	canonical	3	513	junction_4	58.3896132781808	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27010103	27004564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
ENSMUSG00000040521.12_126858317_126866672_1	chr10	-	1053	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	37	116	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCCTCAAATTTGTTT	NA	False	NA	-24	True	TATAAA	-20	NA	126866672	126858316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUSG00000040532.15_135038545_135041029_2	chr5	+	1101	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	392	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_135038545_135041029_3	chr5	+	1243	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	235	-5	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000040550.18_14809498_14826413_1	chr4	-	3092	7	FSM	ENSMUSG00000040550.18	ENSMUST00000117268.9	3266	7	174	0	-18	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTCAAATTGTCATTTGT	5	True	NA	9	True	AATAAA	-28	NA	14826413	14809497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ENSMUSG00000040550.18_14809662_14826413_1	chr4	-	2928	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	174	155	-18	-155	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGAATGTGTCTTCACC	5	True	NA	-4	True	ATTAAA	-17	NA	14826413	14809661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ENSMUSG00000040550.18_14810046_14826413_1	chr4	-	2544	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	174	539	-18	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGAAGTAATGTTATC	5	True	NA	-2	True	AATAAA	-12	NA	14826413	14810045	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ENSMUSG00000040557.15_134961222_134970086_1	chr5	+	1403	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	1405	0	0	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	3412	False	NA	4	True	NA	NA	NA	134961221	134970086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040591.19_91108589_91274988_1	chr2	-	1564	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	-1	414	0	0	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATGAGTCTAAAGCCAG	NA	False	NA	-7	True	AATAAA	-18	NA	91274988	91108588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ENSMUSG00000040599.14_70910437_70918197_1	chr11	+	2537	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	0	-2193	0	0	multi-exon	FALSE	canonical	3	36	junction_1	44	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70910550_70915375_70915538_70915935
ENSMUSG00000040616.4_141758303_141811942_1	chr4	-	1779	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-327	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9873	False	NA	-6	True	AATAAA	-18	NA	141811942	141758302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_141759406_141764715_141765245_141811795
ENSMUSG00000040618.8_55777723_55786392_1	chr14	+	2318	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	0	1082	0	1	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCTGTGTCTGCATAGG	8891	False	NA	32	True	NA	NA	NA	55777722	55786392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040618.8_55777846_55786329_1	chr14	+	1944	9	NIC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_4	532.016447114185	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040618.8_55777846_55786329_2	chr14	+	2132	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	123	1145	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040652.17_65583861_65596799_1	chr9	+	1030	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCTGCAGGGGCGGGA	4635	False	NA	NA	False	TTTAAA	-38	NA	65583860	65596799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUSG00000040652.17_65583861_65597582_1	chr9	+	1813	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	331	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	4635	False	NA	23	True	AATAAA	-17	NA	65583860	65597582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUSG00000040658.8_46807637_46809997_1	chr17	+	637	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	553	0	-553	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGTTTAACTACATGTAT	NA	False	NA	12	True	NA	NA	NA	46807636	46809997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUSG00000040681.17_95922788_95928929_1	chr16	-	1181	4	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	9434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928752
ENSMUSG00000040681.17_95922788_95928929_2	chr16	-	1204	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	970	0	646	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	9715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ENSMUSG00000040681.17_95922788_95928929_3	chr16	-	1204	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	9708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928759
ENSMUSG00000040681.17_95923251_95928929_1	chr16	-	741	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	1433	0	183	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCGTCTCAGTCGTGCA	NA	False	NA	-11	True	AATACA	-19	NA	95928929	95923250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ENSMUSG00000040688.17_24919625_24926606_1	chr17	-	2496	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	28	2702	-1	-193	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCTCATGTGAATC	NA	False	NA	-24	True	NA	NA	NA	24926606	24919624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ENSMUSG00000040694.5_48726259_48739646_1	chr17	-	1108	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	312	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739646	48726258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUSG00000040694.5_48726259_48739760_1	chr17	-	1222	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	198	0	-114	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739760	48726258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUSG00000040713.13_165591315_165601629_1	chr1	+	915	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	1248	0	142	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCAGAGAAAAATGCCAT	NA	False	NA	18	True	AAAAAG	-25	NA	165591314	165601629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ENSMUSG00000040722.8_57348610_57375320_1	chr9	-	3047	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	0	-2372	0	0	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375320	57348609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
ENSMUSG00000040726.11_26722632_26724286_1	chr14	+	828	4	FSM	ENSMUSG00000040726.11	ENSMUST00000035433.10	1141	4	313	0	313	0	multi-exon	FALSE	canonical	3	134	junction_1	19.2584757675391	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTATTTTAATATACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	26722631	26724286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_26722834_26723328_26723529_26723775_26723878_26723962
ENSMUSG00000040731.14_134648731_134668182_1	chr5	-	2408	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	162	156	-3	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	2199	False	NA	-4	True	AATAAA	-18	NA	134668182	134648730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040731.14_134653385_134668182_1	chr5	-	1273	4	FSM	ENSMUSG00000040731.14	ENSMUST00000200874.2	896	4	-26	-351	-3	351	multi-exon	FALSE	canonical	3	2106	junction_3	61.0482504981829	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATCTCTTTGTGTGTGT	2199	False	NA	NA	False	NA	NA	NA	134668182	134653384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040746.16_70538113_70542247_1	chr11	+	1297	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	144.752662612241	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_70538140_70538675_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70538113_70542247_3	chr11	+	1781	9	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	55	junction_3	157.209205757805	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_70538779_70538854_70538936_70540046_70540121_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70538113_70542247_4	chr11	+	1742	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	154.113954952532	420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040749.12_162853701_162859489_1	chrX	-	1983	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	-1180	0	0	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859489	162853700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
ENSMUSG00000040760.12_26645501_26692478_1	chr14	-	2375	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	711	4556	-16	-4556	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGCTTTCCTAAACAAGA	NA	False	NA	-1	True	AATAAA	-22	NA	26692478	26645500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040771.15_48717042_48724283_2	chr17	+	1050	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	419.268219639886	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717041	48724283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_48717123_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717268_48724283_1	chr17	+	1094	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	148	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	387.458075151364	309	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717267	48724283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_48717401_48717855_48717933_48718291_48718437_48721258_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717268_48724283_2	chr17	+	1099	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	226	-1	148	1	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717267	48724283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040774.16_106410299_106455059_1	chr3	-	2032	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	59	723	0	0	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106455059	106410298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
ENSMUSG00000040795.13_129509412_129512878_1	chr4	-	1259	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-5	140	combination_of_known_junctions	TRUE	canonical	3	40	junction_1	35.7960891718635	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCACGCCTTTAATCCC	NA	False	NA	-20	True	NA	NA	NA	129512878	129509411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000040813.17_106535951_106563104_1	chr9	-	1581	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	-223	6	-2	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7890	False	NA	-6	True	AATAAA	-22	NA	106563104	106535950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ENSMUSG00000040822.8_54923694_54928198_1	chr14	+	1439	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	0	-628	0	0	multi-exon	FALSE	canonical	3	26	junction_1	179.5	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923693	54928198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54924111_54924493_54924578_54927260
ENSMUSG00000040824.4_18883784_18886651_1	chr7	+	467	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	137	816	0	-816	multi-exon	FALSE	canonical	3	3249	junction_1	86	3806	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	NA	False	NA	1	True	AATAAA	-19	NA	18883783	18886651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_18883820_18885142_18885323_18886400
ENSMUSG00000040842.18_140842624_140867077_1	chr4	-	932	4	FSM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	0	2312	0	1254	multi-exon	FALSE	canonical	3	169	junction_2	126.792043213374	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTTTTTTTTTTTTT	NA	False	NA	-19	True	NA	NA	NA	140867077	140842623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_140843176_140845837_140846093_140847634_140847685_140867002
ENSMUSG00000040842.18_140842624_140867077_2	chr4	-	882	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	9	2312	0	1254	multi-exon	FALSE	canonical	3	212	junction_2	123	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTTTTTTTTTTTTT	NA	False	NA	-19	True	NA	NA	NA	140867077	140842623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_140843176_140845837_140846093_140867002
ENSMUSG00000040843.11_165042491_165064522_1	chr1	-	1754	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	-10	2636	-10	660	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGTTTGCTGTTTATT	NA	False	NA	-5	True	AATAAA	-18	NA	165064522	165042490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
ENSMUSG00000040843.11_165043151_165064491_1	chr1	-	1063	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	21	3296	0	0	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTTTATCCTGTCTGT	NA	False	NA	-1	True	AATAAA	-28	NA	165064491	165043150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
ENSMUSG00000040859.15_129355477_129382291_1	chr4	+	2691	12	NNC	ENSMUSG00000040859.15	novel	2823	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	36.0511574074013	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355476	129382291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833_129381320_129381348
ENSMUSG00000040859.15_129355477_129382291_2	chr4	+	2720	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	103	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355476	129382291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040883.19_21832309_21838758_1	chr9	-	786	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	73	3	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGGCCATGGTCATT	NA	False	NA	-10	True	AATAAA	-9	NA	21838758	21832308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ENSMUSG00000040952.17_24584061_24589231_1	chr7	+	509	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	265	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	28331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584060	24589231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000041028.17_36842781_36857252_1	chr14	-	2499	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	732	-23	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	3510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857252	36842780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041028.17_36843773_36857252_1	chr14	-	1507	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	1724	-23	-992	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	2313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTGGAAGCCTGCAGAA	NA	False	NA	-7	True	AGTAAA	-25	NA	36857252	36843772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041028.17_36843905_36857252_1	chr14	-	1375	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	1856	-23	-1124	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	2208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857252	36843904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041035.10_45549074_45566193_1	chr19	+	789	6	NNC	ENSMUSG00000041035.10	novel	687	7	NA	NA	0	211	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_3	159.454570332744	243	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTGACTGCCCCTTT	3712	False	NA	13	True	AGTAAA	-20	NA	45549073	45566193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_+_45549147_45553349_45553431_45560323_45560438_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041035.10_45549074_45566193_2	chr19	+	800	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	20	533	0	211	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTGACTGCCCCTTT	3712	False	NA	13	True	AGTAAA	-20	NA	45549073	45566193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041057.11_71923210_71964973_1	chr17	+	2393	18	ISM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	320	-189	0	0	3prime_fragment	FALSE	canonical	2	2	junction_11	379.588823255486	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGATTTAGGTGAATAC	NA	False	NA	100	True	AATATA	-28	NA	71923209	71964973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955771_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUSG00000041084.9_130489568_130502913_1	chr3	-	880	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	180	7	152	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	-6	True	AATAAA	-17	NA	130502913	130489567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUSG00000041084.9_130489790_130503065_1	chr3	-	810	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	28	229	0	-222	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCATCAGCTTTTGGAC	NA	False	NA	-3	True	AATAAA	-19	NA	130503065	130489789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUSG00000041124.12_4376569_4386714_1	chr9	+	2637	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	7	156	0	-147	multi-exon	FALSE	canonical	3	88	junction_1	13	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATTCTGTATTCTTTG	2	True	NA	7	True	AATACA	-21	NA	4376568	4386714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_4376624_4383536_4384143_4384738
ENSMUSG00000041126.17_6378138_6394394_1	chr11	-	675	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	49	909	-42	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394394	6378137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ENSMUSG00000041133.12_150799424_150844966_1	chrX	+	3665	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	0	-724	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150799423	150844966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041133.12_150799424_150844966_2	chrX	+	3967	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	724	0	-724	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150799423	150844966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041220.11_129326035_129428636_1	chr3	+	2443	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	0	3508	0	16	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326034	129428636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000041220.11_129326035_129428766_1	chr3	+	2573	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	0	3378	0	146	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTCAAAGACGCAATTAC	NA	False	NA	4	True	AATAAA	-18	NA	129326034	129428766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000041231.16_44346140_44361325_1	chr11	-	1346	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	742	0	236	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAAAATATATCTACGA	NA	False	NA	NA	False	AAAAAG	-19	NA	44361325	44346139	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUSG00000041236.9_18901456_19050981_1	chr13	+	3181	30	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	298	junction_29	71.5253046363968	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901455	19050981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289_19050795_19050816
ENSMUSG00000041241.13_138161988_138167214_1	chr4	+	1365	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	6	2362	0	892	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138161987	138167214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
ENSMUSG00000041264.17_149121476_149152244_1	chr5	+	3482	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	316	-6	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121475	149152244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUSG00000041287.6_69545830_69547553_1	chr11	+	1171	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	-310	0	-310	0	multi-exon	FALSE	canonical	3	116	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	False	NA	24	True	ATTAAA	-17	NA	69545829	69547553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69546726_69547278
ENSMUSG00000041303.8_54436736_54478141_1	chr1	-	3020	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	-11	1573	-11	-1573	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACAATATTGCCTTCTGA	6689	False	NA	-3	True	AATAAA	-20	NA	54478141	54436735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ENSMUSG00000041323.7_105727670_105748709_1	chr12	+	1613	6	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55435	-3	16136	3	3prime_fragment	FALSE	canonical	3	37	junction_2	5.54977477020464	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTCTTTTATTGGTTT	NA	False	NA	NA	False	AATAAA	-43	NA	105727669	105748709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041329.14_69490562_69496786_1	chr11	-	2973	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	-131	0	-18	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496786	69490561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
ENSMUSG00000041346.12_69452585_69454509_1	chr11	-	1092	5	ISM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	15641	0	239	0	intron_retention	FALSE	canonical	3	153	junction_4	13.7908484148003	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69454509	69452584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129
ENSMUSG00000041351.17_137447227_137457172_1	chr4	+	1934	10	ISM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	12394	0	1044	0	3prime_fragment	TRUE	canonical	3	83	junction_7	18.9326290948839	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	NA	False	NA	11	True	AATAAA	-21	NA	137447226	137457172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041353.13_149191574_149242147_1	chrX	-	1203	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	3	-342	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	131	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242147	149191573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149242067
ENSMUSG00000041353.13_149192309_149242147_1	chrX	-	468	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	3	393	-1	-142	multi-exon	FALSE	canonical	0	0	junction_2	131	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTCTTGGCTTTTGTTTG	NA	False	NA	NA	False	TATAAA	-22	NA	149242147	149192308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149242067
ENSMUSG00000041353.13_149192309_149242147_2	chrX	-	578	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	3	735	-1	-142	multi-exon	FALSE	canonical	3	95	junction_2	83.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTCTTGGCTTTTGTTTG	NA	False	NA	NA	False	TATAAA	-22	NA	149242147	149192308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149241957
ENSMUSG00000041355.14_88483246_88495726_1	chr3	+	1371	9	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_2	2287.5892571384	4281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	NA	False	NA	15	True	AATAAA	-17	NA	88483245	88495726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_88483288_88483545_88483689_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041359.15_105183009_105188975_1	chr12	-	1309	6	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	829.202846111855	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188975	105183008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188975_2	chr12	-	1206	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	77	-748	0	0	multi-exon	FALSE	canonical	3	551	junction_2	399	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188975	105183008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_105183961_105184481_105184552_105188791
ENSMUSG00000041359.15_105183009_105188975_3	chr12	-	1239	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	843.075730584151	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188975	105183008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188975_4	chr12	-	1328	4	FSM	ENSMUSG00000041359.15	ENSMUST00000176579.2	760	4	-10	-558	0	0	multi-exon	FALSE	canonical	3	100	junction_2	769.488574747323	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188975	105183008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_105183961_105184481_105184552_105184966_105185089_105188791
ENSMUSG00000041375.19_16009402_16020699_1	chr7	-	1928	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	16	1432	0	0	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACACCCACCCCACT	NA	False	NA	-14	True	AATAAA	-14	NA	16020699	16009401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041406.15_163781575_163822347_1	chr1	-	2909	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	18	252	-14	-252	multi-exon	FALSE	canonical	2	170	junction_8	40.7878461455702	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCTTTATTTGACATAAA	NA	False	NA	NA	False	CATAAA	-23	NA	163822347	163781574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ENSMUSG00000041408.19_34461316_34468176_1	chr14	+	860	4	ISM	ENSMUSG00000041408.19	ENSMUST00000151285.8	1820	11	13369	0	2088	0	3prime_fragment	FALSE	canonical	3	1010	junction_3	44.6791027463872	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGGTTGTTGTTCCCT	NA	False	NA	9	True	AATAAA	-21	NA	34461315	34468176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_+_34461396_34463013_34463103_34466765_34466862_34467581
ENSMUSG00000041426.13_52884205_52960019_1	chr1	+	1704	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	126	0	-121	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGGTGTGTTGATGCCT	NA	False	NA	5	True	AATAAA	-15	NA	52884204	52960019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUSG00000041429.4_24851656_24857812_1	chr17	+	909	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	908	False	NA	12	True	AATAAA	-24	NA	24851655	24857812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041431.17_100915700_100923007_1	chr13	-	1876	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	71	542	-13	417	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCCCCAAGTCTCACTA	NA	False	NA	2	True	ATTAAA	-19	NA	100923007	100915699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUSG00000041431.17_100916117_100923007_1	chr13	-	1459	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	71	959	-13	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTACTTGCTCTTCAATA	NA	False	NA	-50	True	NA	NA	NA	100923007	100916116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUSG00000041449.17_104214164_104219928_1	chr12	+	1306	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAACTTCTCAAATGG	NA	False	NA	NA	False	NA	NA	NA	104214163	104219928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041449.17_104214164_104220666_1	chr12	+	2044	5	NIC	ENSMUSG00000041449.17	novel	1239	4	NA	NA	0	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214163	104220666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041453.13_146769700_146772796_1	chr5	+	810	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	0	1046	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	6781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769699	146772796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146772796_1	chr5	+	554	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	256	1046	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	6623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769955	146772796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146772796_2	chr5	+	647	7	NNC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	5852.7472585293	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769955	146772796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_146769982_146770457_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146773842_1	chr5	+	1600	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	256	0	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	6668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTTAGTGATGGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	146769955	146773842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041459.16_148701183_148711222_1	chr4	-	2158	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_2	chr4	-	1217	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_2	402.382192164898	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_3	chr4	-	1190	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_4	chr4	-	1199	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	0	807	0	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_5	chr4	-	1120	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	407.75718064474	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702093_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_6	chr4	-	1129	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	406.055741624377	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_1	chr4	-	1903	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	28	junction_1	398.788756388921	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148702283_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_3	chr4	-	1747	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	409.190834316812	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148702200_148703194_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_4	chr4	-	1783	7	FSM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	231	4481	0	0	multi-exon	FALSE	canonical	3	205	junction_1	333.080404040159	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_5	chr4	-	1191	8	NIC	ENSMUSG00000041459.16	novel	6425	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	477.117792327117	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_148701501_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_6	chr4	-	1774	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	-7	137	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_7	chr4	-	2742	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	254	4481	0	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_8	chr4	-	1894	7	ISM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	-7	138	0	0	5prime_fragment	FALSE	canonical	3	29	junction_1	398.417285434924	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041515.11_121463097_121482143_1	chr8	+	1557	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	1290	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTAATGGCTGGCCTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	121463096	121482143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUSG00000041548.5_116546550_116548440_1	chr5	-	1211	2	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	5511	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116548440	116546549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_116547550_116548229
ENSMUSG00000041560.13_15671763_15679988_1	chr7	-	1794	12	NIC	ENSMUSG00000041560.13	novel	1793	12	NA	NA	-8	0	intron_retention	FALSE	canonical	3	1683	junction_10	114.507858187885	3016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679988	15671762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
ENSMUSG00000041560.13_15671763_15679988_2	chr7	-	1510	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	11	1655	-8	0	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	2988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679988	15671762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
ENSMUSG00000041629.8_113553733_113574761_1	chr11	-	811	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	220	1588	220	-1588	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113574761	113553732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113554370_113568129_113568230_113574687
ENSMUSG00000041629.8_113554027_113574761_1	chr11	-	517	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	220	1882	220	-1882	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCGGCTTTCCGTCT	NA	False	NA	-22	True	TTTAAA	-27	NA	113574761	113554026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113554370_113568129_113568230_113574687
ENSMUSG00000041632.8_99481294_99552070_1	chr13	+	1719	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041650.16_122771743_123127240_1	chr14	+	2484	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-8	116	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771742	123127240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ENSMUSG00000041654.16_113135679_113456582_1	chr11	-	2656	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	195.470816236082	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_113136691_113136716_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ENSMUSG00000041654.16_113135679_113456582_2	chr11	-	2638	11	NNC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.123542139079	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_113136691_113136716_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUSG00000041671.14_142291404_142307881_1	chr6	+	1705	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	24	1102	0	104	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTTTAATGACTCATTTG	NA	False	NA	14	True	AATAAA	-19	NA	142291403	142307881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
ENSMUSG00000041712.8_102724226_102742116_1	chr12	+	1381	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	0	-1850	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCCCCTTTCCATCCT	NA	False	NA	5	True	AATAAA	-16	NA	102724225	102742116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742051_102742080
ENSMUSG00000041712.8_102724226_102743966_1	chr12	+	3231	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742051_102742080
ENSMUSG00000041716.8_102707991_102709904_1	chr12	-	1766	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	16	-498	0	498	multi-exon	FALSE	canonical	3	30	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	NA	False	NA	-23	True	AATAAA	-16	NA	102709904	102707990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102709654_102709801
ENSMUSG00000041716.8_102707991_102724062_1	chr12	-	1926	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	869	0	869	0	multi-exon	FALSE	canonical	3	96	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	6359	False	NA	-23	True	AATAAA	-16	NA	102724062	102707990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102709654_102723799
ENSMUSG00000041718.17_143101019_143107146_1	chrX	+	536	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	219	1047	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTAAGTCCAGTTCATGG	NA	False	NA	13	True	AATAAA	-20	NA	143101018	143107146	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143101019_143108193_1	chrX	+	1583	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	219	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143101018	143108193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143101019_143108193_2	chrX	+	1479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	20	-1020	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143101018	143108193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
ENSMUSG00000041733.11_115417754_115434368_1	chr5	+	1345	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	29	663	0	0	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCAGATTGGAATCTAAG	NA	False	NA	106	True	NA	NA	NA	115417753	115434368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
ENSMUSG00000041733.11_115417754_115434860_1	chr5	+	1837	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	29	171	0	-171	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGACTATGCATATAGCCC	NA	False	NA	NA	False	AAGAAA	-8	NA	115417753	115434860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
ENSMUSG00000041736.8_83454140_83458404_1	chr15	+	891	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6064	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83454139	83458404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
ENSMUSG00000041740.17_115379829_115385329_1	chr5	-	970	7	ISM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	25625	0	-1195	0	3prime_fragment	FALSE	canonical	3	1633	junction_2	42.0304122696358	689	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	-20	True	AATAAA	-20	NA	115385329	115379828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227
ENSMUSG00000041747.4_98384614_98399521_1	chr13	-	2831	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	1261	0	-1261	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGCCGAGGATGTCCT	NA	False	NA	-39	True	AATAAA	-16	NA	98399521	98384613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041747.4_98384736_98399521_1	chr13	-	2709	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	1383	0	-1383	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGAGGTGTTCCTGA	NA	False	NA	-3	True	TATAAA	-19	NA	98399521	98384735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041750.14_86893858_86896840_1	chr3	+	1280	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	247	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893857	86896840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUSG00000041765.7_122116032_122257647_1	chr14	+	1340	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	799	0	-799	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8886	False	NA	19	True	ATTAAA	-16	NA	122116031	122257647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122183726_122257647_1	chr14	+	980	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	0	-799	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	2010	False	NA	19	True	ATTAAA	-16	NA	122183725	122257647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041777.13_73114211_73142912_1	chr2	-	1915	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	-1	-762	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTCCTTAAGACTTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	73142912	73114210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
ENSMUSG00000041779.6_21071595_21149453_1	chr1	-	1420	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	0	5072	0	2942	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCCTGAGCCGCCAGAT	NA	False	NA	-2	True	AATAAA	-21	NA	21149453	21071594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
ENSMUSG00000041781.10_101942247_101970245_1	chr12	+	3294	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	0	2438	0	-2438	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTAAGCTGAGTGTGGT	NA	False	NA	NA	False	AATAAA	-17	NA	101942246	101970245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
ENSMUSG00000041782.15_135746650_135760699_1	chr1	+	2298	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	314	381	314	254	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAAGTGTCTGGTAATG	5932	False	NA	12	True	NA	NA	NA	135746649	135760699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
ENSMUSG00000041840.9_77844472_77855480_1	chr18	-	1587	10	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	795	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	423.686583440701	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAACCAAAGACCAATA	NA	False	NA	NA	False	NA	NA	NA	77855480	77844471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_77844971_77845182_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_1	chr18	-	908	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_8	436.353569367778	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854645_77855419
ENSMUSG00000041841.9_5146127_5148160_1	chr15	+	373	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	462	0	1	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	12040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2248	False	NA	37	True	AATAAA	-18	NA	5146126	5148160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ENSMUSG00000041846.16_101005771_101008835_1	chr12	-	1617	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6093	0	969	0	3prime_fragment	FALSE	canonical	3	499	junction_2	93	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTAATTGTATGTTTC	7300	False	NA	-24	True	AATAAA	-25	NA	101008835	101005770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_101007039_101008083_101008311_101008713
ENSMUSG00000041870.18_114938838_114943883_1	chr5	+	1859	4	ISM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	26100	0	1206	0	3prime_fragment	FALSE	canonical	3	412	junction_1	25.9401019444583	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGAGTTTCATTTCTC	919	False	NA	29	True	AGTAAA	-19	NA	114938837	114943883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_114938874_114939716_114939878_114941617_114941686_114942289
ENSMUSG00000041879.14_135322814_135358181_1	chr1	-	943	6	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-10	-911	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.823808380067	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAAATTTGTAACATG	NA	False	NA	NA	False	NA	NA	NA	135358181	135322813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_135322994_135336983_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
ENSMUSG00000041881.14_34043568_34044820_1	chr17	+	333	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	0	277	0	0	multi-exon	FALSE	canonical	3	8081	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4096	False	NA	11	True	NA	NA	NA	34043567	34044820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34043655_34044574
ENSMUSG00000041891.17_66116762_66135692_1	chr18	-	1724	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	18	2934	0	569	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATTTTGTTCATAGTAC	NA	False	NA	-5	True	AATAAA	-13	NA	66135692	66116761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUSG00000041912.13_94320607_94333615_1	chr3	+	1168	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	-17	80	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAAATATGTTGACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	94320606	94333615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ENSMUSG00000041920.15_109343552_109363810_1	chr11	-	2044	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	310	0	215	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	3184	False	NA	NA	False	NA	NA	NA	109363810	109343551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
ENSMUSG00000041920.15_109343552_109365804_1	chr11	-	2140	6	NNC	ENSMUSG00000041920.15	novel	2354	6	NA	NA	-1380	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	1190	False	NA	NA	False	NA	NA	NA	109365804	109343551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
ENSMUSG00000041939.15_114582347_114591211_1	chr5	+	994	7	ISM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-20	7441	0	0	5prime_fragment	FALSE	canonical	3	117	junction_1	10.1063786238637	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582346	114591211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
ENSMUSG00000041939.15_114582347_114598652_1	chr5	+	1718	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582346	114598652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUSG00000041958.11_78219241_78233608_1	chr11	+	2361	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ENSMUSG00000041966.19_70886128_70920951_1	chr2	+	2448	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	40	5251	0	329	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATATCAATTCTAGT	NA	False	NA	0	True	NA	NA	NA	70886127	70920951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
ENSMUSG00000041975.18_70794905_70885927_1	chr2	-	2119	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
ENSMUSG00000042032.14_40570141_40583464_1	chr11	-	1812	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	137	0	-9	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583464	40570140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUSG00000042032.14_40570141_40585814_1	chr11	-	1809	7	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	204.398032171436	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585814	40570140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40585629
ENSMUSG00000042032.14_40570141_40585814_2	chr11	-	1837	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	216	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585814	40570140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ENSMUSG00000042032.14_40570768_40583464_1	chr11	-	1185	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	137	627	-9	-627	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAATTGTGACACATG	NA	False	NA	NA	False	AATAAA	-22	NA	40583464	40570767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUSG00000042032.14_40570768_40585814_1	chr11	-	1210	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	216	627	0	-627	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAATTGTGACACATG	NA	False	NA	NA	False	AATAAA	-22	NA	40585814	40570767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ENSMUSG00000042079.14_117883756_117902113_1	chr6	+	1680	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	467	0	-467	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTCTCATGCAAACTTT	3734	False	NA	NA	False	ATTAAA	-15	NA	117883755	117902113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117884777_117902583_1	chr6	+	2169	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	0	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	2466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	4755	False	NA	NA	False	AATAAA	-17	NA	117884776	117902583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117884777_117902583_2	chr6	+	2208	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	0	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_1	2283.97154097856	2461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	4755	False	NA	NA	False	AATAAA	-17	NA	117884776	117902583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_117884880_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117893942_117902583_1	chr6	+	2196	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	-1240	0	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	2385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	False	NA	NA	False	AATAAA	-17	NA	117893941	117902583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042099.17_34036881_34041892_1	chr17	+	1822	9	ISM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	7387	0	0	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	4519	False	NA	13	True	AATAAA	-16	NA	34036880	34041892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_34037091_34041892_1	chr17	+	1612	9	ISM	ENSMUSG00000042099.17	ENSMUST00000234357.2	1640	10	210	-1	210	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	4729	False	NA	13	True	AATAAA	-16	NA	34037090	34041892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042111.10_34475759_34478434_1	chr1	-	1378	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	319	8	319	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCACAGAGCTCTCAT	7523	False	NA	-7	True	AATAAA	-15	NA	34478434	34475758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ENSMUSG00000042133.17_69553198_69579677_1	chr2	+	1399	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	49	4679	0	-215	multi-exon	TRUE	canonical	3	282	junction_1	41.7748260879032	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGATCACAGACACATG	NA	False	NA	24	True	AATAAA	-42	NA	69553197	69579677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042133.17_69553198_69580956_2	chr2	+	2678	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	49	3400	0	1064	multi-exon	FALSE	canonical	3	282	junction_1	41.7748260879032	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACTTTGGTGTAATACT	NA	False	NA	NA	False	AATAAA	-20	NA	69553197	69580956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042148.9_63854702_63970294_1	chr11	-	1668	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	-2	1249	0	-1249	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATATTTCT	5005	False	NA	NA	False	AAGAAA	-41	NA	63970294	63854701	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUSG00000042195.10_53679035_53725438_1	chr9	+	2345	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	213	0	213	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53679034	53725438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUSG00000042198.13_3938914_3943526_1	chr4	+	1238	4	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	2	0	0	intron_retention	FALSE	canonical	3	280	junction_1	77.5857948052062	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	-5	True	NA	28	True	ATTAAA	-21	NA	3938913	3943526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720
ENSMUSG00000042203.9_29768765_29803780_1	chr17	+	1968	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	0	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768764	29803780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
ENSMUSG00000042210.18_106317250_106324877_1	chr9	-	1261	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.56165113888	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ENSMUSG00000042210.18_106317250_106324877_2	chr9	-	1266	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ENSMUSG00000042229.10_134422386_134435623_1	chr1	+	1972	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	0	889	0	-889	multi-exon	FALSE	canonical	3	479	junction_1	0	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCATCTGTTTTCTGG	6638	False	NA	NA	False	ATTAAA	-1	NA	134422385	134435623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_134422548_134433813
ENSMUSG00000042303.20_80861980_80896272_1	chr15	+	2764	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	14	219	0	182	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCTCCCATCTTTTGT	NA	False	NA	13	True	AATAAA	-13	NA	80861979	80896272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
ENSMUSG00000042305.13_134275259_134289679_1	chr1	-	1687	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	38	1424	0	161	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGATTTGTGCATCT	NA	False	NA	0	True	AATAAA	-28	NA	134289679	134275258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_134275528_134289679_1	chr1	-	1418	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	38	1693	0	-108	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCCTCATTTTCTGTGT	NA	False	NA	-9	True	TATAAA	-38	NA	134289679	134275527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042312.11_90422299_90431888_1	chr3	+	450	3	ISM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	557	0	557	0	3prime_fragment	FALSE	canonical	3	229	junction_1	83.5	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90422298	90431888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_90422327_90423156_90423350_90431659
ENSMUSG00000042312.11_90422299_90431888_2	chr3	+	337	3	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	557	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	185	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90422298	90431888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_90422327_90423269_90423350_90431659
ENSMUSG00000042354.8_30734390_30741018_1	chr14	-	1794	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_10	218.114789100808	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741018	30734389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042354.8_30734390_30741018_2	chr14	-	1870	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	231.923511757912	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741018	30734389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042354.8_30734390_30741018_3	chr14	-	1787	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	239.182589718587	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741018	30734389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735213_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042357.3_127248991_127251974_1	chr4	-	1332	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	389	0	-389	multi-exon	FALSE	canonical	3	573	junction_1	0	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGGTGTCCTTTGGGTC	404	False	NA	-9	True	AATAAA	-19	NA	127251974	127248990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_127250167_127251818
ENSMUSG00000042363.15_20776106_20781056_1	chr11	-	832	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	2530	0	244	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTTGTGATGATTTGTG	NA	False	NA	NA	False	AATACA	-33	NA	20781056	20776105	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUSG00000042367.13_127219028_127222954_1	chr4	-	1864	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_127220806_127222868
ENSMUSG00000042367.13_127219028_127224005_1	chr4	-	1805	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	632	0	at_least_one_novel_splicesite	FALSE	canonical	3	106	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224005	127219027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_127220565_127223737
ENSMUSG00000042367.13_127219028_127224413_1	chr4	-	1656	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	224	0	224	0	multi-exon	FALSE	canonical	3	980	junction_1	0	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224413	127219027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_127220565_127224294
ENSMUSG00000042380.9_127137577_127141399_1	chr4	+	819	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	203	0	-203	multi-exon	FALSE	canonical	3	445	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCTTTCTTATTTTCCT	NA	False	NA	15	True	NA	NA	NA	127137576	127141399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_127137692_127140695
ENSMUSG00000042389.14_115521667_115555297_1	chr6	+	1690	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	0	-292	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521666	115555297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042389.14_115521667_115555297_2	chr6	+	1772	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	42	292	0	-292	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521666	115555297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042396.11_48400489_48406599_2	chr9	-	1287	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	-2	488	0	-480	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAGTCATCTGCTTAT	NA	False	NA	-10	True	AATAAA	-14	NA	48406599	48400488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUSG00000042401.9_42271971_42295569_1	chr19	-	1223	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19176	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2515	False	NA	-17	True	AATAAA	-17	NA	42295569	42271970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
ENSMUSG00000042406.9_80139385_80141742_1	chr15	+	1442	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	-1	-782	0	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	2294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
ENSMUSG00000042406.9_80139724_80141742_1	chr15	+	1386	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	339	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	2299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4484	False	NA	32	True	AATAAA	-20	NA	80139723	80141742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUSG00000042426.7_113064182_113068066_1	chr13	+	1091	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	0	645	0	-645	multi-exon	FALSE	canonical	3	291	junction_2	16	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATAGAAAAATGTGTACT	NA	False	NA	NA	False	ATTAAA	-22	NA	113064181	113068066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_113064508_113066160_113066235_113067375
ENSMUSG00000042472.12_84363892_84390498_1	chr12	+	2332	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	266	-1	0	1	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1849	False	NA	12	True	AATAAA	-17	NA	84363891	84390498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUSG00000042502.11_126792830_126795114_2	chr7	-	1370	7	NIC	ENSMUSG00000042502.11	novel	1309	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_6	200.670058110876	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126794958
ENSMUSG00000042502.11_126792830_126795114_3	chr7	-	1242	7	NIC	ENSMUSG00000042502.11	novel	2906	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_6	198.070413966571	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795086
ENSMUSG00000042502.11_126792830_126795114_4	chr7	-	1228	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	58	1998	0	0	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ENSMUSG00000042505.7_6956007_7039661_1	chr6	+	1006	2	NNC	ENSMUSG00000042505.7	novel	4323	2	NA	NA	0	-3318	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGTTGGGTGACCTA	-15	True	NA	10	True	AATAAA	-18	NA	6956006	7039661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_6956205_7038853
ENSMUSG00000042541.11_6558288_6578663_1	chr6	-	483	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	-5	994	0	-994	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	2192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTGGTTCAGATGTCT	22	False	6578685	-12	True	AATAAA	-14	NA	6578663	6558287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_6558492_6560407_6560502_6578478
ENSMUSG00000042569.14_60721505_60748972_1	chr11	+	1257	7	NNC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	0	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042569.14_60721505_60748972_2	chr11	+	1228	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	48	277	0	-277	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042606.10_126461611_126464301_1	chr7	+	2051	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	467	248	0	211	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCAAACCGTCATGC	1943	False	NA	53	True	AATAAA	-27	NA	126461610	126464301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUSG00000042613.10_89344013_89356269_1	chr3	+	2483	10	NNC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	0	-1990	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	27.4145135932695	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAGAAAAAAAA	4368	False	NA	NA	False	NA	NA	NA	89344012	89356269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353379_89353481_89353586_89353719_89354352_89355573_89355979
ENSMUSG00000042626.14_89325858_89335800_1	chr3	+	1620	13	FSM	ENSMUSG00000042626.14	ENSMUST00000191485.7	3154	13	0	1534	0	-606	multi-exon	TRUE	canonical	3	256	junction_1	89.6222008705928	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTAACTTGTGGGACCT	NA	False	NA	NA	False	NA	NA	NA	89325857	89335800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUSG00000042642.14_89310389_89319170_1	chr3	-	1779	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	0	1113	0	-415	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
ENSMUSG00000042642.14_89310389_89319170_2	chr3	-	1745	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	0	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
ENSMUSG00000042642.14_89310389_89319170_3	chr3	-	1817	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	6	415	0	-415	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
ENSMUSG00000042660.9_36893273_36896586_1	chr18	+	1342	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	277	0	-277	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTATATTCTGTGTCAT	NA	False	NA	23	True	NA	NA	NA	36893272	36896586	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
ENSMUSG00000042670.6_105734983_105795763_1	chr2	+	681	6	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	0	-140	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	170.067516004674	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_105735076_105738668_105738775_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042670.6_105734983_105795763_2	chr2	+	815	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	140	0	-140	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042682.11_29690265_29696797_1	chr14	+	856	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	0	822	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690264	29696797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042682.11_29690393_29696797_1	chr14	+	728	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	128	822	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690392	29696797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042682.11_29690393_29696966_1	chr14	+	897	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	128	653	0	169	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAGTAGTACATGTAAAT	NA	False	NA	26	True	AATAAA	-15	NA	29690392	29696966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042699.12_153353835_153363397_1	chr1	-	728	6	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	13747	0	188	5prime_fragment	FALSE	canonical	3	83	junction_2	16.7403703662733	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCCAAGGAGAATATAAGT	NA	False	NA	NA	False	AAAAAG	-5	NA	153363397	153353834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ENSMUSG00000042705.10_47091932_47221062_1	chr18	+	1405	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	-10	-795	0	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091931	47221062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042705.10_47091932_47221062_2	chr18	+	1294	5	FSM	ENSMUSG00000042705.10	ENSMUST00000234085.2	494	5	-13	-787	0	0	multi-exon	FALSE	canonical	3	159	junction_2	523.690271057235	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091931	47221062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042709.16_60291868_60307861_1	chr11	-	1381	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	16	416	0	-404	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATCAAGCCTCATTTTTA	NA	False	NA	NA	False	ATTAAA	-20	NA	60307861	60291867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUSG00000042712.11_135145828_135147653_1	chrX	+	784	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	235	0	-235	multi-exon	FALSE	canonical	3	2732	junction_2	36	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAATAACAAAATGAGCT	NA	False	NA	72	True	NA	NA	NA	135145827	135147653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUSG00000042719.18_121536057_121578204_1	chr5	+	3121	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	58	2268	0	210	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGGACCCTCATCTGG	NA	False	NA	31	True	ATTAAA	-36	NA	121536056	121578204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ENSMUSG00000042747.13_89153741_89157030_1	chr3	+	521	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	468	183	0	1	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7591	False	NA	21	True	AATAAA	-15	NA	89153740	89157030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042750.8_134967313_134968881_1	chrX	-	799	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	104	0	104	0	multi-exon	FALSE	canonical	3	901	junction_2	34	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4260	False	NA	0	True	AATAAA	-18	NA	134968881	134967312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_134967957_134968348_134968422_134968799
ENSMUSG00000042751.15_152969226_152970210_1	chr1	+	406	3	FSM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	0	133	0	-133	multi-exon	FALSE	canonical	3	57	junction_2	72	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969225	152970210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_152969301_152969782_152969860_152969956
ENSMUSG00000042808.11_76839107_76842167_1	chr12	-	908	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	106	-4	104	0	multi-exon	FALSE	canonical	3	177	junction_1	0	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTCTCTGTCTTCCTTT	NA	False	NA	-1	True	AATAAA	-20	NA	76842167	76839106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_76839775_76841927
ENSMUSG00000042831.14_30008202_30013729_1	chr7	+	1007	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	165.266451526013	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011930_30012133_30013343
ENSMUSG00000042870.16_75760333_75796132_1	chr8	+	1650	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	617	0	1	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTTCTCTTCTCCCAG	NA	False	NA	NA	False	ATTAAA	-23	NA	75760332	75796132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUSG00000042901.11_183078871_183104464_2	chr1	+	2134	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	278	1867	0	0	multi-exon	FALSE	canonical	3	74	junction_8	45.1526901978029	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGGATGGTTGTTACA	NA	False	NA	NA	False	AATAAA	-13	NA	183078870	183104464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
ENSMUSG00000043004.14_19925539_20027127_1	chr14	-	724	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	190	2912	0	184	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGGCTGACATTCTGGT	NA	False	NA	-22	True	AATAAA	-26	NA	20027127	19925538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
ENSMUSG00000043061.11_30634425_30639497_1	chr12	+	1254	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	1717	0	520	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACCGTTTGGTCTTGTTT	NA	False	NA	NA	False	AATGAA	-41	NA	30634424	30639497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
ENSMUSG00000043061.11_30634425_30641218_2	chr12	+	2954	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	3	92	junction_5	34.3941855551196	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30634424	30641218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640574_30640594
ENSMUSG00000043091.10_98928202_98935994_1	chr15	+	1555	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	-3	0	3	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	1506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	18	True	AATAAA	-25	NA	98928201	98935994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUSG00000043162.8_57666418_57669063_1	chr6	-	716	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	0	2857	0	-2857	multi-exon	FALSE	canonical	3	182	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCATAGCCGGGACAGCA	NA	False	NA	NA	False	NA	NA	NA	57669063	57666417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_57666864_57668793
ENSMUSG00000043190.15_76150886_76166681_1	chr13	-	1081	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	108	247	0	0	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166681	76150885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
ENSMUSG00000043190.15_76150886_76166681_2	chr13	-	1575	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	0	1232	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166681	76150885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
ENSMUSG00000043207.11_120918067_120955257_1	chr4	-	1615	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	181	1633	181	-1633	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTATCTCATTTCAAAA	NA	False	NA	-23	True	CATAAA	-19	NA	120955257	120918066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUSG00000043257.16_133389565_133399958_1	chr4	-	2112	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	0	1867	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
ENSMUSG00000043262.17_46575509_46608233_1	chr7	-	2029	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	42	2545	-13	-2222	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCACTGAGATTTCTTTT	NA	False	NA	NA	False	AATATA	-21	NA	46608233	46575508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
ENSMUSG00000043284.13_60755278_60769613_1	chr11	-	972	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	485	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7834	False	NA	-5	True	ATTAAA	-17	NA	60769613	60755277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60756175_60769538
ENSMUSG00000043284.13_60755278_60769613_2	chr11	-	1260	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	251	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7834	False	NA	-5	True	ATTAAA	-17	NA	60769613	60755277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60756175_60766585_60766874_60769538
ENSMUSG00000043411.16_137321518_137383654_1	chr4	+	3486	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	67	2188	0	12	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	570	False	NA	20	True	AATAAA	-32	NA	137321517	137383654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043510.13_110976947_110987643_1	chr5	-	798	6	NIC	ENSMUSG00000043510.13	novel	804	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	141.291754890369	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGCTTCTGCTAATTG	NA	False	NA	-8	True	AATAAA	-13	NA	110987643	110976946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_110977078_110978801_110978850_110982520_110982666_110983840_110983936_110984172_110984270_110987361
ENSMUSG00000043510.13_110983718_110987643_1	chr5	-	597	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	6782	0	-6771	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTCTTTGTAAATCC	NA	False	NA	NA	False	TTTAAA	-18	NA	110987643	110983717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_110983936_110984172_110984270_110987361
ENSMUSG00000043629.13_52964050_52992003_1	chr1	-	1074	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	2567	0	292	multi-exon	FALSE	canonical	3	220	junction_1	0	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAACATAAAACAAAACA	680	False	NA	NA	False	TTTAAA	-41	NA	52992003	52964049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_52964894_52991773
ENSMUSG00000043629.13_52964051_52992781_1	chr1	-	924	2	NNC	ENSMUSG00000043629.13	novel	3641	2	NA	NA	-272	291	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_1	0	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAACATAAAACAAAAC	NA	False	NA	NA	False	TTTAAA	-40	NA	52992781	52964050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_52964894_52992700
ENSMUSG00000043681.6_34073838_34080167_1	chr14	-	368	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-2777	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_2	1242	278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34080167	34073837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_34074035_34075654_34075718_34080059
ENSMUSG00000043681.6_34073838_34084293_1	chr14	-	426	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-6903	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	1267.5	285	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34084293	34073837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_34074035_34075654_34075718_34084127
ENSMUSG00000043702.10_26386174_26389685_1	chr14	-	1311	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	1353	5061	1353	-5061	multi-exon	FALSE	canonical	3	278	junction_2	18	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATAGCTTCTTCGTTT	NA	False	NA	-7	True	ATTAAA	-16	NA	26389685	26386173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_26387123_26387532_26387612_26389402
ENSMUSG00000043702.10_26386174_26390763_1	chr14	-	2389	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	275	5061	275	-5061	multi-exon	FALSE	canonical	3	278	junction_2	18	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATAGCTTCTTCGTTT	NA	False	NA	-7	True	ATTAAA	-16	NA	26390763	26386173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_26387123_26387532_26387612_26389402
ENSMUSG00000043716.14_16171530_16174626_1	chr1	-	892	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	260	11	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	23566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043801.8_17565390_17566476_1	chr17	-	944	2	Genic_Genomic	ENSMUSG00000043801.8	novel	685	1	NA	NA	-74	328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTAAACCTCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chr17_-_17566114_17566256
ENSMUSG00000043872.15_126941386_126954931_1	chr4	-	3339	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	14	499	14	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126954931	126941385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ENSMUSG00000043923.9_44321458_44329284_1	chr9	-	1141	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	582	2	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTGATTGAACCTGTA	8992	False	NA	-2	True	AATAAA	-19	NA	44329284	44321457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043962.17_126057875_126060758_1	chr4	-	1571	2	FSM	ENSMUSG00000043962.17	ENSMUST00000154702.2	609	2	511	-1473	511	0	multi-exon	FALSE	canonical	3	903	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	9548	False	NA	-3	True	AATAAA	-28	NA	126060758	126057874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_126059411_126060723
ENSMUSG00000043962.17_126072567_126096440_1	chr4	-	2361	4	NIC	ENSMUSG00000043962.17	novel	339	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	517	junction_3	151.240059361122	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6787	False	NA	NA	False	AGTAAA	-12	NA	126096440	126072566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_126074608_126080227_126080382_126088109_126088198_126096362
ENSMUSG00000043964.15_127368987_127374180_1	chr7	+	1854	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	0	142	0	-142	multi-exon	FALSE	canonical	3	68	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTATGGCTATGAATG	NA	False	NA	15	True	AATAAA	-15	NA	127368986	127374180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127369389_127372728
ENSMUSG00000043987.19_45721048_45739989_1	chr9	-	580	4	ISM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	0	42804	0	8320	5prime_fragment	FALSE	canonical	3	34	junction_3	3.85861230093008	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAAAACAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	45739989	45721047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_45721207_45729275_45729388_45734943_45735063_45739799
ENSMUSG00000044018.4_49512596_49521093_1	chr4	-	2092	3	NNC	ENSMUSG00000044018.4	novel	2114	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	143	junction_1	569	740	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_49512737_49512758_49514578_49520961
ENSMUSG00000044018.4_49513966_49521093_1	chr4	-	744	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	1370	0	-1370	multi-exon	FALSE	canonical	3	1281	junction_1	0	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTTTGTTATTCCAA	NA	False	NA	-6	True	AATAAA	-20	NA	49521093	49513965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_49514578_49520961
ENSMUSG00000044117.13_13804521_13919152_1	chr16	+	2129	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	53	212	0	-212	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGTTGCTTAGTACTCC	NA	False	NA	9	True	NA	NA	NA	13804520	13919152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
ENSMUSG00000044148.7_12521118_12539745_1	chrX	-	2537	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	162	0	162	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539745	12521117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044150.13_158315715_158376077_1	chrX	+	3341	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_11	167.554634539172	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315714	158376077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
ENSMUSG00000044211.10_48499315_48502046_1	chr6	-	2202	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-22	2173	multi-exon	FALSE	non_canonical	0	0	junction_1	220.5	564	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGCTGGAAAAATGGCT	NA	False	NA	NA	False	AATAAA	-26	NA	48502046	48499314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chr6_-_48500391_48500868_48501909_48501960
ENSMUSG00000044221.15_88807317_88821603_1	chr5	-	2009	9	ISM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	1922	0	1448	0	3prime_fragment	FALSE	canonical	3	466	junction_8	37.9570069288926	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	False	NA	-8	True	AATAAA	-26	NA	88821603	88807316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551
ENSMUSG00000044224.17_10446852_10461267_1	chr15	-	1214	8	ISM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	9335	10	226	0	3prime_fragment	FALSE	canonical	3	660	junction_1	75.8117970465585	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTGCCTTTCTGCTT	9300	False	NA	-25	True	ATTAAA	-13	NA	10461267	10446851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205
ENSMUSG00000044285.9_46321485_46322457_1	chr14	+	745	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_46321631_46321858
ENSMUSG00000044339.13_114261987_114266251_1	chr5	-	1002	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8006	False	NA	-2	True	AATAAA	-22	NA	114266251	114261986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
ENSMUSG00000044339.13_114261987_114268772_1	chr5	-	1028	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2493	0	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	5485	False	NA	-2	True	AATAAA	-22	NA	114268772	114261986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
ENSMUSG00000044442.12_87151115_87164996_1	chr16	+	1208	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	42	634	0	423	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGAAAGCTGGGTCATTT	NA	False	NA	NA	False	AAGAAA	-8	NA	87151114	87164996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUSG00000044442.12_87151115_87165400_1	chr16	+	1612	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	42	230	0	-230	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGAATCCATTCCAC	NA	False	NA	NA	False	AATAAA	-2	NA	87151114	87165400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUSG00000044475.15_59838661_59935808_1	chr10	+	1352	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044533.16_24939084_24940899_1	chr17	+	1187	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3280	junction_1	3156.98942823697	2269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_24939107_24939246_24939427_24939507_24940277_24940596_24940689_24940776
ENSMUSG00000044562.13_45282231_45288517_1	chr7	+	1363	8	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	5319	0	5319	0	3prime_fragment	FALSE	canonical	3	61	junction_1	11.5245965886278	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTGTCAAGATTTGGG	4685	False	NA	6	True	AATAAA	-19	NA	45282230	45288517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ENSMUSG00000044573.17_30944966_30961570_1	chr12	-	1425	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	1641	0	909	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGTCTGCCTGCTTCT	NA	False	NA	NA	False	AATACA	-14	NA	30961570	30944965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ENSMUSG00000044573.17_30944966_30961570_2	chr12	-	1425	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	1311	0	909	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGTCTGCCTGCTTCT	NA	False	NA	NA	False	AATACA	-14	NA	30961570	30944965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044573.17_30945698_30961570_2	chr12	-	693	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	2043	0	177	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGGTGTGGCTAAGCA	NA	False	NA	NA	False	GATAAA	-18	NA	30961570	30945697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044600.15_73319766_73324906_1	chr8	-	2132	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	26	734	0	-734	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACTGTGTGTGTGAAAAA	NA	False	NA	-39	True	GATAAA	-15	NA	73324906	73319765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
ENSMUSG00000044600.15_73320789_73324906_1	chr8	-	1109	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	26	1757	0	542	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTATTGTTGCTTGTG	NA	False	NA	-7	True	AATAAA	-16	NA	73324906	73320788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
ENSMUSG00000044681.20_28407447_28414920_1	chr5	-	1884	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	100	0	100	0	multi-exon	FALSE	canonical	3	175	junction_1	2	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28414920	28407446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUSG00000044709.7_19298689_19307320_1	chr7	-	952	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-10	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2892	False	NA	NA	False	AAGAAA	-17	NA	19307320	19298688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_19298802_19298849_19299602_19307233
ENSMUSG00000044709.7_19298689_19307761_1	chr7	-	934	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-13	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	149	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2451	False	NA	NA	False	AAGAAA	-17	NA	19307761	19298688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_19298802_19298849_19299602_19307692
ENSMUSG00000044709.7_19298871_19306893_1	chr7	-	793	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	0	-141	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	3319	False	NA	-6	True	AATAAA	-22	NA	19306893	19298870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19299602_19306831
ENSMUSG00000044715.8_105651660_105665414_1	chr12	+	496	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	572	-4	0	4	multi-exon	FALSE	canonical	3	132	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGGGTGTAAATACATT	NA	False	NA	NA	False	AATAAA	-19	NA	105651659	105665414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105651718_105664976
ENSMUSG00000044715.8_105651660_105668182_1	chr12	+	1603	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	17	1100	0	-1100	multi-exon	FALSE	canonical	3	113	junction_2	9.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTTTCCAGTATGTG	NA	False	NA	11	True	AATAAA	-15	NA	105651659	105668182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105651718_105664976_105665236_105666896
ENSMUSG00000044734.17_33026694_33035168_1	chr13	-	1299	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	619	0	-619	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTTTCTTTTGTATGT	4869	False	NA	-2	True	AATAAA	-16	NA	33035168	33026693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ENSMUSG00000044763.9_55854081_55858182_1	chr16	-	1893	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	0	1109	0	-1109	multi-exon	FALSE	canonical	3	404	junction_1	0	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGATTCTTTGAATATCAGA	7386	False	NA	-3	True	AATAAA	-23	NA	55858182	55854080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55855655_55857863
ENSMUSG00000044881.8_100186307_100189002_1	chr7	+	817	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	574	0	16	multi-exon	FALSE	canonical	3	255	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTTTCCGCAGTGACAT	7571	False	NA	12	True	AATAAA	-21	NA	100186306	100189002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_100186400_100188278
ENSMUSG00000044894.15_53319780_53321654_1	chr11	-	411	3	NNC	ENSMUSG00000044894.15	novel	405	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	195	junction_2	2757.5	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_53319978_53321362_53321530_53321608
ENSMUSG00000044894.15_53319780_53321654_2	chr11	-	490	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	0	1031	0	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	2850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_53319978_53321362
ENSMUSG00000044906.7_70585284_70605551_1	chr18	-	3218	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	0	-927	0	0	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605551	70585283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000045010.15_100833954_100834378_1	chrX	-	342	2	ISM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	2491	295	2491	0	3prime_fragment	FALSE	canonical	3	308	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100834378	100833953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_100834130_100834212
ENSMUSG00000045100.12_94477350_94580843_1	chr6	+	1074	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	38	810	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGCTTTTTATTAGCAT	NA	False	NA	NA	False	AATAAA	-32	NA	94477349	94580843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045103.20_84091901_84246192_1	chrX	+	2071	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	0	88	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCGCATGGTTTTTATAA	NA	False	NA	7	True	AATAAA	-18	NA	84091900	84246192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
ENSMUSG00000045128.10_71348023_71350056_1	chr8	-	603	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	657	0	0	multi-exon	FALSE	canonical	3	16397	junction_4	7934.97659101777	18721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045136.7_34311204_34314337_1	chr13	-	1709	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	473	0	-473	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	0	True	CATAAA	-15	NA	34314337	34311203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045136.7_34311204_34314449_1	chr13	-	1821	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	-112	473	0	-473	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	0	True	CATAAA	-15	NA	34314449	34311203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045160.15_83326473_83335378_1	chr6	+	527	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	45	1740	0	0	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	394	False	NA	26	True	ATTAAA	-26	NA	83326472	83335378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
ENSMUSG00000045237.6_69429609_69433023_1	chrX	+	968	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	126	0	126	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429608	69433023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUSG00000045251.14_127018139_127021199_1	chr7	-	894	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	-177	-379	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127018814_127020980
ENSMUSG00000045259.5_171186283_171188366_1	chr1	-	1289	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	0	269	0	-269	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCTCTGAATCCTTT	7871	False	NA	NA	False	ATTAAA	-14	NA	171188366	171186282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
ENSMUSG00000045273.9_100896182_100912317_1	chr13	-	1254	10	NNC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	-26	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	138.91484201961	457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912317	100896181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100907981_100908075_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045273.9_100896521_100912407_1	chr13	-	912	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	339	0	-339	multi-exon	FALSE	canonical	3	285	junction_6	26.2865816530031	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTCTGCTGCTTCAGTTT	NA	False	NA	-4	True	TTTAAA	-40	NA	100912407	100896520	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045302.14_31112387_31117624_1	chr5	-	2315	8	NIC	ENSMUSG00000045302.14	novel	1869	8	NA	NA	0	0	intron_retention	TRUE	canonical	3	234	junction_6	22.518926280272	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
ENSMUSG00000045302.14_31112387_31117624_2	chr5	-	2029	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	81	4190	0	0	multi-exon	FALSE	canonical	3	205	junction_7	28.1735691739616	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUSG00000045328.12_134918298_134938814_1	chr3	+	1767	16	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	0	40558	0	-13592	5prime_fragment	FALSE	canonical	3	163	junction_13	22.2784400012409	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATCAAGAGGTAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	134918297	134938814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657
ENSMUSG00000045410.19_4642489_4659137_1	chr13	-	1687	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	36	1740	-4	-1733	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTGTGTAAAGACACTG	NA	False	NA	NA	False	AATAAA	-20	NA	4659137	4642488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ENSMUSG00000045410.19_4642889_4659137_1	chr13	-	1287	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	36	2140	-4	-2133	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTTGACAGAAGTGTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	4659137	4642888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ENSMUSG00000045411.17_43896211_43901739_1	chr7	+	1898	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	59	-1173	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_43896211_43901739_2	chr7	+	2246	8	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	327.388554024301	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_43896248_43896661_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045435.10_21087505_21091868_1	chr5	+	831	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	316	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087504	21091868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_21087654_21091186
ENSMUSG00000045438.13_139323577_139330926_1	chr5	-	766	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	62	1633	-6	0	multi-exon	FALSE	canonical	3	183	junction_2	1.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGTTTGGCTTTTGAC	NA	False	NA	-18	True	AATACA	-14	NA	139330926	139323576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139324131_139328317_139328430_139330826
ENSMUSG00000045464.6_94237099_94242027_1	chr2	+	1437	2	FSM	ENSMUSG00000045464.6	ENSMUST00000152313.2	2040	2	603	0	603	0	multi-exon	FALSE	canonical	3	34	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAGAATCCTAAGTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	94237098	94242027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_94237312_94240803
ENSMUSG00000045576.17_104772396_104834176_1	chr3	+	1947	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	577	3204	0	0	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	657	False	NA	29	True	AATACA	-40	NA	104772395	104834176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ENSMUSG00000045594.11_114230176_114303445_1	chr9	+	2194	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230175	114303445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUSG00000045691.15_55332548_55336443_1	chr14	+	2523	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	307	0	307	0	multi-exon	FALSE	canonical	3	37	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332547	55336443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55333464_55334836
ENSMUSG00000045699.5_146912353_146994047_1	chr4	-	3134	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_146913241_146913745_146914532_146976152_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
ENSMUSG00000045699.5_146912353_146994047_2	chr4	-	2627	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_146913166_146913921_146914411_146976287_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
ENSMUSG00000045699.5_146912353_146994047_3	chr4	-	3198	6	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.011185910489	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_146913157_146913577_146914619_146976158_146977116_146978205_146978333_146982168_146982273_146993882
ENSMUSG00000045699.5_146976863_146994047_1	chr4	-	649	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	-63	710	0	0	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
ENSMUSG00000045751.17_24496465_24503413_1	chr4	+	1150	6	NNC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	143.521426971724	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-2	True	NA	9	True	AATAAA	-18	NA	24496464	24503413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUSG00000045752.14_142623161_142624830_1	chr7	+	1344	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	175	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142623160	142624830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUSG00000045854.5_32800282_32802267_1	chr4	+	1320	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	29	-884	0	708	multi-exon	FALSE	canonical	3	270	junction_2	3	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCATCATTAAGGAGCAT	14	True	NA	NA	False	NA	NA	NA	32800281	32802267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUSG00000045896.15_83783040_83808682_1	chr6	-	3284	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	41	657	0	-657	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCCAGGTTATTGTTA	NA	False	NA	NA	False	AATAAA	-22	NA	83808682	83783039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUSG00000045948.9_28439066_28441259_1	chr7	-	697	3	NNC	ENSMUSG00000045948.9	novel	722	3	NA	NA	-14	0	intron_retention	FALSE	canonical	3	18	junction_2	460.5	698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1630	False	NA	-5	True	AATAAA	-24	NA	28441259	28439065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28439665_28440911_28440980_28441229
ENSMUSG00000045969.9_11606851_11612477_1	chr8	+	1255	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	785	774	740	429	multi-exon	FALSE	canonical	3	454	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGTTGCTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11606850	11612477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11607046_11611417
ENSMUSG00000045969.9_11606851_11613251_1	chr8	+	2029	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	785	0	740	0	multi-exon	FALSE	canonical	3	454	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11606850	11613251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11607046_11611417
ENSMUSG00000045969.9_11608429_11612477_1	chr8	+	1198	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	773	0	429	multi-exon	FALSE	canonical	3	111	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGTTGCTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11608428	11612477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11608567_11611417
ENSMUSG00000045973.19_45398422_45408761_1	chr4	-	1934	3	FSM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	0	2499	0	819	multi-exon	FALSE	canonical	3	68	junction_2	5.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGGGGTTTTAATGCAA	-17	True	NA	NA	False	AATAAA	-19	NA	45408761	45398421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_45400180_45404726_45404836_45408694
ENSMUSG00000045983.17_20504670_20511633_1	chr16	+	1857	11	ISM	ENSMUSG00000045983.17	ENSMUST00000132320.8	5004	26	7644	-2	1830	0	3prime_fragment	FALSE	canonical	3	1581	junction_2	98.883820719064	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	5771	False	NA	16	True	ATTAAA	-16	NA	20504669	20511633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000046027.18_83281208_83290325_1	chr7	+	1231	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	41	1211	0	-1211	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGATCTCTTCCATC	NA	False	NA	38	True	TTTAAA	-40	NA	83281207	83290325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUSG00000046032.17_100141392_100266155_1	chrX	-	1110	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	4	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266155	100141391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_100255565_100266155_1	chrX	-	2371	5	NNC	ENSMUSG00000046032.17	novel	2415	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	40	junction_1	181.166187518532	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_100256360_100256403_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_100255565_100266155_2	chrX	-	988	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	14	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046133.4_101747217_101760887_1	chr4	-	1381	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9901	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760887	101747216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_101747741_101747885_101748198_101760342
ENSMUSG00000046133.4_101747217_101760887_2	chr4	-	1009	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9901	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760887	101747216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
ENSMUSG00000046139.9_11920064_11922334_1	chr19	+	1811	3	ISM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	30301	121	30257	-121	3prime_fragment	FALSE	canonical	3	277	junction_1	2	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTTTATACCTTTCT	6934	False	NA	7	True	AATAAA	-21	NA	11920063	11922334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_+_11920085_11920188_11920339_11920694
ENSMUSG00000046295.14_71858654_71862548_1	chr8	+	2076	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	-14	-421	0	0	multi-exon	TRUE	canonical	2	5	junction_4	33.431833632034	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046323.9_122603369_122607063_1	chr6	+	665	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	168	0	-168	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAACTTGTTAACCTTTA	680	False	NA	NA	False	ATTAAA	-21	NA	122603368	122607063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUSG00000046330.11_72750449_72752832_1	chr1	+	416	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7606.40918348906	33320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATTTTCGAAAGATG	NA	False	NA	33	True	ATTAAA	-20	NA	72750448	72752832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_72750483_72750830_72750964_72751306_72751384_72752660
ENSMUSG00000046330.11_72750449_72752832_2	chr1	+	418	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	140	0	56	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	33492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATTTTCGAAAGATG	NA	False	NA	33	True	ATTAAA	-20	NA	72750448	72752832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
ENSMUSG00000046338.5_127267119_127278012_1	chr2	+	2616	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	44	junction_1	48.8950470250594	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_127267142_127269172_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046351.12_23539512_23553364_1	chr13	-	2666	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	0	-1851	0	1689	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGTATAAGTAGGGTG	9020	False	NA	-10	True	AATAAA	-15	NA	23553364	23539511	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
ENSMUSG00000046364.15_109118354_109120973_1	chr7	+	557	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	601	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	5856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118353	109120973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118427_109120973_1	chr7	+	846	4	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	12965	junction_3	1855.24883027108	5485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118426	109120973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118427_109120973_2	chr7	+	737	5	NIC	ENSMUSG00000046364.15	novel	526	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6920.42061582965	5456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118426	109120973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046434.17_103148421_103153012_1	chr15	+	1466	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-438	-370	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGCTGTGTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	103148420	103153012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103148460_103153384_1	chr15	+	1799	11	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-399	2	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103148459	103153384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103153019_1	chr15	+	784	5	ISM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	2225	363	2163	-363	3prime_fragment	FALSE	canonical	3	2223	junction_1	5430.92802843124	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGTGTAAAGTTAGTC	NA	False	NA	NA	False	AATAAA	-27	NA	103151083	103153019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103153384_1	chr15	+	1149	5	ISM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	2225	-2	2163	2	3prime_fragment	FALSE	canonical	3	2223	junction_1	5430.92802843124	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103151083	103153384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103153384_2	chr15	+	990	4	ISM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	2203	-2	2163	2	3prime_fragment	FALSE	canonical	3	9291	junction_1	1808.10514689335	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103151083	103153384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103155119_1	chr15	+	512	5	ISM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	2225	0	2163	0	3prime_fragment	FALSE	canonical	3	551	junction_3	5536.34904517408	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103151083	103155119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ENSMUSG00000046516.11_38167384_38173114_1	chr16	+	457	4	NIC	ENSMUSG00000046516.11	novel	444	3	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	81	junction_3	1753.17641883398	2232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGAACCGTCTTTGTT	NA	False	NA	17	True	ATTAAA	-19	NA	38167383	38173114	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_38167570_38169602_38169692_38170038_38170094_38172987
ENSMUSG00000046562.6_115263176_115272986_1	chr5	-	1044	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	48	2567	-2	-155	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTAGCTGTGCACTGCTT	NA	False	NA	-3	True	GATAAA	-17	NA	115272986	115263175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
ENSMUSG00000046598.16_31247610_31276043_1	chr16	+	1402	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	44	1676	0	3	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTTCAATGTGGTGAATG	NA	False	NA	13	True	NA	NA	NA	31247609	31276043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046598.16_31247610_31276316_1	chr16	+	1675	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	44	1403	0	1	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTGTGCATGAAAG	NA	False	NA	26	True	AGTAAA	-16	NA	31247609	31276316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046668.10_35991858_35994741_1	chr18	+	1691	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	29017	0	4067	0	3prime_fragment	FALSE	canonical	3	329	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35991857	35994741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_+_35992510_35993702
ENSMUSG00000046671.19_134253416_134262581_1	chr4	-	1472	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	-2	555	-2	-541	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262581	134253415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ENSMUSG00000046671.19_134253416_134262581_2	chr4	-	1304	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	117	548	-2	-541	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262581	134253415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ENSMUSG00000046675.8_102710021_102711662_1	chr12	+	813	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	0	-2158	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	3	True	CATAAA	-18	NA	102710020	102711662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_102710030_102710858
ENSMUSG00000046679.17_86415356_86422947_1	chr6	+	891	3	FSM	ENSMUSG00000046679.17	ENSMUST00000203568.3	732	3	-15	-144	0	144	multi-exon	FALSE	canonical	0	0	junction_1	17.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCCACGGGGCCCCTG	1453	False	NA	NA	False	NA	NA	NA	86415355	86422947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86415466_86420708_86420958_86422415
ENSMUSG00000046707.10_96174602_96180017_1	chr8	-	485	2	ISM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	35438	1878	7325	0	3prime_fragment	FALSE	canonical	3	171	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGATGGAGCGTATTTA	NA	False	NA	-6	True	AATAAA	-13	NA	96180017	96174601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_96175047_96179977
ENSMUSG00000046711.17_27775606_27782645_1	chr17	+	1655	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232253.2	600	5	-9	-1046	0	1	multi-exon	FALSE	canonical	3	289	junction_4	2144.39797787164	3323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	AATAAA	-24	NA	27775605	27782645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781414
ENSMUSG00000046711.17_27775606_27782645_2	chr17	+	1625	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	-9	-699	0	1	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	2509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	AATAAA	-24	NA	27775605	27782645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046722.15_95136121_95142198_1	chr3	+	1205	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	78	1522	0	225	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCCCATCTTGCTATCT	1952	False	NA	39	True	ATTAAA	-23	NA	95136120	95142198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046727.14_36481827_36536033_1	chr18	+	869	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	115	117	0	0	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481826	36536033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
ENSMUSG00000046753.11_27204364_27230439_1	chr14	-	2967	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-22	1317	-22	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTCTTGTCATGTT	7504	False	NA	NA	False	AATAAA	-20	NA	27230439	27204363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ENSMUSG00000046756.11_115494751_115498140_1	chr11	+	1240	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	722	0	313	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGTTGGAAAGTTCTG	NA	False	NA	10	True	AATAAA	-15	NA	115494750	115498140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_115494977_115498140_1	chr11	+	1014	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	226	722	226	313	multi-exon	FALSE	canonical	3	642	junction_4	47.0451910401053	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGTTGGAAAGTTCTG	NA	False	NA	10	True	AATAAA	-15	NA	115494976	115498140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_115494977_115498434_1	chr11	+	1308	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	226	428	226	-428	multi-exon	FALSE	canonical	3	642	junction_4	47.0451910401053	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGGTTAAGAGTACT	NA	False	NA	9	True	AATAAA	-23	NA	115494976	115498434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046774.18_100838262_100842247_1	chrX	+	2179	6	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_2	chrX	+	2003	7	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
ENSMUSG00000046792.9_6145401_6158970_2	chr7	-	434	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	26	116	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCAGTGTTCCTTA	9626	False	NA	NA	False	AATAAA	-16	NA	6158970	6145400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUSG00000046818.8_137329433_137332279_1	chr3	+	907	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	1815	0	344	multi-exon	FALSE	canonical	3	67	junction_2	6.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	137329432	137332279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137329645_137329892_137330035_137331726
ENSMUSG00000046873.19_156333690_156381675_1	chrX	-	1891	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	36	2870	0	-2870	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGTTGAATAATTTGTA	NA	False	NA	NA	False	TTTAAA	-23	NA	156381675	156333689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ENSMUSG00000046909.10_80027504_80032979_1	chr11	-	1534	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80032979	80027503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
ENSMUSG00000046909.10_80027504_80032979_2	chr11	-	1353	4	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	123.047416334788	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80032979	80027503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_80028106_80028743_80028894_80030625_80031150_80032902
ENSMUSG00000046949.17_34148670_34169630_1	chr13	+	1046	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	0	2796	0	1	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTTGCACTGTATTAGT	NA	False	NA	14	True	AATACA	-26	NA	34148669	34169630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUSG00000047126.18_86585481_86595778_1	chr11	-	2131	9	ISM	ENSMUSG00000047126.18	ENSMUST00000060766.16	6163	32	52549	0	-1255	0	3prime_fragment	FALSE	canonical	3	1101	junction_5	58.1741727487379	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTAGAATTGCAGTTT	6588	False	NA	-7	True	AATAAA	-19	NA	86595778	86585480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713
ENSMUSG00000047187.10_8535824_8606670_1	chr4	+	845	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	180	1108	180	-1108	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGATTTTGGAGATTGTA	-11	True	NA	23	True	AATAAA	-22	NA	8535823	8606670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ENSMUSG00000047187.10_8535824_8607778_1	chr4	+	1953	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	180	0	180	0	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	-11	True	NA	86	True	NA	NA	NA	8535823	8607778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ENSMUSG00000047215.15_65545707_65548743_1	chr5	-	708	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4860.81001060355	17560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547841_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_2	chr5	-	1085	7	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_6	3067.5566643322	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_65545785_65545904_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_3	chr5	-	720	8	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	5016.85754964892	17243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_4	chr5	-	814	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	-20	-114	-1	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	1201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_5	chr5	-	785	7	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_6	3396.55881820933	6794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_6	chr5	-	1411	6	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_5	2801.23648412625	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_65545785_65545904_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_7	chr5	-	1077	7	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	44	0	-1	0	intron_retention	FALSE	canonical	3	8565	junction_1	2258.85099233118	10263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ENSMUSG00000047260.5_73067022_73067863_1	chr11	-	655	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	677	0	140	multi-exon	FALSE	canonical	3	946	junction_1	0	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCGTTCCTTGCTTAG	NA	False	NA	-22	True	ATTAAA	-13	NA	73067863	73067021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_73067578_73067764
ENSMUSG00000047342.18_62670431_62680243_1	chr11	-	1788	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	45	1218	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680243	62670430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047407.18_71151206_71156802_1	chr17	-	1450	3	NIC	ENSMUSG00000047407.18	novel	1714	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	428.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71156802	71151205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_71152268_71153166_71153394_71156641
ENSMUSG00000047534.18_65199552_65219363_1	chr12	-	1580	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-9	20044	9	0	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCAAAAAAAAAAGAT	NA	False	NA	NA	False	AAAAAG	-41	NA	65219363	65199551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ENSMUSG00000047547.15_54740758_54759157_1	chr13	-	1642	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	544	0	-544	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGCCTTAGAGCATC	7405	False	NA	NA	False	NA	NA	NA	54759157	54740757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUSG00000047547.15_54741398_54759157_1	chr13	-	1002	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	1184	0	0	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGTATCCTCATTTC	7405	False	NA	-35	True	NA	NA	NA	54759157	54741397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUSG00000047554.15_109572692_109585456_1	chr7	-	2340	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	1298	0	0	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTATCTGTCTTCTGTC	NA	False	NA	-5	True	AATACA	-21	NA	109585456	109572691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_109573053_109585456_1	chr7	-	1979	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	1659	0	-361	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCATGCATGATACATCT	NA	False	NA	-14	True	ATTAAA	-18	NA	109585456	109573052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_109573509_109585456_1	chr7	-	1523	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	2115	0	170	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAGCAAAAATGAGT	NA	False	NA	NA	False	NA	NA	NA	109585456	109573508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047583.10_154285482_154302732_1	chr3	-	1076	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	0	3414	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATGTCAAATAGGAAAAG	NA	False	NA	-15	True	AATAAA	-21	NA	154302732	154285481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ENSMUSG00000047586.5_28243021_28246540_1	chr7	-	1392	6	FSM	ENSMUSG00000047586.5	ENSMUST00000239002.2	1531	6	139	0	139	0	multi-exon	FALSE	canonical	3	10	junction_1	2.92574776766556	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCAGAGGCTGGTT	NA	False	NA	NA	False	AATAAA	-25	NA	28246540	28243020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28243698_28243846_28243986_28244663_28244760_28245580_28245633_28245714_28245778_28246175
ENSMUSG00000047613.11_154041712_154046382_1	chr4	+	1073	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	-11	-122	0	0	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041711	154046382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
ENSMUSG00000047613.11_154041712_154046382_2	chr4	+	1577	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	18	0	0	0	intron_retention	FALSE	canonical	3	743	junction_1	52	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041711	154046382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_154041780_154044205_154044320_154044987
ENSMUSG00000047648.14_11157074_11171265_1	chr10	+	2529	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	2531	0	3	multi-exon	FALSE	canonical	3	746	junction_2	70.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTGTCACTATGTATAT	7592	False	NA	NA	False	ATTAAA	-18	NA	11157073	11171265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_11157245_11165263_11167317_11170960
ENSMUSG00000047648.14_11157074_11171976_1	chr10	+	3240	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	1820	0	714	multi-exon	FALSE	canonical	3	746	junction_2	70.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGACTTTTTGAGGGG	7592	False	NA	NA	False	AATAAA	-23	NA	11157073	11171976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_11157245_11165263_11167317_11170960
ENSMUSG00000047649.10_19090777_19093408_1	chr7	-	1403	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	-2	838	0	-838	multi-exon	FALSE	canonical	3	228	junction_1	10	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAAAAGA	2156	False	NA	NA	False	NA	NA	NA	19093408	19090776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19091942_19093014_19093157_19093312
ENSMUSG00000047649.10_19091009_19093408_1	chr7	-	1171	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	-2	1070	0	-1070	multi-exon	FALSE	canonical	3	228	junction_1	10	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGCGGGTGGGTGAGA	2156	False	NA	NA	False	AAGAAA	-3	NA	19093408	19091008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19091942_19093014_19093157_19093312
ENSMUSG00000047675.16_117011031_117013281_1	chr4	-	694	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	159	7	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	11735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117013281	117011030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUSG00000047694.13_97981813_97988737_1	chrX	+	879	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	446	3886	0	0	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATATTTGCAAGGCT	NA	False	NA	26	True	ATTAAA	-36	NA	97981812	97988737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUSG00000047714.15_31072048_31094095_1	chr16	-	2385	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	0	1693	0	-1693	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTGTTAGAAGAATGTG	NA	False	NA	-14	True	AATAAA	-16	NA	31094095	31072047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31072919_31094095_1	chr16	-	1514	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	0	2564	0	-2564	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTCCCCCATTCCCAC	NA	False	NA	-6	True	AATAAA	-16	NA	31094095	31072918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31076793_31093931_1	chr16	-	1079	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	-121	0	-121	0	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093931	31076792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047721.9_126295138_126295869_1	chr7	+	375	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	530	361	0	0	multi-exon	FALSE	canonical	3	2284	junction_2	148	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1141	False	NA	22	True	ATTAAA	-17	NA	126295137	126295869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126295272_126295354_126295453_126295726
ENSMUSG00000047721.9_126295138_126296023_1	chr7	+	529	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	530	207	0	154	multi-exon	FALSE	canonical	3	2284	junction_2	148	1597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCAAGGCTTTACTGT	1141	False	NA	NA	False	AATGAA	-15	NA	126295137	126296023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126295272_126295354_126295453_126295726
ENSMUSG00000047879.18_9995433_10030024_1	chr18	-	2242	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	117	2367	-2	161	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTTGACATTTCTTTT	57	True	NA	-1	True	AATAAA	-23	NA	10030024	9995432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047879.18_9995594_10030141_1	chr18	-	2198	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	2528	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	-60	True	NA	-65	True	AATAAA	-15	NA	10030141	9995593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047881.15_64066408_64126166_1	chr5	-	2999	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	74	168	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	NA	False	NA	-13	True	AATAAA	-23	NA	64126166	64066407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047881.15_64066979_64088120_1	chr5	-	2192	4	ISM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	38046	571	0	-571	3prime_fragment	FALSE	canonical	3	541	junction_1	12.2565175405668	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGTCCTTTAAATGGTGA	5422	False	NA	NA	False	AAAAAG	-29	NA	64088120	64066978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820
ENSMUSG00000047881.15_64066979_64126240_1	chr5	-	2502	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	739	0	-571	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGTCCTTTAAATGGTGA	NA	False	NA	NA	False	AAAAAG	-29	NA	64126240	64066978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047945.7_129407583_129409778_1	chr4	+	1396	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	209	0	209	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407582	129409778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129407710_129408509
ENSMUSG00000048000.16_87254751_87283445_1	chr1	+	955	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	-1	2061	0	1	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATAGTTTCATTGTATG	NA	False	NA	NA	False	AATAAA	-16	NA	87254750	87283445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUSG00000048007.5_133438005_133442370_1	chrX	-	1177	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	244	0	244	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442370	133438004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_133439017_133442205
ENSMUSG00000048007.5_133438693_133442370_1	chrX	-	489	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	244	688	244	-688	multi-exon	FALSE	canonical	3	1175	junction_1	0	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGAGTCATGTGTATTT	NA	False	NA	NA	False	AATGAA	-26	NA	133442370	133438692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_133439017_133442205
ENSMUSG00000048100.14_108479015_108489385_1	chr3	+	1294	4	FSM	ENSMUSG00000048100.14	ENSMUST00000131814.8	596	4	1	-699	0	0	multi-exon	FALSE	canonical	3	6	junction_1	77.7988860245869	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108479069_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048118.18_71062803_71109960_1	chr12	+	1451	15	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	39	35406	0	-4075	5prime_fragment	FALSE	canonical	3	75	junction_5	9.00141712199149	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTGAAGACTCAATGGA	3420	False	NA	NA	False	AGTAAA	-14	NA	71062802	71109960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866
ENSMUSG00000048222.4_121291440_121304548_1	chr2	-	2638	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	0	724	0	-724	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGCAGTTCTTGAAGTT	9195	False	NA	-7	True	AATAAA	-15	NA	121304548	121291439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
ENSMUSG00000048222.4_121291642_121304548_1	chr2	-	2436	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	0	926	0	-926	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTTGGCCTATTTTTT	9195	False	NA	-14	True	AGTAAA	-4	NA	121304548	121291641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
ENSMUSG00000048277.16_117700494_117705109_1	chr11	+	1380	3	FSM	ENSMUSG00000048277.16	ENSMUST00000175737.2	785	3	-44	-551	0	0	multi-exon	FALSE	canonical	3	9	junction_2	289.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117700630_117703284_117703523_117704103
ENSMUSG00000048351.15_108185375_108195925_1	chr4	+	860	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	38	2816	0	45	multi-exon	FALSE	canonical	3	432	junction_2	33.5	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGAAGACACCTACGT	NA	False	NA	34	True	AGTAAA	-17	NA	108185374	108195925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108185488_108189407_108189549_108195319
ENSMUSG00000048495.17_57427399_57445630_1	chr1	-	1195	8	FSM	ENSMUSG00000048495.17	ENSMUST00000079998.13	1398	8	203	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	15.7025930524684	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048495.17_57427399_57445630_2	chr1	-	1214	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	630	3	0	0	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
ENSMUSG00000048497.12_62539643_62557180_1	chr11	+	1217	3	NNC	ENSMUSG00000048497.12	novel	366	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539642	62557180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_62539683_62555495_62556062_62556569
ENSMUSG00000048497.12_62539643_62557180_2	chr11	+	1725	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	-18	-1118	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539642	62557180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62539683_62555495
ENSMUSG00000048578.12_115285231_115296238_1	chr5	-	1764	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	4191	0	934	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTGTTGAGGACTTGAT	4724	False	NA	-40	True	NA	NA	NA	115296238	115285230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048578.12_115286030_115296238_1	chr5	-	965	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	4990	0	135	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTGGCCTTCGGAGTG	4724	False	NA	-2	True	NA	NA	NA	115296238	115286029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048668.17_128334328_128339831_1	chr6	-	1235	4	NIC	ENSMUSG00000048668.17	novel	1108	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
ENSMUSG00000048755.10_83430998_83433446_1	chr15	-	1274	2	ISM	ENSMUSG00000048755.10	ENSMUST00000229724.2	688	3	3642	-1030	3642	0	3prime_fragment	FALSE	canonical	3	226	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTCTCTCTCTCTGTG	NA	False	NA	0	True	AATAAA	-23	NA	83433446	83430997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_83432144_83433318
ENSMUSG00000048758.15_106306761_106308767_1	chr9	+	862	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	0	-396	0	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	5334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306760	106308767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306761_106308767_2	chr9	+	1018	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	7	-180	0	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	5450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306760	106308767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306906_106308767_1	chr9	+	873	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	152	-180	145	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	5470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306905	106308767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306906_106308767_2	chr9	+	717	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	145	-396	145	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	5404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306905	106308767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048897.16_79674582_79736599_1	chr7	+	2255	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	0	4979	0	5	5prime_fragment	TRUE	canonical	3	198	junction_1	67.6214955961983	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTTGAGTGCTGTGTAAC	NA	False	NA	6	True	AATAAA	-14	NA	79674581	79736599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
ENSMUSG00000048921.12_127042927_127048330_1	chr7	-	2002	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	0	1619	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTTGTCTTAAAATAATA	4357	False	NA	-3	True	ATTAAA	-12	NA	127048330	127042926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127044310_127047534_127047649_127047825
ENSMUSG00000048922.19_67914177_67952824_1	chr14	-	3233	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	235	373	0	-373	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGACTTTAAGTAGAAAT	NA	False	NA	-25	True	AATAAA	-15	NA	67952824	67914176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ENSMUSG00000048930.13_113343616_113354347_1	chr6	-	1721	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	497	630	-10	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354347	113343615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ENSMUSG00000048930.13_113343616_113354347_2	chr6	-	1775	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	134	junction_9	97.0713114476818	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354347	113343615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUSG00000048930.13_113343616_113354478_1	chr6	-	1852	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	366	630	0	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354478	113343615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ENSMUSG00000048930.13_113343616_113354478_2	chr6	-	1906	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354478	113343615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUSG00000048967.17_70340438_70354298_1	chr8	-	978	8	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	785	6	NA	NA	910	0	multi-exon	TRUE	canonical	2	10	junction_1	2773.96888730842	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70354298	70340437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000049232.4_59185855_59186799_1	chr6	+	788	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	2219	0	-2219	multi-exon	FALSE	canonical	3	130	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAGACCCATGGTAA	NA	False	NA	NA	False	AGTAAA	-39	NA	59185854	59186799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_59186167_59186323
ENSMUSG00000049305.7_108337734_108341752_1	chr9	+	1699	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	8	1385	0	-1253	multi-exon	FALSE	canonical	3	208	junction_1	0	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCGGTCTCCTTGCT	195	False	NA	10	True	NA	NA	NA	108337733	108341752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108337817_108340136
ENSMUSG00000049422.8_75771734_75773581_1	chr10	+	634	4	FSM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	327	-22	327	0	multi-exon	FALSE	canonical	3	15821	junction_1	833.259196702256	1404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408
ENSMUSG00000049482.17_123202952_123208486_2	chr8	+	1651	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	70	1345	0	3	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACAGTACTTGTGGGAA	8932	False	NA	17	True	AATAAA	-19	NA	123202951	123208486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUSG00000049517.9_91071260_91072849_1	chr13	+	534	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	183	220	-76	6	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	32998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071259	91072849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
ENSMUSG00000049517.9_91071260_91073069_1	chr13	+	754	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	183	0	-76	0	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	33242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTCTATAGGATAATT	NA	False	NA	27	True	AATAAA	-23	NA	91071259	91073069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
ENSMUSG00000049670.10_42063378_42074796_1	chr19	-	1901	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTTATGAACTTTCTG	4140	False	NA	0	True	AATAAA	-24	NA	42074796	42063377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
ENSMUSG00000049670.10_42063378_42074796_2	chr19	-	1918	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTTATGAACTTTCTG	4140	False	NA	0	True	AATAAA	-24	NA	42074796	42063377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
ENSMUSG00000049760.7_56914620_56916702_1	chr17	-	518	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	69	168	-20	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916702	56914619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUSG00000049760.7_56914620_56916702_2	chr17	-	501	4	NNC	ENSMUSG00000049760.7	novel	755	4	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	297	junction_2	811.365241771889	683	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916702	56914619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_56914842_56915637_56915693_56915862_56916024_56916639
ENSMUSG00000049760.7_56914620_56916829_1	chr17	-	645	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	-58	168	-58	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916829	56914619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUSG00000049775.17_165990089_165992157_1	chrX	-	614	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	154	0	-12	0	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165992157	165990088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_165990532_165990932_165991048_165992101
ENSMUSG00000049792.7_111675922_111679529_1	chr12	-	1977	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	162	0	-142	0	multi-exon	FALSE	canonical	3	159	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679529	111675921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_111677847_111679477
ENSMUSG00000049881.14_157240210_157247805_1	chr1	+	905	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	288	1	0	-1	multi-exon	FALSE	canonical	3	989	junction_1	26.5	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGGCCCAGTGTCTT	NA	False	NA	34	True	AATAAA	-16	NA	157240209	157247805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_157240696_157241313_157241366_157247438
ENSMUSG00000049881.14_157240332_157247805_1	chr1	+	783	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	410	1	122	-1	multi-exon	FALSE	canonical	3	989	junction_1	26.5	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGGCCCAGTGTCTT	NA	False	NA	34	True	AATAAA	-16	NA	157240331	157247805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_157240696_157241313_157241366_157247438
ENSMUSG00000049882.11_69624402_69629791_1	chr12	-	1016	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	93	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629791	69624401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUSG00000049882.11_69624402_69629791_2	chr12	-	1005	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	93	-223	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629791	69624401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ENSMUSG00000049916.13_16931263_16939548_1	chr16	-	1026	7	NIC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	108.073149096136	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16939548	16931262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16939527
ENSMUSG00000049916.13_16931263_16943004_1	chr16	-	1131	7	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	233	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
ENSMUSG00000049960.5_20441295_20443593_1	chr14	-	540	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	109	1923	-42	0	multi-exon	FALSE	canonical	3	1591	junction_2	40	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8636	False	NA	-36	True	AATAAA	-14	NA	20443593	20441294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20441529_20441960_20442222_20443548
ENSMUSG00000049960.5_20441295_20443702_1	chr14	-	649	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	0	1923	0	0	multi-exon	FALSE	canonical	3	1591	junction_2	40	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8527	False	NA	-36	True	AATAAA	-14	NA	20443702	20441294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20441529_20441960_20442222_20443548
ENSMUSG00000049971.18_127709326_127744802_1	chr5	+	736	7	NNC	ENSMUSG00000049971.18	novel	1713	11	NA	NA	0	-22133	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	12.7986544431653	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCTTGGTCATGGTG	8701	False	NA	NA	False	NA	NA	NA	127709325	127744802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127744557
ENSMUSG00000050029.8_50093170_50106902_1	chrX	-	3171	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	-7	381	-7	-381	multi-exon	FALSE	canonical	3	105	junction_1	4	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGAGGCTTGTCTCTTT	NA	False	NA	-8	True	AATAAA	-14	NA	50106902	50093169	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_50095628_50103847_50104161_50106502
ENSMUSG00000050043.17_84501838_84508410_1	chr2	-	1810	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	-10	177	-10	-177	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCATCATTGGAAATAGA	5281	False	NA	NA	False	ATTAAA	-16	NA	84508410	84501837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUSG00000050052.13_14002008_14025032_1	chr8	-	2478	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	0	-2105	0	0	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4525	False	NA	-4	True	ATTAAA	-18	NA	14025032	14002007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
ENSMUSG00000050052.13_14002486_14024743_1	chr8	-	1951	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	34	478	0	-356	multi-exon	FALSE	canonical	3	271	junction_2	12.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGAAATTATGGAGATT	4814	False	NA	-6	True	AATAAA	-20	NA	14024743	14002485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUSG00000050079.11_95328565_95385497_1	chr8	+	2446	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	0	1406	0	-884	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAAACATCTCTAACCAG	8111	False	NA	NA	False	AAAAAG	-11	NA	95328564	95385497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ENSMUSG00000050088.10_15163492_15165248_2	chr17	+	1510	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	46	950	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163491	15165248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_15163582_15163828
ENSMUSG00000050122.20_37139612_37180417_1	chr1	+	1533	9	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	71198	46269	0	0	internal_fragment	TRUE	canonical	3	35	junction_7	9.96164519544839	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139611	37180417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_+_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050150.17_135053807_135064075_1	chr3	+	1443	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	-247	0	8	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCATTGTTTTTTCT	NA	False	NA	NA	False	AAGAAA	-2	NA	135053806	135064075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
ENSMUSG00000050150.17_135053807_135080462_1	chr3	+	1625	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-12	18382	0	0	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135053806	135080462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
ENSMUSG00000050150.17_135053807_135099879_1	chr3	+	1856	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053806	135099879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050212.5_126042325_126043658_1	chr4	+	730	2	NIC	ENSMUSG00000050212.5	novel	1144	2	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_126042425_126043028
ENSMUSG00000050212.5_126042325_126043658_2	chr4	+	892	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	788	9	0	0	multi-exon	FALSE	canonical	3	53	junction_1	143	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_126042425_126042676_126042839_126043028
ENSMUSG00000050212.5_126042325_126043658_3	chr4	+	825	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	529	10	0	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_126042425_126042743_126042839_126043028
ENSMUSG00000050332.8_94470950_94488478_1	chrX	-	1470	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	0	7026	0	-7026	multi-exon	FALSE	canonical	3	18	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	94488478	94470949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_94472205_94488263
ENSMUSG00000050410.16_35823631_35827717_1	chr17	-	1613	4	NIC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	19.7989898732233	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9337	False	NA	-5	True	AATAAA	-20	NA	35827717	35823630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_35824082_35825370_35825918_35826774_35827328_35827655
ENSMUSG00000050471.18_35128531_35179076_1	chr9	-	1620	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	25	215	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050471.18_35128531_35179076_2	chr9	-	1392	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	270	0	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050552.9_138254016_138257657_1	chr5	+	605	4	FSM	ENSMUSG00000050552.9	ENSMUST00000062067.8	877	4	272	0	-77	0	multi-exon	FALSE	canonical	3	258	junction_1	67.9084350839832	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGTGCACAGAATGGT	NA	False	NA	35	True	AATAAA	-27	NA	138254015	138257657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138254066_138254514_138254596_138256916_138257035_138257301
ENSMUSG00000050555.10_35472116_35481399_1	chr9	-	1678	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	295	0	-6	0	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	51	True	ATTAAA	-17	NA	35481399	35472115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ENSMUSG00000050565.17_155911472_155928544_1	chr1	+	1760	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	731	0	-731	multi-exon	FALSE	canonical	3	72	junction_1	87	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155911471	155928544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155911667_155916820_155916881_155927039
ENSMUSG00000050565.17_155916636_155928544_1	chr1	+	1678	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-27	938	0	-731	multi-exon	FALSE	canonical	3	163	junction_1	41.5	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155916635	155928544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUSG00000050565.17_155916636_155928544_2	chr1	+	1618	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	-27	938	0	-731	multi-exon	FALSE	canonical	3	145	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155916635	155928544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155916749_155927039
ENSMUSG00000050565.17_155916636_155929276_1	chr1	+	2410	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-27	206	0	1	multi-exon	FALSE	canonical	3	163	junction_1	41.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGGTTTTATTGTTT	NA	False	NA	4	True	AATAAA	-16	NA	155916635	155929276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUSG00000050565.17_155916636_155929276_2	chr1	+	2350	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	-27	206	0	1	multi-exon	FALSE	canonical	3	145	junction_1	0	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGGTTTTATTGTTT	NA	False	NA	4	True	AATAAA	-16	NA	155916635	155929276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155916749_155927039
ENSMUSG00000050608.12_138831102_138858349_1	chr4	-	497	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	75	1977	-44	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	2159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCAAGCAATGCCTTT	5254	False	NA	-20	True	AATAAA	-16	NA	138858349	138831101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
ENSMUSG00000050619.15_120996118_121001606_1	chr2	-	2603	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	0	4941	0	-496	5prime_fragment	FALSE	canonical	3	33	junction_1	2	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	121001606	120996117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_120997200_120999679_120999885_121000290
ENSMUSG00000050668.11_79142996_79152787_1	chr17	+	1206	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	-22	2950	0	0	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAAGTGATGTGGCATT	8830	False	NA	8	True	AATACA	-20	NA	79142995	79152787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050668.11_79143018_79152671_1	chr17	+	1068	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	3066	0	-116	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCTTTGTATAGCACT	8852	False	NA	12	True	AATAAA	-28	NA	79143017	79152671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050697.10_5173373_5208414_1	chr15	+	1659	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	0	2959	0	-2959	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAATTTTGCTTATTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	5173372	5208414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_5173373_5208414_2	chr15	+	1565	8	NIC	ENSMUSG00000050697.10	novel	4618	9	NA	NA	0	-2959	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAATTTTGCTTATTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	5173372	5208414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050705.16_36203569_36207995_1	chr17	-	1111	6	NIC	ENSMUSG00000050705.16	novel	1193	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	147.212227752996	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36207995	36203568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207936
ENSMUSG00000050732.10_72362211_72367542_1	chr6	-	671	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	144	5	144	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTACGAGGCGCTTTACTC	8237	False	NA	-23	True	AATAAA	-20	NA	72367542	72362210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72362637_72365244_72365404_72367456
ENSMUSG00000050737.14_30781792_30793309_1	chr2	-	1338	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	2309	0	502	multi-exon	FALSE	canonical	3	78	junction_1	10.5	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGGTGTCTAAGACCCA	8411	False	NA	NA	False	ATTAAA	-22	NA	30793309	30781791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30782839_30790878_30790962_30793101
ENSMUSG00000050786.9_49296241_49317708_1	chr6	+	1510	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	33	808	0	-804	multi-exon	FALSE	canonical	3	46	junction_2	7.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTGTTGGTTTGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	49296240	49317708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUSG00000050786.9_49296359_49317708_1	chr6	+	1392	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	151	808	118	-804	multi-exon	FALSE	canonical	3	46	junction_2	7.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTGTTGGTTTGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	49296358	49317708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUSG00000050786.9_49296359_49318519_1	chr6	+	2203	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	151	-3	118	3	multi-exon	FALSE	canonical	3	46	junction_2	7.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTATTTTTGGTTTGGTT	NA	False	NA	18	True	AATAAA	-22	NA	49296358	49318519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUSG00000050891.11_58772823_58805587_1	chr15	-	862	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	26.3417918904542	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050914.17_46449939_46452904_1	chr8	-	685	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
ENSMUSG00000050973.12_79882613_79889556_1	chr7	+	1936	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	2253	0	-2253	multi-exon	FALSE	canonical	3	81	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTGTTGTTGTTTTC	NA	False	NA	8	True	AGTAAA	-11	NA	79882612	79889556	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79882954_79887961
ENSMUSG00000051007.16_140988097_140993989_1	chr7	-	1448	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	60	390	0	0	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGTTGTTGTTTGTTT	5497	False	NA	-1	True	NA	NA	NA	140993989	140988096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051159.17_101290987_101295686_1	chrX	-	800	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	101	0	101	0	multi-exon	FALSE	canonical	3	131	junction_2	38	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295686	101290986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101295639
ENSMUSG00000051176.7_43748100_43758912_1	chr8	-	1832	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	1061	0	at_least_one_novel_splicesite	FALSE	canonical	3	231	junction_3	1920.37050823243	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43758912	43748099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758716
ENSMUSG00000051176.7_43748100_43759973_1	chr8	-	1867	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	2131.08874756543	968	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
ENSMUSG00000051176.7_43748100_43760094_1	chr8	-	1988	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	2131.08874756543	3336	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43760094	43748099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
ENSMUSG00000051176.7_43748230_43760039_1	chr8	-	1668	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-22	126	-22	-126	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGATTTTTGTTTTTC	NA	False	NA	NA	False	AATACA	-16	NA	43760039	43748229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUSG00000051223.15_58432291_58444290_1	chr1	+	1420	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	2222	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTCTTACATCTTCCT	891	False	NA	NA	False	AGTAAA	-41	NA	58432290	58444290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051223.15_58432291_58444646_1	chr1	+	1776	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	1866	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAAGGGCAATGATTT	891	False	NA	-2	True	ATTAAA	-18	NA	58432290	58444646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051223.15_58432291_58445712_1	chr1	+	2842	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	800	0	-800	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTATAGATCAGTCTTT	891	False	NA	23	True	AATAAA	-18	NA	58432290	58445712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051234.7_96353407_96360648_1	chr9	-	735	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	80	417	-7	409	multi-exon	FALSE	canonical	3	1085	junction_1	10	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTCCTAATCCTTTTT	3793	False	NA	-1	True	AATAAA	-16	NA	96360648	96353406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_96353906_96356010_96356059_96360460
ENSMUSG00000051238.7_21867051_21869560_1	chr9	+	1815	3	NNC	ENSMUSG00000051238.7	novel	1838	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	36	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_21867301_21867972_21869149_21869171
ENSMUSG00000051256.11_113419571_113425173_1	chr6	+	975	2	NNC	ENSMUSG00000051256.11	novel	1147	2	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_1	0	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAGACTGTCCTGTGCCT	NA	False	NA	16	True	AATAAA	-20	NA	113419570	113425173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_113419591_113424218
ENSMUSG00000051257.4_138234610_138238918_1	chrX	+	967	4	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	178	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	3	junction_2	1323.99756629518	1639	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234609	138238918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_138235157_138237570_138237719_138237751_138237800_138238694
ENSMUSG00000051257.4_138234610_138238918_2	chrX	+	1000	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	178	0	178	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	1882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234609	138238918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051257.4_138234734_138238918_1	chrX	+	876	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	302	0	302	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234733	138238918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051257.4_138234894_138238918_1	chrX	+	716	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	462	0	462	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234893	138238918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051316.9_37775075_37777257_1	chr18	-	1771	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	1531	0	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	37777257	37775074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_37776586_37776997
ENSMUSG00000051316.9_37776200_37777257_1	chr18	-	646	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	2656	0	-2656	multi-exon	FALSE	canonical	3	1260	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAGGACAAAGAGAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	37777257	37776199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_37776586_37776997
ENSMUSG00000051319.7_127633666_127634408_1	chr2	-	442	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	358	0	-358	multi-exon	FALSE	canonical	3	537	junction_1	0	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATCTTTTTCCTCCTC	NA	False	NA	-11	True	AATAAA	-13	NA	127634408	127633665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127633753_127634053
ENSMUSG00000051329.14_90544151_90566672_1	chr2	+	2327	14	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	36592	0	-3752	0	3prime_fragment	FALSE	canonical	3	510	junction_2	69.9022986814221	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATATTAAGATTTAT	NA	False	NA	16	True	AATAAA	-18	NA	90544150	90566672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ENSMUSG00000051346.10_128045952_128047687_1	chr10	-	1419	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	-11	175	-11	-175	multi-exon	FALSE	canonical	3	299	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGTGAAACAGTTGAATA	NA	False	NA	-7	True	AATAAA	-25	NA	128047687	128045951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128047261_128047577
ENSMUSG00000051355.19_22849764_22932259_1	chr11	-	837	4	NNC	ENSMUSG00000051355.19	novel	1459	4	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	1024.12705374979	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTGGGTAAAAAAGAG	NA	False	NA	-36	True	AATATA	-5	NA	22932259	22849763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_22850058_22906152_22906233_22906410_22906693_22932078
ENSMUSG00000051355.19_22849764_22932259_2	chr11	-	757	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	123	3628	-7	0	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTGGGTAAAAAAGAG	NA	False	NA	-36	True	AATATA	-5	NA	22932259	22849763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_22850058_22906410_22906693_22932078
ENSMUSG00000051469.15_24145325_24153427_1	chr18	-	3220	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	-50	-1657	0	1657	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153427	24145324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
ENSMUSG00000051469.15_24145325_24153867_1	chr18	-	3166	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	2566	0	1657	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153867	24145324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ENSMUSG00000051469.15_24146982_24153867_1	chr18	-	1509	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	4223	0	0	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153867	24146981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ENSMUSG00000051483.10_93404777_93407232_1	chr16	+	1024	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	52	161	0	0	multi-exon	FALSE	canonical	3	426	junction_1	12.5	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAAATGTTTTTAAGTT	NA	False	NA	15	True	AATAAA	-27	NA	93404776	93407232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUSG00000051483.10_93405120_93407232_1	chr16	+	681	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	395	161	343	0	multi-exon	FALSE	canonical	3	426	junction_1	12.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAAATGTTTTTAAGTT	NA	False	NA	15	True	AATAAA	-27	NA	93405119	93407232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUSG00000051510.14_120519159_120524215_1	chr11	-	1496	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	211	3216	167	674	multi-exon	FALSE	canonical	3	302	junction_2	28	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCTGCGAGCCTACCG	7569	False	NA	NA	False	TATAAA	-32	NA	120524215	120519158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120520563_120520643_120520708_120524187
ENSMUSG00000051517.15_43496142_43499669_1	chr4	-	2146	7	NIC	ENSMUSG00000051517.15	novel	1659	9	NA	NA	-8	0	intron_retention	FALSE	canonical	3	106	junction_4	12.5088857306405	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	-22	True	NA	-3	True	AATAAA	-18	NA	43499669	43496141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUSG00000051518.9_80144816_80148485_1	chr15	-	820	4	NNC	ENSMUSG00000051518.9	novel	838	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	383.503150791055	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148485	80144815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_80145332_80145497_80145596_80148183_80148319_80148414
ENSMUSG00000051518.9_80144816_80148485_2	chr15	-	973	3	NIC	ENSMUSG00000051518.9	novel	838	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	697	junction_2	77.5	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148485	80144815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_80145596_80148183_80148319_80148427
ENSMUSG00000051557.16_155906980_155976183_1	chr4	-	1357	9	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	65356	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.805387716352	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	9135	False	NA	NA	False	NA	NA	NA	155976183	155906979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_155907143_155973312_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_155906980_155976183_2	chr4	-	1475	8	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	65356	intron_retention	FALSE	canonical	0	0	junction_1	125.938760628217	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	9135	False	NA	NA	False	NA	NA	NA	155976183	155906979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_155907143_155973312_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975873_155976087
ENSMUSG00000051557.16_155973319_155976183_1	chr4	-	1963	7	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	293	junction_5	37.4985184892535	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9135	False	NA	NA	False	AATAAA	-14	NA	155976183	155973318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051579.11_135070830_135072952_1	chrX	-	1111	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	0	-2	0	multi-exon	FALSE	canonical	3	703	junction_2	29	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135072952	135070829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051579.11_135071073_135072952_1	chrX	-	868	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	243	-2	-243	multi-exon	FALSE	canonical	3	703	junction_2	29	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGTGGTGTGTTTT	NA	False	NA	-14	True	NA	NA	NA	135072952	135071072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051579.11_135071308_135072952_1	chrX	-	633	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	478	-2	326	multi-exon	FALSE	canonical	3	703	junction_2	29	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTTATGTAGTTTCG	NA	False	NA	-13	True	NA	NA	NA	135072952	135071307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051705.14_59643753_59657910_1	chr9	-	1449	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	22	2211	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6440	False	NA	-22	True	AATAAA	-15	NA	59657910	59643752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_59645152_59657860
ENSMUSG00000051730.16_69710858_69715941_1	chr2	-	899	3	ISM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	7	2766	0	-2766	5prime_fragment	FALSE	canonical	3	609	junction_2	8.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGGATTTTTCCTTGT	6824	False	NA	NA	False	TATAAA	-26	NA	69715941	69710857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_69711293_69711640_69711756_69715592
ENSMUSG00000051735.8_28495421_28498379_1	chr7	+	2086	5	ISM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	7027	0	-942	0	3prime_fragment	FALSE	canonical	3	40	junction_1	3.11247489949718	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACGAGCAATGGAGGTGC	NA	False	NA	3	True	AATAAA	-13	NA	28495420	28498379	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
ENSMUSG00000051768.10_24246758_24272863_1	chr7	+	1972	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	183	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246757	24272863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ENSMUSG00000051811.15_4754791_4756025_1	chr7	-	1132	2	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	intron_retention	FALSE	canonical	3	803	junction_1	0	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_4755849_4755951
ENSMUSG00000051811.15_4754791_4756025_2	chr7	-	1103	2	ISM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	-3	0	-3	0	intron_retention	FALSE	canonical	0	0	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_4754975_4755106
ENSMUSG00000051811.15_4754791_4756025_3	chr7	-	1150	2	FSM	ENSMUSG00000051811.15	ENSMUST00000182272.2	519	2	-498	-133	-3	0	multi-exon	FALSE	canonical	3	648	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4754975_4755059
ENSMUSG00000051950.11_149601695_149664665_1	chr5	+	1090	11	NNC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	0	-9935	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_10	165.154503420282	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATGAGTGTTTGTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	149601694	149664665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149664505
ENSMUSG00000051978.10_14077561_14140301_1	chr8	-	1621	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ENSMUSG00000051978.10_14077894_14140301_1	chr8	-	1224	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	333	0	-333	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140301	14077893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ENSMUSG00000051978.10_14077894_14140301_2	chr8	-	1288	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	0	-333	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140301	14077893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ENSMUSG00000052033.14_170353365_170360787_1	chr2	+	469	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	210	256	0	5	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCCTTCTCCAAATGAAA	4052	False	NA	15	True	AATAAA	-25	NA	170353364	170360787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052033.14_170353365_170360987_1	chr2	+	669	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	210	56	0	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4052	False	NA	12	True	ATTAAA	-15	NA	170353364	170360987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052139.19_31855350_32242306_1	chr5	+	1566	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	322	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052139.19_31855350_32242306_2	chr5	+	1491	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_5	219.40148130767	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052146.17_27849396_27854268_1	chr17	-	632	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	251	4	-50	0	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	11756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854268	27849395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUSG00000052180.16_34063799_34089218_1	chr13	-	1215	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089218	34063798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
ENSMUSG00000052214.10_18962259_18980580_1	chr7	+	2153	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	0	1213	0	-1213	multi-exon	FALSE	canonical	3	147	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGTAAAAAAGACAACCA	3233	False	NA	NA	False	NA	NA	NA	18962258	18980580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_18962510_18978678
ENSMUSG00000052253.7_25985235_25997515_1	chr15	+	967	6	FSM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	783	1052	783	2	multi-exon	TRUE	canonical	3	450	junction_2	26.9962960422351	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTATTTGAGCAGTGTT	749	False	NA	17	True	AATAAA	-24	NA	25985234	25997515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_25985270_25986883_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
ENSMUSG00000052293.15_100788134_100792568_1	chr13	+	1281	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	42	-545	0	0	multi-exon	FALSE	canonical	3	39	junction_1	620	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100788133	100792568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100788295_100790698_100790792_100791541
ENSMUSG00000052334.12_41761473_41825778_1	chr14	+	1609	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	0	intron_retention	TRUE	canonical	3	21	junction_4	63.2262252198845	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761472	41825778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052334.12_41761473_41825778_2	chr14	+	1879	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	0	intron_retention	FALSE	canonical	3	21	junction_4	63.0672040146241	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761472	41825778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052337.16_71808315_71852241_1	chr6	+	2693	14	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	21	junction_10	452.789447783038	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808314	71852241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71808315_71852241_2	chr6	+	2726	14	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	424.422768463866	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808314	71852241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71808416_71852241_1	chr6	+	2592	14	NIC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	452.789447783038	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808415	71852241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71840151_71852241_1	chr6	+	1531	5	ISM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	31757	0	-382	0	3prime_fragment	FALSE	canonical	3	21	junction_1	629.127322169368	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	8704	False	NA	12	True	AATAAA	-19	NA	71840150	71852241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052397.9_7005674_7008442_1	chr17	-	1526	3	ISM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	41741	234	1778	-234	3prime_fragment	FALSE	canonical	3	975	junction_1	45.5	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	-1	True	AATAAA	-14	NA	7008442	7005673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_7006867_7007028_7007281_7008361
ENSMUSG00000052397.9_7005674_7050183_1	chr17	-	2930	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	234	0	-234	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	-1	True	AATAAA	-14	NA	7050183	7005673	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUSG00000052397.9_7006008_7008442_1	chr17	-	1192	3	ISM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	41741	568	1778	-568	3prime_fragment	FALSE	canonical	3	975	junction_1	45.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCATGTAACCGAGACAC	NA	False	NA	-9	True	AATAAA	-16	NA	7008442	7006007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_7006867_7007028_7007281_7008361
ENSMUSG00000052397.9_7006008_7050183_1	chr17	-	2596	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	568	0	-568	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCATGTAACCGAGACAC	NA	False	NA	-9	True	AATAAA	-16	NA	7050183	7006007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUSG00000052419.8_13869799_13871465_1	chr6	-	1060	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2065	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052419.8_13869859_13871465_1	chr6	-	1000	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2125	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	0	True	NA	NA	False	AATAGA	-32	NA	13871465	13869858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052419.8_13870125_13871465_1	chr6	-	734	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2391	0	-125	multi-exon	FALSE	canonical	3	64	junction_2	22	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCCTCTTGCATTCTG	0	True	NA	-4	True	AGTAAA	-16	NA	13871465	13870124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052423.16_171097898_171104468_1	chr1	+	1966	9	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	46	junction_8	69.4041605381118	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678_171104391_171104422
ENSMUSG00000052423.16_171097898_171104468_2	chr1	+	2105	9	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052428.11_167136305_167158354_1	chr1	+	1215	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	358	0	0	0	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167136304	167158354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ENSMUSG00000052446.18_72704935_72724177_1	chr8	+	2632	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	24	-2055	0	0	multi-exon	FALSE	canonical	3	96	junction_2	182.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704934	72724177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72705005_72719637_72719765_72721742
ENSMUSG00000052456.10_85744560_85751910_1	chr8	-	1321	7	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	109	junction_5	750.461950327189	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746603_85750806_85750955_85751733
ENSMUSG00000052459.14_43905765_43959404_1	chr16	-	3970	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	0	-23	0	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	0	True	AATAAA	-18	NA	43959404	43905764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_43905765_43959404_2	chr16	-	3984	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	155	-243	-23	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	0	True	AATAAA	-18	NA	43959404	43905764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUSG00000052459.14_43906637_43959404_1	chr16	-	3098	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	872	-23	-629	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCAATTTTTGTCTT	NA	False	NA	NA	False	AAAAAG	-8	NA	43959404	43906636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_43906637_43959404_2	chr16	-	3112	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	155	629	-23	-629	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCAATTTTTGTCTT	NA	False	NA	NA	False	AAAAAG	-8	NA	43959404	43906636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUSG00000052459.14_43907148_43959404_1	chr16	-	2587	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	1383	-23	-1140	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGTGGTCAAACTTA	NA	False	NA	NA	False	GATAAA	-41	NA	43959404	43907147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_43907148_43959404_2	chr16	-	2601	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	155	1140	-23	-1140	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGTGGTCAAACTTA	NA	False	NA	NA	False	GATAAA	-41	NA	43959404	43907147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUSG00000052544.10_152909104_153065693_1	chr3	-	2352	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065693	152909103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_152911229_152912254_152912363_153065574
ENSMUSG00000052681.9_117650373_117681825_1	chr10	-	2012	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	115	597	115	-597	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATAGGTGTTATTTTAC	8720	False	NA	-18	True	AATAAA	-21	NA	117681825	117650372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
ENSMUSG00000052681.9_117650448_117681759_1	chr10	-	1871	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	181	672	181	-672	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTTGCCACTGAATGTG	8786	False	NA	14	True	AATAAA	-32	NA	117681759	117650447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
ENSMUSG00000052707.9_122723404_122743024_1	chr7	+	252	3	ISM	ENSMUSG00000052707.9	ENSMUST00000206888.2	3625	9	-75	33891	0	-18862	5prime_fragment	FALSE	canonical	3	106	junction_2	15.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGACAAGAAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	122723403	122743024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_122723556_122723890_122723939_122742972
ENSMUSG00000052712.18_29487762_29520499_1	chr17	+	1444	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	-173	-1	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	311	False	NA	15	True	AATAAA	-16	NA	29487761	29520499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_29487899_29520499_1	chr17	+	1219	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	100	12540	0	0	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	448	False	NA	15	True	AATAAA	-16	NA	29487898	29520499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_29487899_29520499_2	chr17	+	888	7	NIC	ENSMUSG00000052712.18	novel	1073	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	129.043920171906	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	448	False	NA	15	True	AATAAA	-16	NA	29487898	29520499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_29487977_29496830_29496922_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052738.15_73225635_73253890_1	chr6	+	1245	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	270	4	0	3	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	929	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTGTGAAGACTTTTT	2585	False	NA	15	True	AATAAA	-19	NA	73225634	73253890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
ENSMUSG00000052748.15_151244115_151304187_1	chr1	-	3004	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	19	665	0	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304187	151244114	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ENSMUSG00000052752.16_24727824_24746820_1	chr17	-	2621	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_19	108.442277272289	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737769_24738104_24738221_24746739
ENSMUSG00000052752.16_24727824_24746820_2	chr17	-	2623	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	92	288	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052763.8_47897558_47909573_1	chr6	+	2653	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	148	0	148	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897557	47909573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
ENSMUSG00000052776.11_121034782_121045584_1	chr5	-	1464	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	0	-463	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	226.213026444839	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_121035088_121035242_121035312_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052776.11_121034782_121045584_2	chr5	-	1422	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	463	0	-463	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052794.14_73197776_73214385_1	chr8	+	2375	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	52	460	0	-100	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCTGCTTGTTTA	NA	False	NA	6	True	AGTAAA	-21	NA	73197775	73214385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
ENSMUSG00000052906.8_34110781_34131995_1	chr8	-	1641	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	1167	0	-1167	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCTTAAGGTATCTTT	4670	False	NA	0	True	NA	NA	NA	34131995	34110780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052906.8_34111037_34131995_1	chr8	-	1385	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	1423	0	-1423	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAATGTGAACTGTCGT	4670	False	NA	0	True	AGTAAA	-24	NA	34131995	34111036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052917.16_55895827_55959609_1	chr16	+	993	7	ISM	ENSMUSG00000052917.16	ENSMUST00000202000.2	3218	8	-16	2651	0	203	5prime_fragment	FALSE	canonical	3	17	junction_6	8.60232526704263	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTATGTATTTCTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	55895826	55959609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347
ENSMUSG00000052926.17_85684296_85692642_1	chr8	-	989	8	FSM	ENSMUSG00000052926.17	ENSMUST00000109738.10	2044	8	-2	1057	-2	0	multi-exon	FALSE	canonical	3	1021	junction_5	82.5459674041917	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8281	False	NA	-8	True	AATAAA	-14	NA	85692642	85684295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUSG00000052926.17_85684296_85696062_1	chr8	-	1617	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	307	1057	7	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4861	False	NA	-8	True	AATAAA	-14	NA	85696062	85684295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ENSMUSG00000052926.17_85684296_85696210_1	chr8	-	1765	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	159	1057	0	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4713	False	NA	-8	True	AATAAA	-14	NA	85696210	85684295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ENSMUSG00000052962.4_71792092_71800747_1	chr6	-	1563	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	47	2111	0	1055	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTCTACTTTACTTT	NA	False	NA	-1	True	AATAAA	-16	NA	71800747	71792091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052962.4_71792704_71800747_1	chr6	-	951	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	47	2723	0	443	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCTCCTCACTGTCTCC	NA	False	NA	-10	True	AATAAA	-15	NA	71800747	71792703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052962.4_71792919_71800747_1	chr6	-	736	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	47	2938	0	228	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTTATTGTGCATTA	NA	False	NA	-25	True	ATTAAA	-30	NA	71800747	71792918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052997.16_33840113_33868000_1	chr7	-	2629	18	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	585.006840524286	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_33840892_33841227_33841278_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000053062.17_84571011_84606874_1	chr16	+	1251	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-263	1010	0	-1010	multi-exon	TRUE	canonical	3	4189	junction_2	31.1555238547945	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTGTGTGGTCATATC	NA	False	NA	11	True	ATTAAA	-5	NA	84571010	84606874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_84571011_84619774_1	chr16	+	1325	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1361.98577452189	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	-10	True	ATTAAA	-17	NA	84571010	84619774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
ENSMUSG00000053062.17_84571166_84606874_1	chr16	+	1096	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-108	1010	-108	-1010	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTGTGTGGTCATATC	NA	False	NA	11	True	ATTAAA	-5	NA	84571165	84606874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_84571166_84607884_1	chr16	+	2106	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-108	0	-108	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571165	84607884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_84571166_84619774_1	chr16	+	1170	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1361.98577452189	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	-10	True	ATTAAA	-17	NA	84571165	84619774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
ENSMUSG00000053119.12_71520876_71557153_1	chr6	+	1149	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	95	1410	0	350	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCATTGTAAATGTCAC	NA	False	NA	9	True	AATAAA	-18	NA	71520875	71557153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053253.17_105496253_105546305_1	chr14	+	1860	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	245	427	0	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496252	105546305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUSG00000053286.12_151304399_151333912_1	chr1	+	2471	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304398	151333912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000053286.12_151304399_151333912_2	chr1	+	2643	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	106	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304398	151333912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000053289.9_53009935_53068566_1	chr9	-	918	4	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	90787	0	90787	0	3prime_fragment	FALSE	canonical	3	364	junction_1	10.2306728354819	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53068566	53009934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470
ENSMUSG00000053291.16_26867852_26878301_1	chr7	-	1088	7	NIC	ENSMUSG00000053291.16	novel	1372	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	262.193312907353	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878301	26867851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26878151
ENSMUSG00000053332.14_160862737_160866109_1	chr1	+	894	10	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_2	chr1	+	419	9	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2269.71826445486	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_4	chr1	+	280	6	NNC	ENSMUSG00000053332.14	novel	346	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2208.92040599022	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160865795_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_5	chr1	+	446	10	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1774.59954794189	3762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053367.16_6263339_6284860_1	chr7	+	924	9	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-196	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	26.4952825989835	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	3016	False	NA	8	True	AATAAA	-23	NA	6263338	6284860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269856_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_6263339_6284860_2	chr7	+	856	7	NNC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-196	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	28.9290319383295	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	3016	False	NA	8	True	AATAAA	-23	NA	6263338	6284860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_6263544_6266905_6266949_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053453.10_8508486_8520621_1	chr14	+	807	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	130	0	8	multi-exon	TRUE	canonical	3	370	junction_1	118.776758531907	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGTCGTTCATATTT	NA	False	NA	NA	False	NA	NA	NA	8508485	8520621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_1	chr14	+	843	8	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_2	184.198207352397	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_2	chr14	+	1022	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	287.160125191504	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_8508579_8512131_8512284_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_3	chr14	+	1042	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508784_8520749_1	chr14	+	954	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	181	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508783	8520749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053470.14_71566021_71586123_1	chr6	-	3186	17	NIC	ENSMUSG00000053470.14	novel	4753	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71586123	71566020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
ENSMUSG00000053510.13_108857852_108918358_1	chr4	+	3695	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	0	616	0	0	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	9940	False	NA	39	True	AATAAA	-31	NA	108857851	108918358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ENSMUSG00000053559.14_100519243_100534647_1	chr15	-	833	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	174	-87	-75	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100534647	100519242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
ENSMUSG00000053565.11_28670798_28681230_1	chr7	-	889	8	NIC	ENSMUSG00000053565.11	novel	774	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_6	1203.94528318274	1497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681230	28670797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
ENSMUSG00000053600.9_33184788_33197744_1	chr17	+	1913	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	463	0	-463	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACGAAGCCTGTGCTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	33184787	33197744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUSG00000053600.9_33184788_33197969_1	chr17	+	2138	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	238	0	-238	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTAAGTTCTGAGTATT	NA	False	NA	4	True	AATAAA	-13	NA	33184787	33197969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUSG00000053644.14_56659816_56695381_1	chr18	-	2038	19	NNC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.571330809255	593	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr18_-_56660080_56661109_56661234_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUSG00000053644.14_56659816_56706023_1	chr18	-	2109	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	0	2022	0	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	2854	False	NA	-5	True	ATTAAA	-30	NA	56706023	56659815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
ENSMUSG00000053654.8_100153713_100162509_1	chr11	-	1255	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1812	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	29.6858552175948	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100162509	100153712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100162468
ENSMUSG00000053768.14_32769577_33037180_1	chr6	-	1110	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	15	425	-8	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTTGTACTCTCTTTC	NA	False	NA	-10	True	AATAAA	-21	NA	33037180	32769576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUSG00000053774.10_32151075_32204248_1	chr16	+	1996	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	8317	0	-2465	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGGAAAAGCATACTTTA	8252	False	NA	NA	False	AATAAA	-20	NA	32151074	32204248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053838.15_6055986_6150162_1	chr11	-	3379	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	253	295	253	0	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGTTCTGTCTGTGA	9711	False	NA	-6	True	AATAAA	-14	NA	6150162	6055985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
ENSMUSG00000053841.16_129521931_129534858_1	chr4	-	2509	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	2060	0	-2055	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACAGGGATACTCTAGCA	7860	False	NA	-16	True	ATTAAA	-15	NA	129534858	129521930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
ENSMUSG00000053907.11_72410667_72416539_1	chr6	-	1917	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	2	885	0	216	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAGTTACGATTAAACCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72410666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000053931.12_121220146_121251599_1	chr3	+	1792	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	257	0	1	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTACATGTGTACT	NA	False	NA	NA	False	AATAAA	-18	NA	121220145	121251599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000054021.7_43519140_43548679_1	chr13	+	1436	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43519139	43548679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUSG00000054046.8_43362562_43376184_1	chr7	+	1021	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-261	-774	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACTGTGCCTCTCTCAC	NA	False	NA	14	True	AATAAA	-27	NA	43362561	43376184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054079.13_93750779_93776592_1	chr11	-	1903	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	710	0	-710	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGTGTACATGATTTT	NA	False	NA	-13	True	AATAAA	-14	NA	93776592	93750778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUSG00000054091.10_122718078_122719283_1	chr3	+	384	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	226	550	226	-550	multi-exon	FALSE	canonical	3	1657	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTTTTCATGGTTGAAG	NA	False	NA	5	True	ACTAAA	-21	NA	122718077	122719283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_122718306_122719127
ENSMUSG00000054091.10_122718078_122719385_1	chr3	+	486	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	226	448	226	-448	multi-exon	FALSE	canonical	3	1657	junction_1	0	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTATCTTT	NA	False	NA	107	True	AATAAA	-8	NA	122718077	122719385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_122718306_122719127
ENSMUSG00000054199.18_88742538_88761947_1	chr3	+	821	4	NIC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	0	8225	combination_of_known_junctions	FALSE	canonical	3	78	junction_3	45.1540572804802	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAAGGGTACTAAGAGG	NA	False	NA	NA	False	GATAAA	-11	NA	88742537	88761947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_88742597_88744296_88744828_88753694_88753887_88761908
ENSMUSG00000054226.14_85892737_85906024_1	chr6	+	855	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	8	1240	0	17	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUSG00000054237.7_38176929_38212435_1	chr19	-	1251	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	151	0	151	0	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212435	38176928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054237.7_38192991_38212586_1	chr19	-	955	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	16062	0	0	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212586	38192990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054302.16_54720251_54742647_1	chr12	-	1041	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	19	3126	0	0	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGTGGTTATCAAC	NA	False	NA	-5	True	ATTAAA	-19	NA	54742647	54720250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ENSMUSG00000054309.10_21336359_21364836_1	chr12	+	2278	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	221	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	13	True	AATAAA	-17	NA	21336358	21364836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
ENSMUSG00000054379.8_103105425_103126860_1	chr3	-	728	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20569	117	intron_retention	TRUE	canonical	0	0	junction_1	7.07106781186548	136	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTTGCAATTTTATT	NA	False	NA	-23	True	NA	NA	NA	103126860	103105424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_103105630_103105704_103105942_103106094_103106313_103126792
ENSMUSG00000054379.8_103105542_103126860_1	chr3	-	608	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20569	0	intron_retention	TRUE	canonical	0	0	junction_1	7.5	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126860	103105541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_103105864_103106094_103106313_103126792
ENSMUSG00000054400.17_104977562_104984579_1	chr8	+	829	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	48	427	0	-427	multi-exon	FALSE	canonical	3	282	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAGAAAGATCCTTTT	4861	False	NA	NA	False	NA	NA	NA	104977561	104984579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_104977728_104983916
ENSMUSG00000054414.5_115739592_115801055_1	chr3	-	2050	11	FSM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	0	6970	0	-6970	multi-exon	FALSE	canonical	3	92	junction_7	12.5940462123973	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTAGCCTATTTT	108	False	NA	64	True	TATAAA	-21	NA	115801055	115739591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
ENSMUSG00000054426.12_115675230_115681746_1	chr3	-	785	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	941	False	NA	-5	True	NA	NA	NA	115681746	115675229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_115675488_115679862_115680068_115681424
ENSMUSG00000054604.8_64672359_64676503_1	chr16	+	1058	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	3367	0	154	multi-exon	FALSE	canonical	3	981	junction_2	152	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGTTCATTTTTATA	NA	False	NA	21	True	ATTAAA	-14	NA	64672358	64676503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_64672600_64673161_64673389_64675913
ENSMUSG00000054612.5_136496343_136729914_1	chr7	+	970	6	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	0	-2081	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	98.1150345258055	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496342	136729914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_136496417_136521584_136521742_136552996_136553134_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054612.5_136496343_136729914_2	chr7	+	813	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	0	2081	0	-2081	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496342	136729914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054626.12_52785715_52799673_1	chrX	-	1024	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	325	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799673	52785714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
ENSMUSG00000054626.12_52785920_52799673_1	chrX	-	789	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	-10	205	0	-205	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	52799673	52785919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUSG00000054626.12_52785920_52799673_2	chrX	-	837	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	-10	205	0	-205	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	52799673	52785919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUSG00000054717.8_57964941_57967429_1	chr8	+	1024	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	1604	0	1186	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	2870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATAGGAATTTGTATTA	NA	False	NA	-18	True	NA	NA	NA	57964940	57967429	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054717.8_57964941_57967523_1	chr8	+	1118	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	1510	0	1280	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	3369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	4	True	AATAAA	-15	NA	57964940	57967523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054717.8_57965008_57967429_1	chr8	+	957	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	67	1604	0	1186	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATAGGAATTTGTATTA	NA	False	NA	-18	True	NA	NA	NA	57965007	57967429	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054727.3_52744868_52759810_1	chrX	-	889	8	NIC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	152	junction_7	416.319245634542	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759810	52744867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52759728
ENSMUSG00000054733.10_64360075_64678366_1	chr14	-	1337	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14986	1	0	0	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACCGCCTGCTGTGAGT	NA	False	NA	-5	True	AATAAA	-19	NA	64678366	64360074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
ENSMUSG00000054753.10_3204498_3218931_1	chr7	-	3351	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	98	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9604	False	NA	87	True	NA	NA	NA	3218931	3204497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ENSMUSG00000054766.14_29952111_29961441_1	chr2	+	1430	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	1148	246	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	4551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29952110	29961441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054766.14_29952111_29961807_1	chr2	+	1796	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	782	246	366	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	5545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	16	True	AATAAA	-18	NA	29952110	29961807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054766.14_29952111_29962589_1	chr2	+	2578	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	0	246	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	6738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29952110	29962589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054814.15_74161369_74226409_1	chr5	-	2495	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	0	1091	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTGGTTTTCCTACA	NA	False	NA	-19	True	ATTAAA	-29	NA	74226409	74161368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
ENSMUSG00000054836.13_110134272_110151170_1	chr9	+	2052	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	31	-779	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTGTGTGTGTGTTCCT	2213	False	NA	6	True	AATAAA	-14	NA	110134271	110151170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUSG00000054894.7_69771742_69790609_1	chr12	+	1196	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	-823	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTCTGGTGTCACTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	69771741	69790609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054942.14_152025582_152046021_1	chr3	-	1693	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-1	38368	0	11450	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTTAACTGTGGGCTTC	NA	False	NA	3	True	NA	NA	NA	152046021	152025581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ENSMUSG00000055041.9_76784136_76785505_1	chr15	+	1034	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	0	-114	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784135	76785505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76784216_76784551
ENSMUSG00000055044.13_40210683_40259958_1	chr19	-	1403	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	102	1066	102	124	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	-18	True	AATAAA	-18	NA	40259958	40210682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055044.13_40210683_40260060_1	chr19	-	1505	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	1066	0	124	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	-18	True	AATAAA	-18	NA	40260060	40210682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055102.16_43256593_43267640_1	chr7	+	2392	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2836	False	NA	7	True	AATAAA	-15	NA	43256592	43267640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055116.9_112894704_112913333_1	chr7	+	1665	9	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	60874	-286	-9923	0	3prime_fragment	FALSE	canonical	3	70	junction_1	14.6287388383278	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	NA	False	NA	NA	False	AATAAA	-20	NA	112894703	112913333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ENSMUSG00000055128.16_47069701_47091650_1	chr14	+	1205	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	119	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	656	False	NA	14	True	AATAAA	-24	NA	47069700	47091650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUSG00000055239.11_72819552_72825302_1	chr6	-	657	2	ISM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	50973	0	1094	0	3prime_fragment	FALSE	canonical	3	1196	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTGTGTATTTAT	NA	False	NA	-84	True	NA	NA	NA	72825302	72819551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_72820114_72825207
ENSMUSG00000055239.11_72819552_72876686_1	chr6	-	1520	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	276	1455	0	0	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTGTGTATTTAT	8741	False	NA	-84	True	NA	NA	NA	72876686	72819551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
ENSMUSG00000055302.6_36952606_36954116_1	chr5	-	1253	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	395	0	-395	multi-exon	FALSE	canonical	3	1678	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTAACCTGCCTGGT	NA	False	NA	NA	False	TTTAAA	-18	NA	36954116	36952605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_36953289_36953546
ENSMUSG00000055371.18_52583373_52632192_1	chr2	-	3000	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	20	1697	0	-1697	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAAATCTTATCGTTTA	NA	False	NA	-5	True	ATTAAA	-18	NA	52632192	52583372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ENSMUSG00000055371.18_52584588_52632192_1	chr2	-	1785	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	20	2912	0	-2912	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTGAAGGCCATAAAAGGT	NA	False	NA	NA	False	AATAAA	-23	NA	52632192	52584587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ENSMUSG00000055401.15_148230173_148236448_1	chr4	-	1279	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-66	-402	-66	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236448	148230172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_148230245_148236188_1	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	182	1	-85	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236188	148230244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
ENSMUSG00000055401.15_148230245_148236386_1	chr4	-	1145	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-4	-330	-4	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236386	148230244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_148230245_148236516_1	chr4	-	1275	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-134	-330	0	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_148230245_148236597_1	chr4	-	1091	6	NNC	ENSMUSG00000055401.15	novel	1163	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236597	148230244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
ENSMUSG00000055436.19_157716556_157742233_1	chr3	-	2617	13	FSM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	43	446	0	0	multi-exon	FALSE	canonical	3	316	junction_12	95.9239788698437	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157742233	157716555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ENSMUSG00000055531.13_117184757_117212875_2	chr10	-	2347	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	4179	0	187	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCCCTTGATTTTGATA	4474	False	NA	0	True	ATTAAA	-19	NA	117212875	117184756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUSG00000055531.13_117184944_117212875_1	chr10	-	2160	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	4366	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4474	False	NA	-9	True	AATAAA	-16	NA	117212875	117184943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUSG00000055553.17_70966046_70980318_1	chr8	-	1122	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	115	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_4	284.550852221532	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70980318	70966045	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ENSMUSG00000055555.2_52726793_52740532_1	chrX	+	1551	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	0	-124	0	124	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGTTTTCCATGATCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	52726792	52740532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
ENSMUSG00000055560.9_67555758_67569519_1	chr13	-	1386	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	18	1930	-1	825	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCTATTAAGTGTT	NA	False	NA	-105	True	NA	NA	NA	67569519	67555757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
ENSMUSG00000055653.14_51361429_51702827_1	chrX	-	2119	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-29	126	0	-126	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAAGTTGTGCCAAATT	NA	False	NA	NA	False	AAGAAA	-8	NA	51702827	51361428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
ENSMUSG00000055681.15_70755419_70765640_1	chr8	+	1127	9	ISM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	251	0	0	0	intron_retention	FALSE	canonical	3	1246	junction_3	46.5025200930014	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	703	False	NA	26	True	AATAAA	-15	NA	70755418	70765640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355
ENSMUSG00000055681.15_70755419_70765640_2	chr8	+	1049	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	251	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	703	False	NA	26	True	AATAAA	-15	NA	70755418	70765640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055681.15_70755555_70765640_1	chr8	+	913	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	387	0	109	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	10	False	NA	26	True	AATAAA	-15	NA	70755554	70765640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055692.22_17094173_17096525_1	chr16	+	1399	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	232	0	0	0	multi-exon	TRUE	canonical	3	122	junction_4	58.6725586266908	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_2	chr16	+	1553	9	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_3	51.3997811279387	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_3	chr16	+	1381	10	NNC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_8	80.0083328993508	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095588_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_4	chr16	+	1706	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	186	junction_5	33.1331488928468	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_17094333_17094497_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_5	chr16	+	1736	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	181	junction_2	34.7754702819866	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095756_17095835
ENSMUSG00000055720.11_57818269_57837251_1	chr9	+	1428	12	NNC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	96.9895623591094	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_57818291_57818992_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_57818269_57837251_2	chr9	+	1473	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_57818269_57837251_3	chr9	+	1421	12	NIC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	95.5400482857649	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_57818291_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_57818334_57837251_1	chr9	+	1520	12	NIC	ENSMUSG00000055720.11	novel	1426	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	95.7810002035894	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818333	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_57818455_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055762.17_75767337_75781155_1	chr15	-	980	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	49	1283	0	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	3626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055762.17_75767337_75781155_2	chr15	-	1037	9	NIC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_5	1349.65903101487	3310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055850.13_72336697_72339376_1	chr6	-	1387	5	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	389.700205286063	1451	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_72337618_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055850.13_72336697_72339376_2	chr6	-	1360	5	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_4	391.378652969219	1407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339258
ENSMUSG00000055850.13_72336697_72339376_3	chr6	-	1627	4	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	875	junction_1	75.1546553596131	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055884.9_65122381_65134204_1	chr12	+	870	4	NNC	ENSMUSG00000055884.9	novel	4050	11	NA	NA	0	-6654	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	59.9462722406953	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTAAAAAGCAAAAGGA	9284	False	NA	NA	False	NA	NA	NA	65122380	65134204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134156
ENSMUSG00000055917.16_40365558_40495781_1	chr12	-	1555	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	120	513	-8	-513	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTGGACTGAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	40495781	40365557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
ENSMUSG00000055917.16_40372342_40495781_1	chr12	-	1082	8	ISM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	120	7297	-8	2132	5prime_fragment	FALSE	canonical	3	359	junction_2	44.603010788831	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAAAGATACTTTTGGG	NA	False	NA	NA	False	AATAAA	-20	NA	40495781	40372341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr12_-_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
ENSMUSG00000055943.6_112285342_112297780_1	chr2	+	933	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	200.477398975545	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_112285485_112289809_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_2	chr2	+	1099	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	0	4727	0	-4727	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_3	chr2	+	938	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_4	chr2	+	1127	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	216.128867808074	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_112285646_112289804_112289925_112293117_112293285_112295081_112295163_112297325
ENSMUSG00000056050.16_183108002_183126957_1	chr1	-	2757	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	0	-320	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTCTTAAGCTAGAATA	NA	False	NA	-71	True	AGTAAA	-14	NA	183126957	183108001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ENSMUSG00000056131.14_86437054_86453855_1	chr9	-	2017	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	25	624	-9	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453855	86437053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000056167.9_114415169_114469142_1	chr9	-	2630	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	223	0	-135	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGGTTTGTG	NA	False	NA	-12	True	TATAAA	-18	NA	114469142	114415168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_114415169_114469142_2	chr9	-	2594	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-135	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGGTTTGTG	NA	False	NA	-12	True	TATAAA	-18	NA	114469142	114415168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_114415169_114469252_1	chr9	-	2704	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-135	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGGTTTGTG	NA	False	NA	-12	True	TATAAA	-18	NA	114469252	114415168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_114415169_114469252_2	chr9	-	2740	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	-110	223	0	-135	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGGTTTGTG	NA	False	NA	-12	True	TATAAA	-18	NA	114469252	114415168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056201.9_5540544_5544059_1	chr19	+	1123	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	61	1170	0	2	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	6398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	14	True	NA	NA	NA	5540543	5544059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ENSMUSG00000056204.9_71102532_71112388_1	chr8	-	1436	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	0	3447	0	296	multi-exon	TRUE	canonical	3	150	junction_1	24.3554408705735	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGAGGGTATTTGTTGT	NA	False	NA	-13	True	NA	NA	NA	71112388	71102531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
ENSMUSG00000056209.8_45736173_45738003_1	chr19	-	1157	5	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	27	0	-15	0	intron_retention	FALSE	canonical	3	216	junction_3	14.3614066163451	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4914	False	NA	0	True	AATAAA	-27	NA	45738003	45736172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495
ENSMUSG00000056209.8_45736276_45738003_1	chr19	-	758	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	27	103	-15	-103	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAAACAAAAGAACAT	4914	False	NA	-103	True	NA	NA	NA	45738003	45736275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000056234.16_31881895_31901207_1	chr14	+	3387	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	73	605	0	3	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGTGTTTGTGTTATC	NA	False	NA	1	True	ATTAAA	-16	NA	31881894	31901207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUSG00000056267.15_99125495_99146983_1	chr9	+	1833	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	75	-1168	0	2	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	9	True	NA	NA	NA	99125494	99146983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_99125495_99182457_1	chr9	+	2650	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUSG00000056300.15_146586484_146627265_1	chr4	+	824	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	0	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.482428469283	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586483	146627265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146586602_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146599377_146627265_1	chr4	+	829	4	NNC	ENSMUSG00000056300.15	novel	578	4	NA	NA	0	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	181.726901329073	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146627265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146599500_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056310.15_130284460_130369998_1	chr5	+	2506	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	0	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3512	False	NA	20	True	AATAAA	-23	NA	130284459	130369998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056310.15_130285876_130369998_1	chr5	+	2638	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	406	0	-406	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4928	False	NA	20	True	AATAAA	-23	NA	130285875	130369998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056367.15_25964995_26055686_1	chr5	+	2087	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	-29	-346	0	0	multi-exon	TRUE	canonical	3	90	junction_4	20.0016528242663	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964994	26055686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ENSMUSG00000056429.5_72588486_72593730_1	chr6	-	1689	4	FSM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	253	3071	253	-3071	multi-exon	FALSE	canonical	3	270	junction_1	25.9786236911983	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCATTGAACAAGTGTGT	4672	False	NA	14	True	AGTAAA	-31	NA	72593730	72588485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72589094_72591054_72591139_72592506_72593433_72593659
ENSMUSG00000056436.5_76184286_76190794_1	chr2	-	626	3	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	94.5	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_76184581_76186423_76186617_76190656
ENSMUSG00000056458.17_110774232_110805526_1	chr12	-	1644	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9507	False	NA	-3	True	AATATA	-18	NA	110805526	110774231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ENSMUSG00000056458.17_110774232_110807361_1	chr12	-	1231	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	-3	True	AATATA	-18	NA	110807361	110774231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ENSMUSG00000056612.8_6952609_6954619_1	chr19	+	653	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	273	73	0	1	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTTTATATTGACTCT	1853	False	NA	NA	False	ATTAAA	-15	NA	6952608	6954619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
ENSMUSG00000056666.14_72575611_72584471_1	chr6	+	1937	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	153	937	0	46	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	17	True	TATAAA	-22	NA	72575610	72584471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
ENSMUSG00000056737.15_72526434_72539966_1	chr6	+	1222	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	178	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526433	72539966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056820.8_125739788_125760733_1	chr8	+	2141	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	52	198	0	-198	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGTTGTCCTGGTGGTG	5246	False	NA	NA	False	AATAAA	-24	NA	125739787	125760733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUSG00000056851.15_102379220_102407324_1	chr15	+	1545	15	FSM	ENSMUSG00000056851.15	ENSMUST00000077037.13	2952	15	235	1172	0	8	multi-exon	FALSE	canonical	3	59	junction_1	143.98145076108	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	2255	False	NA	13	True	ATTAAA	-13	NA	102379219	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102379220_102407324_2	chr15	+	1464	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229802.2	1215	14	20	-269	0	8	multi-exon	FALSE	non_canonical	0	0	junction_7	168.031977796282	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	2255	False	NA	13	True	ATTAAA	-13	NA	102379219	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102382580_102407324_1	chr15	+	1379	13	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	0	8	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_5	163.569047601719	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	5615	False	NA	13	True	ATTAAA	-13	NA	102382579	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_1	chr15	+	1295	11	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	0	8	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	170.04281813708	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_4	chr15	+	1286	11	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	1879	1172	0	8	3prime_fragment	FALSE	canonical	3	231	junction_3	121.524318553942	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_5	chr15	+	1205	10	ISM	ENSMUSG00000056851.15	ENSMUST00000229918.2	1463	15	3377	-248	0	8	3prime_fragment	FALSE	non_canonical	0	0	junction_3	165.493873669759	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_6	chr15	+	1193	10	ISM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	3963	-8	0	8	3prime_fragment	FALSE	canonical	3	231	junction_3	119.145102944081	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102399121_102407324_1	chr15	+	519	2	ISM	ENSMUSG00000056851.15	ENSMUST00000230631.2	585	3	1165	-273	1165	8	3prime_fragment	FALSE	canonical	3	634	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	5020	False	NA	13	True	ATTAAA	-13	NA	102399120	102407324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_102399239_102406923
ENSMUSG00000056938.17_102993902_103003023_1	chr11	+	1714	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	19	junction_1	40.6569508733868	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993901	103003023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_102993934_103003026_1	chr11	+	1734	10	NIC	ENSMUSG00000056938.17	novel	807	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	42	junction_1	35.1346615814703	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993933	103003026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_102993934_103003026_2	chr11	+	1599	9	NIC	ENSMUSG00000056938.17	novel	807	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	44	junction_1	32.3138902022025	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993933	103003026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056941.18_153460754_153474671_1	chr2	-	1279	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	30	1901	-11	0	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474671	153460753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ENSMUSG00000056999.17_37247983_37255163_1	chr19	-	481	5	ISM	ENSMUSG00000056999.17	ENSMUST00000154339.8	2001	15	29628	154	13114	-154	3prime_fragment	FALSE	canonical	3	876	junction_3	22.4874965258474	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	8923	False	NA	-20	True	AATAAA	-13	NA	37255163	37247982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139
ENSMUSG00000056999.17_37247983_37340052_1	chr19	-	3260	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-42	1841	-42	-154	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	NA	False	NA	-20	True	AATAAA	-13	NA	37340052	37247982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
ENSMUSG00000057113.14_33102511_33113077_1	chr11	-	1280	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	129	224	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	45913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057130.13_80250061_80265746_1	chr18	+	748	4	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	combination_of_known_junctions	FALSE	canonical	3	109	junction_1	1089.22796308007	1568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_80250162_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_2	chr18	+	703	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	51	3324	-17	193	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	1582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_3	chr18	+	772	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_4	chr18	+	863	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	-17	-329	-17	193	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057133.15_160871759_160950995_1	chr2	-	1145	7	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	0	21805	0	0	5prime_fragment	FALSE	canonical	3	60	junction_4	13.7931142241337	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGGGTCTTCTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	160950995	160871758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057181.16_80254469_80268845_1	chr11	-	1395	10	NNC	ENSMUSG00000057181.16	novel	4554	10	NA	NA	-4	336	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	30.825674724525	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTCTTCACCAGGTCC	NA	False	NA	-17	True	ATTAAA	-14	NA	80268845	80254468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264518_80264887_80265044_80266332_80266459_80267628_80267710_80268667
ENSMUSG00000057215.7_106842229_106895201_1	chr7	+	973	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	0	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	12	True	AATAAA	-19	NA	106842228	106895201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
ENSMUSG00000057236.11_129203177_129229102_1	chr4	-	2062	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	61	2284	-60	133	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAGATAAAAGAGAGCTT	2553	False	NA	NA	False	AATAAA	-17	NA	129229102	129203176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_1	chr4	-	1645	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.162062349697	139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_129203670_129211443_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_2	chr4	-	1929	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	61	2417	-60	0	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_3	chr4	-	814	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_4	chr4	-	1755	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_129203670_129203843_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_5	chr4	-	1013	6	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.118402303366	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_129203679_129216177_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_6	chr4	-	1324	8	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	365.178904994608	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_-_129203670_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203450_129229102_1	chr4	-	1789	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	61	2557	-60	-140	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTTTTAGGGGTTAG	2553	False	NA	-14	True	ATTAAA	-17	NA	129229102	129203449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057278.9_86348524_86355889_1	chr6	+	396	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	238	421	0	0	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	3178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
ENSMUSG00000057342.16_45359691_45367355_1	chr7	-	2677	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	71	800	-29	0	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	3233	False	NA	-6	True	AATAAA	-35	NA	45367355	45359690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
ENSMUSG00000057388.10_13130236_13134990_1	chr17	-	977	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	242	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13134990	13130235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000057388.10_13130236_13135089_1	chr17	-	1076	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	143	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135089	13130235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000057388.10_13130367_13134990_1	chr17	-	846	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	242	131	0	-131	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTGTGTGCTTGTGTG	NA	False	NA	0	True	TTTAAA	-16	NA	13134990	13130366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000057409.8_21709260_21727815_1	chr17	+	792	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	0	-2211	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1475	False	NA	NA	False	AATAAA	-16	NA	21709259	21727815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
ENSMUSG00000057409.8_21709260_21730059_1	chr17	+	2389	5	FSM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	0	676	0	33	multi-exon	FALSE	canonical	3	42	junction_4	50.8527285403645	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTAATTATAACTGTGG	1475	False	NA	NA	False	AATAAA	-20	NA	21709259	21730059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21728248
ENSMUSG00000057411.10_26009480_26011369_1	chr17	-	913	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	403	5	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8370	False	NA	-7	True	AATAAA	-17	NA	26011369	26009479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
ENSMUSG00000057411.10_26009480_26011369_2	chr17	-	1374	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	506	6	0	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8370	False	NA	-7	True	AATAAA	-17	NA	26011369	26009479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319
ENSMUSG00000057411.10_26009480_26011772_1	chr17	-	641	5	NNC	ENSMUSG00000057411.10	novel	1321	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	9977	False	NA	-7	True	AATAAA	-17	NA	26011772	26009479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
ENSMUSG00000057497.9_86342628_86344007_1	chr6	+	590	2	ISM	ENSMUSG00000057497.9	ENSMUST00000204893.2	448	3	-78	1773	0	6	5prime_fragment	FALSE	canonical	3	1864	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCTTAAAATGTATATTAA	8617	False	NA	8	True	TATAAA	-2	NA	86342627	86344007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_86342802_86343591
ENSMUSG00000057497.9_86342706_86345918_1	chr6	+	443	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	78	1122	0	138	multi-exon	FALSE	canonical	3	1740	junction_2	62	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGGGACTGCGGGCAGGC	8695	False	NA	16	True	AATAAA	-17	NA	86342705	86345918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUSG00000057497.9_86342706_86347040_1	chr6	+	1537	4	NNC	ENSMUSG00000057497.9	novel	1643	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	528	junction_3	602.699114170763	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8695	False	NA	32	True	AATAAA	-16	NA	86342705	86347040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_86342802_86343591_86343733_86345712_86346151_86346178
ENSMUSG00000057522.16_95304924_95383840_1	chr11	+	2471	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	18	392	0	-392	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	5	True	TATAAA	-17	NA	95304923	95383840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057522.16_95304924_95383840_2	chr11	+	2671	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	392	0	-392	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	5	True	TATAAA	-17	NA	95304923	95383840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057554.14_12455726_12476387_1	chr13	-	1132	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	232	1428	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCATGACTGCCAAAACC	NA	False	NA	-65	True	NA	NA	NA	12476387	12455725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUSG00000057561.11_46730768_46742316_1	chr18	+	1906	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	-3	962	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUSG00000057561.11_46730822_46742245_1	chr18	+	1781	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	51	1033	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUSG00000057572.16_129229488_129240826_1	chr4	+	995	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	0	2838	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229487	129240826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057572.16_129229805_129240879_1	chr4	+	731	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	317	2785	0	53	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTACTTGGTCATTTG	NA	False	NA	70	True	AATGAA	-22	NA	129229804	129240879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057594.13_120355692_120358297_1	chr11	-	1354	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	129	-572	-6	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGGCCTGGAGAGA	NA	False	NA	NA	False	CATAAA	-26	NA	120358297	120355691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057594.13_120356264_120358297_1	chr11	-	782	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	129	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358297	120356263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057649.7_74085957_74109008_1	chr13	+	2461	16	NIC	ENSMUSG00000057649.7	novel	2407	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_6	34.8873743478768	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATCACCCCGTCCGCT	NA	False	NA	23	True	AATAAA	-20	NA	74085956	74109008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUSG00000057666.19_125138817_125141879_1	chr6	-	1221	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125141879	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
ENSMUSG00000057666.19_125138817_125142568_1	chr6	-	1319	7	NNC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	4043.00748893142	42528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142447
ENSMUSG00000057666.19_125138817_125142568_2	chr6	-	1368	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	3249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_3	chr6	-	1470	5	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1441.13000367767	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_4	chr6	-	1252	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	168	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	47042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_5	chr6	-	1426	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	204	junction_5	3916.70276933715	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142059_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_6	chr6	-	1336	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1950.20942465162	44160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_7	chr6	-	1386	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1692.66445582106	2238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057788.14_70746101_70755121_1	chr8	-	1534	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	18	585	-8	135	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGACTTGAGAATGGGGT	9949	False	NA	-5	True	AGTAAA	-19	NA	70755121	70746100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
ENSMUSG00000057789.15_27238784_27247552_1	chr17	-	1956	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	431	0	0	0	multi-exon	TRUE	canonical	3	126	junction_3	5.45527267879434	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247552	27238783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057789.15_27238784_27247668_1	chr17	-	2072	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	315	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247668	27238783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057836.13_72117949_72140623_1	chrX	-	1584	10	Fusion	ENSMUSG00000057836.13_ENSMUSG00000079845.9	novel	1584	9	NA	NA	0	2	multi-exon	TRUE	non_canonical	0	0	junction_1	589.847019296393	2045	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72140623	72117948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chrX_-_72118054_72130003_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ENSMUSG00000057858.9_60187331_60215101_1	chr19	-	1616	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9801	False	NA	NA	False	AGTAAA	-14	NA	60215101	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215133_1	chr19	-	1726	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	-4	313	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUSG00000057858.9_60187331_60215133_2	chr19	-	1560	7	NIC	ENSMUSG00000057858.9	novel	725	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215133_3	chr19	-	1648	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215133_4	chr19	-	1683	9	NIC	ENSMUSG00000057858.9	novel	725	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
ENSMUSG00000057858.9_60187331_60215133_5	chr19	-	1314	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	-15	-348	0	0	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
ENSMUSG00000057863.7_56920416_56921246_1	chr17	+	523	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	intron_retention	FALSE	canonical	3	9970	junction_2	629.5	7200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_56920681_56920906_56921042_56921123
ENSMUSG00000057863.7_56920416_56921246_2	chr17	+	694	2	ISM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	-3	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	0	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_56920449_56920585
ENSMUSG00000057863.7_56920416_56921246_3	chr17	+	612	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	2267	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_56920449_56920585_56921042_56921123
ENSMUSG00000057933.11_78238300_78249944_1	chr9	-	976	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3910	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249944	78238299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
ENSMUSG00000057982.9_22137010_22147176_1	chr9	+	980	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	-9	-374	0	-338	multi-exon	FALSE	canonical	3	166	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCTGTGGTCATGGTG	740	False	NA	NA	False	NA	NA	NA	22137009	22147176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_22137129_22146315
ENSMUSG00000057982.9_22137010_22150989_1	chr9	+	1601	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	-38	-250	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	740	False	NA	34	True	NA	NA	NA	22137009	22150989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ENSMUSG00000058056.17_61966266_61986635_1	chr8	-	1427	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57541	1799	240	1693	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACACCAAAATCATATT	NA	False	NA	NA	False	NA	NA	NA	61986635	61966265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
ENSMUSG00000058076.13_170956733_170978172_1	chr1	-	1251	6	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	0	243	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	366.673369635702	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	-6	True	ATTAAA	-16	NA	170978172	170956732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978048
ENSMUSG00000058076.13_170956733_170978172_2	chr1	-	1172	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	1999	0	243	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	-6	True	ATTAAA	-16	NA	170978172	170956732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ENSMUSG00000058076.13_170956838_170978172_1	chr1	-	1067	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	2104	0	138	multi-exon	FALSE	canonical	3	578	junction_5	147.434866975217	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTTTTTCATTTCTA	456	False	NA	-2	True	NA	NA	NA	170978172	170956837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ENSMUSG00000058135.13_107919577_107925134_1	chr3	-	1128	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	155	6	-12	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCATGAGTTGTGTCT	6738	False	NA	-10	True	AATAAA	-12	NA	107925134	107919576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUSG00000058147.2_72298146_72308997_1	chrX	-	2400	8	NIC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	686	junction_4	393.293938993445	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308997	72298145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72298146_72308997_2	chrX	-	1615	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_5	600.2778986066	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308997	72298145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303202_72303233_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72298812_72308997_1	chrX	-	919	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	-1	666	-1	-666	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTGCAAATATGTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	72308997	72298811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058186.14_145311764_145427736_1	chr4	+	708	5	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-9	-1474	multi-exon	FALSE	canonical	0	0	junction_2	187.491833155474	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	145311763	145427736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145311905_145314001_145314095_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_145311764_145434487_1	chr4	+	1292	7	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-9	3476	multi-exon	FALSE	canonical	0	0	junction_2	167.320052593824	124	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311763	145434487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
ENSMUSG00000058186.14_145311764_145434487_2	chr4	+	1282	7	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-9	3476	multi-exon	FALSE	canonical	0	0	junction_6	158.820303767777	141	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311763	145434487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145422720_145422806_145425813_145425941_145433992
ENSMUSG00000058186.14_145311764_145434487_3	chr4	+	1362	8	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-9	3476	multi-exon	FALSE	canonical	0	0	junction_7	152.773274722341	194	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311763	145434487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
ENSMUSG00000058186.14_145428442_145431011_1	chr4	+	1904	3	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	5711	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145428441	145431011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_145428609_145428860_145429390_145429803
ENSMUSG00000058216.14_4107477_4109088_1	chr19	-	896	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	207	-1	207	0	3prime_fragment	FALSE	canonical	3	57	junction_3	9.36416040016402	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9431	False	NA	NA	False	NA	NA	NA	4109088	4107476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
ENSMUSG00000058240.15_91486210_91525511_1	chr16	-	1613	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	0	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	9180	False	NA	NA	False	TTTAAA	-18	NA	91525511	91486209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91486414_91525511_1	chr16	-	1409	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	204	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	1396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGCTTTCAGCAAAAG	9180	False	NA	-22	True	TATAAA	-16	NA	91525511	91486413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91486494_91525511_1	chr16	-	1329	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	284	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGGGGACATTCCAAAA	9180	False	NA	-24	True	NA	NA	NA	91525511	91486493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91491346_91525511_1	chr16	-	956	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	78	120	0	-114	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTAGAGTACATTTT	9180	False	NA	2	True	AATAAA	-25	NA	91525511	91491345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91491346_91525511_2	chr16	-	1551	9	ISM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	5136	0	-114	5prime_fragment	FALSE	canonical	3	1431	junction_2	88.070195724774	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTAGAGTACATTTT	9180	False	NA	2	True	AATAAA	-25	NA	91525511	91491345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91503907_91525511_1	chr16	-	609	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	-23	176	0	-176	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGTGTGTACTCG	9180	False	NA	NA	False	TATAAA	-19	NA	91525511	91503906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058258.15_8935979_8942487_1	chr13	+	2585	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	442	0	0	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935978	8942487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUSG00000058267.14_160022785_160027390_1	chr1	+	649	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	2350	0	0	multi-exon	FALSE	canonical	3	2655	junction_1	51	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTTCCTTCAAGT	NA	False	NA	17	True	AATAAA	-17	NA	160022784	160027390	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160022882_160024515_160024675_160026997
ENSMUSG00000058267.14_160022785_160027639_1	chr1	+	898	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	2101	0	249	multi-exon	FALSE	canonical	3	2655	junction_1	51	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTCATCTTTTAAATT	NA	False	NA	7	True	AATAAA	-15	NA	160022784	160027639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160022882_160024515_160024675_160026997
ENSMUSG00000058328.14_72151712_72161308_1	chrX	-	1102	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058328.14_72151712_72161308_2	chrX	-	1057	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	0	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	139.651022779159	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
ENSMUSG00000058328.14_72151712_72161308_3	chrX	-	1088	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	0	303	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_7	138.166418436874	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161199
ENSMUSG00000058328.14_72151712_72161308_4	chrX	-	1179	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	471	0	303	multi-exon	FALSE	canonical	3	269	junction_2	77.2438306598009	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_72151712_72161308_5	chrX	-	1156	9	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_8	132.269551957357	205	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
ENSMUSG00000058328.14_72151712_72161308_6	chrX	-	1080	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_72151712_72161308_7	chrX	-	1187	9	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_8	130.918629308437	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161199
ENSMUSG00000058328.14_72151712_72161308_8	chrX	-	1003	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	471	0	303	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058355.9_80410274_80438306_1	chr8	-	3547	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	63	183	-7	-183	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	80438306	80410273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
ENSMUSG00000058392.14_32255377_32279579_1	chr17	+	2311	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	303	2260	0	32	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGCTTTTTAATTACTT	NA	False	NA	15	True	TATAAA	-15	NA	32255376	32279579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058407.13_38026190_38036305_1	chr1	-	1370	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	91	1920	0	285	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGGAACTCCATTGGCT	NA	False	NA	-7	True	ATTAAA	-18	NA	38036305	38026189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_38026477_38036033_1	chr1	-	1027	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	664	-247	272	0	multi-exon	FALSE	canonical	3	37	junction_4	367.038400579558	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036033	38026476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
ENSMUSG00000058407.13_38026477_38036305_1	chr1	-	1083	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	91	2207	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_38026477_38036305_2	chr1	-	1028	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	669	2	0	0	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUSG00000058440.15_30048041_30140903_1	chr6	+	2277	12	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	271	junction_11	90.9985923058862	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	26	True	NA	NA	False	NA	NA	NA	30048040	30140903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_30048041_30140903_2	chr6	+	2313	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	26	True	NA	NA	False	NA	NA	NA	30048040	30140903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_30048041_30144859_1	chr6	+	1904	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	26	True	NA	7	True	AATAAA	-23	NA	30048040	30144859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058454.16_143383984_143402147_1	chr7	+	2334	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	621	0	0	0	3prime_fragment	FALSE	canonical	3	394	junction_5	16.39686381163	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383983	143402147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUSG00000058503.12_3593838_3620238_1	chr5	+	1989	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	0	-498	0	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3593837	3620238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058546.9_78071761_78074045_1	chr11	-	727	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	-142	3	-142	0	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	8076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	6328	False	NA	-14	True	CATAAA	-1	NA	78074045	78071760	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
ENSMUSG00000058550.16_48104098_48114600_1	chr16	+	1467	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_6	192.66443193629	633	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113458_48114061
ENSMUSG00000058550.16_48104150_48114600_1	chr16	+	1322	7	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	197.131653695922	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr16_+_48104205_48108240_48108359_48109401_48109464_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058550.16_48104150_48114600_2	chr16	+	1512	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_3	208.929145298357	596	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058558.13_108048438_108055921_1	chr5	+	1025	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	70	950	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	5106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048740_108055921_1	chr5	+	1148	8	NIC	ENSMUSG00000058558.13	novel	834	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	2625.0489752477	4891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048739	108055921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_108048938_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058579.6_141542273_141546657_1	chr4	-	612	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	-144	0	-144	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	391	False	NA	-2	True	AATAAA	-18	NA	141546657	141542272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_141542367_141545175_141545329_141546292
ENSMUSG00000058587.10_75405398_75466939_1	chr9	-	3258	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	409	0	-409	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCAGACTGTTGGTCATT	NA	False	NA	0	True	AATAAA	-19	NA	75466939	75405397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUSG00000058587.10_75406928_75466939_1	chr9	-	1728	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	1939	0	225	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGCTCAGAATCCATTAT	NA	False	NA	3	True	AATAAA	-18	NA	75466939	75406927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUSG00000058600.14_34440651_34443337_1	chr15	-	455	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	3	777	junction_4	1906.75842400132	2434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443312
ENSMUSG00000058600.14_34440651_34443405_1	chr15	-	505	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	381	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	6733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443686_1	chr15	-	786	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	100	0	100	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	6815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	43	False	NA	-20	True	AATAAA	-27	NA	34443686	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058638.15_12568964_12584252_1	chr7	+	3063	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	276	252	0	-252	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACCTTTGAGGAATTTTT	NA	False	NA	NA	False	NA	NA	NA	12568963	12584252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUSG00000058638.15_12568964_12584507_1	chr7	+	3318	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	276	-3	0	3	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	30	True	NA	NA	NA	12568963	12584507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUSG00000058638.15_12581963_12584507_1	chr7	+	2247	2	ISM	ENSMUSG00000058638.15	ENSMUST00000168247.2	2499	7	12553	-655	11745	3	3prime_fragment	FALSE	canonical	3	304	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	30	True	NA	NA	NA	12581962	12584507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_+_12582026_12582323
ENSMUSG00000058655.10_101982299_102003871_1	chr15	+	2026	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	91	1737	0	237	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101982298	102003871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101982299_102005017_1	chr15	+	3172	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	91	591	0	-591	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGATTGAGCAAGGTCCT	NA	False	NA	17	True	AATAAA	-13	NA	101982298	102005017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101982299_102005608_1	chr15	+	3763	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	91	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	1680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982298	102005608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101998490_102003871_1	chr15	+	771	7	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	16282	1737	4031	237	3prime_fragment	FALSE	canonical	3	820	junction_6	39.4985935051982	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101998489	102003871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_+_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058709.12_26858084_26866227_1	chr7	-	1283	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_4	214.357085257287	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26866227	26858083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864867_26865154_26866108
ENSMUSG00000058709.12_26858084_26866227_2	chr7	-	1743	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26866227	26858083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864407_26865154_26866108
ENSMUSG00000058748.10_4663167_4679549_1	chr8	+	1800	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	0	169	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	75.6405975650642	207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATGTGGTAAAGTCTTT	NA	False	NA	5	True	NA	NA	NA	4663166	4679549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_4663279_4674903_4675022_4675839_4675967_4676163_4676225_4678167
ENSMUSG00000058748.10_4663167_4679549_2	chr8	+	1682	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	682	0	169	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATGTGGTAAAGTCTTT	NA	False	NA	5	True	NA	NA	NA	4663166	4679549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
ENSMUSG00000058756.14_98654285_98659832_1	chr11	+	1307	3	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	21648	0	9873	0	3prime_fragment	FALSE	canonical	3	46	junction_2	2	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	7521	False	NA	29	True	NA	NA	NA	98654284	98659832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_98654614_98655103_98655232_98658982
ENSMUSG00000058793.15_132127859_132147305_1	chr2	+	1408	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	6665	0	57	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTCATTTTTTTTTCT	NA	False	NA	12	True	AATGAA	-14	NA	132127858	132147305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ENSMUSG00000058799.17_111309103_111331007_1	chr10	+	1315	14	FSM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	15	182	0	3	multi-exon	FALSE	canonical	3	75	junction_13	616.19895158057	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTGGGAAATTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	111309102	111331007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ENSMUSG00000058799.17_111309103_111332745_1	chr10	+	1302	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.243529626816	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111309103_111332745_2	chr10	+	2115	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	-765	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUSG00000058799.17_111309103_111334011_1	chr10	+	3381	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	-2031	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGTGATATTTGAAGTT	NA	False	NA	NA	False	AATAAA	-24	NA	111309102	111334011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUSG00000058833.12_70956945_70958758_1	chr8	-	645	3	FSM	ENSMUSG00000058833.12	ENSMUST00000138196.2	542	3	0	-103	0	0	multi-exon	FALSE	canonical	3	841	junction_1	23	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70958758	70956944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405
ENSMUSG00000058833.12_70956945_70959389_1	chr8	-	581	4	NIC	ENSMUSG00000058833.12	novel	671	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	348.934887272046	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959389	70956944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_-_70957160_70958405_70958611_70959146_70959230_70959311
ENSMUSG00000058835.15_22830376_22930116_2	chr2	-	2978	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	91	291	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930116	22830375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000059005.14_75489624_75496465_1	chr2	+	1851	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	13	3286	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	1723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_75489624_75496465_2	chr2	+	1917	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	19	-282	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_75489624_75496849_2	chr2	+	2235	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	13	2902	0	384	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	1781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGCATGCTTTC	7494	False	NA	20	True	AATAAA	-20	NA	75489623	75496849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059182.9_51836146_51989512_1	chr6	-	1621	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	17	1744	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUSG00000059182.9_51836146_51989512_2	chr6	-	1686	13	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	141.475753713804	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_51836616_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUSG00000059183.13_65343064_65359699_1	chr9	+	1405	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	637	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTGTATCCTTTGAAG	NA	False	NA	27	True	AATAAA	-28	NA	65343063	65359699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUSG00000059208.16_33865207_33904366_1	chr17	-	2347	16	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	491.668786436108	2212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	5767	False	NA	-2	True	AATAAA	-19	NA	33904366	33865206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ENSMUSG00000059208.16_33865207_33904366_2	chr17	-	2464	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	5767	False	NA	-2	True	AATAAA	-19	NA	33904366	33865206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ENSMUSG00000059208.16_33865207_33904366_3	chr17	-	2311	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	663.597631344877	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	5767	False	NA	-2	True	AATAAA	-19	NA	33904366	33865206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885620_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ENSMUSG00000059248.14_117223254_117251476_1	chr11	+	1175	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	83	1674	0	-216	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTCCATCCATCTCTT	NA	False	NA	NA	False	NA	NA	NA	117223253	117251476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059278.10_69286313_69287506_2	chr11	+	540	3	NIC	ENSMUSG00000059278.10	novel	671	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	615.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286312	69287506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_69286508_69287002_69287187_69287345
ENSMUSG00000059278.10_69286640_69287506_1	chr11	+	504	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	167	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286639	69287506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69286799_69287002_69287187_69287345
ENSMUSG00000059291.16_135776665_135780704_1	chr4	-	1210	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	-377	0	377	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	16160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCTGTCACTAGTGATC	NA	False	NA	-1	True	ATTAAA	-23	NA	135780704	135776664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUSG00000059291.16_135777258_135780704_1	chr4	-	1247	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	-397	-43	0	0	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	7994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
ENSMUSG00000059291.16_135777258_135780704_2	chr4	-	617	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	216	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	15885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUSG00000059291.16_135777258_135780704_3	chr4	-	810	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5002.5285446462	8648	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780465
ENSMUSG00000059355.14_85807602_85808961_1	chr8	+	682	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	233	7	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807601	85808961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
ENSMUSG00000059363.11_24239120_24257969_1	chr19	-	811	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	303	0	106	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTCCCCGGACCTGGCT	NA	False	NA	-7	True	AAAAAG	-15	NA	24257969	24239119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUSG00000059423.14_147911329_147932880_1	chr4	-	409	4	FSM	ENSMUSG00000059423.14	ENSMUST00000105718.8	4238	4	-57	3886	-57	-125	multi-exon	FALSE	canonical	3	42	junction_2	6.37704215656966	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTCAGTGGCATGAAAGAA	3884	False	NA	NA	False	NA	NA	NA	147932880	147911328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147911404_147912866_147912928_147913126_147913254_147932734
ENSMUSG00000059436.14_76984043_77008992_1	chr12	-	2033	5	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008992	76984042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059436.14_76984449_77008992_1	chr12	-	1542	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	-17	401	-17	-401	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTCTGTGTGTATTTC	NA	False	NA	0	True	CATAAA	-19	NA	77008992	76984448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059518.15_137011044_137016397_1	chr5	-	704	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	478	26	0	0	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137016397	137011043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
ENSMUSG00000059552.14_69471231_69482699_1	chr11	+	1725	10	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.180714971983	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_69471342_69477716_69477800_69478176_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059669.9_24548610_24608538_1	chr12	+	1957	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	252	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548609	24608538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUSG00000059714.14_36134239_36143683_1	chr17	+	1708	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	117	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134238	36143683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUSG00000059734.8_3958870_3962750_1	chr19	-	825	6	NIC	ENSMUSG00000059734.8	novel	780	7	NA	NA	-16	0	intron_retention	FALSE	canonical	3	1174	junction_5	317.835806667531	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962750	3958869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961747_3962709
ENSMUSG00000059772.13_126289850_126294917_1	chr7	-	1903	6	FSM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	39	1210	0	0	multi-exon	FALSE	canonical	3	82	junction_4	7.98498591107085	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAAAGTTCTAGCCG	5026	False	NA	NA	False	NA	NA	NA	126294917	126289849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
ENSMUSG00000059796.17_69557762_69563249_1	chr11	-	1880	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	-106	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	8886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563249	69557761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059796.17_69558048_69563141_1	chr11	-	1486	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	2	286	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	4935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACACTAATGCATTTC	NA	False	NA	61	True	NA	NA	NA	69563141	69558047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059811.14_80156492_80203482_1	chr17	-	2875	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	70	673	-2	0	multi-exon	TRUE	canonical	3	301	junction_5	41.6619997386374	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAAGTTGTGATTCTTTTT	3821	False	NA	NA	False	ATTAAA	-21	NA	80203482	80156491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ENSMUSG00000059820.15_50517293_50528567_1	chr9	-	2366	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	197	753	0	-749	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGGCCAGATGTGCC	103	False	NA	NA	False	AATAAA	-19	NA	50528567	50517292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
ENSMUSG00000059897.6_69661698_69680633_1	chr8	+	438	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	8	2555	0	-113	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGTAGATTACTGTAC	7208	False	NA	NA	False	NA	NA	NA	69661697	69680633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUSG00000059920.10_64586092_64591302_1	chr16	-	1707	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	3593	222	-3593	multi-exon	FALSE	canonical	3	170	junction_1	18.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTTTACTGCTTAGAC	NA	False	NA	-1	True	AATAAA	-17	NA	64591302	64586091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059920.10_64586467_64591302_1	chr16	-	1332	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	3968	222	-3968	multi-exon	FALSE	canonical	3	170	junction_1	18.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGTGTGCCTTAGAA	NA	False	NA	-18	True	AATAAA	-20	NA	64591302	64586466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059923.14_115534871_115599262_1	chr11	-	2548	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	161	0	140	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4631	False	NA	-1	True	AATAAA	-19	NA	115599262	115534870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUSG00000059923.14_115536250_115599262_1	chr11	-	1169	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	161	1379	140	-774	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTGGTATTTTCTCTA	4631	False	NA	NA	False	AATAAA	-15	NA	115599262	115536249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUSG00000060036.15_79961824_79967554_1	chr15	-	1466	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	53	-168	0	168	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	69861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCGGCTCCACATTTCTT	3571	False	NA	NA	False	NA	NA	NA	79967554	79961823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_1	chr15	-	1279	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	764	junction_9	9382.12445077748	69762	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966765_79967524
ENSMUSG00000060036.15_79961992_79967554_2	chr15	-	1478	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	70012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_3	chr15	-	2396	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
ENSMUSG00000060038.15_85798930_85801791_1	chr8	+	1187	8	ISM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	544	0	0	0	3prime_fragment	FALSE	canonical	3	191	junction_1	37.2788718406859	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798929	85801791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000060063.10_149201789_149224963_1	chr5	+	1039	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	212	0	212	0	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201788	149224963	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUSG00000060073.10_71021489_71041279_1	chr12	+	910	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	94	1842	0	0	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	3640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041711_1	chr12	+	1342	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	94	1410	0	16	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	3773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGCAGTGCCCAG	4814	False	NA	NA	False	NA	NA	NA	71021488	71041711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060090.17_20230814_20264195_1	chrX	+	1426	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	94	2897	0	-2897	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGCAGTTTTATTT	NA	False	NA	NA	False	CATAAA	-18	NA	20230813	20264195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060090.17_20230814_20264424_1	chrX	+	1655	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	94	2668	0	-2668	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATACATAGCCAGTTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	20230813	20264424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060098.12_106937655_106978326_1	chr8	+	2285	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	87	1100	0	-1100	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1906	False	NA	26	True	AATAAA	-27	NA	106937654	106978326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
ENSMUSG00000060098.12_106937655_106978326_2	chr8	+	2188	17	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	0	-1100	combination_of_known_splicesites	FALSE	canonical	3	37	junction_16	255.302516634678	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1906	False	NA	26	True	AATAAA	-27	NA	106937654	106978326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106978110
ENSMUSG00000060121.16_59060179_59075185_1	chr12	+	1517	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	71	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	AATAAA	-27	NA	59060178	59075185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_59060240_59074732_1	chr12	+	1003	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	61	524	0	59	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060239	59074732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_59060240_59074732_2	chr12	+	946	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	0	59	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_9	268.690009095341	308	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060239	59074732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074579
ENSMUSG00000060126.15_76082772_76085738_1	chr14	+	813	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	239	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	12705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ENSMUSG00000060147.16_34101910_34119831_1	chr13	-	1491	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	152.257092518615	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8607	False	NA	-7	True	AATAAA	-19	NA	34119831	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119601
ENSMUSG00000060147.16_34101910_34119831_2	chr13	-	1343	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8607	False	NA	-7	True	AATAAA	-19	NA	34119831	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
ENSMUSG00000060147.16_34101910_34119961_1	chr13	-	1318	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	220	9	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8477	False	NA	-7	True	AATAAA	-19	NA	34119961	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000060147.16_34101910_34119961_2	chr13	-	1540	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	105	9	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8477	False	NA	-7	True	AATAAA	-19	NA	34119961	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
ENSMUSG00000060147.16_34101910_34120066_1	chr13	-	1423	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	115	9	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8372	False	NA	-7	True	AATAAA	-19	NA	34120066	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000060149.8_17171814_17194419_1	chr17	+	2078	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	-480	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171813	17194419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ENSMUSG00000060152.15_115376106_115379031_1	chr5	+	734	5	ISM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	2211	19	0	6	3prime_fragment	FALSE	canonical	3	535	junction_1	139.257629952545	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACTTGCCTTGAATGT	NA	False	NA	17	True	AATAAA	-19	NA	115376105	115379031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
ENSMUSG00000060216.16_70323471_70331501_1	chr11	+	1737	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	-8	119	0	1	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTATGTGTTCTGT	NA	False	NA	15	True	AATAAA	-15	NA	70323470	70331501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUSG00000060314.14_140390896_140402069_1	chr7	-	2581	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-24	1294	-10	-1294	multi-exon	FALSE	canonical	3	50	junction_1	4	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTAAGCATGTTGTTTT	NA	False	NA	NA	False	AAGAAA	-7	NA	140402069	140390895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140393228_140398500_140398628_140401947
ENSMUSG00000060373.16_52311909_52341456_1	chr14	-	1704	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	6	907	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	1669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52311909_52341456_2	chr14	-	1657	8	NIC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52311909_52341456_3	chr14	-	1678	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-30	-347	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	1330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_1	chr14	-	1333	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	8	350	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52312259_52341456_2	chr14	-	1307	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_3	chr14	-	1346	8	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1238.64623270566	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_6	chr14	-	1367	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_7	chr14	-	1354	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	6	1257	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060376.8_25329371_25358179_1	chr7	-	1672	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	227	0	227	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9909	False	NA	-9	True	AGTAAA	-19	NA	25358179	25329370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
ENSMUSG00000060450.15_38429747_38450897_1	chr18	+	1654	4	FSM	ENSMUSG00000060450.15	ENSMUST00000237416.2	618	4	-6	-1030	0	2	multi-exon	FALSE	canonical	0	0	junction_3	98.2694707876708	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	985	False	NA	18	True	AATAAA	-23	NA	38429746	38450897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433538_38449577
ENSMUSG00000060461.6_78274334_78275310_1	chr9	-	470	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	149	0	149	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	1483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275310	78274333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUSG00000060586.12_34524900_34535174_1	chr17	+	1136	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	59	474	0	1	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	13	True	AATAAA	-17	NA	34524899	34535174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060675.14_7534850_7563154_1	chr19	+	979	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	922	0	-922	multi-exon	TRUE	canonical	3	44	junction_1	71.8135606971274	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	13	True	AATAAA	-15	NA	7534849	7563154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060675.14_7534850_7563154_2	chr19	+	741	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	26	2756	0	-922	multi-exon	FALSE	canonical	3	141	junction_1	31.8825971338597	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	13	True	AATAAA	-15	NA	7534849	7563154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060703.13_60082337_60114495_1	chr2	-	1017	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	337	0	267	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4269	False	NA	-4	True	AATAAA	-15	NA	60114495	60082336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUSG00000060739.9_97267492_97274381_1	chr13	-	1076	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	64	1560	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	1308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGGCATAACGGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	97274381	97267491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000060743.13_180630130_180641122_1	chr1	-	1030	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	-10	-132	-10	132	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	4337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	180641122	180630129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
ENSMUSG00000060798.8_40594916_40609047_1	chr3	+	1155	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	50157	0	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594915	40609047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_+_40595159_40608135
ENSMUSG00000060802.9_121978167_121983354_1	chr2	+	650	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	210	0	-210	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTGATCATATGCCAAAC	NA	False	NA	NA	False	AATAAA	-18	NA	121978166	121983354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUSG00000060904.15_88567231_88579066_1	chr10	+	889	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	890	301	-890	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGAGAGGGTTAGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	88567230	88579066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060904.15_88567231_88579237_1	chr10	+	1060	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	719	301	-719	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGGTTGCATCTTGTTT	NA	False	NA	37	True	ATTAAA	-39	NA	88567230	88579237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060904.15_88567231_88579956_1	chr10	+	1779	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	0	301	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88567230	88579956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060923.6_30455991_30599423_1	chr11	-	705	3	NNC	ENSMUSG00000060923.6	novel	863	4	NA	NA	164	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	14.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599423	30455990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_30456440_30582207_30582341_30599300
ENSMUSG00000060950.13_111644550_111649573_1	chr12	+	1218	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	0	-763	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCCTGGGTTTTGAGA	NA	False	NA	11	True	NA	NA	NA	111644549	111649573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ENSMUSG00000060950.13_111644550_111650336_1	chr12	+	1981	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644549	111650336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ENSMUSG00000061028.8_19314966_19319064_1	chr7	-	487	8	ISM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	19322	-2	0	0	3prime_fragment	TRUE	canonical	3	34	junction_6	83.6513659207557	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	8185	False	NA	-7	True	AATAAA	-23	NA	19319064	19314965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014
ENSMUSG00000061079.15_109660917_109694017_1	chr7	+	2423	16	FSM	ENSMUSG00000061079.15	ENSMUST00000211798.2	2631	16	0	208	0	2	multi-exon	TRUE	canonical	3	74	junction_4	56.3191698171137	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATGTCTGGATTGTTTG	NA	False	NA	15	True	AATAAA	-28	NA	109660916	109694017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ENSMUSG00000061086.13_104475131_104478041_1	chr11	+	562	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3980	-6	-659	0	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104475130	104478041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUSG00000061119.8_92524508_92582405_1	chr7	+	1533	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	48	1386	0	-817	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTTTTCTTTTA	NA	False	NA	NA	False	AATGAA	-18	NA	92524507	92582405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061119.8_92524508_92583222_1	chr7	+	2350	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	48	569	0	0	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTGAAAAAGTAGAATG	NA	False	NA	102	True	AATAAA	-24	NA	92524507	92583222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061126.6_32701002_32712126_1	chr17	+	1760	9	NNC	ENSMUSG00000061126.6	novel	1599	12	NA	NA	3777	-122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	22.4523801633591	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCCATCTCATCCGGT	NA	False	NA	NA	False	AGTAAA	-17	NA	32701001	32712126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275_32711738_32711759
ENSMUSG00000061126.6_32701002_32712250_1	chr17	+	1884	9	NNC	ENSMUSG00000061126.6	novel	1599	12	NA	NA	3777	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	22.4523801633591	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTGCTCCGTTTATT	NA	False	NA	NA	False	ACTAAA	-20	NA	32701001	32712250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275_32711738_32711759
ENSMUSG00000061130.14_85301433_85322119_1	chr17	+	1949	5	ISM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	36006	0	325	0	3prime_fragment	FALSE	canonical	3	718	junction_4	374.08855903382	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCACACTTTGGCTCAG	NA	False	NA	6	True	AATAAA	-22	NA	85301432	85322119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
ENSMUSG00000061130.14_85301522_85324625_1	chr17	+	2523	5	ISM	ENSMUSG00000061130.14	ENSMUST00000234851.2	1307	7	414	6582	414	0	5prime_fragment	FALSE	canonical	3	708	junction_4	378.362921016317	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85301521	85324625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
ENSMUSG00000061232.17_34214998_34219258_1	chr17	-	1772	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	NA	False	NA	-11	True	AATAAA	-25	NA	34219258	34214997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
ENSMUSG00000061286.8_25358637_25367457_1	chr7	+	1105	7	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	577.0184861279	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358636	25367457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_25358809_25360685_25360819_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUSG00000061306.17_119995278_119997292_1	chr11	-	1618	2	FSM	ENSMUSG00000061306.17	ENSMUST00000146641.2	971	2	522	-1169	522	0	multi-exon	FALSE	canonical	3	392	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	NA	False	NA	-12	True	AATAAA	-12	NA	119997292	119995277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_119996863_119997259
ENSMUSG00000061360.9_81749518_81756112_1	chr15	-	866	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	0	797	0	152	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	-4	True	AATAAA	-22	NA	81756112	81749517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
ENSMUSG00000061374.15_5010058_5016237_1	chr7	-	2479	4	NNC	ENSMUSG00000061374.15	novel	2306	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4272	False	NA	-4	True	AATAAA	-14	NA	5016237	5010057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5016207
ENSMUSG00000061374.15_5010058_5016237_2	chr7	-	2522	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	0	-216	0	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4272	False	NA	-4	True	AATAAA	-14	NA	5016237	5010057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_5012205_5015676_5016022_5016207
ENSMUSG00000061374.15_5010058_5017652_1	chr7	-	2478	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2857	False	NA	-4	True	AATAAA	-14	NA	5017652	5010057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5017623
ENSMUSG00000061474.12_100872463_100881096_1	chr13	-	624	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	69	-122	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881096	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
ENSMUSG00000061474.12_100872463_100881584_2	chr13	-	917	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
ENSMUSG00000061474.12_100872463_100881584_3	chr13	-	1009	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_100872463_100881584_4	chr13	-	1035	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
ENSMUSG00000061474.12_100872463_100881584_5	chr13	-	1118	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	-417	0	-417	0	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUSG00000061474.12_100872637_100881096_1	chr13	-	456	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	71	174	0	0	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881096	100872636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUSG00000061474.12_100872637_100881584_1	chr13	-	861	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
ENSMUSG00000061474.12_100872637_100881584_4	chr13	-	835	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_100872637_100881584_5	chr13	-	743	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
ENSMUSG00000061477.5_28681082_28685880_1	chr12	-	745	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	10789	junction_4	2678.95028695943	2385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685663_28685854
ENSMUSG00000061477.5_28681082_28685952_1	chr12	-	725	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	229	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	20220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685952	28681081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061479.16_26886432_26895449_1	chr7	-	1115	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	221	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895449	26886431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUSG00000061479.16_26886432_26895578_1	chr7	-	1244	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	92	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	2122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895578	26886431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUSG00000061518.12_36730565_36732467_1	chr1	+	570	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	295	0	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	4556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730564	36732467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061518.12_36730565_36732617_1	chr1	+	720	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	145	0	-145	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	4607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGCTGTTATTTGTT	NA	False	NA	9	True	TTTAAA	-16	NA	36730564	36732617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061559.16_54624443_54641766_1	chr9	-	1253	11	NIC	ENSMUSG00000061559.16	novel	1162	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_9	332.004593341719	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5458	False	NA	-3	True	AATAAA	-19	NA	54641766	54624442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641652
ENSMUSG00000061613.14_31866055_31877687_1	chr17	-	712	6	FSM	ENSMUSG00000061613.14	ENSMUST00000236475.2	532	6	28	-208	-10	0	multi-exon	FALSE	canonical	3	82	junction_5	2542.17667364013	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31877626
ENSMUSG00000061613.14_31866055_31877687_2	chr17	-	800	7	NIC	ENSMUSG00000061613.14	novel	923	8	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	95	junction_5	2338.47820886433	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_3	chr17	-	867	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	179	0	-10	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	1725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061650.7_59839032_59851949_1	chr11	+	838	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	1082	0	-1082	multi-exon	FALSE	canonical	3	425	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATTGTTTTGAAAGGC	NA	False	NA	11	True	ATTAAA	-17	NA	59839031	59851949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59839305_59851384
ENSMUSG00000061689.16_156562966_156604880_1	chr2	+	1430	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	1	164	0	5	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGTTTCTCACCCTTCAG	NA	False	NA	16	True	ATTAAA	-19	NA	156562965	156604880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061759.16_4382620_4405140_1	chr10	+	2275	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	153	1	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	8	True	AATAAA	-17	NA	4382619	4405140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUSG00000061838.8_95451123_95695781_1	chr6	-	2234	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	1133	0	0	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	579	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCACAGTTCTTGTTTCT	NA	False	NA	-7	True	AATAAA	-22	NA	95695781	95451122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ENSMUSG00000061904.13_90952653_90959829_1	chr10	-	1303	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	92	217	-10	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	5536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061983.8_23661096_23663100_1	chr10	-	607	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	-113	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	23341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ENSMUSG00000061983.8_23661096_23663100_2	chr10	-	504	6	NNC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1675.75719004873	24806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662883_23662943_23663053
ENSMUSG00000061983.8_23661096_23663100_3	chr10	-	1479	4	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	2594	junction_3	461.374757292449	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_23661172_23661473_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_23661096_23663100_4	chr10	-	630	6	NNC	ENSMUSG00000061983.8	novel	490	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	19	junction_4	1824.56125136976	572	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662774_23662891_23662943_23663053
ENSMUSG00000061983.8_23661096_23663100_6	chr10	-	635	6	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_23661096_23663100_7	chr10	-	609	5	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2594	junction_4	866.215439426012	10094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663100	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662943_23663053
ENSMUSG00000062006.13_130520488_130523970_1	chr3	-	1418	4	ISM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	16	8	0	0	intron_retention	FALSE	canonical	3	7006	junction_1	1068.10122283528	10179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523970	130520487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877
ENSMUSG00000062006.13_130520488_130523970_2	chr3	-	691	6	NNC	ENSMUSG00000062006.13	novel	480	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4156.35626961886	10156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523970	130520487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523151_130523440_130523966
ENSMUSG00000062006.13_130520488_130523970_3	chr3	-	666	6	NNC	ENSMUSG00000062006.13	novel	480	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4156.11671635915	10148	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523970	130520487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523176_130523440_130523966
ENSMUSG00000062014.14_47049131_47059647_1	chr14	-	600	7	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	212.21091447478	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059647	47049130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_47049281_47051700_47051775_47052361_47052451_47053055_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUSG00000062054.8_21366415_21370156_1	chr12	+	687	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	0	1203	0	-621	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCAATTTTGCTACTC	NA	False	NA	19	True	NA	NA	NA	21366414	21370156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
ENSMUSG00000062054.8_21366415_21373608_1	chr12	+	904	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	25	212	0	-212	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000062054.8_21366415_21373608_2	chr12	+	872	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000062070.13_105230769_105247305_1	chrX	+	1762	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	63	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	6478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230768	105247305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
ENSMUSG00000062075.14_80738632_80754079_1	chr10	-	1936	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	0	1434	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTAGTCCTTGGTCTGT	3111	False	NA	-6	True	NA	NA	NA	80754079	80738631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUSG00000062169.14_180978496_180993951_1	chr1	+	660	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	2608	0	5	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTTTGTAGATTTCT	NA	False	NA	8	True	AATAAA	-1	NA	180978495	180993951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ENSMUSG00000062175.14_156682020_156697490_1	chr2	+	2807	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	93	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_156682159_156686075_156686302_156695048
ENSMUSG00000062190.13_57680072_57716427_1	chr6	+	3018	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	451	-960	0	3	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGAGTCTTAATATTT	NA	False	NA	11	True	AATAAA	-21	NA	57680071	57716427	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
ENSMUSG00000062198.6_55092461_55127225_1	chr12	-	1420	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	-330	15	-330	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127225	55092460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_55092461_55201741_1	chr12	-	1095	8	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-60	0	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55201741	55092460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
ENSMUSG00000062270.15_89974208_89996693_1	chr9	-	1317	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	75	490	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	1842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996693	89974207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062270.15_89974208_89996751_1	chr9	-	1258	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	76	490	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996751	89974207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062328.9_75133548_75136345_1	chr18	+	943	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1972.2719285129	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_2	chr18	+	668	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	107	0	-106	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	21633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_4	chr18	+	1166	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1793.50557568132	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75135194_75135731_75135924_75136264
ENSMUSG00000062352.16_21320705_21336194_1	chr12	-	1186	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	-96	611	-8	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAAGAGAAGCCTTGG	NA	False	NA	-11	True	AATAAA	-14	NA	21336194	21320704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
ENSMUSG00000062352.16_21320705_21336194_2	chr12	-	932	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	91	898	-8	0	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAAGAGAAGCCTTGG	NA	False	NA	-11	True	AATAAA	-14	NA	21336194	21320704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ENSMUSG00000062376.8_46678345_46690213_1	chr19	+	568	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	1608	0	-1608	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGACTCGT	9071	False	NA	NA	False	NA	NA	NA	46678344	46690213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUSG00000062376.8_46678345_46690348_1	chr19	+	703	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	1473	0	-1473	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCTCAGCTTGTTAAAA	9071	False	NA	NA	False	AATAAA	-32	NA	46678344	46690348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUSG00000062397.9_36999245_37007646_1	chr15	-	2443	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	0	1974	0	1627	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTCTAATTTCTTGTACC	155	False	NA	-6	True	ATTAAA	-19	NA	37007646	36999244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
ENSMUSG00000062397.9_37000872_37007646_1	chr15	-	816	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	0	3601	0	0	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACCGCAGGATAAATGG	155	False	NA	-26	True	AATAAA	-18	NA	37007646	37000871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
ENSMUSG00000062510.13_190795209_190816755_1	chr1	+	2929	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	0	-1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	16	True	AATAAA	-20	NA	190795208	190816755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
ENSMUSG00000062580.10_135229284_135241516_1	chr1	-	947	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	6333	0	270	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCTTTGAAAGTTAGA	NA	False	NA	-17	True	AATAAA	-18	NA	135241516	135229283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ENSMUSG00000062580.10_135229418_135241516_1	chr1	-	813	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	6467	0	136	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATATGAGCTTAGAA	NA	False	NA	-6	True	AATAAA	-19	NA	135241516	135229417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ENSMUSG00000062627.10_94860104_94867312_1	chr4	-	1270	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	0	-566	0	566	multi-exon	FALSE	canonical	3	64	junction_1	6	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATAGCATATACTCTT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_94861226_94863453_94863530_94867240
ENSMUSG00000062647.17_26800829_26803330_1	chr2	+	1036	7	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	4686	junction_6	264.743114483959	3373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062683.12_102571299_102579562_1	chr15	-	2656	4	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3206	junction_3	741.096634874442	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_2	chr15	-	715	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1923.79668559336	7624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_102571564_102573488_102573683_102574197_102574271_102576141_102576215_102579452
ENSMUSG00000062691.11_79224129_79227735_1	chr17	+	937	5	NIC	ENSMUSG00000062691.11	novel	443	2	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	686.839500902503	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79224128	79227735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_79224490_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062753.15_27782743_27784682_1	chr17	-	618	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	48	196	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
ENSMUSG00000062797.15_89567896_89590230_2	chr7	-	883	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	182	1159	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590230	89567895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062797.15_89567896_89590373_1	chr7	-	1026	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	39	1159	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590373	89567895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062797.15_89568128_89590373_1	chr7	-	556	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	34	216	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAAGTCAAAAGGGTCA	NA	False	NA	-10	True	AATAAA	-24	NA	89590373	89568127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ENSMUSG00000062797.15_89568128_89590373_2	chr7	-	794	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	39	1391	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAAGTCAAAAGGGTCA	NA	False	NA	-10	True	AATAAA	-24	NA	89590373	89568127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062867.14_108437669_108442772_1	chr9	+	1663	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	184	11	0	4	multi-exon	FALSE	canonical	3	1280	junction_13	396.993628196225	3769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_2	chr9	+	1735	15	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	848.284297862456	3772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062908.13_153627994_153650081_1	chr3	-	1859	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	188	0	2	0	multi-exon	TRUE	canonical	3	875	junction_11	59.2580851965116	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	180	False	NA	-6	True	AATAAA	-16	NA	153650081	153627993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
ENSMUSG00000062908.13_153627994_153650081_2	chr3	-	1962	11	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	2	0	intron_retention	FALSE	canonical	3	875	junction_10	61.0908340096941	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	180	False	NA	-6	True	AATAAA	-16	NA	153650081	153627993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644805_153647519_153647608_153650032
ENSMUSG00000062929.9_54907081_54909604_1	chr12	-	1403	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	58	1479	-21	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909604	54907080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUSG00000062929.9_54907081_54909604_2	chr12	-	1260	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	-21	1487	-21	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909604	54907080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ENSMUSG00000062931.16_82063270_82077114_1	chr10	-	393	3	ISM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	0	2582	0	-2582	5prime_fragment	FALSE	canonical	3	139	junction_1	4.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGTGAGGAGTTTTAAA	NA	False	NA	-25	True	NA	NA	NA	82077114	82063269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_82063426_82063632_82063760_82077004
ENSMUSG00000062937.8_89055652_89098327_1	chr4	+	1513	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	293	991	293	616	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACTTAGAGAACTTTGAA	5341	False	NA	NA	False	AATAAA	-17	NA	89055651	89098327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062937.8_89055652_89098460_1	chr4	+	1646	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	293	858	293	749	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5341	False	NA	NA	False	AATAAA	-15	NA	89055651	89098460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062937.8_89055652_89099318_1	chr4	+	2504	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	293	0	293	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5341	False	NA	NA	False	NA	NA	NA	89055651	89099318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062963.11_171116138_171122344_1	chr1	-	874	6	ISM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	170	-129	169	0	3prime_fragment	FALSE	canonical	3	36	junction_3	231.021211147375	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGGTTCTCATTGA	7536	False	NA	-2	True	AATAAA	-16	NA	171122344	171116137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206
ENSMUSG00000062981.6_95316561_95337802_1	chr10	-	770	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	-109	0	106	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	1161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTCTTTTATTTATTTT	NA	False	NA	98	True	ATTAAA	-16	NA	95337802	95316560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_1	chr10	-	1117	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_2	1514.28562695418	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_95316840_95326107_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_2	chr10	-	743	7	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	1766.8786665253	1090	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_95316840_95326107_95326275_95326648_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_3	chr10	-	790	8	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_3	1840.73094399026	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_-_95316840_95326107_95326275_95326396_95326444_95326648_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062995.13_8630527_8778154_1	chr6	-	1745	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	330	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	-20	True	NA	-1	True	AATAAA	-35	NA	8778154	8630526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
ENSMUSG00000062997.7_38891592_38895173_2	chr2	-	483	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	463	0	-39	0	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	7660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895173	38891591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ENSMUSG00000063011.8_25967587_25967955_1	chr17	-	299	2	ISM	ENSMUSG00000063011.8	ENSMUST00000075884.8	2114	16	5333	0	927	0	3prime_fragment	FALSE	canonical	3	51	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	4131	False	NA	-2	True	AATAAA	-22	NA	25967955	25967586	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_25967805_25967874
ENSMUSG00000063018.7_7278345_7295871_1	chrX	-	708	3	ISM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	15511	0	-6644	0	3prime_fragment	FALSE	canonical	3	36	junction_1	10.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	NA	False	NA	-31	True	NA	NA	NA	7295871	7278344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_7278772_7290368_7290524_7295745
ENSMUSG00000063019.6_157209514_157238683_1	chr2	+	1085	4	NNC	ENSMUSG00000063019.6	novel	1107	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	116	junction_3	158.190461856024	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_157209561_157220968_157221175_157237829_157238611_157238632
ENSMUSG00000063049.5_48121559_48127744_1	chr8	-	1017	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	449	1346	449	231	multi-exon	FALSE	canonical	3	212	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACCTTAATTTTCTG	NA	False	NA	-13	True	ATTAAA	-16	NA	48127744	48121558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_48122372_48127540
ENSMUSG00000063052.10_157742359_157772727_1	chr3	+	2611	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	3	146	junction_2	190.962278254048	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	30	True	AATAAA	-45	NA	157742358	157772727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ENSMUSG00000063052.10_157742359_157772727_2	chr3	+	2685	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	60	1397	0	1	multi-exon	FALSE	canonical	3	641	junction_2	81.4479926714224	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	30	True	AATAAA	-45	NA	157742358	157772727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ENSMUSG00000063172.14_107110790_107137130_1	chr4	+	671	6	NNC	ENSMUSG00000063172.14	novel	581	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.089135660755	186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGATTCCATTTTTTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	107110789	107137130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_107110919_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063179.14_130972885_130989568_1	chr7	+	825	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972884	130989568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_130972885_130994497_1	chr7	+	1167	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGTTTATACTTACAA	NA	False	NA	NA	False	AATAAA	-21	NA	130972884	130994497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
ENSMUSG00000063200.5_43551866_43555470_1	chr13	+	933	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	867	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555734_1	chr13	+	1197	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	603	0	164	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACCTCAGCTAGTACC	NA	False	NA	2	True	AATAAA	-17	NA	43551865	43555734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063235.19_90741057_90748140_1	chr2	-	1067	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	249	0	-127	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	False	NA	-1	True	AATAAA	-26	NA	90748140	90741056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ENSMUSG00000063245.12_146695418_146742069_1	chr4	+	798	7	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	127.685377218989	659	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146695586_146697966_146698060_146703608_146703692_146728915_146728962_146739355_146739420_146740274_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_2	chr4	+	810	7	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	127.839417499716	1065	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146695586_146697966_146698060_146703608_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063273.12_51323437_51381452_1	chr3	+	4136	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	1954	0	1813	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTGAATATTTCCACT	NA	False	NA	23	True	AATAAA	-16	NA	51323436	51381452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
ENSMUSG00000063281.10_24122689_24137787_1	chr18	+	2394	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	646	0	-646	multi-exon	FALSE	canonical	3	128	junction_1	18.5	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTCTTGCATCGTT	1059	False	NA	45	True	NA	NA	NA	24122688	24137787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUSG00000063316.14_101333264_101336355_1	chr11	+	474	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	140	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	16884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2381	False	NA	62	True	ATTAAA	-18	NA	101333263	101336355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUSG00000063320.12_82455685_82459041_1	chr10	-	598	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	-17	-175	-11	0	multi-exon	FALSE	canonical	3	187	junction_2	131	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459041	82455684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUSG00000063320.12_82455860_82458971_1	chr10	-	482	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	59	175	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82458971	82455859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458798
ENSMUSG00000063334.17_111808680_111822028_1	chr10	+	2603	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	111	2309	0	-771	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTTGTTTATGATGAAG	NA	False	NA	8	True	ATTAAA	-19	NA	111808679	111822028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
ENSMUSG00000063354.8_76496583_76501048_1	chr15	-	2222	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	536	-8	0	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ENSMUSG00000063354.8_76496583_76501048_2	chr15	-	1741	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
ENSMUSG00000063362.14_22550738_22558308_1	chr8	+	1624	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	1	3335	0	-1587	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCTAAATTTATTCTT	NA	False	NA	NA	False	NA	NA	NA	22550737	22558308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
ENSMUSG00000063406.12_108271827_108280415_1	chr5	-	1395	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	71	2334	0	-900	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	108280415	108271826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ENSMUSG00000063445.15_4529181_4536973_1	chr16	-	1182	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	1258	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4843	False	NA	-6	True	AATAAA	-18	NA	4536973	4529180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063445.15_4531275_4536973_1	chr16	-	1124	4	ISM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	3	1116	0	1098	5prime_fragment	FALSE	canonical	3	167	junction_3	9.79795897113271	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGCTAGGTTTTTTTG	4843	False	NA	NA	False	NA	NA	NA	4536973	4531274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063457.15_80128287_80129948_1	chr10	+	791	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	-192	-27	0	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	2594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80128695_80129475_80129711_80129800
ENSMUSG00000063457.15_80128287_80129948_2	chr10	+	634	4	NNC	ENSMUSG00000063457.15	novel	500	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	409	junction_1	3639.28063709788	2560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_80128452_80128608_80128695_80129475_80129711_80129800
ENSMUSG00000063480.9_81925538_81931746_1	chr15	-	1212	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	53	812	-10	141	multi-exon	FALSE	canonical	3	3045	junction_2	110	1667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGCTGTGCCTGATT	4959	False	NA	-19	True	AATAAA	-28	NA	81931746	81925537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81926570_81928097_81928219_81931687
ENSMUSG00000063480.9_81926200_81931746_1	chr15	-	550	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	53	1474	-10	-265	multi-exon	FALSE	canonical	3	3045	junction_2	110	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTATATTTTTATTTTT	4959	False	NA	-1	True	NA	NA	NA	81931746	81926199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81926570_81928097_81928219_81931687
ENSMUSG00000063511.12_45025887_45045116_1	chr7	-	1579	10	NNC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	468.433823409006	1125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_45026607_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063511.12_45025887_45045116_2	chr7	-	1755	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_10	573.136842298591	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044516_45044597_45044932
ENSMUSG00000063511.12_45025887_45045116_3	chr7	-	1735	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	570.766230605841	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45032548_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063524.14_150321697_150333330_1	chr4	+	1733	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	288	6	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	14542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150321697_150333330_2	chr4	+	1710	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	272	junction_1	4868.52726047112	8055	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_150321798_150323952_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150322157_150333330_1	chr4	+	1766	12	NIC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	4912.94730682809	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150322156	150333330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_150322291_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063576.13_46985476_46991729_1	chr17	-	1999	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	101	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991729	46985475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ENSMUSG00000063576.13_46985476_46991729_2	chr17	-	1846	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	111	-3	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991729	46985475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
ENSMUSG00000063646.19_37248424_37282643_1	chr5	+	2048	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5710	22702	0	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2480	False	NA	17	True	AATAAA	-20	NA	37248423	37282643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000063694.6_50541412_50543518_1	chr6	-	1254	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	1869	0	805	multi-exon	FALSE	canonical	3	4909	junction_2	335	3935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGATTGTGCTTTGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	50543518	50541411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063694.6_50541656_50543518_1	chr6	-	1010	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	2113	0	561	multi-exon	FALSE	canonical	3	4909	junction_2	335	3539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	50543518	50541655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063694.6_50542070_50543518_1	chr6	-	596	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	2527	0	147	multi-exon	FALSE	canonical	3	4909	junction_2	335	2793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTACGGTCTTTATTAA	NA	False	NA	NA	False	AGTAAA	-17	NA	50543518	50542069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063785.13_47345774_47371330_1	chrX	+	1389	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345773	47371330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
ENSMUSG00000063800.6_108422070_108436325_2	chr4	-	1305	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	208	3	208	0	multi-exon	FALSE	canonical	3	462	junction_7	44.4233283170614	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGCTTTTTGTTT	NA	False	NA	-11	True	ATTAAA	-17	NA	108436325	108422069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUSG00000063801.8_79529511_79570389_1	chr7	-	1367	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	8	4438	8	2748	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAGGTTCAGTGCTGTG	NA	False	NA	-6	True	AATACA	-15	NA	79570389	79529510	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ENSMUSG00000063802.6_4663520_4687980_1	chr7	-	1419	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4687980	4663519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
ENSMUSG00000063802.6_4663520_4687980_2	chr7	-	1506	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	87	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4687980	4663519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ENSMUSG00000063802.6_4663520_4688067_1	chr7	-	1506	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
ENSMUSG00000063849.7_57321244_57347383_1	chr9	-	1440	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	-4	1308	-3	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347383	57321243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUSG00000063884.7_71857624_71885746_1	chr6	-	2542	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	264.585833375751	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3036	False	NA	-3	True	AATAAA	-26	NA	71885746	71857623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063884.7_71858061_71885746_1	chr6	-	2156	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	-12	437	-12	-434	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGCTCTGTATTGTATT	3036	False	NA	NA	False	AATAAA	-23	NA	71885746	71858060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063888.8_47085424_47093582_1	chr17	-	2020	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-591	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGCGTGTGAGTACATG	NA	False	NA	-3	True	AGTAAA	-16	NA	47093582	47085423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47085424_47093582_2	chr17	-	2015	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	591	0	-591	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	2200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGCGTGTGAGTACATG	NA	False	NA	-3	True	AGTAAA	-16	NA	47093582	47085423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47086027_47093582_1	chr17	-	1417	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47086027_47093582_2	chr17	-	1412	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	1194	0	-1194	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	1910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47086425_47093582_1	chr17	-	1019	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47086425_47093582_2	chr17	-	1014	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	1592	0	-1592	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000064023.5_43447468_43453246_1	chr7	+	855	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	467	0	448	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	3344	False	NA	28	True	AATAAA	-18	NA	43447467	43453246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
ENSMUSG00000064037.14_31652097_31668761_1	chr5	+	1645	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	12	1487	0	558	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGGTAAGCTTTCCTG	NA	False	NA	26	True	GATAAA	-15	NA	31652096	31668761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ENSMUSG00000064068.16_89116394_89121214_1	chr3	-	1085	8	FSM	ENSMUSG00000064068.16	ENSMUST00000173477.8	892	8	-67	-126	0	0	multi-exon	FALSE	canonical	1	38	junction_5	268.396143407312	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGATCAAAGAATCCCTT	NA	False	NA	-22	True	AATAAA	-15	NA	89121214	89116393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000064068.16_89116394_89121214_2	chr3	-	1535	7	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	739	junction_1	41.4286535302963	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGATCAAAGAATCCCTT	NA	False	NA	-22	True	AATAAA	-15	NA	89121214	89116393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000064090.15_26421404_26543622_1	chr11	-	1795	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543622	26421403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
ENSMUSG00000064090.15_26421404_26543622_2	chr11	-	1591	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	298	0	0	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543622	26421403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
ENSMUSG00000064145.13_108481885_108526568_1	chr9	-	2212	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	243.725439467754	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526568	108481884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521565_108522131_108522194_108526427
ENSMUSG00000064194.11_42827012_42838930_1	chr7	+	509	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	2603	0	4	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTATCTTCGAATGCA	NA	False	NA	NA	False	NA	NA	NA	42827011	42838930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064194.11_42827012_42839352_1	chr7	+	709	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.192782198068	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAATCTCCGAATACATG	NA	False	NA	10	True	NA	NA	NA	42827011	42839352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947
ENSMUSG00000064194.11_42827012_42841355_1	chr7	+	2712	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.192782198068	229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCACTCTTTATA	NA	False	NA	6	True	AATAAA	-14	NA	42827011	42841355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947
ENSMUSG00000064194.11_42827012_42841355_2	chr7	+	2934	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	178	0	-178	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCACTCTTTATA	NA	False	NA	6	True	AATAAA	-14	NA	42827011	42841355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064194.11_42827012_42841355_3	chr7	+	2880	5	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	-178	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	176.4291642558	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCACTCTTTATA	NA	False	NA	6	True	AATAAA	-14	NA	42827011	42841355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838903_42838956
ENSMUSG00000064326.14_112611401_112615579_1	chr12	+	441	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	0	-108	0	0	multi-exon	FALSE	canonical	3	90	junction_1	805	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_112611519_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_2	chr12	+	636	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	288	0	0	0	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000065952.14_3617990_3623836_1	chr8	+	823	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	0	-186	0	186	multi-exon	FALSE	canonical	3	29	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617989	3623836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3618097_3623120
ENSMUSG00000065990.13_155916126_155917521_1	chr4	+	865	4	NIC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	1402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_155916126_155917521_2	chr4	+	896	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_155916126_155917521_3	chr4	+	775	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	318	66	0	3	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	1412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
ENSMUSG00000066000.13_147696394_147726988_1	chr4	-	2630	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.592058940367	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726988	147696393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725321_147725463_147726820
ENSMUSG00000066000.13_147696394_147726988_2	chr4	-	2596	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	178.0028089666	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726988	147696393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_147698506_147699736_147699877_147702873_147702956_147725368_147725463_147726820
ENSMUSG00000066009.9_146033868_146063194_1	chr4	+	2680	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033867	146063194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061347_146061514
ENSMUSG00000066042.5_132186042_132191232_1	chr4	-	1627	5	NNC	ENSMUSG00000066042.5	novel	1675	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.389673080969	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_132186178_132186201_132186367_132186390_132187425_132190175_132190320_132191084
ENSMUSG00000066148.4_62327034_62342711_1	chr4	+	2707	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	2516	0	1143	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGGAAAAAATCCTAA	NA	False	NA	30	True	ATTAAA	-18	NA	62327033	62342711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066148.4_62327034_62342839_1	chr4	+	2835	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	2388	0	1271	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTGAAAGGATTATTTT	NA	False	NA	9	True	AGTAAA	-16	NA	62327033	62342839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066149.12_62312042_62326862_1	chr4	-	1483	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	-829	0	778	multi-exon	FALSE	canonical	3	31	junction_2	175	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGACTCTTTATTATTG	2681	False	NA	NA	False	AATAAA	-22	NA	62326862	62312041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62313259_62320960_62321153_62326788
ENSMUSG00000066149.12_62312042_62326862_2	chr4	-	1580	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	17	-778	0	778	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGACTCTTTATTATTG	2681	False	NA	NA	False	AATAAA	-22	NA	62326862	62312041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUSG00000066150.13_62278964_62307758_1	chr4	+	1470	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	2248	0	-2248	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGTACCTTGGT	NA	False	NA	13	True	AATAAA	-16	NA	62278963	62307758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUSG00000066441.15_79221111_79238629_1	chr12	-	2824	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	438	0	-62	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATGGGGATATTGGA	NA	False	NA	-18	True	AATAAA	-40	NA	79238629	79221110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ENSMUSG00000066441.15_79222325_79238629_1	chr12	-	1610	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	438	1214	-62	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCTGTTTCTCAGCCTA	NA	False	NA	-3	True	AATAAA	-18	NA	79238629	79222324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ENSMUSG00000066442.18_89093453_89122279_1	chr9	+	729	3	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	155	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093452	89122279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_+_89093535_89097261_89097524_89121894
ENSMUSG00000066551.13_148984037_148989855_1	chr5	-	2318	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	-5	525	-5	-525	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	3588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6759	False	NA	-7	True	AATAAA	-24	NA	148989855	148984036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066551.13_148985038_148989855_1	chr5	-	1317	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	-5	1526	-5	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	3369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6759	False	NA	NA	False	AGTAAA	-18	NA	148989855	148985037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066551.13_148985455_148989855_1	chr5	-	900	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	-5	1943	-5	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAAGATTTGTT	6759	False	NA	NA	False	AAGAAA	-14	NA	148989855	148985454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066568.13_34044088_34053208_1	chr7	-	1876	5	ISM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	35904	17	-227	0	3prime_fragment	FALSE	canonical	3	572	junction_4	46.1573396113771	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATCCAAAGATTTCAATAT	NA	False	NA	-28	True	AATAAA	-16	NA	34053208	34044087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089
ENSMUSG00000066637.3_9080028_9086183_1	chr12	+	758	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	31	211	0	-211	multi-exon	FALSE	canonical	3	121	junction_2	13	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTATTCCCAACTTTG	NA	False	NA	17	True	AGTAAA	-19	NA	9080027	9086183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUSG00000066652.6_180720673_180726009_1	chr1	+	1814	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	659	0	-659	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATTCTGTGTGCTCTT	NA	False	NA	10	True	NA	NA	NA	180720672	180726009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUSG00000066652.6_180720673_180726982_1	chr1	+	2787	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	-314	0	314	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCAGTGTCTGTTTATT	NA	False	NA	24	True	NA	NA	NA	180720672	180726982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUSG00000066652.6_180722023_180726668_1	chr1	+	2038	2	FSM	ENSMUSG00000066652.6	ENSMUST00000155546.2	422	2	0	-1616	0	0	multi-exon	FALSE	canonical	3	1148	junction_1	0	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180722022	180726668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180722407_180725014
ENSMUSG00000066705.8_45281740_45307457_1	chr9	+	1532	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	257	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066861.15_121014785_121025653_1	chr5	-	1405	7	FSM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	-8	580	-8	0	multi-exon	FALSE	canonical	3	61	junction_5	116.597241248096	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025653	121014784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121024125_121025442
ENSMUSG00000066892.15_20549085_20553819_1	chr9	-	1803	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	283	0	-210	0	multi-exon	TRUE	canonical	3	69	junction_2	12	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20553819	20549084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20553499
ENSMUSG00000066979.7_131162109_131172906_1	chr7	+	1345	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	158	715	0	13	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTGTTTGTAAACATT	NA	False	NA	29	True	AATAAA	-24	NA	131162108	131172906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000066979.7_131162109_131173624_1	chr7	+	2063	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	158	-3	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	11	True	ATTAAA	-20	NA	131162108	131173624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000067150.7_46513743_46553218_1	chr17	+	3740	32	FSM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	35	1306	0	-1303	multi-exon	FALSE	canonical	0	0	junction_23	77.9414252168146	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGCCTCGGTTGTCATC	NA	False	NA	7	True	NA	NA	NA	46513742	46553218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546928_46547838_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
ENSMUSG00000067194.7_158155174_158168560_1	chrX	+	808	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	4364	0	-4364	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACGCTAAGTCCACTT	5347	False	NA	25	True	NA	NA	NA	158155173	158168560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067194.7_158155174_158168700_1	chrX	+	948	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	4224	0	-4224	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5347	False	NA	14	True	AATAAA	-26	NA	158155173	158168700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067274.11_115697596_115701574_1	chr5	+	1076	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	70	212	0	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	30111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067288.14_34042026_34043469_1	chr17	-	389	3	ISM	ENSMUSG00000067288.14	ENSMUST00000173019.8	437	4	-3	4025	-1	0	5prime_fragment	FALSE	canonical	3	16929	junction_2	2573.5	12104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_34042305_34043272_34043321_34043407
ENSMUSG00000067338.7_145561743_145567205_1	chr6	+	1515	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	260	0	260	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	1012	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145561742	145567205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
ENSMUSG00000067365.12_38417731_38426978_1	chr5	+	1089	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	202	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417730	38426978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
ENSMUSG00000067367.10_38377873_38391643_1	chr5	+	1595	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	1233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_38377873_38391643_2	chr5	+	1382	8	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	29	junction_2	791.240204504605	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_38377980_38381970_38382142_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067369.13_133163237_133177685_1	chrX	-	1751	4	NIC	ENSMUSG00000067369.13	novel	822	4	NA	NA	-9	0	intron_retention	FALSE	canonical	3	48	junction_1	4.32049379893857	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGCTGTCTCCGCATT	NA	False	NA	-7	True	AGTAAA	-14	NA	133177685	133163236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_133164611_133167009_133167065_133168079_133168311_133177594
ENSMUSG00000067562.12_101846569_101853556_1	chrX	+	1457	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101846568	101853556	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067567.13_101328245_101548752_1	chrX	-	1723	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	213	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548752	101328244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ENSMUSG00000067713.8_98710678_98729335_1	chr15	-	2128	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9416	False	NA	-4	True	ATTAAA	-22	NA	98729335	98710677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
ENSMUSG00000067722.5_25403528_25404510_1	chr17	+	904	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	2126	0	-2126	multi-exon	FALSE	canonical	3	314	junction_1	0	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATTTTCTCACCTCCCC	NA	False	NA	15	True	AATACA	-20	NA	25403527	25404510	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25403615_25403693
ENSMUSG00000067764.12_72326975_72336582_1	chrX	-	1084	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	0	-473	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336582	72326974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUSG00000067764.12_72326975_72336582_2	chrX	-	1106	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_8	149.667913645511	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336582	72326974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ENSMUSG00000067764.12_72326975_72336582_4	chrX	-	1183	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	473	0	-473	multi-exon	FALSE	canonical	3	126	junction_7	127.059963698248	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336582	72326974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUSG00000067768.13_72257939_72266059_1	chrX	+	1192	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257938	72266059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067847.14_155986153_155987717_1	chr2	+	375	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	194	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	118.5	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATTTTTACCTAGTA	6545	False	NA	17	True	AATAAA	-22	NA	155986152	155987717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155986201_155986378_155986510_155987521
ENSMUSG00000067873.12_56099258_56112543_1	chrX	+	2715	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	283	0	0	0	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56099257	56112543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ENSMUSG00000067916.10_147233134_147266219_1	chr4	+	3814	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1183	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	34.022051672408	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCCATCCGCTACGGC	2765	False	NA	NA	False	NA	NA	NA	147233133	147266219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067919.9_147106307_147141977_1	chr4	+	719	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	3274	0	-3274	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	2283	False	NA	NA	False	TATAAA	-21	NA	147106306	147141977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067995.5_76134810_76248349_1	chr14	-	1078	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	-44	433	-44	-433	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGATGTTATTTATAG	NA	False	NA	-4	True	CATAAA	-23	NA	76248349	76134809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
ENSMUSG00000068039.14_13135362_13143443_1	chr17	+	1842	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	93	511	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	7045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135361	13143443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068039.14_13135362_13143443_2	chr17	+	1756	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	146	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	6426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135361	13143443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068040.11_153003461_153050781_1	chr2	+	2053	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	238	1605	0	-1605	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGCACAGTGTTCCTA	NA	False	NA	23	True	AATAAA	-27	NA	153003460	153050781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068040.11_153003461_153052386_1	chr2	+	3658	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	238	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003460	153052386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068101.12_82118280_82128611_1	chr15	-	974	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	-381	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128611	82118279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
ENSMUSG00000068101.12_82118280_82128895_1	chr15	-	848	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	54	300	-21	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128895	82118279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUSG00000068184.8_108189123_108295018_1	chr13	-	507	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	163	junction_1	183.055319507519	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295018	108189122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_108189189_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295018_2	chr13	-	490	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	252.741345054583	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295018	108189122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_108189199_108189247_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_1	chr13	-	597	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	252.741345054583	291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_108189199_108189247_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_2	chr13	-	614	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	163	junction_1	183.055319507519	343	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_108189189_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068205.15_140237376_140262415_1	chr2	+	1072	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	21	2459	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237375	140262415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ENSMUSG00000068220.7_78810926_78814396_1	chr15	+	530	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	1	269	0	5	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	736	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCCTTTCATGGGAGA	NA	False	NA	14	True	AATAAA	-25	NA	78810925	78814396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
ENSMUSG00000068245.15_59586181_59607998_1	chr14	-	1201	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	114.002923939111	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_2	chr14	-	1261	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	109.915568045502	584	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_3	chr14	-	1333	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	568	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_4	chr14	-	1503	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	905	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_5	chr14	-	1129	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_6	chr14	-	1299	8	NNC	ENSMUSG00000068245.15	novel	1281	8	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	27	junction_1	121.308175608191	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068250.14_149059081_149090195_2	chr6	-	1006	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	15	436	-2	0	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
ENSMUSG00000068250.14_149059081_149090195_3	chr6	-	728	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
ENSMUSG00000068323.13_83254375_83280739_1	chr6	+	1901	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	40018	1187	0	281	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068323.13_83254375_83280739_2	chr6	+	1787	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	281	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068323.13_83254375_83280739_3	chr6	+	1985	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	281	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	136	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
ENSMUSG00000068323.13_83254375_83281143_2	chr6	+	2305	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	40018	783	0	685	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5726	False	NA	8	True	NA	NA	NA	83254374	83281143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068328.10_83031712_83034663_1	chr6	+	1364	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	317.12207936872	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_83031814_83031891_83032030_83032109_83032192_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068328.10_83031712_83034663_2	chr6	+	1433	12	FSM	ENSMUSG00000068328.11	ENSMUST00000092618.10	1769	12	210	126	0	0	multi-exon	FALSE	canonical	3	960	junction_10	78.8006166859286	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068328.10_83031712_83034663_3	chr6	+	1659	11	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	960	junction_9	76.9269783626005	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83028247_83031018_1	chr6	-	1191	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	534	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2431	False	NA	2	True	AATAAA	-31	NA	83031018	83028246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_1	chr6	-	1546	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	199.430578286168	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029981_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_2	chr6	-	1615	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	110	0	-19	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_4	chr6	-	1538	8	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	183.177063888179	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068417.9_51193617_51202210_1	chr14	+	1208	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	168	-4	-84	4	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	51193616	51202210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
ENSMUSG00000068479.6_121323807_121337146_1	chr2	-	2783	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	1415	0	-1415	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGCCACAAGTGTGGT	NA	False	NA	19	True	NA	NA	NA	121337146	121323806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
ENSMUSG00000068479.6_121324846_121337146_1	chr2	-	1744	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	2454	0	-2454	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGATGGTGTATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	121337146	121324845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
ENSMUSG00000068479.6_121325042_121337146_1	chr2	-	1548	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	2650	0	-2650	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTGAAGGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	121337146	121325041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
ENSMUSG00000068566.14_3339100_3347730_3	chr7	+	2607	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	271	False	NA	13	True	NA	NA	NA	3339099	3347730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_3339156_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068566.14_3339100_3347865_1	chr7	+	2742	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	271	False	NA	14	True	AATATA	-8	NA	3339099	3347865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_3339156_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068580.12_119039493_119047530_1	chr2	+	1630	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	378	0	0	0	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGATGTTTTTTCTGTC	289	False	NA	8	True	NA	NA	NA	119039492	119047530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
ENSMUSG00000068739.14_108333928_108352514_1	chr3	-	1823	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	1747	0	0	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	2539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352514	108333927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUSG00000068744.13_108291155_108295210_1	chr3	+	1401	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	285	0	-285	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATCTGTCTCCTTCCATC	7032	False	NA	19	True	AATAAA	-15	NA	108291154	108295210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_108291155_108295210_2	chr3	+	1370	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	-20	337	0	-285	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATCTGTCTCCTTCCATC	7032	False	NA	19	True	AATAAA	-15	NA	108291154	108295210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_108291155_108295495_1	chr3	+	1743	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	155	junction_1	118.602510747267	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_108291212_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_108291195_108295495_1	chr3	+	1734	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	329	junction_1	60.1405760605009	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7072	False	NA	16	True	AATAAA	-24	NA	108291194	108295495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_108291243_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068749.10_108164495_108187290_1	chr3	+	986	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	253	0	253	0	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	3169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164494	108187290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ENSMUSG00000068798.11_105635767_105708626_1	chr3	-	1197	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	26	1184	0	-137	multi-exon	FALSE	canonical	3	409	junction_7	23.7667234354495	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGGAAAAATGGGTCT	NA	False	NA	-2	True	ATTAAA	-16	NA	105708626	105635766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUSG00000068823.11_102927929_102964448_1	chr3	+	3077	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	187	1054	0	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	32	True	AATAAA	-28	NA	102927928	102964448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102927929_102964448_2	chr3	+	2984	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	6	859	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	32	True	AATAAA	-28	NA	102927928	102964448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102927929_102965123_1	chr3	+	3752	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	187	379	0	3	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927928	102965123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102927929_102965123_2	chr3	+	3659	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	6	184	0	3	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927928	102965123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102927929_102965502_2	chr3	+	4038	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	6	-195	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927928	102965502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068856.4_96079863_96084705_1	chr3	+	1525	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	215	175	0	-175	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTGGTGAAGTAACT	NA	False	NA	20	True	AATAAA	-16	NA	96079862	96084705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ENSMUSG00000068882.14_69691906_69701854_1	chr2	+	1752	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	336	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69691905	69701854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068882.14_69691906_69701854_2	chr2	+	1725	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	276	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69691905	69701854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068882.14_69691967_69701854_1	chr2	+	1664	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	61	276	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69691966	69701854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068921.15_88830942_88857258_1	chr3	-	1306	12	NIC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	248.823878102664	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88857258_2	chr3	-	1225	11	NIC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	267.054020752356	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88857258_3	chr3	-	1465	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	463	2832	0	0	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88857578_1	chr3	-	1537	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	242.200444994545	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857578	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
ENSMUSG00000068921.15_88830942_88858488_1	chr3	-	1422	13	NNC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_12	242.742948175408	235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858488	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858447
ENSMUSG00000068921.15_88830942_88858488_2	chr3	-	1602	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	0	-193	0	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858488	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
ENSMUSG00000068921.15_88830942_88858488_3	chr3	-	1694	13	NIC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	11	junction_12	245.456151322843	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858488	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858175
ENSMUSG00000069020.10_29717407_29734076_1	chr2	+	1290	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	34	-643	0	0	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTTACTAGCCTTGCT	NA	False	NA	14	True	AATAAA	-16	NA	29717406	29734076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
ENSMUSG00000069020.10_29717407_29734076_2	chr2	+	1205	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	53	938	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTTACTAGCCTTGCT	NA	False	NA	14	True	AATAAA	-16	NA	29717406	29734076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
ENSMUSG00000069041.9_40663285_40680024_1	chr3	+	1625	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	0	503	0	-503	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATGAGCCTTTTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	40663284	40680024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
ENSMUSG00000069089.9_100839818_100867413_1	chr13	-	1173	10	NIC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	235.310564421564	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867413	100839817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100866965_100867026_100867281
ENSMUSG00000069089.9_100839818_100867413_2	chr13	-	1275	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	34	679	-5	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867413	100839817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069520.7_115178309_115198129_1	chr10	-	1307	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	43	1662	0	1339	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198129	115178308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ENSMUSG00000069565.13_80100908_80123909_1	chr10	+	1658	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	90	333	0	182	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTACAATGTATACTGG	NA	False	NA	19	True	AATATA	-32	NA	80100907	80123909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUSG00000069631.15_106054156_106084362_1	chr11	-	2009	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	26	-518	0	0	multi-exon	TRUE	canonical	3	87	junction_9	16.6340013225922	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084362	106054155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
ENSMUSG00000069727.6_42309529_42342188_1	chr7	-	3067	3	NIC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	158	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342188	42309528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_42312421_42314181_42314243_42342074
ENSMUSG00000069833.14_8966648_9054278_1	chr19	+	1041	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	-11	-200	0	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966647	9054278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
ENSMUSG00000069844.13_66943496_66955728_1	chr11	+	1742	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	0	670	0	-429	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGACAAGCATGGCTTTG	NA	False	NA	9	True	AATAAA	-21	NA	66943495	66955728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
ENSMUSG00000070284.11_107926488_107928901_1	chr9	+	1556	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	47	1099	0	0	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926487	107928901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_107926488_107929116_1	chr9	+	1771	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	47	884	0	1	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGTCCTTGTTGTTCA	NA	False	NA	11	True	NA	NA	NA	107926487	107929116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_107926488_107929116_3	chr9	+	1680	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	-36	-215	0	1	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGTCCTTGTTGTTCA	NA	False	NA	11	True	NA	NA	NA	107926487	107929116	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070348.6_144484359_144493606_1	chr7	-	3049	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	691	0	-691	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTCCTGTTCACAATAC	NA	False	NA	59	True	NA	NA	NA	144493606	144484358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070348.6_144486050_144493606_1	chr7	-	1358	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	2382	0	885	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTAGTTTTCTATTAAT	NA	False	NA	-2	True	AATAGA	-18	NA	144493606	144486049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070348.6_144486217_144493606_1	chr7	-	1191	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	2549	0	718	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTGTTTTTCCTTAA	NA	False	NA	-4	True	NA	NA	NA	144493606	144486216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070394.11_69729381_69730441_1	chr11	+	407	4	NNC	ENSMUSG00000070394.11	novel	492	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	694.908307300723	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGTGTCTTTATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	69729380	69730441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_69729425_69729745_69729778_69730013_69730095_69730191
ENSMUSG00000070425.14_101714718_101731829_1	chr7	+	2086	11	FSM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	-247	459	0	31	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGTGAATGAGTCTTGA	NA	False	NA	4	True	TATAAA	-18	NA	101714717	101731829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000070426.13_101669339_101714341_1	chr7	-	1230	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	24	995	-17	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAATTGTCCCCCATTC	NA	False	NA	-2	True	AATATA	-24	NA	101714341	101669338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUSG00000070436.13_98994597_99002321_1	chr7	-	2089	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	125	1	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTTCTAAGACAAA	NA	False	NA	89	True	ATTAAA	-16	NA	99002321	98994596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ENSMUSG00000070493.4_129909997_129916130_1	chr5	-	734	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	0	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	8354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ENSMUSG00000070605.5_146500228_146550672_1	chr4	+	898	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	279.837810168676	530	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500544_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_10	chr4	+	961	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	259.684049482358	797	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_11	chr4	+	790	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.355308018716	646	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_12	chr4	+	658	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	321.524785203256	89	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_13	chr4	+	813	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.877846290417	519	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_2	chr4	+	915	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	295.700794723315	406	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_3	chr4	+	984	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	258.749557165483	773	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_4	chr4	+	744	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	293.616348318686	176	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_5	chr4	+	704	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	732	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_6	chr4	+	942	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	286.590020761366	394	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500588_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_7	chr4	+	919	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	287.112800132631	568	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500588_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_8	chr4	+	727	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	275.60595058888	590	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500373_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_9	chr4	+	875	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	278.693810480247	579	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_1	chr4	+	611	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	1200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_2	chr4	+	655	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	318.789115247055	1060	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146517030_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_3	chr4	+	599	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	300.104148588453	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146516986_146533486_146533533_146547961_146548026_146548878_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_4	chr4	+	634	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	1147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_5	chr4	+	565	4	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	367.768949205884	108	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146516986_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_6	chr4	+	704	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	304.163114134505	846	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146516986_146518646_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070837.6_6998502_7006090_1	chr7	+	1198	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	203	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070953.14_34669229_34689630_1	chr2	-	1341	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	110	-20	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	2931	False	NA	-22	True	AATAAA	-17	NA	34689630	34669228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ENSMUSG00000070953.14_34669229_34689785_1	chr2	-	1168	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	139	1661	-19	0	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	2776	False	NA	-22	True	AATAAA	-17	NA	34689785	34669228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
ENSMUSG00000071014.11_40270665_40279178_1	chr4	-	342	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	243	74	231	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	233	False	NA	-11	True	AATAAA	-17	NA	40279178	40270664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUSG00000071072.13_127894823_127912862_1	chr10	+	1721	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	279	0	15	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	846	False	NA	14	True	AATAAA	-15	NA	127894822	127912862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071072.13_127894880_127912862_1	chr10	+	1664	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	57	279	0	15	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	1237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	903	False	NA	14	True	AATAAA	-15	NA	127894879	127912862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071072.13_127894880_127913141_1	chr10	+	1943	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	57	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	903	False	NA	39	True	AATAAA	-40	NA	127894879	127913141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071074.10_46559051_46562943_1	chr17	+	1501	9	NNC	ENSMUSG00000071074.10	novel	2035	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	55.4209741433692	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2625	False	NA	23	True	ATTAAA	-18	NA	46559050	46562943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562258_46562414_46562491
ENSMUSG00000071074.10_46559051_46562943_2	chr17	+	1470	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	45	520	0	0	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2625	False	NA	23	True	ATTAAA	-18	NA	46559050	46562943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
ENSMUSG00000071078.7_70583997_70586402_1	chr8	+	1243	4	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_3	279.964680312039	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	461	False	NA	22	True	NA	NA	NA	70583996	70586402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_70584250_70584567_70584659_70585061_70585301_70585742
ENSMUSG00000071078.7_70585243_70586402_1	chr8	+	721	2	NNC	ENSMUSG00000071078.7	novel	1507	3	NA	NA	1246	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	1707	False	NA	22	True	NA	NA	NA	70585242	70586402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_70585310_70585748
ENSMUSG00000071172.14_29251647_29261084_1	chr17	+	1766	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	41	787	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGCCTGTTTTTCCTTG	NA	False	NA	37	True	ATTAAA	-28	NA	29251646	29261084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261084_2	chr17	+	1310	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1263	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	5765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGCCTGTTTTTCCTTG	NA	False	NA	37	True	ATTAAA	-28	NA	29251646	29261084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261225_1	chr17	+	1451	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1122	0	8	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	7114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTCGAGCGAACCACTG	NA	False	NA	23	True	AATAAA	-23	NA	29251646	29261225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261871_1	chr17	+	2097	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	476	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	8862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251646	29261871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071180.6_108181023_108185706_1	chr13	+	2022	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	3	-933	0	0	multi-exon	FALSE	canonical	3	16	junction_1	87.5	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108181168_108182958_108183103_108183973
ENSMUSG00000071266.14_22643203_22673662_1	chr17	+	955	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	-37	2008	0	-1157	multi-exon	FALSE	canonical	3	27	junction_4	20.6881608655772	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTGTGTGTTCTATC	NA	False	NA	NA	False	TATAAA	-14	NA	22643202	22673662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
ENSMUSG00000071337.12_86381286_86407754_1	chr6	+	1759	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	85	2633	0	0	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAACTTGTGCAAAGTC	9766	False	NA	NA	False	AATATA	-22	NA	86381285	86407754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071337.12_86381286_86407754_2	chr6	+	1726	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	-9	1413	0	0	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAACTTGTGCAAAGTC	9766	False	NA	NA	False	AATATA	-22	NA	86381285	86407754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071359.14_22579778_22607260_1	chr10	-	2787	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	86	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22607260	22579777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
ENSMUSG00000071415.7_97668864_97673210_1	chr11	-	495	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	53	511	-2	0	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	17877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673210	97668863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
ENSMUSG00000071415.7_97668864_97673210_2	chr11	-	463	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	613	junction_3	5440.57875482931	11174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673210	97668863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_97668991_97669090_97669205_97672159_97672257_97672631_97672716_97673169
ENSMUSG00000071470.5_51026705_51033185_1	chr14	-	1579	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
ENSMUSG00000071533.12_55835869_55850041_1	chr16	-	2433	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	-2	-1493	-2	0	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850041	55835868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
ENSMUSG00000071533.12_55837362_55850041_1	chr16	-	741	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	61	1493	-2	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850041	55837361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUSG00000071533.12_55838649_55850041_1	chr16	-	608	4	FSM	ENSMUSG00000071533.12	ENSMUST00000122253.2	792	4	18	166	-2	-166	multi-exon	FALSE	canonical	3	1778	junction_3	312.848206004126	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTACACACGTGCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	55850041	55838648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUSG00000071632.11_18655331_18658910_1	chr16	+	1220	5	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.1996413925642	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_18655370_18655455_18655624_18657839_18658616_18658644_18658665_18658693
ENSMUSG00000071632.11_18655331_18658910_3	chr16	+	1306	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	83.4386001800126	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_18655624_18657839_18658616_18658644_18658665_18658693
ENSMUSG00000071644.11_8944405_8955546_1	chr19	+	1567	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	297	0	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	22462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	843	False	NA	13	True	ATTAAA	-18	NA	8944404	8955546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_1	chr19	+	1413	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	154	297	154	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	22420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071653.10_8866279_8868110_1	chr19	+	609	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	62	135	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866278	8868110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ENSMUSG00000071653.10_8866279_8868110_2	chr19	+	700	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	-200	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866278	8868110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
ENSMUSG00000071654.7_8857634_8858287_1	chr19	-	565	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	256	0	-256	multi-exon	FALSE	canonical	3	500	junction_1	0	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTCGCAGCTGGACA	NA	False	NA	-11	True	AATAAA	-18	NA	8858287	8857633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8857981_8858069
ENSMUSG00000071655.13_8848923_8853028_1	chr19	+	1143	9	NIC	ENSMUSG00000071655.13	novel	1033	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	339	junction_1	343.320345122453	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_+_8848950_8849034_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_8848923_8853028_2	chr19	+	1228	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	-101	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071657.13_8816754_8826031_1	chr19	+	1734	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	62	-1	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8816753	8826031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071658.6_8815093_8816574_1	chr19	-	863	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	-16	796	-16	-796	multi-exon	TRUE	canonical	3	189	junction_2	8	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCGTTAGACATTGTAAG	4746	False	NA	77	True	NA	NA	NA	8816574	8815092	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8815636_8815917_8816018_8816354
ENSMUSG00000071660.11_8788660_8796658_1	chr19	-	1249	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	39	2221	0	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGTGTGGTGGCGCAC	1924	False	NA	NA	False	ATTAAA	-12	NA	8796658	8788659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
ENSMUSG00000071662.5_8770491_8775941_1	chr19	-	730	7	NIC	ENSMUSG00000071662.5	novel	890	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	548.478324295703	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8775587_8775698_8775822
ENSMUSG00000071708.12_156226851_156275042_1	chrX	-	3476	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	241	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCCGTCTCCATTATGC	NA	False	NA	-4	True	AATAAA	-11	NA	156275042	156226850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071708.12_156228692_156275042_1	chrX	-	1635	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	241	1841	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275042	156228691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071773.5_36477457_36481929_1	chrX	-	751	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3982	0	3982	0	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36481929	36477456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
ENSMUSG00000071793.13_20016466_20042225_1	chr8	+	1262	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	0	-3663	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	224	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016465	20042225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016466_20042287_1	chr8	+	1491	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	13211	0	-3601	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	270	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTCCTGTCTCAGTGTT	NA	False	NA	NA	False	CATAAA	-18	NA	20016465	20042287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20042010_1	chr8	+	942	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-3878	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016570	20042010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20042225_1	chr8	+	1324	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	105	13273	105	-3663	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016570	20042225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20043149_1	chr8	+	2081	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-2739	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	295	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016570	20043149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20043149_2	chr8	+	1905	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-2739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	519.250844968017	216	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016570	20043149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091
ENSMUSG00000071866.13_6365868_6369812_1	chr11	+	740	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	425	5	0	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	5814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	NA	False	NA	-3	True	AATAAA	-14	NA	6365867	6369812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUSG00000072082.8_24442204_24470302_2	chr17	-	3020	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	81	1032	-10	-1032	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	-4	True	AATAAA	-19	NA	24470302	24442203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ENSMUSG00000072082.8_24442301_24470383_1	chr17	-	3004	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	0	1129	0	-1129	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTGTCTTTATTT	8675	False	NA	-13	True	NA	NA	NA	24470383	24442300	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ENSMUSG00000072235.7_98847718_98851432_1	chr15	-	1651	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	152	0	152	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851432	98847717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUSG00000072244.12_103868044_103884111_1	chr7	+	3491	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	0	-248	intron_retention	TRUE	canonical	0	0	junction_8	239.859203492382	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868043	103884111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ENSMUSG00000072258.12_183170325_183190194_2	chr1	+	1558	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	826	0	-826	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170324	183190194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072419.6_48130840_48139542_1	chr16	+	1334	8	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-544	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	201.815231722242	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATGGCTTTATCATGTA	NA	False	NA	NA	False	AATATA	-14	NA	48130839	48139542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
ENSMUSG00000072419.6_48130840_48139542_2	chr16	+	1404	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	544	0	-544	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATGGCTTTATCATGTA	NA	False	NA	NA	False	AATATA	-14	NA	48130839	48139542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072419.6_48130840_48139794_1	chr16	+	1586	8	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	201.815231722242	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTCCTCGATTGATTT	NA	False	NA	-64	True	NA	NA	NA	48130839	48139794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
ENSMUSG00000072419.6_48130840_48139922_1	chr16	+	1784	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	164	0	-164	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGTCTTGAGTATTT	NA	False	NA	64	True	NA	NA	NA	48130839	48139922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072419.6_48130840_48139922_2	chr16	+	1714	8	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	201.815231722242	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGTCTTGAGTATTT	NA	False	NA	64	True	NA	NA	NA	48130839	48139922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
ENSMUSG00000072479.11_72192402_72202005_1	chrX	+	1080	8	NIC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	combination_of_known_splicesites	FALSE	canonical	3	121	junction_7	152.49623615295	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_2	chrX	+	1003	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	175.455093388361	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_3	chrX	+	1102	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	at_least_one_novel_splicesite	TRUE	canonical	3	104	junction_1	165.884749148317	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_4	chrX	+	1179	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	473	0	306	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUSG00000072572.10_52131067_52133265_1	chr14	+	1397	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	0	937	0	2	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTGCAATTCTGCCTC	NA	False	NA	16	True	AATAAA	-27	NA	52131066	52133265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
ENSMUSG00000072582.10_86574811_86581016_1	chr11	+	865	3	FSM	ENSMUSG00000072582.10	ENSMUST00000108021.2	3132	3	0	2267	0	-2267	multi-exon	FALSE	non_canonical	0	0	junction_2	3	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTCCCATGTTCCTCT	NA	False	NA	19	True	AATAAA	-26	NA	86574810	86581016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_86574950_86578861_86578956_86580384
ENSMUSG00000072582.10_86574811_86581016_2	chr11	+	771	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	0	2267	0	-2267	multi-exon	FALSE	canonical	3	249	junction_1	0	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTCCCATGTTCCTCT	NA	False	NA	19	True	AATAAA	-26	NA	86574810	86581016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_86574950_86580384
ENSMUSG00000072640.12_78717430_78730101_1	chr11	+	420	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	20	7595	0	0	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGAGGTGGTTCTCGT	NA	False	NA	20	True	AAGAAA	-13	NA	78717429	78730101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
ENSMUSG00000072676.13_25924421_25928067_1	chr14	-	1421	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	29	697	0	173	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCACATGCATCTGAGTT	NA	False	NA	-5	True	AGTAAA	-18	NA	25928067	25924420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ENSMUSG00000072694.9_114960374_114961510_1	chr5	-	550	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	-4	-126	-4	126	multi-exon	FALSE	canonical	3	282	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCCACCCACCTGCTTT	9612	False	NA	-17	True	NA	NA	NA	114961510	114960373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114960787_114961373
ENSMUSG00000072761.11_17514705_17539892_1	chr17	+	2052	4	FSM	ENSMUSG00000072761.11	ENSMUST00000186431.7	526	4	0	-1526	0	119	multi-exon	FALSE	canonical	3	37	junction_1	17.5689119374726	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17514704	17539892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17514852_17536339_17536467_17536705_17536767_17538175
ENSMUSG00000072762.10_109883381_109899559_1	chr5	-	2572	4	FSM	ENSMUSG00000072762.10	ENSMUST00000112547.8	2001	4	-96	-475	-96	475	multi-exon	FALSE	canonical	3	85	junction_1	29.0631496343164	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7850	False	NA	NA	False	NA	NA	NA	109899559	109883380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_109885666_109886815_109886877_109887064_109887192_109899460
ENSMUSG00000072762.10_109886697_109899559_1	chr5	-	406	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	193	0	-96	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7850	False	NA	NA	False	NA	NA	NA	109899559	109886696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_109886877_109887064_109887192_109899460
ENSMUSG00000072763.3_109822411_109838711_1	chr5	-	3145	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	196	0	196	0	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6327	False	NA	-3	True	NA	NA	NA	109838711	109822410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUSG00000072763.3_109826237_109838711_1	chr5	-	441	3	ISM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	196	3826	196	-3826	5prime_fragment	FALSE	canonical	3	55	junction_1	18.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAATGTCAGGTGTCT	6327	False	NA	NA	False	NA	NA	NA	109838711	109826236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr5_-_109826441_109826628_109826756_109838601
ENSMUSG00000072770.10_125026910_125031157_1	chr6	+	1240	5	FSM	ENSMUSG00000072770.10	ENSMUST00000112414.8	1498	5	258	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	12.3490890352285	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTGTCGTTGTTCTTT	NA	False	NA	17	True	ACTAAA	-24	NA	125026909	125031157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452
ENSMUSG00000072772.4_124716149_124718028_1	chr6	-	551	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	309	3	0	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9252	False	NA	NA	False	AATAAA	-14	NA	124718028	124716148	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124716377_124717481_124717659_124717882
ENSMUSG00000072919.5_87268029_87271891_1	chr12	-	644	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8439	0	at_least_one_novel_splicesite	TRUE	canonical	3	41	junction_2	1.69967317119759	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGAGCCATGAGTTCTGC	NA	False	NA	-70	True	NA	NA	NA	87271891	87268028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
ENSMUSG00000072944.12_138907554_138963081_1	chrX	-	1925	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963081	138907553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
ENSMUSG00000072944.12_138907554_138963346_1	chrX	-	1744	8	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_3	199.257704124737	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963346	138907553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
ENSMUSG00000072944.12_138907554_138963346_2	chrX	-	1879	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963346	138907553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
ENSMUSG00000072944.12_138907554_138963461_1	chrX	-	1994	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963461	138907553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
ENSMUSG00000072946.13_84332139_84360879_1	chr12	+	1308	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	133	1727	0	3	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGATTCTAGTGTGAT	NA	False	NA	31	True	TTTAAA	-22	NA	84332138	84360879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072946.13_84332139_84362606_1	chr12	+	3035	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	133	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGACCACTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	84332138	84362606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072980.4_119439993_119448950_1	chr2	-	1541	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	-459	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUSG00000072980.4_119439993_119448950_2	chr2	-	1418	5	NIC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_3	272.52247613729	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
ENSMUSG00000073079.7_55127311_55160065_1	chr12	+	2147	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	264	2087	0	389	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2840	False	NA	NA	False	AATAAA	-20	NA	55127310	55160065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ENSMUSG00000073125.11_72235813_72245868_1	chrX	+	921	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	-15	658	0	-658	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTGCAAATATGTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72245868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_72235813_72246536_1	chrX	+	2404	8	NIC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	856	junction_4	287.08421576042	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_72235813_72246536_2	chrX	+	1490	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_6	505.773079713883	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72245455_72245552_72245645
ENSMUSG00000073131.13_70860419_70864664_1	chrX	+	492	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	3648	0	74	multi-exon	FALSE	canonical	3	286	junction_1	56.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCTTAAAGAGTCAGTC	NA	False	NA	27	True	AATAAA	-39	NA	70860418	70864664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073131.13_70860419_70866035_1	chrX	+	1863	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	2277	0	1445	multi-exon	FALSE	canonical	3	286	junction_1	56.5	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCTATTATTGATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70860418	70866035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073131.13_70860419_70866580_1	chrX	+	2408	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	1732	0	-1732	multi-exon	FALSE	canonical	3	286	junction_1	56.5	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCACACTGGTATTTAGA	NA	False	NA	NA	False	AATAAA	-25	NA	70860418	70866580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073139.10_69503359_69520759_1	chrX	-	2486	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	27	-1206	-11	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520759	69503358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
ENSMUSG00000073155.13_35229651_35238957_1	chr6	+	985	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	62	1474	0	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTGGTAAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	35229650	35238957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUSG00000073155.13_35229667_35238574_1	chr6	+	586	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	78	1857	0	2	multi-exon	FALSE	canonical	3	978	junction_2	33.5	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGGTGAATTAATCCA	NA	False	NA	15	True	ATTAAA	-19	NA	35229666	35238574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUSG00000073207.2_51881947_51888351_1	chrX	+	1516	2	NNC	ENSMUSG00000073207.2	novel	1536	2	NA	NA	1870	6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCTGTGATTCTTGAAA	NA	False	NA	NA	False	AATAAA	-29	NA	51881946	51888351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_51882047_51886935
ENSMUSG00000073411.13_35482072_35486332_1	chr17	+	1593	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	366	143	0	3	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAAGTGACCTTGATTG	2085	False	NA	NA	False	NA	NA	NA	35482071	35486332	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073460.6_13107616_13128833_1	chr17	-	1808	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	284	0	0	0	multi-exon	TRUE	canonical	3	109	junction_10	13.5984067694222	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2974	False	NA	-8	True	GATAAA	-20	NA	13128833	13107615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUSG00000073481.10_184545889_184577858_1	chr1	-	1073	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	220	624	-90	0	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184577858	184545888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
ENSMUSG00000073538.11_153281993_153283536_1	chr1	-	544	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	1420	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGGGGTGTGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	153283536	153281992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_153282348_153283347
ENSMUSG00000073616.11_92564867_92569670_1	chr1	-	328	2	NIC	ENSMUSG00000073616.11	novel	438	3	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569670	92564866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_-_92565126_92569601
ENSMUSG00000073639.7_6765203_6789741_1	chr18	+	1769	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4688	0	501	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTTCTAACTCCTTG	7	True	NA	19	True	AATAAA	-15	NA	6765202	6789741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073639.7_6765203_6789951_1	chr18	+	1979	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4478	0	711	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTTACTGGGTTTA	7	True	NA	11	True	GATAAA	-21	NA	6765202	6789951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073639.7_6765203_6790183_1	chr18	+	2211	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4246	0	943	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTGTCTTGTCTGTC	7	True	NA	19	True	ATTAAA	-16	NA	6765202	6790183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073643.12_79681729_79739456_1	chr1	-	2771	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	30	1750	-1	1345	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAGGCA	NA	False	NA	NA	False	NA	NA	NA	79739456	79681728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUSG00000073643.12_79683074_79739456_1	chr1	-	1426	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	30	3095	-1	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTGGGGGTATTTG	NA	False	NA	-31	True	TATAAA	-1	NA	79739456	79683073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUSG00000073676.5_55127473_55130466_1	chr1	+	592	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	182	0	0	0	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	9593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127472	55130466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
ENSMUSG00000073702.12_39406923_39410447_1	chr1	+	532	5	NNC	ENSMUSG00000073702.12	novel	1049	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	5036.24277115391	15368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406922	39410447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_39407016_39407201_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_39406923_39410447_2	chr1	+	504	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	545	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	17418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406922	39410447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_39407010_39410447_1	chr1	+	445	5	NNC	ENSMUSG00000073702.12	novel	630	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	5036.24277115391	1800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407009	39410447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_39407016_39407201_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_39407010_39410447_2	chr1	+	494	5	NNC	ENSMUSG00000073702.12	novel	487	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	5012.72253246676	2350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407009	39410447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_+_39407093_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_39407010_39410574_1	chr1	+	544	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	87	418	0	127	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	12998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCACAGAAGTCACTTT	NA	False	NA	20	True	NA	NA	NA	39407009	39410574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073705.11_149212887_149222039_1	chr4	-	831	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	47	232	-5	110	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTGCTGTGGCTTCA	NA	False	NA	-34	True	AATAAA	-19	NA	149222039	149212886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ENSMUSG00000073705.11_149212887_149222039_2	chr4	-	812	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	-13	-110	-5	110	multi-exon	FALSE	canonical	3	47	junction_3	159.066809863026	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTGCTGTGGCTTCA	NA	False	NA	-34	True	AATAAA	-19	NA	149222039	149212886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
ENSMUSG00000073725.9_24717711_24802113_1	chr1	+	2037	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	0	2416	0	639	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCCTTTGTTGCTTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	24717710	24802113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUSG00000073725.9_24717820_24802113_1	chr1	+	1928	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	109	2416	0	639	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCCTTTGTTGCTTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	24717819	24802113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUSG00000073771.12_116977074_116978500_1	chr4	-	1091	2	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1027	658	-38	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGAATATTTGTATTC	NA	False	NA	-24	True	NA	NA	NA	116978500	116977073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_116978059_116978394
ENSMUSG00000073987.5_20042052_20066109_1	chr4	+	1324	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	641	0	-641	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTCTGTGATTATTG	-25	True	NA	NA	False	AATACA	-15	NA	20042051	20066109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUSG00000074088.7_130253987_130283711_1	chr4	+	1414	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	62	108	0	-108	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCTGTTTTATTTT	NA	False	NA	8	True	ATTAAA	-15	NA	130253986	130283711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ENSMUSG00000074093.5_51649360_51655597_1	chr7	-	443	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	169	2441	-1	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATATTGGTAATATT	NA	False	NA	NA	False	AATATA	-9	NA	51655597	51649359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
ENSMUSG00000074129.15_44775347_44778160_1	chr7	-	657	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	365	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	22209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44778160	44775346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUSG00000074170.6_37920097_37927440_1	chr7	-	1562	2	FSM	ENSMUSG00000074170.6	ENSMUST00000098513.6	5263	2	0	3701	0	-3701	multi-exon	FALSE	canonical	3	140	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTTGATTGTTAAGAGT	NA	False	NA	-20	True	NA	NA	NA	37927440	37920096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_37921583_37927364
ENSMUSG00000074182.9_145281987_145309873_1	chr3	+	1662	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	0	677	0	5	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_2	chr3	+	1219	11	NNC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	234.474071061173	246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_145282163_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_3	chr3	+	1230	11	NIC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_4	chr3	+	1171	11	NIC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	233.890765102002	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_5	chr3	+	1096	11	NIC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	233.599143834047	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_+_145282040_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074227.13_28955766_28981081_1	chr7	-	957	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	254	0	254	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	723	False	NA	-16	True	AATAAA	-21	NA	28981081	28955765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981081_2	chr7	-	872	6	NNC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	254	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	491.498931840141	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	723	False	NA	-16	True	AATAAA	-21	NA	28981081	28955765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr7_-_28956178_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981081_3	chr7	-	1128	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	256	0	254	0	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	723	False	NA	-16	True	AATAAA	-21	NA	28981081	28955765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
ENSMUSG00000074269.11_58560164_58648842_1	chr9	-	823	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	297.891658157794	362	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9050	False	NA	-8	True	AATAAA	-15	NA	58648842	58560163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_58560390_58565039_58565127_58567491_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000074269.11_58560164_58648842_2	chr9	-	774	5	NIC	ENSMUSG00000074269.11	novel	883	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	258.205828749081	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9050	False	NA	-8	True	AATAAA	-15	NA	58648842	58560163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_58560390_58565039_58565127_58567456_58567655_58619298_58619389_58648669
ENSMUSG00000074358.10_18624809_18644314_1	chr7	-	1983	14	NIC	ENSMUSG00000074358.10	novel	1961	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2786	False	NA	-2	True	AATAAA	-17	NA	18644314	18624808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUSG00000074365.14_15630096_15633193_1	chr7	+	1060	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	1030	0	651	multi-exon	FALSE	canonical	3	257	junction_2	3	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTGTGGAAGCTGGC	NA	False	NA	NA	False	AAAAAG	-24	NA	15630095	15633193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15630183_15631328_15631478_15632369
ENSMUSG00000074476.7_21620371_21671584_1	chr9	-	1208	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-6	46367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1064.06755424644	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCTGGAGAGATGGTTC	NA	False	NA	NA	False	NA	NA	NA	21671584	21620370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_21620570_21667084_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21666933_21671578_2	chr9	-	1022	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	-195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1095.95221154939	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAACAAACAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	21671578	21666932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671547
ENSMUSG00000074476.7_21667400_21671578_2	chr9	-	670	4	NNC	ENSMUSG00000074476.7	novel	627	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	903.617298540827	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_21667592_21668526_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21667400_21671578_3	chr9	-	683	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	21	662	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ENSMUSG00000074489.10_88275929_88280050_1	chr3	-	699	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
ENSMUSG00000074513.10_84403400_84489995_1	chr3	-	2953	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-154	0	-63	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489995	84403399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
ENSMUSG00000074521.10_177538889_177546623_1	chr2	+	497	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	954	0	147	multi-exon	FALSE	canonical	3	28	junction_2	14.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177538888	177546623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074521.10_177538889_177547420_1	chr2	+	1294	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	157	0	-157	multi-exon	FALSE	canonical	3	28	junction_2	14.5	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTTCTCATTTCATGTA	NA	False	NA	NA	False	NA	NA	NA	177538888	177547420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074578.15_166905143_166907782_1	chr2	+	665	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	-140	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	2126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_2	chr2	+	449	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	289	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	47.5105251496971	4360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_3	chr2	+	871	3	ISM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	2	0	0	0	intron_retention	FALSE	canonical	3	874	junction_1	67	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_166905218_166905555_166905648_166907078
ENSMUSG00000074637.8_34704679_34706610_1	chr3	+	1898	2	Genic_Genomic	ENSMUSG00000074637.8	novel	2057	1	NA	NA	125	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4732	False	NA	19	True	AATAAA	-24	NA	34704678	34706610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chr3_+_34705631_34705664
ENSMUSG00000074653.11_30733058_30754014_1	chr3	-	1770	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	-35	-149	-22	149	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGCTCATGATACCTTT	NA	False	NA	-5	True	NA	NA	NA	30754014	30733057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
ENSMUSG00000074656.13_154713338_154734751_1	chr2	-	2430	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	104	8	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	6173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3736	False	NA	-16	True	AATAAA	-24	NA	154734751	154713337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_154713338_154734751_2	chr2	-	2366	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4169.46393510879	6218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3736	False	NA	-16	True	AATAAA	-24	NA	154734751	154713337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_154714096_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_154714274_154734855_1	chr2	-	1598	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	944	0	-936	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	6202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATTCCTGGGCTGTGGC	3632	False	NA	58	True	AATAAA	-37	NA	154734855	154714273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_154714355_154734751_1	chr2	-	1413	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	104	1025	0	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	4352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3736	False	NA	-23	True	ATTAAA	-17	NA	154734751	154714354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074698.11_152068796_152121170_1	chr2	+	1567	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	37	2602	0	-2602	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTCTTTCTTTCTTT	NA	False	NA	7	True	CATAAA	-18	NA	152068795	152121170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUSG00000074698.11_152068796_152122260_1	chr2	+	2657	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	37	1512	0	-1512	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAGATTTAAGTTCCCTG	NA	False	NA	0	True	AATAAA	-21	NA	152068795	152122260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUSG00000074781.6_95351007_95378296_1	chr10	+	644	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	3223	0	99	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGTGATTACATGCAC	NA	False	NA	NA	False	AATAAA	-17	NA	95351006	95378296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074781.6_95351007_95378869_1	chr10	+	1217	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	2650	0	1	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCTTTGTACAGTTTA	NA	False	NA	NA	False	AGTAAA	-19	NA	95351006	95378869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074781.6_95351007_95379147_1	chr10	+	1495	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	2372	0	279	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTGATCCTTGGTGTCC	NA	False	NA	5	True	AATAAA	-16	NA	95351006	95379147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074797.12_130509746_130523534_1	chr2	+	1174	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	216	0	0	0	multi-exon	TRUE	canonical	3	338	junction_5	87.1842992792643	625	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5451	False	NA	18	True	AATAAA	-18	NA	130509745	130523534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
ENSMUSG00000074830.5_66816683_66828877_1	chr13	-	465	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7484	1309	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	85.7956227839678	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66828877	66816682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66816852_66821007_66821069_66821267_66821395_66828769
ENSMUSG00000074830.5_66820742_66828877_1	chr13	-	562	3	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7484	-1907	at_least_one_novel_splicesite	FALSE	canonical	3	156	junction_2	39	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	66828877	66820741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66821069_66821267_66821395_66828769
ENSMUSG00000074832.12_66476018_66589186_1	chr13	-	651	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	22960	multi-exon	FALSE	canonical	1	1	junction_1	77.2075125878305	223	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGAGTGGTTGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	66589186	66476017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr13_-_66476232_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66518841_66589186_1	chr13	-	548	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	-19628	multi-exon	FALSE	canonical	3	33	junction_1	68.0661443009665	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66589186	66518840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr13_-_66518952_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577779_66589186_1	chr13	-	586	4	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-7	172	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	71.3411210702184	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589186	66577778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66578071_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577779_66589186_2	chr13	-	2806	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-47	-172	-7	172	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589186	66577778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074863.6_62819598_62832759_1	chr13	-	2467	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	-27	-1825	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
ENSMUSG00000074865.12_62664611_62706426_1	chr13	-	2248	4	FSM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	-101	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	18.9267594221045	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62706426	62664610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62706300
ENSMUSG00000074884.13_121279676_121281535_1	chr2	+	690	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	0	2366	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	722	4066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279675	121281535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUSG00000074884.13_121279849_121281535_1	chr2	+	517	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	173	2366	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	722	4035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUSG00000074884.13_121279849_121281535_2	chr2	+	1154	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	0	1951	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121279923_121280455
ENSMUSG00000074884.13_121279849_121283490_1	chr2	+	2472	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	173	411	0	4	multi-exon	FALSE	canonical	3	5931	junction_1	722	4230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGCATTCTGGGTAGAA	NA	False	NA	7	True	NA	NA	NA	121279848	121283490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUSG00000074887.5_42863463_42875622_2	chr7	+	784	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	644	0	-135	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTTGTCTCCGAAAACA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875622	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_42863463_42876713_2	chr7	+	1875	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	-447	0	447	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGACACTCTTTGTA	9998	False	NA	12	True	AATAAA	-14	NA	42863462	42876713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_42863463_42876713_3	chr7	+	1939	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	0	-447	0	447	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGACACTCTTTGTA	9998	False	NA	12	True	AATAAA	-14	NA	42863462	42876713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000075054.6_18162785_18167934_1	chr13	-	1874	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	6870	0	635	multi-exon	FALSE	canonical	3	467	junction_2	27.5	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTCTACATTGTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	18167934	18162784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_18164368_18166212_18166335_18167765
ENSMUSG00000075054.6_18163420_18167934_1	chr13	-	1239	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	7505	0	0	multi-exon	FALSE	canonical	3	467	junction_2	27.5	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTGTGCTAAACTGTAA	NA	False	NA	NA	False	ATTAAA	-38	NA	18167934	18163419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_18164368_18166212_18166335_18167765
ENSMUSG00000075229.12_35892454_35912481_1	chr16	+	665	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	399	9	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	1282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_2	chr16	+	539	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	4	-152	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075232.7_40164770_40178182_1	chr10	-	1888	8	FSM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	0	1316	0	550	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGTCTTTGTAAGAAAA	NA	False	NA	2	True	ATTAAA	-16	NA	40178182	40164769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUSG00000075266.6_30073094_30076556_1	chr10	-	443	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	1089	0	-1089	multi-exon	FALSE	canonical	3	2101	junction_1	71	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAATGGCTTCTGAGT	NA	False	NA	-7	True	ATTAAA	-22	NA	30076556	30073093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_30073223_30074461_30074576_30076356
ENSMUSG00000075394.5_102943090_102945278_1	chr15	+	1714	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	269	0	269	0	multi-exon	FALSE	canonical	3	38	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	6241	False	NA	30	True	AATAAA	-24	NA	102943089	102945278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102943588_102944062
ENSMUSG00000075467.5_26240307_26242112_1	chr2	-	732	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	10	2174	0	-2174	multi-exon	FALSE	canonical	3	313	junction_2	24.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCGGGCCTGGGCTCCT	NA	False	NA	-23	True	AGTAAA	-16	NA	26242112	26240306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26240571_26241346_26241487_26241784
ENSMUSG00000075467.5_26240307_26242112_2	chr2	-	592	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	2174	0	-2174	multi-exon	FALSE	canonical	3	60	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCGGGCCTGGGCTCCT	NA	False	NA	-23	True	AGTAAA	-16	NA	26242112	26240306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26240571_26241784
ENSMUSG00000075528.14_101297665_101308232_1	chr11	-	1307	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	209	0	0	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308232	101297664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000075700.11_58498699_58500556_1	chr3	+	1830	2	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	14580	2	at_least_one_novel_splicesite	FALSE	non_canonical	3	55	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	17	True	AATAAA	-20	NA	58498698	58500556	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_58499681_58499708
ENSMUSG00000075706.12_79889473_79892273_1	chr10	+	808	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	151	0	151	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	2493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000076432.14_21440072_21467589_1	chr12	-	2148	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	3100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCTGGTATTAGAAT	NA	False	NA	-12	True	AATAAA	-18	NA	21467589	21440071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076432.14_21440330_21467589_1	chr12	-	1890	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	258	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	2979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467589	21440329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076432.14_21440677_21467589_1	chr12	-	1543	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	605	0	-344	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	1804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCGTAGCTCTGGTAT	NA	False	NA	NA	False	AATAAA	-18	NA	21467589	21440676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076437.12_84499565_84501020_1	chr2	-	739	3	ISM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	94	6	0	0	intron_retention	FALSE	canonical	3	1785	junction_1	215.5	2067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	390	False	NA	-14	True	AATAAA	-19	NA	84501020	84499564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_84499742_84500330_84500461_84500588
ENSMUSG00000076441.10_31360219_31410684_1	chr2	+	1564	15	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	195	junction_12	721.33651817233	2278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31404690_31404848_31408737_31408804_31410383
ENSMUSG00000077450.14_33965575_33979305_1	chr17	-	1793	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	199	4117	-25	149	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTCAGCTTCTGTC	NA	False	NA	-10	True	ACTAAA	-27	NA	33979305	33965574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000077450.14_33965575_33979458_1	chr17	-	1946	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	46	4117	0	149	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTCAGCTTCTGTC	NA	False	NA	-10	True	ACTAAA	-27	NA	33979458	33965574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000077450.14_33966388_33979305_1	chr17	-	980	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	199	4930	-25	0	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	33979305	33966387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000078427.4_128657801_128713498_1	chr10	+	820	10	NIC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	355	junction_8	1536.32149252527	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_2	chr10	+	945	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	1839	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078440.11_81220301_81224186_1	chr10	+	1453	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220300	81224186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUSG00000078495.11_147838431_147860308_2	chr4	-	2691	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8355	False	NA	NA	False	NA	NA	NA	147860308	147838430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_147840693_147842158_147842286_147845677_147845826_147860154
ENSMUSG00000078496.10_147395002_147597037_1	chr4	+	563	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181872	-840	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	137.652541648246	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147395001	147597037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_1	chr4	+	600	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	117.848301736691	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_2	chr4	+	651	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	123.241632576009	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147577009_147578832_147578931_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_3	chr4	+	553	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	140	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597205_1	chr4	+	721	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-672	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	169	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGTGACTGTGACAAATG	NA	False	NA	NA	False	NA	NA	NA	147576873	147597205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147600521_1	chr4	+	3031	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	2578	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	129.181422813035	357	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	8	True	NA	NA	NA	147576873	147600521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597378_147597546_147598217_147599053
ENSMUSG00000078497.10_147390096_147481125_1	chr4	+	942	5	Fusion	ENSMUSG00000078497.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	-35	5664	multi-exon	FALSE	canonical	0	0	junction_1	239.243991565097	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147390095	147481125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_147390233_147447267_147447362_147469673_147469759_147472778_147472906_147480626
ENSMUSG00000078500.4_145590636_145625750_1	chr4	+	752	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-4728	-782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.3495801958527	203	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	5435	False	NA	NA	False	AATACA	-19	NA	145590635	145625750	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_145590812_145593464_145593558_145618982_145619087_145623213_145623341_145625498
ENSMUSG00000078502.11_145237359_145351915_1	chr4	+	2349	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	TRUE	non_canonical	0	0	junction_1	21.221058723196	140	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145349326_145350417_145351528_145351695
ENSMUSG00000078502.11_145237359_145351915_2	chr4	+	2396	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	21.221058723196	165	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145237496_145239546_145239640_145343640_145343746_145347127_145347255_145348721_145349326_145350417_145351528_145351695
ENSMUSG00000078502.11_145241467_145351915_1	chr4	+	2491	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	13	0	multi-exon	TRUE	canonical	0	0	junction_4	20.6533290294809	243	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5032	False	NA	NA	False	NA	NA	NA	145241466	145351915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145349913_145350837
ENSMUSG00000078502.11_145311773_145351915_1	chr4	+	2722	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.7891846886963	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311772	145351915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_145311905_145312571_145312707_145313929_145314095_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
ENSMUSG00000078503.10_145237361_145265524_1	chr4	+	2730	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	32	234	0	-234	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	926	False	NA	40	True	AATAAA	-16	NA	145237360	145265524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078566.9_138492693_138511235_1	chr7	-	1628	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	128	0	-128	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTTTATATTTACATAA	NA	False	NA	-24	True	AATAAA	-19	NA	138511235	138492692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUSG00000078578.10_135144077_135171821_2	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	-774	0	2	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144076	135171821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135172436_1	chr3	+	2127	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	-1389	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144076	135172436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135172436_2	chr3	+	2047	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	82	-617	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144076	135172436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135171060_1	chr3	+	800	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	1651	0	2	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144293	135171060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135171821_2	chr3	+	1561	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	890	0	2	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144293	135171821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135172436_1	chr3	+	2176	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	275	0	0	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144293	135172436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144508_135171060_1	chr3	+	752	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	182	2899	0	2	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144507	135171060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144508_135171821_1	chr3	+	1513	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	182	2138	0	2	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144507	135171821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144508_135172436_1	chr3	+	2128	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	182	1523	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144507	135172436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135145190_135171821_1	chr3	+	1610	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	292	613	218	2	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135145189	135171821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078584.10_119083206_119089884_1	chr4	-	959	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	25	6167	-2	373	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGTCTTTCTTTGTGT	NA	False	NA	-5	True	NA	NA	NA	119089884	119083205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ENSMUSG00000078584.10_119083405_119089884_1	chr4	-	760	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	25	6366	-2	174	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119083404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ENSMUSG00000078622.9_106090180_106107170_1	chr11	-	3247	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	1946	0	1425	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTGCTTTGACTT	NA	False	NA	-4	True	ATTAAA	-14	NA	106107170	106090179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078622.9_106091305_106107170_1	chr11	-	2122	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	3071	0	300	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTGAAAAAAGTGGAACG	NA	False	NA	-23	True	AATAAA	-32	NA	106107170	106091304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078652.10_101207039_101212925_3	chr11	+	1226	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	1438	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTAATTTCTGGAGAAC	NA	False	NA	96	True	NA	NA	NA	101207038	101212925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078652.10_101207039_101214363_1	chr11	+	2559	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078656.12_101144556_101150372_1	chr11	+	991	5	FSM	ENSMUSG00000078656.12	ENSMUST00000144306.9	361	5	0	-630	0	1	multi-exon	FALSE	canonical	3	19	junction_3	527.253733983933	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101147703_101147780_101149735
ENSMUSG00000078656.12_101144556_101150372_2	chr11	+	1104	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	-5	-223	0	1	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUSG00000078695.9_97576652_97579447_2	chr11	+	864	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	-127	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUSG00000078695.9_97576779_97579447_1	chr11	+	718	3	NNC	ENSMUSG00000078695.9	novel	737	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	62	junction_1	514.5	586	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_97577042_97577345_97577447_97579093
ENSMUSG00000078765.12_30262754_30264785_1	chr7	+	821	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_2	chr7	+	796	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	22	-235	0	1	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_3	chr7	+	855	8	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	195.900745380962	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_30262834_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_4	chr7	+	846	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078768.3_29776762_29789835_1	chr7	-	1592	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	117	0	53	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9890	False	NA	2	True	AAAACA	-22	NA	29789835	29776761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ENSMUSG00000078784.9_14673916_14676327_1	chr3	-	860	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	-24	-328	-6	328	multi-exon	FALSE	canonical	3	4849	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACATGA	NA	False	NA	NA	False	NA	NA	NA	14676327	14673915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_14674718_14676269
ENSMUSG00000078789.10_75068522_75069631_1	chr11	-	886	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	30	1754	-18	105	multi-exon	FALSE	canonical	3	105	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTGCTGCCCC	1667	False	NA	0	True	AATAAA	-21	NA	75069631	75068521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_75069214_75069437
ENSMUSG00000078812.11_69807546_69812094_1	chr11	-	1319	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	118	0	-78	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	2024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6389	False	NA	-15	True	AATAAA	-20	NA	69812094	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ENSMUSG00000078812.11_69807546_69812094_2	chr11	-	1225	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	118	0	-78	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	8410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6389	False	NA	-15	True	AATAAA	-20	NA	69812094	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUSG00000078813.4_3663097_3668469_1	chr7	-	1852	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	370	0	370	0	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGGCACCATCAATACT	9073	False	NA	-19	True	AAAACA	-45	NA	3668469	3663096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ENSMUSG00000078813.4_3664057_3668469_1	chr7	-	892	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	370	960	370	-960	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGTTTACCAAAAAATGTC	9073	False	NA	NA	False	TATAAA	-35	NA	3668469	3664056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ENSMUSG00000078861.9_177696680_177720255_1	chr2	-	616	4	NNC	ENSMUSG00000078861.9	novel	1372	3	NA	NA	-7	12808	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	39.4743235815666	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACCTGGAAAGTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	177720255	177696679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_177697003_177711347_177711409_177711615_177711743_177720150
ENSMUSG00000078861.9_177710483_177720255_1	chr2	-	1158	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	14	200	-7	-200	multi-exon	FALSE	canonical	3	51	junction_1	29	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	177720255	177710482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUSG00000078864.11_177190006_177411306_1	chr2	+	1425	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	-2	-449	multi-exon	FALSE	canonical	3	49	junction_2	20.8326666559997	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATATAGATAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	177190005	177411306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168
ENSMUSG00000078864.11_177190006_177411306_2	chr2	+	1370	3	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	-2	-449	multi-exon	FALSE	canonical	3	66	junction_1	15.5	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATATAGATAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	177190005	177411306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177190111_177409836_177409964_177410168
ENSMUSG00000078864.11_177190006_177411491_1	chr2	+	460	5	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	-2	-264	multi-exon	FALSE	canonical	3	49	junction_2	85.9200209497181	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177190005	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177190006_177411491_2	chr2	+	405	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	-2	-264	multi-exon	FALSE	canonical	3	66	junction_1	90.6899479913108	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177190005	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177190111_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177190006_177411491_3	chr2	+	562	6	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	-2	-264	multi-exon	FALSE	canonical	3	56	junction_3	79.4742725666615	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177190005	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177190111_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_1	chr2	+	443	5	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	combination_of_known_junctions	FALSE	canonical	3	49	junction_2	122.051218756717	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_177401169_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_2	chr2	+	480	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	0	264	0	-264	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_4	chr2	+	582	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	121.969941652305	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078865.9_177261975_177270011_1	chr2	-	444	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-8	-978	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2329	False	NA	NA	False	NA	NA	NA	177270011	177261974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
ENSMUSG00000078865.9_177261975_177270011_2	chr2	-	389	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-19	978	-8	-978	multi-exon	FALSE	canonical	3	688	junction_1	226.200992236747	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2329	False	NA	NA	False	NA	NA	NA	177270011	177261974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177262087_177263226_177263288_177263479_177263607_177269922
ENSMUSG00000078865.9_177261975_177275487_1	chr2	-	446	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	-978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	437.731652956466	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177275487	177261974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177275396
ENSMUSG00000078865.9_177261975_177275487_2	chr2	-	391	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	-978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	500.198182945742	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177275487	177261974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_177262087_177263226_177263288_177263479_177263607_177275396
ENSMUSG00000078865.9_177262176_177270011_1	chr2	-	1328	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-19	1179	-8	844	5prime_fragment	FALSE	canonical	3	827	junction_2	197.5	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	2329	False	NA	NA	False	NA	NA	NA	177270011	177262175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_-_177263288_177263479_177263607_177269922
ENSMUSG00000078865.9_177262176_177270011_2	chr2	-	1383	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	-8	-844	-8	844	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	2329	False	NA	NA	False	NA	NA	NA	177270011	177262175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
ENSMUSG00000078866.11_177156526_177165622_1	chr2	+	455	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-113	2374	0	-2374	5prime_fragment	FALSE	canonical	3	64	junction_2	12	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177156525	177165622	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_177156642_177165078_177165206_177165410
ENSMUSG00000078867.10_177079694_177090112_1	chr2	-	485	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ENSMUSG00000078867.10_177079694_177251337_1	chr2	-	498	4	NNC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-161224	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	105.54725113532	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177251337	177079693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_177079803_177080953_177081015_177081219_177081347_177251136
ENSMUSG00000078867.10_177079878_177090112_1	chr2	-	1452	5	NIC	ENSMUSG00000078867.10	novel	1415	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	110.628601636286	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ENSMUSG00000078869.3_176802701_176964135_1	chr2	-	604	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	153746	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	214.097070403954	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	176964135	176802700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_176803028_176958542_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_176957290_176964135_1	chr2	-	262	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-843	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_2	218	83	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	176964135	176957289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_176957402_176958542_176958604_176964046
ENSMUSG00000078869.3_176957290_176964135_3	chr2	-	389	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-843	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	176964135	176957289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_176957475_176964135_1	chr2	-	1345	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-1028	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATACAGATAAAAAGACT	NA	False	NA	-26	True	NA	NA	NA	176964135	176957474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_176958604_176958795_176958923_176964046
ENSMUSG00000078870.10_176885960_176898244_1	chr2	-	467	5	NIC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-30	682	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176898244	176885959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078870.10_176886186_176898244_1	chr2	-	1398	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	-30	-456	-30	456	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	176898244	176886185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078872.10_176766113_176778017_1	chr2	+	1815	3	ISM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	0	810	0	-810	5prime_fragment	FALSE	canonical	3	143	junction_2	82	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAATTTAAAACAATTCA	NA	False	NA	NA	False	NA	NA	NA	176766112	176778017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_176766152_176776035_176776163_176776368
ENSMUSG00000078872.10_176766113_176813051_1	chr2	+	392	5	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	0	33911	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	52.578512721453	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176766112	176813051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_176766152_176772059_176772113_176776035_176776163_176776368_176776430_176812939
ENSMUSG00000078877.12_176490405_176500814_1	chr2	+	462	5	NIC	ENSMUSG00000078877.12	novel	1213	4	NA	NA	0	403	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176490404	176500814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
ENSMUSG00000078889.12_175583347_175592886_1	chr2	-	1241	3	FSM	ENSMUSG00000078889.12	ENSMUST00000109020.9	3438	3	0	2197	0	-311	multi-exon	FALSE	canonical	3	24	junction_1	41.5	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCTATAAATGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	175592886	175583346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_175584326_175584530_175584658_175592751
ENSMUSG00000078903.11_175038069_175048678_1	chr2	-	460	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	32	1362	-9	666	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175048678	175038068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078903.11_175038387_175048678_1	chr2	-	1299	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	14	-348	-9	348	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175048678	175038386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078906.10_174846549_174859862_1	chr2	+	1335	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5485	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	600.5	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846548	174859862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_174846644_174858430_174858558_174858749
ENSMUSG00000078906.10_174846549_174859862_2	chr2	+	1390	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5485	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	495.211963596286	404	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846548	174859862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_174846644_174855220_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859744_2	chr2	+	1203	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1297	0	339	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTTCCCATTTCATGT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859862_1	chr2	+	1321	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1179	0	457	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852033	174859862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859862_2	chr2	+	1376	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	-457	0	457	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852033	174859862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174860063_2	chr2	+	436	5	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	658	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174852033	174860063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078919.11_168052201_168072284_1	chr2	-	1045	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	15	1233	-2	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052201_168072284_2	chr2	-	992	9	NIC	ENSMUSG00000078919.11	novel	2293	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	32	junction_2	140.419683449294	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_168052557_168053285_168053348_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052436_168072284_1	chr2	-	810	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	15	1468	-2	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCGTGTTCATTTC	NA	False	NA	-14	True	CATAAA	-16	NA	168072284	168052435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078923.11_167449764_167473921_1	chr2	-	1741	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	94	206	-14	0	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9412	False	NA	NA	False	AATAAA	-22	NA	167473921	167449763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
ENSMUSG00000078923.11_167449764_167473921_2	chr2	-	1860	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	-14	-922	-14	0	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	1395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9412	False	NA	NA	False	AATAAA	-22	NA	167473921	167449763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
ENSMUSG00000078941.10_100787870_100802867_1	chr13	+	915	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	383	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACATCTCTTTAATAGTA	NA	False	NA	37	True	AATAAA	-14	NA	100787869	100802867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
ENSMUSG00000078952.10_97619209_97633148_2	chr13	+	2397	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	367	0	-367	multi-exon	FALSE	canonical	3	54	junction_2	70.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGCAATGTCCTT	NA	False	NA	5	True	NA	NA	NA	97619208	97633148	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_97619286_97619456_97619541_97630912
ENSMUSG00000078952.10_97619209_97633515_1	chr13	+	3339	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
ENSMUSG00000078954.10_84604284_84656405_1	chr15	+	1490	12	NNC	ENSMUSG00000078954.10	novel	1464	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.989143138924	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604283	84656405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_+_84604314_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078974.11_16451651_16458166_1	chr11	-	427	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	0	264	0	0	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	1114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458166	16451650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
ENSMUSG00000079008.3_150099437_150109597_1	chr2	+	395	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	0	2623	0	-2623	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAATGCAGAGACACCC	NA	False	NA	NA	False	NA	NA	NA	150099436	150109597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
ENSMUSG00000079009.9_150023675_150048136_1	chr2	+	631	4	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	0	12937	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	25.381533094402	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTCTTGGCCTCGTTC	NA	False	NA	NA	False	NA	NA	NA	150023674	150048136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150047809
ENSMUSG00000079012.12_104343728_104360515_1	chr12	+	1802	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9695	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	63	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTGCTCTCAGCTTGCA	659	False	NA	17	True	AATACA	-26	NA	104343727	104360515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
ENSMUSG00000079036.11_87474850_87490614_1	chr12	-	1951	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	-5	1911	-5	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490614	87474849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ENSMUSG00000079104.5_57277198_57287057_1	chr12	+	2109	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	0	-389	0	389	multi-exon	FALSE	canonical	3	317	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTAAAGTTTGTTTG	NA	False	NA	NA	False	AATAAA	-25	NA	57277197	57287057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_57277398_57285148
ENSMUSG00000079108.7_55277226_55309392_1	chr12	+	2140	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	273	1229	273	-413	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	55277225	55309392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
ENSMUSG00000079111.4_143389593_143406862_1	chr5	+	1035	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	794	0	-794	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGACAGTTTCCAAAAGT	NA	False	NA	6	True	AATAAA	-18	NA	143389592	143406862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUSG00000079165.11_137639596_137641161_1	chr5	+	1201	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	-103	3	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1101	False	NA	23	True	AATAAA	-15	NA	137639595	137641161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079179.10_3285504_3288273_1	chr12	+	869	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	0	3137	0	0	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285503	3288273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
ENSMUSG00000079184.11_56905705_56934887_1	chr14	+	2975	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUSG00000079184.11_56905956_56934887_1	chr14	+	2688	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	251	0	251	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	2029	False	NA	32	True	ATTAAA	-18	NA	56905955	56934887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUSG00000079197.11_55824904_55828410_1	chr14	-	822	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	134	6	-5	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	788	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATATTACCTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	55828410	55824903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUSG00000079316.11_165240249_165262663_1	chrX	-	1247	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	0	-21	0	multi-exon	FALSE	canonical	3	555	junction_2	7.5	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262663	165240248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079316.11_165240451_165262663_1	chrX	-	1045	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	202	-21	-202	multi-exon	FALSE	canonical	3	555	junction_2	7.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACCAAGAACTGACTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	165262663	165240450	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079316.11_165240587_165262663_1	chrX	-	909	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	338	-21	159	multi-exon	FALSE	canonical	3	555	junction_2	7.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGCCTCATTAGTCG	NA	False	NA	-1	True	AATAAA	-15	NA	165262663	165240586	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079317.11_165223772_165236136_1	chrX	+	1411	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	202	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165223771	165236136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ENSMUSG00000079334.9_107457868_107461249_1	chr9	+	1501	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	552	0	552	0	multi-exon	FALSE	canonical	3	8	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACAGTTTATTGGTT	NA	False	NA	12	True	AATAAA	-18	NA	107457867	107461249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107458135_107460015
ENSMUSG00000079426.14_113355154_113366020_1	chr6	+	803	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	78	1389	0	44	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGCTTGTAGAAGACT	NA	False	NA	-11	True	TTTAAA	-17	NA	113355153	113366020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079426.14_113355154_113366614_1	chr6	+	1397	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	78	795	0	1	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTGCTCTGTGTGGGT	NA	False	NA	39	True	ATTAAA	-31	NA	113355153	113366614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079427.11_88570659_88601623_1	chr9	-	724	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601623	88570658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_88571039_88597540_88597803_88601541
ENSMUSG00000079435.10_133486839_133488805_1	chrX	+	405	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	401	6	0	0	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	4152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	75	True	ATTAAA	-16	NA	133486838	133488805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUSG00000079471.5_45911897_45912896_1	chr17	-	903	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	-4	-283	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912896	45911896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45912612_45912708
ENSMUSG00000079471.5_45911897_45912896_2	chr17	-	819	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	0	-382	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912896	45911896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45912612_45912792
ENSMUSG00000079477.10_87976088_88022252_1	chr6	-	2246	7	NIC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
ENSMUSG00000079477.10_87976425_88022252_1	chr6	-	1822	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	337	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCACTATCCTACTC	NA	False	NA	36	True	NA	NA	NA	88022252	87976424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079477.10_87976787_88022252_1	chr6	-	1460	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	699	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTGGATTGTGTGTTT	NA	False	NA	0	True	ATTAAA	-21	NA	88022252	87976786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079484.13_30156733_30172160_1	chr2	+	1397	11	ISM	ENSMUSG00000079484.13	ENSMUST00000091132.13	1353	12	192	1	0	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_30156831_30169538_1	chr2	+	679	8	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	21	junction_7	22.4844617549134	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	30156830	30169538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
ENSMUSG00000079484.13_30156831_30172160_1	chr2	+	1299	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	98	0	0	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156830	30172160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079523.9_72934336_72935117_1	chr6	-	522	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	168	0	168	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935117	72934335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72934636_72934895
ENSMUSG00000079523.9_72934336_72935382_1	chr6	-	735	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	-302	0	0	multi-exon	FALSE	canonical	3	27215	junction_1	0	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935382	72934335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72935008_72935319
ENSMUSG00000079577.2_66738400_66750635_1	chrX	+	1662	9	NNC	ENSMUSG00000079577.2	novel	782	8	NA	NA	-904	679	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	9.9365172470036	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738399	66750635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_66738557_66739259_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
ENSMUSG00000079578.2_66725827_66738043_1	chrX	-	1631	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-875	679	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738043	66725826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
ENSMUSG00000079584.3_56454514_56534133_1	chrX	+	2004	15	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	211.8629827728	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	15	True	TATAAA	-8	NA	56454513	56534133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_+_56454734_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ENSMUSG00000079610.10_36578220_36586300_1	chr1	-	873	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	12	-221	0	221	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACATGGGCAAAGATAAAT	7026	False	NA	-8	True	AATAAA	-19	NA	36586300	36578219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
ENSMUSG00000079610.10_36578220_36586300_2	chr1	-	838	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	226	1045	0	221	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACATGGGCAAAGATAAAT	7026	False	NA	-8	True	AATAAA	-19	NA	36586300	36578219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ENSMUSG00000079614.5_67908045_67926672_2	chr18	+	1558	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	99	1885	0	1009	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908044	67926672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUSG00000079641.4_36346173_36348834_1	chrX	-	435	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	6420.5	17334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_36346403_36347637_36347786_36348777
ENSMUSG00000079641.4_36346173_36348834_2	chrX	-	391	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	221	0	-15	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	17868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36346403_36347637_36347742_36348777
ENSMUSG00000079657.11_24748039_24752693_1	chr17	-	1395	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	169	11	-7	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752693	24748038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_24748039_24752693_2	chr17	-	1318	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752693	24748038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079658.10_16712991_16727266_1	chr1	-	1040	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	-24	-375	0	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
ENSMUSG00000079658.10_16713415_16727102_1	chr1	-	542	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	6	1466	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727102	16713414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUSG00000079658.10_16713415_16727266_1	chr1	-	536	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	424	0	0	multi-exon	FALSE	canonical	3	1066	junction_3	717.825574603995	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727266	16713414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUSG00000079845.9_72117951_72126091_1	chrX	-	1157	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126091	72117950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
ENSMUSG00000079845.9_72117951_72126091_2	chrX	-	1133	9	NIC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	103.290548938419	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126091	72117950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125988
ENSMUSG00000079845.9_72117951_72126091_3	chrX	-	1193	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126091	72117950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
ENSMUSG00000080717.11_97798527_97817956_1	chr16	+	1317	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-7	-641	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798526	97817956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
ENSMUSG00000080717.11_97798534_97811544_1	chr16	+	517	4	ISM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	0	5771	0	344	5prime_fragment	FALSE	canonical	3	112	junction_3	8.80656320908194	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTACTCTGCAAATTCA	NA	False	NA	NA	False	NA	NA	NA	97798533	97811544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318
ENSMUSG00000081355.2_94520066_94665453_1	chr3	-	2519	12	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-30	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665453	94520065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ENSMUSG00000081534.4_97682236_97689687_1	chr15	+	1650	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	886	0	559	multi-exon	TRUE	canonical	3	145	junction_2	1	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCAGGGTGTTTCTTTGG	NA	False	NA	12	True	AATACA	-17	NA	97682235	97689687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_97682498_97687783_97687952_97688467
ENSMUSG00000082035.2_95528465_95529115_1	chrX	+	610	2	Genic_Genomic	ENSMUSG00000082035.2	novel	621	1	NA	NA	0	30	multi-exon	FALSE	non_canonical	3	22	junction_1	0	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGGAAAAATATCATTC	NA	False	NA	NA	False	AATAAA	-44	NA	95528464	95529115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chrX_+_95528541_95528581
ENSMUSG00000082082.2_145136836_145178235_1	chr4	+	2508	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	0	1909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2040487905669	912	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145136835	145178235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036
ENSMUSG00000082082.2_145159007_145178235_1	chr4	+	2177	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	777	multi-exon	FALSE	non_canonical	0	0	junction_2	29.5	523	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159006	145178235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr4_+_145159152_145176036_145176318_145176484
ENSMUSG00000083844.9_5712150_5730623_1	chr11	+	836	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	4087	0	-1253	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712149	5730623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
ENSMUSG00000083844.9_5712150_5730623_2	chr11	+	572	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	21	1253	0	-1253	multi-exon	FALSE	canonical	3	68	junction_2	16.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712149	5730623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5712241_5715508_5715572_5730205
ENSMUSG00000083899.3_77185137_77187252_1	chr11	+	1915	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	867	528	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	710	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTTGCAGGTGGCCA	NA	False	NA	NA	False	GATAAA	-37	NA	77185136	77187252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_77185699_77185899
ENSMUSG00000084786.10_20556117_20558073_1	chr9	+	444	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	-13	363	0	0	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556116	20558073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
ENSMUSG00000084786.10_20556117_20558073_2	chr9	+	570	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	1943	-2	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556116	20558073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
ENSMUSG00000084957.4_53919441_53932909_2	chr19	-	745	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	149	1149	0	0	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932909	53919440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
ENSMUSG00000085105.3_33933802_33936157_1	chr7	+	700	2	FSM	ENSMUSG00000085105.3	ENSMUST00000127010.2	4175	2	0	3475	0	1180	multi-exon	FALSE	canonical	3	45	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGTTATTTTACTTATA	NA	False	NA	NA	False	AATAAA	-1	NA	33933801	33936157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_33933921_33935576
ENSMUSG00000085148.2_75352470_75357502_1	chr11	+	1647	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	105	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAAATTTTTACTCT	3943	False	NA	8	True	AATAAA	-19	NA	75352469	75357502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_75352582_75354518_75354684_75356132
ENSMUSG00000085156.9_6475591_6478766_1	chr11	-	516	4	NNC	ENSMUSG00000085156.9	novel	611	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	196.105980417619	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_-_6475818_6476354_6476438_6478305_6478375_6478629
ENSMUSG00000085208.4_86092196_86100373_1	chr11	+	2778	2	FSM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	0	1645	0	-1645	multi-exon	FALSE	canonical	3	24	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCGTCTCTGTTTCTGTG	NA	False	NA	9	True	NA	NA	NA	86092195	86100373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_86092379_86097778
ENSMUSG00000085241.8_132079245_132080944_1	chr4	-	802	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-28	14111	-28	-12443	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_-_132080010_132080907
ENSMUSG00000085241.8_132079439_132080944_1	chr4	-	189	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	53	195	0	-124	multi-exon	FALSE	canonical	3	959	junction_1	21	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGTAAATACATTTCT	NA	False	NA	NA	False	NA	NA	NA	132080944	132079438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132079555_132079973_132080010_132080907
ENSMUSG00000085385.8_158197705_158203463_1	chr2	-	977	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8326	False	NA	-17	True	AATAAA	-12	NA	158203463	158197704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
ENSMUSG00000085412.8_52079929_52090048_1	chr6	+	931	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	-540	0	540	multi-exon	FALSE	canonical	3	144	junction_2	38	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	778	False	NA	NA	False	AATAAA	-20	NA	52079928	52090048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_52080017_52083750_52083877_52089331
ENSMUSG00000085438.2_119424784_119428035_1	chr2	+	1428	2	ISM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	6	3192	0	-3192	5prime_fragment	FALSE	canonical	3	428	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCGAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	119424783	119428035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_119424916_119426739
ENSMUSG00000085438.2_119424784_119430410_1	chr2	+	727	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	7573	0	-817	multi-exon	FALSE	canonical	3	345	junction_2	41.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGGGTGACTTCAG	NA	False	NA	NA	False	TTTAAA	-29	NA	119424783	119430410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085438.2_119424784_119430525_1	chr2	+	842	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	7458	0	-702	multi-exon	FALSE	canonical	3	345	junction_2	41.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTAAATTCTGGCTC	NA	False	NA	10	True	AATATA	-18	NA	119424783	119430525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085438.2_119424784_119430525_2	chr2	+	673	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	6	702	0	-702	multi-exon	FALSE	canonical	3	71	junction_2	178.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTAAATTCTGGCTC	NA	False	NA	10	True	AATATA	-18	NA	119424783	119430525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUSG00000085438.2_119424784_119431227_1	chr2	+	1544	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	6756	0	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424783	119431227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085492.8_71895552_71905741_1	chr17	-	1149	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905741	71895551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71905144
ENSMUSG00000085492.8_71895552_71905762_1	chr17	-	1295	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	-514	0	-12	0	multi-exon	FALSE	canonical	3	25	junction_2	30	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71895980_71897482_71897518_71904930
ENSMUSG00000085492.8_71895552_71905762_2	chr17	-	1384	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71904930
ENSMUSG00000085492.8_71895552_71905762_3	chr17	-	1081	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71905144
ENSMUSG00000085525.8_146206901_146214965_1	chr4	+	458	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	3	242	junction_1	5.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATGAGTTC	NA	False	NA	-6	True	NA	NA	NA	146206900	146214965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146207223_146209452_146209546_146214922
ENSMUSG00000085525.8_146206901_146214965_2	chr4	+	502	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	53	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATGAGTTC	NA	False	NA	-6	True	NA	NA	NA	146206900	146214965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_146207267_146209452_146209546_146214922
ENSMUSG00000085794.6_83669788_83675055_1	chr6	-	1233	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	48.1949167444037	67	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_83670449_83671333_83671456_83672566_83672825_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_2	chr6	-	1126	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	51.4587213210744	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_83670449_83671333_83671456_83672566_83672604_83672682_83672797_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_3	chr6	-	1347	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	47.6884419959386	81	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_-_83670449_83671333_83671456_83672566_83672939_83673961_83674051_83674952
ENSMUSG00000085860.2_97489337_97510153_1	chr11	+	1153	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	3566	0	296	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGAAGTTTCTACCCT	NA	False	NA	NA	False	NA	NA	NA	97489336	97510153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr11_+_97489494_97505749_97505855_97509262
ENSMUSG00000086015.2_95749691_95750956_1	chr11	+	355	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	0	914	0	-914	multi-exon	TRUE	canonical	3	111	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGCTATTGTATAAGTC	1026	False	NA	9	True	AATATA	-20	NA	95749690	95750956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95749909_95750819
ENSMUSG00000086147.3_147056433_147075934_1	chr4	+	2751	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	17.2788888531641	99	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147056575_147065612_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
ENSMUSG00000086147.3_147056433_147075934_2	chr4	+	2671	5	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.5586080332859	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147056575_147067150_147067255_147071090_147071218_147073383_147074794_147075046
ENSMUSG00000086147.3_147056433_147114014_1	chr4	+	1166	3	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	38802	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.5	126	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGCGAGACTGT	NA	False	NA	NA	False	NA	NA	NA	147056432	147114014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_147056575_147058404_147058498_147113083
ENSMUSG00000086202.2_45586617_45588459_1	chr2	+	830	3	NIC	ENSMUSG00000086202.2	novel	635	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	17	junction_1	10	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTCTTTATATCAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	45586616	45588459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_45586642_45586810_45587155_45587998
ENSMUSG00000086219.8_116576779_116600638_1	chr5	+	513	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	0	481	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576778	116600638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
ENSMUSG00000086219.8_116576779_116600638_2	chr5	+	452	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	2908	0	481	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576778	116600638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
ENSMUSG00000086228.4_65279007_65285331_1	chr9	+	967	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-121	0	-121	0	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCTGCAGAGGCAGGAGG	NA	False	NA	33	True	NA	NA	NA	65279006	65285331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ENSMUSG00000086228.4_65279007_65285487_1	chr9	+	1123	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-121	-156	-121	156	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGTGTAGTGACACATG	NA	False	NA	20	True	NA	NA	NA	65279006	65285487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ENSMUSG00000086228.4_65279007_65287497_1	chr9	+	3133	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-121	-2166	-121	-162	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGGTTTTCTCATTCA	NA	False	NA	NA	False	NA	NA	NA	65279006	65287497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ENSMUSG00000086316.9_152506623_152524261_1	chrX	+	674	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	17	655	0	1	multi-exon	FALSE	canonical	3	65	junction_2	49	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATGTCCAAATAAATTTT	NA	False	NA	10	True	ATTAAA	-15	NA	152506622	152524261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_152506934_152508700_152508838_152524035
ENSMUSG00000086429.10_113047359_113054152_1	chr6	-	1056	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	142	-376	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054152	113047358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113048397_113054134
ENSMUSG00000086454.8_104389524_104391285_1	chr2	+	1421	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	77	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389523	104391285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389830_104390068_104390321_104390422
ENSMUSG00000086454.8_104389524_104399270_1	chr2	+	1388	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	58	junction_1	259.5	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389595_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_10	chr2	+	1228	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_11	chr2	+	1185	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_12	chr2	+	1345	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	-13	-796	0	93	multi-exon	FALSE	canonical	3	101	junction_1	238	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104389552_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_2	chr2	+	1463	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_3	chr2	+	1454	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	222.40653467618	437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389821_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_4	chr2	+	1623	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	16	-869	0	93	multi-exon	FALSE	canonical	3	184	junction_1	196.5	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104389830_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_5	chr2	+	1549	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	0	-872	0	93	multi-exon	FALSE	canonical	3	45	junction_1	266	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104389756_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_6	chr2	+	1862	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-280	-875	0	93	multi-exon	FALSE	canonical	3	577	junction_1	0	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_7	chr2	+	1702	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	251	junction_2	163	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_9	chr2	+	1389	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	219.022068903265	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_104389756_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086591.2_69343172_69344516_1	chr11	+	930	2	NNC	ENSMUSG00000086591.2	novel	859	2	NA	NA	3798	14	intron_retention	FALSE	canonical	3	26	junction_1	0	27	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATGTCTAGAACTTGATTT	2371	False	NA	NA	False	AATAAA	-32	NA	69343171	69344516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_69343301_69343715
ENSMUSG00000086748.2_10344094_10370045_1	chr2	-	614	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8807	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_3	186.111674957687	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370045	10344093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369964
ENSMUSG00000086748.2_10344094_10370045_2	chr2	-	700	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8807	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	315	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370045	10344093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351920_10352011_10369968
ENSMUSG00000086841.2_62493703_62495633_1	chr11	+	472	5	NNC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	1867.01606849004	3777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr11_+_62493860_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUSG00000087166.10_98615030_98626717_1	chr4	+	3095	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	45	0	0	0	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98615029	98626717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
ENSMUSG00000087193.8_7917830_7937416_1	chrX	+	680	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	1779	0	-1064	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCCGTGGCTCCCAG	NA	False	NA	3	True	NA	NA	NA	7917829	7937416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chrX_+_7917897_7926454_7926526_7936874
ENSMUSG00000087193.8_7917830_7939198_1	chrX	+	1109	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	NA	False	NA	29	True	TATAAA	-19	NA	7917829	7939198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chrX_+_7917897_7936874_7937304_7938585
ENSMUSG00000087260.6_107186315_107191115_1	chr3	+	460	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	283	0	-280	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAATGTGGACTCCCTT	3151	False	NA	NA	False	ATTAAA	-27	NA	107186314	107191115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUSG00000087260.6_107186315_107191398_1	chr3	+	764	4	NNC	ENSMUSG00000087260.6	novel	743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	550.836333829448	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_107186430_107187185_107187248_107189203_107189343_107190950
ENSMUSG00000087307.2_123557052_123565010_1	chr4	+	555	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2622	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	62	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123557051	123565010	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_+_123557174_123561406_123561541_123564711
ENSMUSG00000087332.2_99457737_99461961_1	chr4	+	1067	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	0	-713	0	713	multi-exon	TRUE	canonical	3	84	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGATAGCTGGTCTCTTCA	NA	False	NA	3	True	AATAAA	-24	NA	99457736	99461961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_99457876_99461033
ENSMUSG00000087547.2_157437503_157439240_1	chr2	-	794	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_157438071_157439014
ENSMUSG00000087590.3_33927945_33929042_1	chr18	+	840	2	ISM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	-3	0	3	intron_retention	FALSE	canonical	3	377	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTATGTTGTGTGATT	NA	False	NA	18	True	AATAAA	-22	NA	33927944	33929042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr18_+_33928178_33928435
ENSMUSG00000087590.3_33927945_33929042_2	chr18	+	691	2	NIC	ENSMUSG00000087590.3	novel	430	3	NA	NA	0	3	intron_retention	FALSE	canonical	3	425	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTATGTTGTGTGATT	NA	False	NA	18	True	AATAAA	-22	NA	33927944	33929042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr18_+_33928499_33928905
ENSMUSG00000087651.4_83558790_83598157_1	chr10	+	664	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	61	469	0	130	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUSG00000087651.4_83558790_83598157_2	chr10	+	659	6	NIC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	0	130	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	34.6098251945889	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595461_83595495_83597781
ENSMUSG00000087687.4_3671551_3673372_1	chr8	+	330	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	863	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5587	False	NA	10	True	NA	NA	NA	3671550	3673372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000089768.3_135874771_135877624_1	chrX	-	548	3	NNC	ENSMUSG00000089768.3	novel	439	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877624	135874770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chrX_-_135874989_135876038_135876252_135877507
ENSMUSG00000089847.9_105289771_105290557_1	chr7	+	478	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	508	2287	0	2	multi-exon	FALSE	canonical	3	351	junction_1	22.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTCTATGGGTACC	NA	False	NA	9	True	AATAAA	-18	NA	105289770	105290557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234
ENSMUSG00000089847.9_105289771_105291053_1	chr7	+	581	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	116	-3	0	3	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTCTTGTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105289770	105291053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUSG00000089911.5_116425652_116456259_1	chr3	-	1876	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	67	839	0	591	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCTCTGCCATTTCCT	NA	False	NA	-7	True	ATTAAA	-14	NA	116456259	116425651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUSG00000089997.3_87689007_87699783_1	chr6	-	1230	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	0	36432	0	-36432	5prime_fragment	TRUE	canonical	3	8	junction_6	5.95585612840188	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699783	87689006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
ENSMUSG00000090000.3_77017741_77028422_1	chr18	+	488	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	28	886	0	37	multi-exon	FALSE	canonical	3	1641	junction_2	78	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTTTTTTTTTTTTTT	NA	False	NA	21	True	AATAAA	-18	NA	77017740	77028422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUSG00000090083.12_29833764_29860625_1	chr17	+	2064	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	0	3340	0	2	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCAGCTGGGCTTCGG	NA	False	NA	18	True	AATAAA	-17	NA	29833763	29860625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090083.12_29833864_29860625_1	chr17	+	1964	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	100	3340	0	2	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCAGCTGGGCTTCGG	NA	False	NA	18	True	AATAAA	-17	NA	29833863	29860625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090093.9_174974575_175017647_1	chr2	-	440	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	703	3	NA	NA	17	143	multi-exon	FALSE	canonical	3	11	junction_2	9.5	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATATGTAATTATTGT	NA	False	NA	NA	False	NA	NA	NA	175017647	174974574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_-_174974783_174974988_174975116_175017542
ENSMUSG00000090093.9_174974575_175017647_2	chr2	-	413	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	703	3	NA	NA	17	143	multi-exon	FALSE	canonical	3	30	junction_1	2.5	88	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATATGTAATTATTGT	NA	False	NA	NA	False	NA	NA	NA	175017647	174974574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_-_174974783_174974988_174975089_175017542
ENSMUSG00000090115.8_47983645_47991981_1	chr17	+	1594	5	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	42030	5682	0	0	3prime_fragment	FALSE	canonical	3	71	junction_4	30.9141957682874	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000090247.8_128755783_128758895_1	chr10	-	700	3	ISM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	498	0	0	0	3prime_fragment	FALSE	canonical	3	559	junction_1	44.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128758895	128755782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr10_-_128755977_128756427_128756561_128758522
ENSMUSG00000090258.8_76812349_76830068_1	chr12	+	556	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	0	114	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCTAGAGTGAGATGT	NA	False	NA	8	True	GATAAA	-18	NA	76812348	76830068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
ENSMUSG00000090266.11_116734387_116740458_1	chr11	+	885	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	283	108	0	3	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	8951	False	NA	20	True	CATAAA	-20	NA	116734386	116740458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_116734387_116740566_2	chr11	+	993	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	283	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8951	False	NA	15	True	ATTAAA	-17	NA	116734386	116740566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090459.2_32014881_32027353_1	chr14	-	589	3	Fusion	ENSMUSG00000115691.2_ENSMUSG00000090459.2	novel	391	2	NA	NA	-10422	0	multi-exon	FALSE	canonical	3	32	junction_1	10	116	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCATTGACAAAGTTT	NA	False	NA	-13	True	ATTAAA	-17	NA	32027353	32014880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr14_-_32015223_32016885_32016987_32027207
ENSMUSG00000090626.10_72368385_72399243_1	chr9	-	1271	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	140	1383	0	0	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGGTGAAATAAACAGA	7876	False	NA	-32	True	AATAAA	-14	NA	72399243	72368384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090744.8_41193704_41210253_1	chr7	-	2824	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	-1394	0	1394	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTTCTTTTTTTTTTAA	NA	False	NA	-1	True	NA	NA	NA	41210253	41193703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ENSMUSG00000090862.4_115930747_115933414_1	chr7	-	1015	5	NIC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-13	0	intron_retention	FALSE	canonical	3	42	junction_1	4548.69206475884	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933414	115930746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr7_-_115930819_115931613_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090935.11_81548570_81579651_1	chr12	-	766	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	34	3855	3	0	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTTACATATTTTACTA	NA	False	NA	-57	True	AATGAA	-3	NA	81579651	81548569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000091537.3_108907056_108911446_1	chr9	-	634	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	209	101	0	-101	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	2017	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCATTTGTGTGTGCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	108911446	108907055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091705.9_35562113_35565738_1	chr17	+	1597	5	NIC	ENSMUSG00000091705.9	novel	1150	5	NA	NA	895	0	combination_of_known_splicesites	TRUE	canonical	1	3	junction_4	2.23606797749979	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	5775	False	NA	NA	False	NA	NA	NA	35562112	35565738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564819
ENSMUSG00000091705.9_35562113_35565738_2	chr17	+	1646	6	NIC	ENSMUSG00000091705.9	novel	1150	5	NA	NA	895	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_4	2.33238075793812	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	5775	False	NA	NA	False	NA	NA	NA	35562112	35565738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564635_35564685_35564819
ENSMUSG00000091780.4_89255843_89258326_1	chr15	-	1339	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2916	-291	2916	291	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258326	89255842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
ENSMUSG00000091803.8_81518869_81531888_1	chr12	-	610	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	6	1391	0	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	994	False	NA	-8	True	ATTAAA	-12	NA	81531888	81518868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
ENSMUSG00000091896.9_35904641_35938669_1	chr18	+	898	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	30	1552	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAAGTCCTTTTGATTT	NA	False	NA	-9	True	AATAAA	-20	NA	35904640	35938669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091896.9_35904641_35939490_1	chr18	+	1719	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	30	731	0	617	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTGAATAGGCTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	35904640	35939490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091931.6_102719534_102723900_1	chr12	-	791	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	159	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6521	False	NA	-1	True	AATAAA	-20	NA	102723900	102719533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_102719714_102719915_102720426_102723799
ENSMUSG00000091931.6_102719534_102724062_1	chr12	-	953	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6359	False	NA	-1	True	AATAAA	-20	NA	102724062	102719533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_-_102719714_102719915_102720426_102723799
ENSMUSG00000091931.6_102719720_102724062_1	chr12	-	969	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	-3	186	0	-186	multi-exon	FALSE	canonical	3	237	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATCGTTGAATCAAATGG	6359	False	NA	NA	False	NA	NA	NA	102724062	102719719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102720426_102723799
ENSMUSG00000092074.3_6360819_6367709_1	chr17	-	705	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	66	2550	-16	-2550	multi-exon	TRUE	canonical	3	2579	junction_4	2048.76394138027	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6367709	6360818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ENSMUSG00000092074.3_6360819_6371883_1	chr17	-	803	5	Fusion	ENSMUSG00000092074.3_ENSMUSG00000118494.2	novel	3321	5	NA	NA	128	-2550	multi-exon	FALSE	canonical	3	145	junction_4	3028.61844534765	79	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6371883	6360818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
ENSMUSG00000092074.3_6364444_6367704_1	chr17	-	846	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	71	6175	-11	-6175	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATGTCTTACAACTAC	NA	False	NA	NA	False	NA	NA	NA	6367704	6364443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_6365234_6367648
ENSMUSG00000092203.8_35169218_35171444_1	chr17	-	790	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	94	junction_3	41.9947086613963	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_35169452_35169673_35169824_35170860_35171150_35171327
ENSMUSG00000092203.8_35169218_35171444_2	chr17	-	542	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	76.6072233321811	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171327
ENSMUSG00000092203.8_35169218_35171444_3	chr17	-	601	5	NNC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	64.9706664580255	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171090_35171150_35171327
ENSMUSG00000092212.4_119049554_119052816_1	chr9	-	1311	7	NNC	ENSMUSG00000092212.4	novel	1458	6	NA	NA	7942	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	1.89296944860009	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTTGTACTGTCTACT	NA	False	NA	NA	False	NA	NA	NA	119052816	119049553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_119049990_119050186_119050403_119051512_119051622_119051804_119052020_119052238_119052334_119052418_119052540_119052697
ENSMUSG00000092335.2_42226955_42241971_1	chr7	-	3677	4	FSM	ENSMUSG00000092335.2_ENSMUSG00000108446.2	ENSMUST00000173283.2	1425	4	0	-2252	0	2252	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTCTTATCT	NA	False	NA	-2	True	AGTAAA	-24	NA	42241971	42226954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092335.2_42230128_42241971_1	chr7	-	504	4	FSM	ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	921	0	-921	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATGAATGTGATAAATC	NA	False	NA	5	True	NA	NA	NA	42241971	42230127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092349.2_34112191_34125649_1	chr17	+	865	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11918	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112190	34125649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_34112309_34124501_34124892_34125292
ENSMUSG00000092354.8_101988021_101992198_1	chr5	+	849	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_1	6	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_101988098_101989616_101989940_101991749
ENSMUSG00000092354.8_101988021_101992198_2	chr5	+	789	3	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	72	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_+_101988038_101989616_101989940_101991749
ENSMUSG00000092390.2_38306773_38322225_1	chr17	+	442	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13765	-1062	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTCTACAAATACATAAA	NA	False	NA	NA	False	NA	NA	NA	38306772	38322225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092417.4_35340458_35343791_1	chr17	+	1272	3	NIC	ENSMUSG00000092417.4	novel	676	2	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4588	False	NA	15	True	AATAAA	-15	NA	35340457	35343791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_35340527_35342028_35342636_35343195
ENSMUSG00000092558.4_47922523_47935176_1	chr17	+	1617	3	NIC	ENSMUSG00000092558.4	novel	2054	4	NA	NA	-10	3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	133.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	11	True	AATAAA	-16	NA	47922522	47935176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr17_+_47922618_47923887_47924043_47933809
ENSMUSG00000092558.4_47922523_47935176_2	chr17	+	1871	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	16	167	-10	3	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	11	True	AATAAA	-16	NA	47922522	47935176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUSG00000092607.10_95037031_95041269_1	chr3	-	817	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	53	184	-19	0	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1291	False	NA	-24	True	AATAAA	-27	NA	95041269	95037030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000093445.8_137627440_137638764_1	chr5	+	2429	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	57	592	0	263	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTGTGCGTGTGTG	2241	False	NA	28	True	TATAAA	-16	NA	137627439	137638764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
ENSMUSG00000093594.2_147878312_147894269_1	chr4	-	369	4	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	28	-11536	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	37.5440482041502	79	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTGTTGGTTTTTT	9499	False	NA	NA	False	NA	NA	NA	147894269	147878311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr4_-_147878372_147880114_147880185_147891546_147891641_147894124
ENSMUSG00000093622.2_71141659_71143181_1	chr17	+	527	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	-142	0	142	multi-exon	FALSE	canonical	3	64	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTCTATCTTTTTTTT	280	False	NA	138	True	AATACA	-14	NA	71141658	71143181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_71141798_71142793
ENSMUSG00000093803.6_124199683_124202493_1	chr9	+	950	7	NNC	ENSMUSG00000093803.6	novel	4016	11	NA	NA	-734	1097	at_least_one_novel_splicesite	FALSE	canonical	3	161	junction_1	10.1434160364686	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGGTGCACAGTCAGG	NA	False	NA	20	True	AATAAA	-21	NA	124199682	124202493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_+_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093904.3_127660891_127672594_1	chr8	-	1432	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-4	3474	0	845	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	2370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCAGTTGCTACT	NA	False	NA	-20	True	ATTAAA	-19	NA	127672594	127660890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ENSMUSG00000093904.3_127661318_127672594_1	chr8	-	1005	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-4	3901	0	418	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	2241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTCTCGTTTACTTAAGA	NA	False	NA	NA	False	ATTAAA	-14	NA	127672594	127661317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ENSMUSG00000093904.3_127661536_127672594_1	chr8	-	787	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-4	4119	0	200	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATGGATTTCCGTTTGT	NA	False	NA	NA	False	TATAAA	-19	NA	127672594	127661535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ENSMUSG00000093930.3_120151982_120169618_1	chr13	+	3304	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-18	178	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000094365.2_30340426_30349569_1	chr7	-	1611	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	173	0	0	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3784	False	NA	-14	True	AATAAA	-16	NA	30349569	30340425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUSG00000094475.8_174846538_175443705_1	chr2	+	864	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	174846537	175443705	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
ENSMUSG00000094475.8_174846538_175444233_1	chr2	+	1392	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	1039	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	248	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	174846537	175444233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
ENSMUSG00000094475.8_174846538_175444459_1	chr2	+	461	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.363654119317	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174846537	175444459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094786.2_177156537_177200358_1	chr2	+	460	5	Fusion	ENSMUSG00000078866.11_ENSMUSG00000094786.2	novel	794	4	NA	NA	11	-304	multi-exon	FALSE	canonical	3	142	junction_1	41.6833300013327	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177156536	177200358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr2_+_177156642_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_177190008_177199955_1	chr2	+	1150	3	ISM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	-100	1309	0	-707	5prime_fragment	FALSE	canonical	3	122	junction_1	63.5	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGAGTTCGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	177190007	177199955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr2_+_177190111_177198701_177198829_177199035
ENSMUSG00000094786.2_177190008_177199955_2	chr2	+	1205	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-707	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGAGTTCGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	177190007	177199955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
ENSMUSG00000094786.2_177190008_177200358_2	chr2	+	403	4	FSM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	-100	906	0	-304	multi-exon	FALSE	canonical	3	122	junction_1	52.0405824546788	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177190007	177200358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_177190008_177200358_4	chr2	+	458	5	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-304	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	35.4436171968946	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177190007	177200358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000095193.3_95172346_95183158_1	chr17	+	488	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	2591	0	674	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATCAATGTGGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	95172345	95183158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUSG00000095304.10_25888828_25903369_1	chr14	-	502	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	155	898	155	0	multi-exon	FALSE	canonical	3	143	junction_3	28.7170100579198	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25903369	25888827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
ENSMUSG00000095325.4_33100973_33110579_1	chr17	-	2520	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	37	2780	-15	1863	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCCTTTGTCATGGTGT	NA	False	NA	-5	True	NA	NA	NA	33110579	33100972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
ENSMUSG00000095362.8_177470784_177482116_1	chr2	-	4381	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	-2800	-5	2800	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	177482116	177470783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177472273_177482116_1	chr2	-	2892	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	-1311	-5	1311	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCTTGGTCATGATGT	NA	False	NA	-4	True	NA	NA	NA	177482116	177472272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177474778_177482116_1	chr2	-	387	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	1194	-5	-1194	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177482116	177474777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475004_177482116_1	chr2	-	1315	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-1018	-5	1018	multi-exon	FALSE	canonical	3	312	junction_1	213.5	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	177482116	177475003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475263_177482116_1	chr2	-	1056	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-759	-5	759	multi-exon	FALSE	canonical	3	312	junction_1	213.5	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTTGCATTTGTTCA	NA	False	NA	-5	True	NA	NA	NA	177482116	177475262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475530_177482116_1	chr2	-	789	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-492	-5	492	multi-exon	FALSE	canonical	3	312	junction_1	213.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	-12	True	NA	NA	NA	177482116	177475529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095403.9_21090243_21122607_1	chr8	+	1211	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17370	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.45082582425	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	5842	False	NA	NA	False	AATAAA	-14	NA	21090242	21122607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21118865_21122391
ENSMUSG00000095403.9_21090243_21123101_1	chr8	+	1343	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17370	314	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	55.8350745997134	203	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5842	False	NA	NA	False	AATAAA	-15	NA	21090242	21123101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107822_21112754_21113050_21122628
ENSMUSG00000095403.9_21090243_21123101_2	chr8	+	1176	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17370	314	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	111.931526687822	164	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5842	False	NA	NA	False	AATAAA	-15	NA	21090242	21123101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107655_21112754_21113050_21122628
ENSMUSG00000095567.9_156330326_156331880_1	chr4	+	590	3	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	9859	193	4148	-180	3prime_fragment	FALSE	canonical	3	2038	junction_1	7	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTTTT	NA	False	NA	25	True	GATAAA	-20	NA	156330325	156331880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr4_+_156330424_156331133_156331221_156331475
ENSMUSG00000095595.3_55171254_55186379_1	chr12	+	1412	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	2510	0	-2510	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55171253	55186379	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
ENSMUSG00000095648.8_175885147_175895215_1	chr2	-	1284	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3597	946	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175895215	175885146	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095677.3_6914001_6923228_1	chr17	-	661	6	NNC	ENSMUSG00000095677.3	novel	3545	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	3546.68603628796	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCATGTAGCTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	6923228	6914000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_6914260_6914426_6914529_6917085_6917164_6917501_6917626_6920709_6920752_6923172
ENSMUSG00000095687.3_8347426_8366620_1	chr17	-	966	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	309	518	-3	-518	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366620	8347425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUSG00000095909.3_66261294_66271971_1	chr13	+	439	4	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	0	1321	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	53.2436746373585	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261293	66271971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66271801
ENSMUSG00000095909.3_66261294_66325951_1	chr13	+	523	5	Fusion	ENSMUSG00000113156.2_ENSMUSG00000095909.3	novel	1525	4	NA	NA	0	37	multi-exon	FALSE	canonical	3	19	junction_4	48.2415795761291	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66261293	66325951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840
ENSMUSG00000095909.3_66261294_66328219_1	chr13	+	1603	6	Fusion	ENSMUSG00000113156.2_ENSMUSG00000095909.3	novel	1525	4	NA	NA	0	2305	multi-exon	FALSE	canonical	3	19	junction_4	47.642837866777	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	6	True	AATAAA	-24	NA	66261293	66328219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327712
ENSMUSG00000095990.2_17341677_17367100_1	chr17	+	2376	7	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	107.197636789872	252	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_17341800_17358277_17358383_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
ENSMUSG00000095990.2_17341677_17367100_2	chr17	+	2271	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	117.263122933001	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
ENSMUSG00000096199.3_4284027_4286698_1	chr12	+	588	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	3252	0	-3252	multi-exon	FALSE	canonical	3	212	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACTACTATCATCATTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	4284026	4286698	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_4284279_4286362
ENSMUSG00000096370.9_4835180_4843889_1	chr19	-	1711	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	40	859	-1	1	multi-exon	TRUE	canonical	3	26	junction_3	29.8923996285938	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTGCTTTGAGAAA	NA	False	NA	-3	True	AATAAA	-17	NA	4843889	4835179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
ENSMUSG00000096401.3_20697895_20723355_1	chr8	+	1193	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-90	-3911	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCGAGAGCCTCATCTTT	NA	False	NA	NA	False	AGTAAA	-34	NA	20697894	20723355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
ENSMUSG00000096472.3_21199762_21202449_1	chr9	-	1212	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	155	56	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGTTTTGTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	21202449	21199761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21200629_21202104
ENSMUSG00000096696.2_17284375_17309890_1	chr17	+	2247	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.978110947497	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
ENSMUSG00000096696.2_17284375_17309890_2	chr17	+	2415	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.1955224787385	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309174
ENSMUSG00000096780.8_6723808_6744541_1	chr17	-	1094	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2348	False	NA	NA	False	AATAAA	-15	NA	6744541	6723807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723808_6744541_2	chr17	-	761	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	63	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2348	False	NA	NA	False	AATAAA	-15	NA	6744541	6723807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723929_6744541_1	chr17	-	640	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723929_6744541_2	chr17	-	973	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096856.8_81484893_81500334_1	chr10	+	1874	4	FSM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	0	2861	0	269	multi-exon	FALSE	canonical	2	7	junction_1	17.4610678049451	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATACTAATTGTCATTC	NA	False	NA	NA	False	ATTAAA	-20	NA	81484892	81500334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756
ENSMUSG00000096856.8_81484893_81500609_1	chr10	+	2149	4	FSM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	0	2586	0	544	multi-exon	FALSE	canonical	2	7	junction_1	17.4610678049451	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATACTGCCATCTATTT	NA	False	NA	NA	False	AATAAA	-20	NA	81484892	81500609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756
ENSMUSG00000096910.3_33508518_33522818_1	chr17	+	2391	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	3397	0	-323	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTAACAGGGCTACAGTG	NA	False	NA	NA	False	AGTAAA	-11	NA	33508517	33522818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
ENSMUSG00000096910.3_33508518_33523643_1	chr17	+	3216	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	2572	0	502	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTCGATCCTAGAATCT	NA	False	NA	6	True	AATAAA	-25	NA	33508517	33523643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
ENSMUSG00000096917.3_57941088_57963296_1	chr8	+	717	4	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	0	1385	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	50.4799189997589	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGTCTATTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	57941087	57963296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_57941228_57943373_57943502_57959561_57959836_57963121
ENSMUSG00000097195.11_88403105_88404941_1	chr9	-	935	4	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
ENSMUSG00000097195.11_88403105_88404941_2	chr9	-	1574	2	NNC	ENSMUSG00000097195.11	novel	1636	2	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr9_-_88403736_88403998
ENSMUSG00000097195.11_88403105_88404941_3	chr9	-	1002	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	674	2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
ENSMUSG00000097195.11_88403105_88404941_5	chr9	-	671	5	NIC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_88403105_88404941_6	chr9	-	1266	3	NIC	ENSMUSG00000097195.11	novel	1534	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404435_88404536
ENSMUSG00000097239.8_101297490_101308232_1	chr11	-	1482	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	209	-175	0	175	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTGGTATAGTTGCTT	NA	False	NA	-1	True	ATTAAA	-40	NA	101308232	101297489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000097313.3_29757691_29765344_1	chr16	-	268	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-10	31349	-9	5507	5prime_fragment	FALSE	canonical	3	93	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAATTATTAAATGATC	NA	False	NA	NA	False	NA	NA	NA	29765344	29757690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr16_-_29757886_29765271
ENSMUSG00000097415.3_75418786_75431847_1	chr7	-	1380	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	-724	0	0	multi-exon	FALSE	canonical	3	19	junction_1	6.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTAGTGGTCTTGCCC	NA	False	NA	0	True	NA	NA	NA	75431847	75418785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_75419986_75430372_75430505_75431799
ENSMUSG00000097483.3_66651224_66667587_1	chr13	-	1161	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	364	-6	0	0	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
ENSMUSG00000097519.3_57401349_57416703_1	chr1	-	986	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	2968	0	-2968	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGGCTACACAATGCT	NA	False	NA	NA	False	NA	NA	NA	57416703	57401348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr1_-_57401923_57414406_57414679_57416563
ENSMUSG00000097532.3_95334642_95338400_1	chr3	+	896	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-340	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334641	95338400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097532.3_95334982_95338400_1	chr3	+	852	4	NNC	ENSMUSG00000097532.3	novel	2559	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	55.6437078403499	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334981	95338400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_+_95335007_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097537.3_11021230_11041196_1	chr16	+	478	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	0	2464	0	-283	multi-exon	FALSE	canonical	1	6	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATCTTCAATGCTCTA	9699	False	NA	NA	False	AATAAA	-19	NA	11021229	11041196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_11021612_11041100
ENSMUSG00000097624.3_15451843_15461045_1	chr17	-	1192	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461045	15451842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUSG00000097639.3_41443239_41447627_1	chr3	-	1038	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	-2	1125	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_41444172_41447522
ENSMUSG00000097768.3_93589024_93591789_1	chr16	-	1687	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	63	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_-_93590271_93590397_93590505_93591456
ENSMUSG00000097772.8_100568381_100577374_1	chr5	-	926	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	20	-320	0	320	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTTTTGGTAAAGATTTA	NA	False	NA	-1	True	ATTAAA	-17	NA	100577374	100568380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUSG00000097929.10_105303252_105348367_1	chr12	+	1095	3	NNC	ENSMUSG00000097929.10	novel	2876	4	NA	NA	0	-1822	intron_retention	FALSE	canonical	3	11	junction_1	10.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATTTGGAGAAGCAC	NA	False	NA	30	True	AATAAA	-24	NA	105303251	105348367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr12_+_105303253_105303488_105303819_105347603
ENSMUSG00000098090.9_95057540_95101578_1	chr17	+	453	5	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057539	95101578	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ENSMUSG00000098234.8_10012250_10014343_2	chr1	-	1709	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	-895	2	0	0	multi-exon	FALSE	canonical	3	538	junction_1	75	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014343	10012249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_10012381_10012547_10012617_10012834
ENSMUSG00000098274.8_55786784_55791798_1	chr16	+	531	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	146	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	4411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUSG00000098318.8_134906096_134928539_1	chr6	+	399	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	41	5222	0	1	multi-exon	FALSE	canonical	3	145	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTCTGGGCTCTGT	8006	False	NA	25	True	NA	NA	NA	134906095	134928539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_134906224_134928268
ENSMUSG00000098789.8_119857974_119863075_1	chr2	+	1267	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_2	chr2	+	1286	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_3	chr2	+	1190	6	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	57.5902769571392	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862321_119862482_119862594
ENSMUSG00000099370.2_75554753_75563059_5	chr3	-	922	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6411250864577	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563059	75554752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_75555289_75563059_1	chr3	-	1247	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-142	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_2	79.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGTGGTCTCCATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	75563059	75555288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_75555677_75563059_2	chr3	-	859	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-530	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_2	79.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGGCTATTAGACATT	NA	False	NA	NA	False	ATTAAA	-2	NA	75563059	75555676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099474.2_30841415_30844171_1	chr17	-	985	3	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1708	0	1708	0	3prime_fragment	FALSE	canonical	3	280	junction_2	76	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30844171	30841414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr17_-_30841669_30843173_30843588_30843854
ENSMUSG00000099474.2_30841415_30846521_1	chr17	-	792	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-642	0	at_least_one_novel_splicesite	FALSE	canonical	3	177	junction_2	127.5	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30846521	30841414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_30841669_30843173_30843588_30846397
ENSMUSG00000099474.2_30841415_30846667_1	chr17	-	938	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-788	0	at_least_one_novel_splicesite	FALSE	canonical	3	177	junction_2	127.5	229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30846667	30841414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_30841669_30843173_30843588_30846397
ENSMUSG00000099689.7_29607942_29615242_1	chr7	+	1624	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	0	990	0	-990	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGGCATTGTTTGACT	NA	False	NA	NA	False	AATAAA	-20	NA	29607941	29615242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
ENSMUSG00000101549.2_132196244_132206195_1	chr1	-	498	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6210	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCTTCTTAATTTCGAG	NA	False	NA	2	True	AATAAA	-20	NA	132206195	132196243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101878.2_116150592_116151475_1	chr6	+	815	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-106	391	multi-exon	FALSE	canonical	3	128	junction_1	0	755	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	116150591	116151475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chr6_+_116150893_116150961
ENSMUSG00000101892.2_57885666_57897711_1	chr15	-	1418	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_4	316.693795329179	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	-20	True	AATAAA	-29	NA	57897711	57885665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895291_57895476_57897479
ENSMUSG00000102252.6_59632862_59654859_1	chr7	-	1313	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	619	0	-612	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	1430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	-9	True	AATAAA	-18	NA	59654859	59632861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ENSMUSG00000102428.2_37901409_37974926_1	chr18	+	2304	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	2776	0	2583	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37901408	37974926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000103766.6_88186748_88204203_1	chr3	-	544	5	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103766.6	novel	600	2	NA	NA	0	3316	multi-exon	FALSE	canonical	3	15	junction_1	78.2719617743161	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCACCTCTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	88204203	88186747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr3_-_88186818_88187238_88187460_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000105260.2_41432012_41447627_1	chr3	-	842	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	0	0	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447627	41432011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000106223.2_41461644_41482909_1	chr3	-	862	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482909	41461643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
ENSMUSG00000106223.2_41476639_41482909_1	chr3	-	514	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_41476891_41477378_41477565_41482833
ENSMUSG00000106223.2_41476639_41482909_2	chr3	-	528	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr3_-_41476891_41477364_41477565_41482833
ENSMUSG00000106918.4_31771316_31779988_1	chr5	+	426	3	NIC	ENSMUSG00000106918.4	novel	478	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1111.5	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771315	31779988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_31771367_31773724_31773832_31779720
ENSMUSG00000106943.3_74253744_74254998_1	chr5	+	787	2	NIC	ENSMUSG00000106943.3	novel	575	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	119	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253743	74254998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr5_+_74254081_74254548
ENSMUSG00000107142.2_31643977_31646485_1	chr5	-	1287	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1193	0	intron_retention	FALSE	canonical	3	124	junction_1	0	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	729	False	NA	-2	True	NA	NA	NA	31646485	31643976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_31645206_31646427
ENSMUSG00000107142.2_31643977_31646485_2	chr5	-	1415	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1193	0	intron_retention	FALSE	canonical	3	94	junction_1	0	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	729	False	NA	-2	True	NA	NA	NA	31646485	31643976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr5_-_31645334_31646427
ENSMUSG00000107283.4_31298279_31311566_2	chr5	-	1414	8	FSM	ENSMUSG00000107283.4	ENSMUST00000154241.8	1724	8	29	281	0	161	multi-exon	FALSE	canonical	3	233	junction_7	57.209960599853	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTCTGTGTCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	31311566	31298278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUSG00000108111.2_90495813_90496469_1	chr6	+	578	2	NNC	ENSMUSG00000108111.2	novel	661	2	NA	NA	32438	7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGTGTAATTATACAA	9392	False	NA	NA	False	AATACA	-18	NA	90495812	90496469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr6_+_90495862_90495940
ENSMUSG00000109324.3_44626182_44635786_1	chr7	-	1302	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	206	0	-6	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	3960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635786	44626181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ENSMUSG00000109324.3_44626182_44635786_2	chr7	-	1248	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	130	769	-6	0	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	3976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635786	44626181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUSG00000109511.2_44465724_44480233_1	chr7	+	2507	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	212	3	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCTGTGAGTATGGG	287	False	NA	18	True	AATAAA	-18	NA	44465723	44480233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44465908_44477910
ENSMUSG00000109511.2_44465820_44480233_1	chr7	+	2411	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	308	3	13	0	multi-exon	FALSE	canonical	3	986	junction_1	0	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCTGTGAGTATGGG	383	False	NA	18	True	AATAAA	-18	NA	44465819	44480233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44465908_44477910
ENSMUSG00000110489.2_96535180_96544326_1	chr8	-	321	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212957.2	153	3	-7	-161	-7	0	multi-exon	FALSE	canonical	3	213	junction_1	80.5	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544326	96535179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96535388_96539088_96539129_96544253
ENSMUSG00000110649.2_20555621_20588306_1	chr8	+	1091	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21079	3969	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	4.49691252107735	38	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGGTGTCTGTTAACAA	5310	False	NA	NA	False	NA	NA	NA	20555620	20588306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008
ENSMUSG00000110834.2_124033614_124034127_1	chr9	-	331	2	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	626	10642	-626	internal_fragment	FALSE	canonical	3	133	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124034127	124033613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr9_-_124033817_124033999
ENSMUSG00000111497.2_20978816_20984840_1	chr9	-	757	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
ENSMUSG00000111497.2_20978816_20984840_2	chr9	-	894	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	-38	-175	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
ENSMUSG00000111888.2_14420887_14427107_1	chr10	+	682	2	FSM	ENSMUSG00000111888.2	ENSMUST00000220256.2	1003	2	653	-332	653	332	multi-exon	FALSE	canonical	3	15	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTACGCCTATTTCTGT	NA	False	NA	NA	False	AATAAA	-25	NA	14420886	14427107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_14421099_14426637
ENSMUSG00000112160.2_81919187_81958758_1	chr10	+	718	5	NNC	ENSMUSG00000112160.2	novel	2726	4	NA	NA	0	11708	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	9.08295106229247	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTGTTTCCTTGCCTTC	NA	False	NA	8	True	NA	NA	NA	81919186	81958758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572_81944605_81958320
ENSMUSG00000112400.2_95729305_95733232_2	chr10	+	1091	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729304	95733232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr10_+_95729523_95729937_95730152_95732573
ENSMUSG00000112449.2_55202155_55235125_1	chr12	+	2147	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	266	1233	0	-1233	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2620	False	NA	NA	False	AATAAA	-20	NA	55202154	55235125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
ENSMUSG00000113019.2_74656133_74670580_1	chr13	-	1979	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	-1584	0	1584	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	74670580	74656132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
ENSMUSG00000113047.2_74699969_74711993_1	chr13	-	2885	4	ISM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	382	-2250	0	2060	3prime_fragment	FALSE	canonical	3	33	junction_3	16.8720676464584	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74711993	74699968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857
ENSMUSG00000113081.2_62411380_62423345_1	chr13	+	1533	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	0	278	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	193.294823750893	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGGCCCGTTGTTTAT	NA	False	NA	14	True	AATAAA	-16	NA	62411379	62423345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62422130
ENSMUSG00000113204.2_74753064_74765429_1	chr13	-	3313	5	FSM	ENSMUSG00000113204.2	ENSMUST00000222003.2	1371	5	250	-2192	0	0	multi-exon	FALSE	canonical	3	38	junction_3	23.1786539729985	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGATGTC	5218	False	NA	-5	True	NA	NA	NA	74765429	74753063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
ENSMUSG00000113260.2_65807740_65847000_1	chr13	-	672	4	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6190	29687	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	19.1369334592098	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGATGTCTACATTATA	1640	False	NA	NA	False	NA	NA	NA	65847000	65807739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_65808114_65840427_65840489_65840688_65840816_65846890
ENSMUSG00000113566.2_62245562_62260150_1	chr13	+	1191	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	0	-713	0	289	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
ENSMUSG00000113566.2_62245562_62260150_2	chr13	+	1267	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-359	0	289	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113566.2_62245562_62260150_4	chr13	+	1448	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	0	289	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	227.404680886056	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_62245653_62254561_62254689_62254881_62254943_62258981
ENSMUSG00000113566.2_62245562_62260832_1	chr13	+	1949	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-1041	0	971	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62245561	62260832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113566.2_62245562_62261216_1	chr13	+	2333	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-1425	0	1355	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGTCTATCCATGTAAA	NA	False	NA	8	True	AATAAA	-20	NA	62245561	62261216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113623.2_62549874_62564867_1	chr13	-	1624	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	-10	-981	-10	433	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62564867	62549873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
ENSMUSG00000113623.2_62549874_62564867_2	chr13	-	1548	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-10	433	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	48.0300831655421	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62564867	62549873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_62551118_62555228_62555290_62555482_62555610_62564751
ENSMUSG00000113623.2_62550508_62564867_1	chr13	-	990	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	-10	-347	-10	-201	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATACTGTAGAGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	62564867	62550507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
ENSMUSG00000113626.2_61952080_62009951_1	chr13	+	2593	5	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	0	462	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	29.7772983999556	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952079	62009951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62009023_62009191
ENSMUSG00000113760.2_66098405_66186860_1	chr13	+	553	3	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-1201	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	37	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	66098404	66186860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66098504_66186206_66186334_66186533
ENSMUSG00000113760.2_66180023_66187927_1	chr13	+	435	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	0	134	0	-134	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCCTCTCACAATTG	NA	False	NA	NA	False	NA	NA	NA	66180022	66187927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
ENSMUSG00000113902.2_101934361_101941970_1	chr12	-	303	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	216	-8	216	0	multi-exon	FALSE	canonical	3	411	junction_2	787	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATTTAAAGTGTGATT	NA	False	NA	-9	True	AATAAA	-20	NA	101941970	101934360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_101934470_101935751_101935894_101941918
ENSMUSG00000113949.2_80438726_80451618_1	chr10	+	1759	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438725	80451618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_80439086_80451618_1	chr10	+	1797	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	295	-821	295	1	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80439085	80451618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113955.2_65639603_65651601_1	chr13	-	518	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6994	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651601	65639602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_65639775_65644415_65644605_65651444
ENSMUSG00000114353.2_66941316_66950624_1	chr13	-	564	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	-100	0	100	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTATGAATGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	66950624	66941315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114426.2_66711974_66724696_1	chr13	+	465	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-9011	721	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_3	16.3299316185545	211	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	5534	False	NA	11	True	NA	NA	NA	66711973	66724696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66724529
ENSMUSG00000114616.2_66439439_66448940_1	chr13	+	531	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	-4287	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.5	85	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTTTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	66439438	66448940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66448747
ENSMUSG00000114616.2_66439439_66453252_1	chr13	+	507	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	25	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	22.5	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439438	66453252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66453083
ENSMUSG00000114689.2_98849582_98854188_1	chr13	-	711	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854188	98849581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_98850076_98852942_98853093_98854121
ENSMUSG00000114777.2_66667717_66674703_1	chr13	+	565	3	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6326	-2705	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	19.5	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	66667716	66674703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66667826_66674049_66674177_66674374
ENSMUSG00000114777.2_66667717_66675374_1	chr13	+	1236	3	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6326	-2034	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	19.5	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTTTTATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	66667716	66675374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_+_66667826_66674049_66674177_66674374
ENSMUSG00000114839.2_66888693_66901047_1	chr13	-	584	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11670	-2258	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	69.5	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	4299	False	NA	NA	False	NA	NA	NA	66901047	66888692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66889043_66889243_66889330_66900899
ENSMUSG00000115219.3_20430343_20437619_1	chr16	+	992	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	142	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGGCTTCTAGGATT	5899	False	NA	20	True	AATACA	-30	NA	20430342	20437619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUSG00000115338.3_51181963_51189469_1	chr14	+	1338	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	204	1400	0	1118	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTGTGTGGTTCGGTA	9234	False	NA	5	True	AATAAA	-17	NA	51181962	51189469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUSG00000115423.3_136723191_136733087_1	chr2	-	722	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	0	222	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733087	136723190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000115423.3_136723333_136733087_1	chr2	-	580	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	142	222	-142	multi-exon	FALSE	canonical	3	323	junction_1	8.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTAATCTATGCTGGT	NA	False	NA	-21	True	AATAAA	-22	NA	136733087	136723332	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000115483.2_43132493_43163125_1	chr14	+	1430	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	-182	343	0	-336	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43132492	43163125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115958.2_133251704_133257460_1	chr1	+	581	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr1_+_133251787_133254947_133255079_133257093
ENSMUSG00000116295.2_97057873_97065124_1	chr15	-	1723	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	941	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGTTGCTTGCTTGCT	NA	False	NA	-5	True	NA	NA	NA	97065124	97057872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116295.2_97058660_97065124_1	chr15	-	792	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	154	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTATTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065124	97058659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_97059277_97064383_97064492_97065057
ENSMUSG00000116295.2_97058660_97065124_2	chr15	-	920	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	-410	0	154	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTATTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065124	97058659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ENSMUSG00000116295.2_97058660_97065124_4	chr15	-	808	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	1	-154	0	154	multi-exon	FALSE	canonical	3	219	junction_1	244.5	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTATTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065124	97058659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_97059277_97064383_97064508_97065057
ENSMUSG00000116295.2_97058660_97065124_5	chr15	-	936	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	154	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTATTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065124	97058659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116295.2_97058814_97065124_3	chr15	-	638	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065124	97058813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_97059277_97064383_97064492_97065057
ENSMUSG00000116295.2_97058814_97065124_4	chr15	-	782	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065124	97058813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116564.2_17594834_17613996_1	chr17	+	1792	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	263	1165	0	-1165	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTCCAAGGTCTGATTA	NA	False	NA	NA	False	AATAAA	-16	NA	17594833	17613996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116564.2_17594834_17614230_1	chr17	+	2026	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	263	931	0	-931	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATCTGTAGTTCTCTCT	NA	False	NA	8	True	AATAAA	-17	NA	17594833	17614230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116802.2_17455134_17486602_1	chr17	+	2471	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	0	-277	0	277	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCCCAAGTATGCTGCTC	6224	False	NA	15	True	NA	NA	NA	17455133	17486602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
ENSMUSG00000116875.2_24348144_24349784_1	chr16	+	1526	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	0	672	multi-exon	FALSE	non_canonical	1	15	junction_1	0	694	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTACCAACTAGCTAATAAA	NA	False	NA	NA	False	AATAAA	-40	NA	24348143	24349784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	Genic_Genomic_chr16_+_24348184_24348298
ENSMUSG00000116947.2_93811735_93815011_1	chr16	+	1366	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_2	43.5	248	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_93811735_93815011_2	chr16	+	1045	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	274	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_93811735_93815011_4	chr16	+	967	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	67.5	138	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_93811971_93812713_93813006_93814572
ENSMUSG00000116947.2_93811859_93815011_2	chr16	+	921	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-441	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2423	False	NA	17	True	NA	NA	NA	93811858	93815011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
ENSMUSG00000117358.2_74826660_74834386_1	chr17	-	381	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834386	74826659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr17_-_74826911_74830509_74830574_74834320
ENSMUSG00000117869.2_35686465_35690939_1	chr18	+	719	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	41	430	0	4	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATTTCATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	35686464	35690939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUSG00000117869.2_35686465_35691267_1	chr18	+	1047	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	41	102	0	-102	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTATGTGTAGGT	NA	False	NA	NA	False	NA	NA	NA	35686464	35691267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUSG00000118346.2_8749890_8751817_1	chr19	-	779	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	97.0090201991547	175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr19_-_8750148_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUSG00000118346.2_8749890_8751817_2	chr19	-	1735	2	ISM	ENSMUSG00000118346.2	ENSMUST00000235756.2	499	3	-8	0	-8	0	intron_retention	FALSE	canonical	3	253	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	ISM_chr19_-_8750199_8750391
ENSMUSG00000118346.2_8749890_8751817_3	chr19	-	695	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	96.6885032807245	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_8750199_8750391_8750471_8750868_8751057_8751698
ENSMUSG00000118346.2_8749890_8751817_4	chr19	-	642	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
ENSMUSG00000118664.1_39473062_39618155_2	chr8	+	1472	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	63	1212	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39473061	39618155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118664.1_39473062_39618338_1	chr8	+	1655	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	63	1029	0	183	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGTTATTCTTCTTC	NA	False	NA	21	True	TATAAA	-21	NA	39473061	39618338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118666.1_66427983_66439283_1	chr13	-	2720	4	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7318	967	intron_retention	FALSE	non_canonical	0	0	junction_1	32.9983164553722	237	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1876	False	NA	-1	True	NA	NA	NA	66439283	66427982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66430407_66431570_66431632_66431832_66431958_66439173
ENSMUSG00000118666.1_66427983_66439283_2	chr13	-	2636	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7318	967	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	30.4415423393756	269	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1876	False	NA	-1	True	NA	NA	NA	66439283	66427982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NNC_chr13_-_66429686_66429768_66430404_66431569_66431631_66431830_66431958_66439173
ENSMUST00000000001.5	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUST00000000028.14	chr16	-	2143	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	120.274616521947	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCTGTGATCTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	18630722	18599196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
ENSMUST00000000090.8	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	3038	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	377	False	NA	22	True	AATAAA	-22	NA	57428561	57439709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ENSMUST00000000137.8	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUST00000000175.6	chr9	-	1231	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	1579	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515112	50507656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
ENSMUST00000000287.9	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUST00000000304.14	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189378	31204200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUST00000000305.7	chr10	-	1308	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000000317.13	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUST00000000335.12	chr16	-	1397	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGGG	3888	False	NA	NA	False	AAAAAG	-9	NA	18245354	18226293	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUST00000000348.15	chr3	-	1594	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301857	116282611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUST00000000349.11	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306718	116343630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUST00000000365.3	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUST00000000388.15	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	41.5204843093617	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496886	6546744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUST00000000394.14	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUST00000000451.14	chr6	-	3070	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8144	False	NA	0	True	AATAAA	-43	NA	115653596	115595529	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
ENSMUST00000000466.13	chr4	-	1888	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTATGTTGTTACATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	86588297	86574801	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ENSMUST00000000727.4	chr10	-	3180	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACTGGACTGTTGTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	128532133	128513043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
ENSMUST00000000746.12	chr10	+	1676	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCTGGTGTGGTGTGTG	5591	False	NA	29	True	AATATA	-21	NA	77885675	77899456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
ENSMUST00000000756.6	chr8	+	780	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	7473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUST00000000759.9	chr8	-	2140	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ENSMUST00000000793.13	chr14	-	2016	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	1731	False	NA	-7	True	AATAAA	-17	NA	70680887	70676196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
ENSMUST00000000804.7	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUST00000000895.13	chr2	-	1829	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	10.0840220150494	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	7311	False	NA	-15	True	AATAAA	-24	NA	154400786	154386318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUST00000000924.13	chr10	-	2288	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5056	False	NA	-3	True	ATTAAA	-17	NA	75768336	75759055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUST00000000925.10	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ENSMUST00000000940.15	chr5	+	2243	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATGTTTAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	135398806	135405652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUST00000000958.9	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ENSMUST00000000985.7	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_4	29.1475598792348	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598297	54607130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUST00000001042.10	chr3	+	2027	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383453	90395686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ENSMUST00000001080.16	chr11	-	2367	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGGAATGTTATTC	NA	False	NA	0	True	AATATA	-32	NA	51541669	51533889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
ENSMUST00000001081.10	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUST00000001083.4	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	3533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51510979_51513311_51513418_51513918
ENSMUST00000001109.11	chr5	-	1907	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_12	65.1670929227321	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTCTTACTATTCTTT	NA	False	NA	0	True	AATAAA	-24	NA	34794533	34790985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUST00000001127.11	chr11	+	2054	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1635	False	NA	18	True	ATTAAA	-15	NA	78403018	78413562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUST00000001148.11	chr10	-	2013	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1236	False	NA	-3	True	AATAAA	-18	NA	76797622	76597690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUST00000001155.11	chrX	+	2358	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	0	0	0	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6273	False	NA	23	True	NA	NA	NA	20714781	20726758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUST00000001156.8	chrX	-	1636	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATATTGTGAAATAT	NA	False	NA	73	True	AATAGA	-13	NA	20797794	20791692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
ENSMUST00000001162.10	chrX	-	636	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATCACATAGTCCTTT	NA	False	NA	-14	True	ATTAAA	-14	NA	20828239	20818167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
ENSMUST00000001186.11	chr6	-	885	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7646	False	NA	1	True	ATTAAA	-29	NA	86661504	86652132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUST00000001187.15	chr6	-	2002	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	4606	False	NA	-2	True	ATTAAA	-18	NA	86770566	86713822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
ENSMUST00000001242.9	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4131	False	NA	-2	True	AATAAA	-29	NA	78005616	77997899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUST00000001258.15	chr17	+	3586	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	0	0	0	0	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	420	False	NA	36	True	AATAAA	-20	NA	56610320	56630486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000001279.15	chr7	-	2167	10	FSM	ENSMUSG00000001247.17	ENSMUST00000001279.15	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672889	30657199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ENSMUST00000001304.9	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	5117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUST00000001339.6	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUST00000001347.7	chr11	+	1394	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359000	101362679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUST00000001416.8	chr18	-	1989	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	-2	True	AATAAA	-16	NA	36916258	36899580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUST00000001452.14	chr3	+	1977	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	3418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3804	False	NA	23	True	ATTAAA	-15	NA	88204422	88229074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUST00000001485.10	chr11	+	1708	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	873	False	NA	10	True	NA	NA	NA	96932385	96940039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUST00000001513.8	chr18	+	1758	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523786	67535819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
ENSMUST00000001559.11	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUST00000001565.15	chr17	-	1679	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCGGCTTCAGACGTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	35984631	35978621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
ENSMUST00000001566.10	chr17	-	2649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	0	0	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	10438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	-7	True	AATAAA	-16	NA	36149198	36144812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ENSMUST00000001569.15	chr17	+	1825	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134121	36143683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUST00000001592.15	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
ENSMUST00000001715.10	chr10	-	1880	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617248	75609948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
ENSMUST00000001716.8	chr10	-	649	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	12	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609248	75607066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75607341_75608571_75608748_75609049
ENSMUST00000001724.12	chr1	-	2258	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ENSMUST00000001806.10	chr11	+	2138	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3511	False	NA	25	True	ATTAAA	-16	NA	100973390	100977445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUST00000001809.15	chr15	-	2817	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	0	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	2629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUST00000001834.4	chr10	-	2009	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	1106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUST00000001836.11	chr10	+	2572	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACCTCACTTTGACT	NA	False	NA	8	True	AATAAA	-19	NA	85707694	85724960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUST00000001845.13	chr7	-	1600	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	8309	False	NA	-8	True	NA	NA	NA	29898236	29886366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
ENSMUST00000001900.9	chr5	-	1364	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	0	0	0	0	multi-exon	TRUE	canonical	3	167	junction_7	40.248209492435	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5269	False	NA	-13	True	AATACA	-26	NA	143315011	143302243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUST00000001950.12	chr7	-	3788	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2697	False	NA	-5	True	AATAAA	-21	NA	141456224	141435319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
ENSMUST00000002048.8	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	874	False	NA	26	True	NA	NA	NA	105956886	105964438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
ENSMUST00000002064.15	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2211	False	NA	NA	False	AATAAA	-20	NA	126912586	126939004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUST00000002090.3	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5466	False	NA	48	True	AATAAA	-30	NA	72830667	72834432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000002091.6	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	1886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUST00000002112.15	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	507	False	NA	21	True	AGTAAA	-22	NA	19242636	19250070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUST00000002128.14	chr11	+	1368	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6025	False	NA	21	True	ATTAAA	-15	NA	78079255	78083014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUST00000002133.9	chr11	+	1268	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	4	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136571	78146322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78136997_78141841_78142039_78145676
ENSMUST00000002275.15	chr7	+	1969	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44397836	44426939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUST00000002303.12	chr3	+	1202	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696203	104701775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUST00000002327.6	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426751	28447582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUST00000002389.9	chr14	-	2791	15	FSM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	57.2163812707015	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCTGTCTAGGCCAA	802	False	NA	-8	True	AATAAA	-37	NA	55950545	55937475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950391
ENSMUST00000002391.15	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
ENSMUST00000002400.7	chr14	-	1733	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTGTATCTG	2285	False	NA	-8	True	AATAAA	-29	NA	55897965	55895335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ENSMUST00000002403.10	chr14	-	1477	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983147	55976476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
ENSMUST00000002445.10	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980357	57018764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUST00000002452.8	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	2471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024766	57029137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
ENSMUST00000002473.10	chr8	+	1433	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	False	NA	89	True	ACTAAA	-7	NA	71849504	71857263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ENSMUST00000002490.7	chr6	+	491	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569518	39576356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
ENSMUST00000002529.7	chr2	+	3054	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGGGCTTGGGCCTCA	2494	False	NA	28	True	ATTAAA	-16	NA	181243111	181297453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
ENSMUST00000002532.9	chr2	-	1511	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335770	181330214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUST00000002551.5	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	-32	True	NA	8	True	AATAAA	-15	NA	10617774	10628230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUST00000002599.11	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUST00000002625.15	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150171	32145013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUST00000002655.8	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
ENSMUST00000002710.10	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUST00000002733.7	chr17	-	1717	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318288	57310404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUST00000002735.9	chr17	+	983	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
ENSMUST00000002737.7	chr17	+	917	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAACAAAAAACC	371	False	NA	NA	False	NA	NA	NA	57304342	57306322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUST00000002790.14	chr2	+	3641	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747978	166788309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
ENSMUST00000002805.14	chr2	+	1172	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUST00000002808.7	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	False	NA	35	True	NA	NA	NA	76478359	76460241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUST00000002818.9	chr11	+	2541	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905692	5917780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ENSMUST00000002839.9	chr17	-	2926	15	FSM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	37.0099958918988	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1109	False	NA	NA	False	AATAAA	-15	NA	47015928	46993916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUST00000002844.14	chr17	+	1031	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957154	46961058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ENSMUST00000002845.8	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
ENSMUST00000002855.14	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3944	False	NA	17	True	AATAAA	-21	NA	45522195	45533156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000002881.5	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
ENSMUST00000002885.8	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	19803974	19775875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUST00000002902.8	chr9	+	1316	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2369	False	NA	42	True	TATAAA	-28	NA	21323132	21331570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUST00000002925.6	chr16	-	1573	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
ENSMUST00000003029.14	chr8	-	1790	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ENSMUST00000003061.14	chr7	-	2429	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCGCCAGGTTCTCTTCT	3912	False	NA	-5	True	AATAAA	-26	NA	19504472	19490055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ENSMUST00000003066.16	chr7	-	1128	4	FSM	ENSMUSG00000002985.17	ENSMUST00000003066.16	1128	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	4091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432198_19432935
ENSMUST00000003117.15	chr8	+	2084	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	19	True	ATTAAA	-20	NA	72993861	73011229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
ENSMUST00000003135.14	chr1	-	2095	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGCTCTCTGTGTAC	NA	False	NA	-6	True	AATAAA	-27	NA	135186306	135181312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ENSMUST00000003156.15	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	3238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	4445	False	NA	20	True	ATTAAA	-19	NA	79978148	79981652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
ENSMUST00000003183.12	chr7	-	2072	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761841	16738564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUST00000003268.11	chr17	-	2073	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUST00000003290.12	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUST00000003370.14	chr2	+	2092	13	FSM	ENSMUSG00000003283.16	ENSMUST00000109799.8	2092	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCAGCTTCTCTGTCTCC	NA	False	NA	19	True	AATAAA	-29	NA	152950387	152993361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ENSMUST00000003386.7	chr9	+	1288	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	False	NA	26	True	AATAAA	-26	NA	20914033	20920135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUST00000003461.15	chr11	+	4127	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	0	0	0	0	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUST00000003493.9	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_11	125.012497645132	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914313	21925518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUST00000003512.9	chr7	-	1770	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACACCTCTTGATTGCTA	765	False	NA	67	True	AATAAA	-26	NA	44753275	44742413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
ENSMUST00000003513.11	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUST00000003521.10	chr7	-	661	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	0	0	0	0	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	25473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAGTCTCATGTGTC	NA	False	NA	-1	True	AATAAA	-24	NA	44773863	44771802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUST00000003527.10	chr7	-	3513	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28038144	28014318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUST00000003529.9	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUST00000003550.11	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ENSMUST00000003572.10	chr6	+	2380	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ENSMUST00000003575.11	chr8	+	2158	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889072	72906986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUST00000003620.13	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
ENSMUST00000003622.16	chr16	-	1666	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17746083	17743086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
ENSMUST00000003642.7	chr17	-	2322	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956070	46941556	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
ENSMUST00000003655.9	chr19	+	1736	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGATGTCTGTAGTTT	5974	False	NA	30	True	AATAAA	-40	NA	46695896	46729534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUST00000003720.5	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047324	9016032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUST00000003754.8	chr8	-	1431	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7616	False	NA	-12	True	AATAAA	-22	NA	110894838	110869169	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
ENSMUST00000003818.14	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUST00000003857.7	chr7	-	2358	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055444	27041557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUST00000003860.13	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	False	NA	22	True	AATAAA	-22	NA	26932447	26957375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUST00000003906.13	chr8	+	1826	13	FSM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	56.0676055212713	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583617	85595886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000003907.14	chr8	-	2167	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620546	85613021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
ENSMUST00000003910.13	chr8	+	1715	6	FSM	ENSMUSG00000003812.14	ENSMUST00000003910.13	1715	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7711511756497	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	18	True	NA	NA	NA	85635188	85638098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
ENSMUST00000003922.6	chr8	+	685	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCTTTGCTCTTTCCC	NA	False	NA	91	True	AAAACA	-4	NA	85598821	85614085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
ENSMUST00000003946.9	chr8	-	1658	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151681	108139120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ENSMUST00000003947.9	chr8	-	1553	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	False	NA	-2	True	AATAAA	-18	NA	108129838	108114856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
ENSMUST00000004072.10	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	22664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788277	76790514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUST00000004136.10	chr3	-	1311	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876599	107871011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ENSMUST00000004140.11	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	6583	False	NA	-4	True	AATAAA	-18	NA	107925289	107919570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUST00000004172.15	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUST00000004200.9	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUST00000004203.6	chr9	+	1670	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799470	20803474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUST00000004206.10	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	1860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
ENSMUST00000004327.11	chrX	-	2652	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472800	73453088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUST00000004375.16	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	2112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
ENSMUST00000004379.8	chr6	-	1034	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689141	124681343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUST00000004381.14	chr6	+	2281	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639989	124681381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUST00000004396.13	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	1261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	False	NA	37	True	ATTAAA	-19	NA	29467716	29470511	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_29467974_29470065
ENSMUST00000004453.9	chr13	+	1340	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	925	False	NA	NA	False	NA	NA	NA	21496294	21503794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
ENSMUST00000004507.11	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
ENSMUST00000004508.13	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5338	False	NA	NA	False	ATTAAA	-24	NA	6224870	6220368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUST00000004554.14	chr7	+	761	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	14032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656216	12660613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUST00000004565.15	chr1	-	2289	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432524	119398034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUST00000004574.14	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676594	22691138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUST00000004614.15	chr7	+	3591	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568687	12584504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUST00000004646.13	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ENSMUST00000004729.5	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	1938	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGGATGTCCTTGTTT	1908	False	NA	52	True	AATAAA	-35	NA	43093506	43107224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
ENSMUST00000004745.9	chr8	+	1847	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4602	False	NA	16	True	AATAAA	-22	NA	3681169	3692795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
ENSMUST00000004756.14	chr8	+	2244	9	FSM	ENSMUSG00000004637.16	ENSMUST00000004756.14	2244	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	27.9013328534678	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGTCTGAAGTGTAT	NA	False	NA	12	True	AATAAA	-15	NA	115166394	116079447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078376
ENSMUST00000004786.10	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	1768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5515	False	NA	-19	True	ATTAAA	-19	NA	79875629	79871782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUST00000004868.6	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045445	4041479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUST00000004910.12	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266254	85273402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUST00000004955.14	chr11	-	1837	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	242	False	NA	-7	True	AATAAA	-22	NA	61652888	61620479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
ENSMUST00000004965.8	chr16	-	1872	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359612	65336013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ENSMUST00000005003.12	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	-50	True	AATAAA	-33	NA	181669944	181642899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ENSMUST00000005015.10	chr3	-	2099	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGTCTGGATCTCAGA	2299	False	NA	1	True	AATAAA	-27	NA	87792915	87766209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
ENSMUST00000005041.15	chr7	+	2183	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTCATCTGTGTCCA	72	False	NA	33	True	ATTAAA	-23	NA	5065141	5082937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ENSMUST00000005053.14	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
ENSMUST00000005066.9	chr9	-	2436	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	0	0	0	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTGTGGCACACCTT	NA	False	NA	-13	True	AATAAA	-38	NA	64160913	64093051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ENSMUST00000005185.8	chr10	+	603	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	0	0	0	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	2059	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTCCTTAGTTTT	NA	False	NA	23	True	AATATA	-18	NA	78261502	78263456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_78261692_78262760_78262863_78263144
ENSMUST00000005292.15	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	4175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696239	85701463	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000005336.9	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8530	False	NA	-5	True	AATAAA	-17	NA	69572672	69563940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ENSMUST00000005365.15	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036538	69024238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUST00000005371.12	chr11	+	1772	11	FSM	ENSMUSG00000059552.14	ENSMUST00000005371.12	1772	11	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471184	69482699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUST00000005394.13	chr16	+	1996	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATATGGTATGTTGT	NA	False	NA	10	True	AATAAA	-20	NA	18631043	18654011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUST00000005487.12	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUST00000005503.5	chr17	+	4251	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88282489	88298320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
ENSMUST00000005548.8	chr8	+	1569	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820248	75827217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUST00000005583.12	chr7	-	901	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8499	False	NA	-2	True	ATTAAA	-15	NA	24997411	24994473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ENSMUST00000005607.9	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5716	False	NA	23	True	AATAAA	-16	NA	84682135	84696826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUST00000005647.4	chr2	-	1046	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735171	90724979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUST00000005711.6	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	1541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
ENSMUST00000005798.9	chr12	-	1928	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842488	54793133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUST00000005810.9	chr6	-	2085	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294588	83282672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUST00000005826.9	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	18	True	AATAAA	-18	NA	128173602	128198348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUST00000005830.15	chr3	+	1467	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	1237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	4929	False	NA	NA	False	NA	NA	NA	103078970	103086468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUST00000005964.7	chr3	+	1604	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	3614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGTATTCAGAAAACTT	4924	False	NA	NA	False	AATAAA	-18	NA	138148853	138161260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUST00000006029.11	chr15	+	1527	13	FSM	ENSMUSG00000078954.10	ENSMUST00000006029.11	1527	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.837800843019	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84604309_84614744_84614755_84617098_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000006035.13	chr2	+	1377	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849964	155860199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUST00000006123.11	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
ENSMUST00000006137.9	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUST00000006178.5	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853819	15861441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
ENSMUST00000006217.10	chr11	+	1004	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3197	False	NA	21	True	AATAAA	-43	NA	95925710	95938256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
ENSMUST00000006254.6	chr7	-	1416	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGTCTCTTGATTCC	NA	False	NA	-5	True	NA	NA	NA	29931697	29923555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUST00000006286.9	chr11	+	2679	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGACTCCTTTGATGGG	5439	False	NA	27	True	TATAAA	-18	NA	75521813	75539697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ENSMUST00000006353.14	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUST00000006362.4	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ENSMUST00000006381.11	chr4	-	3101	9	FSM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	521.665826343839	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325535	141303372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325393
ENSMUST00000006435.8	chr8	+	2825	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	0	0	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541297	69566363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUST00000006451.8	chr14	-	1842	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATAGTTCTGTCTCTTT	NA	False	NA	-6	True	ATTAAA	-21	NA	51022976	51002871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUST00000006462.14	chr1	-	1817	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	0	0	0	0	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGTGCATTTTGTG	NA	False	NA	1	True	AATAAA	-19	NA	74323897	74318998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ENSMUST00000006467.14	chr1	+	1404	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATTC	7848	False	NA	17	True	NA	NA	NA	74275675	74307146	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000006478.10	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	9257	False	NA	-16	True	AGTAAA	-14	NA	30428965	30427129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000006496.15	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	9979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1264	False	NA	3	True	AATAAA	-18	NA	3706991	3709896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000006523.12	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115631	113117497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUST00000006565.13	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	897	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUST00000006632.8	chr19	+	2558	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	34	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928699	4935425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4929058_4930148_4930427_4933503
ENSMUST00000006692.6	chr8	-	1756	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170161	123160339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
ENSMUST00000006760.3	chr8	+	2189	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2586	False	NA	27	True	AATAAA	-36	NA	123294753	123299867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
ENSMUST00000006764.9	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	2093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
ENSMUST00000006774.11	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUST00000006915.14	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	13	True	TTTAAA	-18	NA	126877800	126882234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUST00000007005.14	chr17	-	2250	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTGGGAGGTATGCA	NA	False	NA	NA	False	AATAAA	-19	NA	13179634	13161776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ENSMUST00000007042.6	chr18	+	1996	20	FSM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTTGGGCATTCC	NA	False	NA	10	True	ATTAAA	-20	NA	36877708	36890692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUST00000007046.9	chr18	+	1823	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868120	36875450	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
ENSMUST00000007130.15	chr9	+	3623	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	895	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120762465	120789573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUST00000007212.9	chr16	+	2961	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470401	20482164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ENSMUST00000007255.13	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278010	35281067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUST00000007266.14	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	243	False	NA	26	True	AATAAA	-20	NA	35201104	35204867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000007482.8	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUST00000007533.15	chr11	+	615	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144532	101148875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
ENSMUST00000007602.15	chr6	+	2515	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUST00000007708.14	chr17	+	2410	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21165572	21186178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ENSMUST00000007747.10	chr17	+	2025	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_6	33.8230690505755	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	16	True	AATAAA	-17	NA	57071777	57076841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUST00000007800.8	chr9	+	4046	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	5814	junction_2	96	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944999	74967595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945244_74959514_74959638_74963916
ENSMUST00000007803.12	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	89.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673648	152622587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152624203_152671346_152672023_152673522
ENSMUST00000007921.9	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51576920_51579374
ENSMUST00000007981.9	chr7	-	1295	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711076	44703036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
ENSMUST00000008036.9	chr9	-	499	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	20153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_61820804_61821169_61821245_61821638
ENSMUST00000008537.10	chr16	-	2858	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	0	0	0	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	-11	True	AATAAA	-21	NA	8490019	8476443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ENSMUST00000008594.9	chr8	+	948	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTTTAAATTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	106587211	106605962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUST00000008748.8	chr3	+	3330	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	0	0	0	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6105	False	NA	NA	False	AATAAA	-26	NA	88461064	88477032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
ENSMUST00000008812.9	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	9461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174651	34170972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUST00000008826.14	chrX	+	799	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	0	0	0	0	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	25386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314417	73316741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000008893.9	chr19	+	1888	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_1	114.751906302248	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3575	False	NA	18	True	AATAAA	-19	NA	4198617	4204034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUST00000008966.13	chr12	-	648	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	28.5	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTCCCCCCCTCCCT	4291	False	NA	0	True	AATAAA	-24	NA	85327209	85319171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85319602_85326764_85326857_85327083
ENSMUST00000009036.11	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	1978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUST00000009039.6	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	3358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	361	False	NA	-25	True	AATAAA	-22	NA	34443368	34440655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
ENSMUST00000009102.9	chr3	+	1456	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAATAA	2560	False	NA	NA	False	NA	NA	NA	95018332	95030362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUST00000009174.15	chr2	-	2858	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTGTATATTAGATATTT	NA	False	NA	-7	True	AATAAA	-20	NA	37249344	37240085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
ENSMUST00000009220.5	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUST00000009392.6	chr7	-	1605	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTGCAGTGCCTTGTA	NA	False	NA	-9	True	TATAAA	-15	NA	142523001	142520565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_142521077_142521636_142522437_142522707
ENSMUST00000009411.9	chr6	+	2801	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897409	47909573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
ENSMUST00000009435.12	chr10	+	2294	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1291	False	NA	32	True	AATAAA	-15	NA	77417553	77434566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ENSMUST00000009530.5	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000009693.15	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
ENSMUST00000009728.13	chr15	+	819	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975534	79997642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUST00000009777.4	chr1	-	871	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955525	192954468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_192955111_192955296
ENSMUST00000010007.9	chr4	+	1142	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	2674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688513	140706504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUST00000010038.10	chr11	-	1896	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340825	59297959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
ENSMUST00000010127.12	chrX	+	2473	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTATGCAGTTTGTGCC	6476	False	NA	6	True	AATAAA	-18	NA	73220864	73252106	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
ENSMUST00000010189.3	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411143	107415872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107412529_107415063
ENSMUST00000010191.13	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446315	107449975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUST00000010192.11	chr9	+	2056	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464840	107470237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUST00000010239.6	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUST00000010241.14	chr19	+	2326	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTTGTTTCCCTCA	8569	False	NA	47	True	GATAAA	-26	NA	8734436	8748286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ENSMUST00000010248.4	chr19	+	748	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	838	junction_1	0	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTCTGTCCTCTCTCTC	6519	False	NA	NA	False	AATAAA	-38	NA	8748359	8749839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8748680_8749411
ENSMUST00000010249.7	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUST00000010348.7	chr9	-	812	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
ENSMUST00000010506.10	chr11	+	1124	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUST00000010520.10	chr14	-	824	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	0	0	0	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	1787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	False	NA	-11	True	AATAAA	-15	NA	55909581	55899719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUST00000010550.12	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664365	54667213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUST00000010736.9	chr17	-	2976	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600664	50586424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUST00000010807.6	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160251	10174238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUST00000010974.9	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	11	True	AATAAA	-16	NA	79400611	79411940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ENSMUST00000011055.7	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4593	False	NA	25	True	AATAAA	-21	NA	102904019	102922989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUST00000011058.9	chr2	-	2506	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	102903858	102851419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ENSMUST00000011733.9	chr17	+	1748	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3933	False	NA	6	True	AATAAA	-16	NA	56293510	56303881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
ENSMUST00000011896.8	chr19	+	1775	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	0	0	0	0	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	5746	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
ENSMUST00000012104.7	chr15	-	2175	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ENSMUST00000012348.9	chr3	-	1064	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2042	False	NA	-4	True	AATAAA	-13	NA	107893769	107889017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ENSMUST00000012440.14	chr17	-	2426	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5822	False	NA	-27	True	AATAAA	-21	NA	46593936	46568796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
ENSMUST00000012540.5	chr6	+	2211	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	0	0	0	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000012627.5	chr6	-	670	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
ENSMUST00000012679.15	chr6	-	4251	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	NA	False	NA	-2	True	TTTAAA	-5	NA	29609886	29540825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUST00000012734.10	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4601	False	NA	13	True	AATAAA	-21	NA	29940992	29962967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
ENSMUST00000013304.8	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
ENSMUST00000013338.14	chr9	-	3924	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	0	0	0	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526579	108480140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
ENSMUST00000013737.13	chr1	-	1623	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	2006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUST00000013766.13	chr5	+	966	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	908	False	NA	12	True	AATAAA	-25	NA	31205978	31211967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUST00000013842.12	chr1	-	2501	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTCTAGAATCT	NA	False	NA	-4	True	AATAAA	-20	NA	172034371	172024294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
ENSMUST00000013845.13	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	3895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923855	31902118	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUST00000013882.10	chr6	-	2072	11	FSM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	56.1066840937869	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777026	106757161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772956_106776951
ENSMUST00000013910.5	chr17	+	1142	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295912	35297780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35296183_35296812_35296939_35297034
ENSMUST00000013966.8	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	52.5	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	7944	False	NA	-8	True	AATAAA	-15	NA	22028468	22024286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_22024976_22025103_22025240_22028405
ENSMUST00000013970.9	chr10	-	3307	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	-4	True	AATAAA	-23	NA	127047424	127032935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
ENSMUST00000014058.11	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	355	False	NA	9	True	ATTAAA	-16	NA	43430458	43434834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUST00000014220.15	chr16	+	838	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238519	32247917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
ENSMUST00000014321.5	chr11	+	1784	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9241	False	NA	10	True	TATAAA	-18	NA	62770280	62786011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUST00000014438.5	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	2107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	36877610	36875384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUST00000014445.7	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442852	4434327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ENSMUST00000014457.15	chr15	-	503	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	8027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938392	35932121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
ENSMUST00000014546.15	chr7	-	1949	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTACTCTTTGCAAACG	NA	False	NA	NA	False	AATAAA	-30	NA	46569717	46538696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUST00000014698.10	chr6	-	1107	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUST00000014750.15	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUST00000014892.8	chr6	-	2984	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9712	False	NA	-4	True	NA	NA	NA	83752795	83745866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUST00000014911.12	chr17	+	1891	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720149	15737689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUST00000015000.12	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ENSMUST00000015017.8	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	33.4388995034227	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ENSMUST00000015124.15	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262433	152246485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUST00000015171.11	chr8	-	2557	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338202	123304980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ENSMUST00000015236.4	chr2	+	722	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	1445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	17	True	NA	NA	NA	25447858	25452094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
ENSMUST00000015239.10	chr2	+	2388	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390761	25395483	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUST00000015256.15	chr6	-	3067	18	FSM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	20	False	6217138	-3	True	AATAAA	-16	NA	6217118	6041217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUST00000015361.11	chrX	+	1544	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599546	70604282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000015391.10	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	False	NA	10	True	AATAAA	-21	NA	53011879	53022060	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUST00000015433.4	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73396105_73396479_73396609_73396930
ENSMUST00000015435.11	chrX	+	2666	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5948	False	NA	15	True	AATAAA	-16	NA	73348603	73355468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUST00000015456.10	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	248	False	NA	5	True	AATAAA	-14	NA	80765906	80768038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUST00000015467.9	chr3	+	2364	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155478	90160919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
ENSMUST00000015605.15	chr17	+	2566	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	9741	False	NA	11	True	AATAAA	-24	NA	34866119	34874048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
ENSMUST00000015719.16	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895343	26918621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
ENSMUST00000015796.9	chr5	-	1230	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799326	5786316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
ENSMUST00000015800.16	chr9	+	2394	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	26141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2167	False	NA	10	True	AATAAA	-20	NA	40712279	40716496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUST00000015812.12	chrX	-	1626	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99670174	99666491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUST00000015858.12	chr3	+	2216	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4318	False	NA	45	True	AATAAA	-31	NA	95222394	95230910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUST00000015893.13	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	False	NA	12	True	ATTAAA	-15	NA	95836589	95852877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUST00000015903.12	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUST00000015934.13	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806542	26803394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUST00000015950.12	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607578	45591394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUST00000016033.9	chr10	+	2029	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289272	93320736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
ENSMUST00000016105.9	chr1	-	2771	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	177624077	177590527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUST00000016115.6	chr14	+	2119	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700293	29715176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
ENSMUST00000016144.12	chr13	+	1598	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUST00000016309.16	chr1	-	2378	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343564	74327405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
ENSMUST00000016396.8	chr2	-	421	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	2015	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	False	NA	-4	True	AATAAA	-22	NA	174305898	174302864	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_174303015_174304292_174304423_174305757
ENSMUST00000016400.9	chr2	-	1441	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	542	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5329	False	NA	0	True	AGTAAA	-17	NA	174280832	174269285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ENSMUST00000016401.15	chr2	-	1553	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314874	174306859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUST00000016452.11	chrX	+	1732	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTTCACACTTTTATTA	NA	False	NA	7	True	AATAAA	-16	NA	36137947	36147875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUST00000016463.4	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059303	36062460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ENSMUST00000016571.8	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	1907	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36451395_36453526_36453617_36454641
ENSMUST00000016678.14	chrX	-	1769	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37545331	37493938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUST00000016703.8	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	4616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUST00000016781.8	chr15	-	1013	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058307	78043662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
ENSMUST00000016897.12	chr15	-	2060	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ENSMUST00000016977.15	chr5	+	638	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946492	100952337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUST00000017153.4	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	False	NA	47	True	AATAAA	-24	NA	164285106	164266166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUST00000017188.14	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8459	False	NA	-7	True	AATAAA	-19	NA	34119979	34101909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
ENSMUST00000017270.8	chr11	-	1542	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100160697	100153712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
ENSMUST00000017288.9	chr2	-	2828	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGGATGTTTTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	51039123	51020449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
ENSMUST00000017354.13	chr11	-	3410	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_19	25.7353919729232	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620261	98595416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
ENSMUST00000017365.15	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	990	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ENSMUST00000017408.14	chr4	+	2790	25	FSM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	0	0	0	0	multi-exon	TRUE	canonical	3	466	junction_4	49.4747234847138	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642885	148666858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUST00000017451.7	chr2	-	1055	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	116.717779279765	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUST00000017548.7	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	9409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000017549.13	chr11	-	2809	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6248	False	NA	0	True	AATAAA	-14	NA	78067501	78056931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ENSMUST00000017567.14	chr11	+	2245	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274128	80287074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUST00000017604.10	chr8	-	744	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	766	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159669	123151514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ENSMUST00000017808.14	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
ENSMUST00000017821.12	chr11	-	2476	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	975	False	NA	-8	True	ATTAAA	-28	NA	79145497	79130197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUST00000017839.3	chr11	+	1984	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
ENSMUST00000017859.10	chr11	+	2197	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	0	0	0	multi-exon	TRUE	canonical	1	46	junction_7	99.2782596518803	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877710	117914837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
ENSMUST00000017867.10	chr2	+	849	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUST00000017891.14	chr11	-	2462	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTATGTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
ENSMUST00000017945.15	chr11	+	1965	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8246	False	NA	18	True	AATAAA	-22	NA	100978125	100983033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000017946.6	chr11	-	3165	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	9795	False	NA	1	True	AATAAA	-29	NA	101010719	100987338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
ENSMUST00000017981.10	chr11	+	2097	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ENSMUST00000018002.13	chr2	+	2248	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859273	162888061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUST00000018274.10	chr11	-	3675	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	776	False	NA	-11	True	AATAAA	-22	NA	120882156	120852574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUST00000018333.13	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653018	143683204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUST00000018383.10	chr11	+	1267	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
ENSMUST00000018430.7	chr11	+	798	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	0	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	4481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTCTGTGTGAAGG	NA	False	NA	23	True	AATAAA	-13	NA	70416211	70418475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
ENSMUST00000018431.13	chr11	-	1159	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560242	70554596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
ENSMUST00000018437.3	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	2685	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70543048_70543612_70543806_70545174
ENSMUST00000018470.10	chr2	+	3013	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163836879	163860508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUST00000018476.14	chr15	-	2914	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155952	34875641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
ENSMUST00000018506.13	chr11	-	2054	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	940	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9666	False	NA	NA	False	AATAAA	-27	NA	106890367	106879454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ENSMUST00000018568.4	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345416	60359580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUST00000018572.11	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ENSMUST00000018685.9	chr11	-	3105	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7435	False	NA	-21	True	AATAAA	-19	NA	97657382	97636440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
ENSMUST00000018713.13	chr11	+	1335	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	5.71547606649408	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTCCAGGCCGCTTTT	8743	False	NA	9	True	AATAAA	-19	NA	69856221	69858711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUST00000018716.10	chr11	+	2006	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
ENSMUST00000018737.13	chr11	-	2300	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3676	False	NA	-2	True	AATAAA	-22	NA	55310906	55285325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ENSMUST00000018744.15	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUST00000018755.10	chr11	-	1182	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
ENSMUST00000018795.13	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ENSMUST00000018803.12	chr11	-	1994	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834812	96828650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
ENSMUST00000018821.9	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7688	False	NA	NA	False	NA	NA	NA	102298370	102293810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000018841.3	chr11	-	1822	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTTCACTGTGAGT	NA	False	NA	0	True	AATAAA	-44	NA	84404348	84313680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ENSMUST00000018871.8	chr11	-	1235	7	FSM	ENSMUSG00000018727.20	ENSMUST00000018871.8	1235	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	88.6372131531422	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ENSMUST00000018880.14	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUST00000018905.12	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUST00000018914.3	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	2460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741670	73738790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUST00000018918.12	chr11	-	1230	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
ENSMUST00000018965.4	chr19	-	1044	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_1	12	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	-5	True	AATAAA	-15	NA	42117498	42111711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_42112288_42113186_42113466_42117309
ENSMUST00000018992.4	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	1060	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ENSMUST00000019050.12	chr11	+	2230	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991788	54022478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ENSMUST00000019065.10	chr11	-	3435	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	-27	True	AATAAA	-13	NA	70300854	70283708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
ENSMUST00000019067.8	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342744	70344553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUST00000019076.10	chr11	+	2198	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCAAGCCTGCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	60822858	60843637	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
ENSMUST00000019169.8	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000019183.14	chr9	+	1746	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGAGGCGTGTTC	NA	False	NA	15	True	AATAAA	-17	NA	108447084	108449973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
ENSMUST00000019198.7	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000019229.15	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266562	118272308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUST00000019231.12	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	0	0	0	0	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTAGATTTTTTTTTC	NA	False	NA	46	True	NA	NA	NA	73340702	73348327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUST00000019323.11	chr5	+	1456	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	1972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	453	False	NA	38	True	AGTAAA	-25	NA	135807333	135819245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ENSMUST00000019354.11	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	890	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUST00000019362.15	chr11	+	2968	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	12	True	AATAAA	-16	NA	69891420	69900937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ENSMUST00000019382.17	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321106	84298328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ENSMUST00000019443.15	chr14	+	3485	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCTCAGCATCCCGGGG	4174	False	NA	38	True	AATAAA	-41	NA	55829164	55841150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
ENSMUST00000019470.14	chr11	+	2664	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUST00000019506.9	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84973323_84976102_84976159_84976244
ENSMUST00000019514.10	chr7	-	2290	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16658039	16649303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUST00000019517.10	chr11	-	1646	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730664	59708620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
ENSMUST00000019576.15	chr8	+	1656	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	1562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441805	84449977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000019577.10	chr8	+	1522	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCATTCTGTAGAC	NA	False	NA	16	True	NA	NA	NA	84379305	84391323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUST00000019614.13	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ENSMUST00000019649.4	chr11	+	1499	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	0	0	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	12987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62441996	62444039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62442422_62442965
ENSMUST00000019677.12	chr4	+	2543	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_1	27.9607860325055	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUST00000019697.9	chr7	-	2187	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCACTGCCCAGTTTT	NA	False	NA	-9	True	AATAAA	-10	NA	30364419	30353140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ENSMUST00000019701.9	chrX	+	2722	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	0	0	0	0	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683024	72687120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
ENSMUST00000019723.8	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUST00000019803.9	chr9	+	834	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGCTCTGGAT	8482	False	NA	29	True	AATAAA	-29	NA	110485570	110540674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
ENSMUST00000019833.5	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9929	False	NA	9	True	ATTAAA	-17	NA	38511757	38516384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_38511946_38516093
ENSMUST00000019854.13	chr3	+	1226	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826812	87830979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000019882.16	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931372	29932815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000019907.8	chr10	-	1940	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755600	5749159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUST00000019939.12	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	1923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378026	42411366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUST00000019945.15	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUST00000019951.16	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUST00000019962.15	chr10	+	2922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	0	0	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	20	True	AATAAA	-25	NA	41395409	41407044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUST00000019965.13	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
ENSMUST00000019967.16	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUST00000020002.9	chr10	-	846	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	12	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTGGCTGTGTTTT	NA	False	NA	-4	True	AATAAA	-22	NA	17899036	17887007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_17887565_17894586_17894654_17898814
ENSMUST00000020012.7	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777741	43750183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUST00000020027.11	chr10	-	2880	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408626	57391869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUST00000020081.11	chr10	+	1834	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	0	0	0	0	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	10	True	AATAAA	-23	NA	72490676	72510796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
ENSMUST00000020109.5	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568157	89547832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUST00000020145.12	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870564	21875802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000020163.7	chr10	-	3534	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTCTGAGCTTGAACC	NA	False	NA	-1	True	AATAAA	-19	NA	92558282	92520607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
ENSMUST00000020171.12	chr10	+	2398	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGGCTTGGCTGTTCAT	NA	False	NA	5	True	AATAAA	-21	NA	24471339	24474576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
ENSMUST00000020209.16	chr10	+	1110	4	FSM	ENSMUSG00000020022.18	ENSMUST00000020209.16	1110	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	1645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGCAAGATGTTCTATTT	NA	False	NA	11	True	NA	NA	NA	94034816	94057305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000020215.16	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUST00000020238.14	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	1783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUST00000020252.10	chr10	+	1139	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295430	88309097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUST00000020270.6	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUST00000020273.16	chr10	-	2604	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTTGTAATTGCCTT	NA	False	NA	95	True	AATAGA	-18	NA	62285517	62264987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ENSMUST00000020283.5	chr10	-	2175	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619926	61574443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
ENSMUST00000020285.10	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516088	61529076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUST00000020286.7	chr10	+	1364	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	3101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2052	False	NA	15	True	AATAAA	-16	NA	61484330	61509947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ENSMUST00000020298.8	chr10	+	789	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925137	60930103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
ENSMUST00000020307.11	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ENSMUST00000020308.5	chr10	-	1755	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	-4	True	AATAAA	-17	NA	59787656	59785490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59786852_59787138_59787395_59787518
ENSMUST00000020317.8	chr11	-	1544	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
ENSMUST00000020341.9	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80155382_80156016
ENSMUST00000020358.12	chr11	+	2827	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151431	20176856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUST00000020361.7	chr10	+	758	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	0	0	0	0	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	1636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTGTTCTGTGTGGA	9692	False	NA	23	True	AATAAA	-14	NA	80085285	80092626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUST00000020372.6	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	2477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80238990_80239969_80240121_80242529
ENSMUST00000020382.8	chr10	-	1327	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3371	False	NA	-14	True	AATAAA	-14	NA	117060412	117051126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ENSMUST00000020408.16	chr10	-	3099	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
ENSMUST00000020446.11	chr10	+	904	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120044654	120060822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
ENSMUST00000020454.11	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186258	81181884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ENSMUST00000020463.14	chr10	-	3118	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_4	53.9264236863306	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACCAGAACCCTGCTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	81332226	81322082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ENSMUST00000020484.9	chr10	+	3325	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	0	0	0	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695012	82733546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUST00000020493.9	chr10	+	2290	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095051	77105409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
ENSMUST00000020504.6	chr11	+	636	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	4530	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTGTTACTCTGGAA	NA	False	NA	34	True	AATAAA	-23	NA	54757208	54761327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_54757427_54760673_54760779_54761014
ENSMUST00000020552.8	chr10	+	1143	2	FSM	ENSMUSG00000020308.8	ENSMUST00000020552.8	1143	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	7965	False	NA	11	True	AATAAA	-13	NA	79505202	79511961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79505618_79511233
ENSMUST00000020576.8	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUST00000020578.11	chr11	+	1577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUST00000020579.9	chr11	-	3892	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	0	0	0	0	multi-exon	FALSE	canonical	3	534	junction_10	59.4855104336938	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624249	40592221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUST00000020629.5	chr11	+	2947	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	0	0	0	0	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	NA	False	NA	27	True	AATAAA	-17	NA	49685013	49729440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
ENSMUST00000020637.9	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ENSMUST00000020647.10	chr11	+	1142	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065675	50090942	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
ENSMUST00000020653.6	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3565	False	NA	12	True	AATAAA	-18	NA	51654513	51682752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUST00000020657.13	chr11	-	1792	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACCAGCCTCCTAGAGA	NA	False	NA	58	True	NA	NA	NA	51891311	51876323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUST00000020665.13	chr11	+	1193	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327778	46332354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_46327837_46330632_46330803_46331389
ENSMUST00000020677.8	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000020687.15	chr11	-	741	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	1740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACCCCTGATTGGTAT	NA	False	NA	-12	True	AATAAA	-34	NA	43317078	43311076	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUST00000020689.10	chr11	-	1915	12	FSM	ENSMUSG00000020419.12	ENSMUST00000020689.10	1915	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	65.3129782200057	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTGATAATTTATGT	NA	False	NA	-20	True	AATAAA	-11	NA	4391103	4295813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4375505_4375627_4377243_4377386_4385001_4385090_4391015
ENSMUST00000020699.4	chr11	+	1574	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
ENSMUST00000020719.7	chr11	+	1285	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTATATTATCTCGCT	NA	False	NA	7	True	AGTAAA	-15	NA	59099146	59101564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUST00000020741.12	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	1867	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ENSMUST00000020749.13	chr11	+	2425	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476447	29495279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUST00000020754.10	chr11	-	1664	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197409	29171531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
ENSMUST00000020756.9	chr11	+	2707	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTGCCTACTATT	NA	False	NA	NA	False	NA	NA	NA	29080747	29111828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUST00000020820.2	chr11	+	722	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	0	0	0	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1481	False	NA	12	True	AGTAAA	-15	NA	58062486	58070391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUST00000020822.12	chr11	+	2035	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	0	0	0	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994978	58009420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUST00000020824.15	chr11	-	2771	15	FSM	ENSMUSG00000020516.16	ENSMUST00000020824.15	2771	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_9	88.8732472774156	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435631	86392858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86407569_86407814_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUST00000020831.13	chr11	-	2557	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_13	118.75144346678	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ENSMUST00000020851.15	chr11	+	1224	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90528998	90535757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
ENSMUST00000020856.6	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	False	NA	-11	True	AATAAA	-21	NA	36206824	36141833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUST00000020885.13	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ENSMUST00000020896.17	chr12	-	1932	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGGTGTTTAAATCAA	NA	False	NA	-4	True	AATAAA	-20	NA	36092488	36064555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ENSMUST00000020947.7	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_10441227_10444537
ENSMUST00000020949.12	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ENSMUST00000020957.13	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725229	28732174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUST00000020959.9	chr12	+	1455	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699600	28709588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUST00000020980.12	chr12	+	2193	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGGGTAAAATGTAC	NA	False	NA	72	True	ATTAAA	-26	NA	24758239	24764145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUST00000021001.10	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUST00000021030.8	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017250	105031220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUST00000021046.6	chr11	+	4011	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	0	0	0	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107751	106139965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUST00000021048.7	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ENSMUST00000021049.9	chr11	+	1316	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	3218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
ENSMUST00000021060.6	chr11	-	1506	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4319	False	NA	NA	False	AATAAA	-33	NA	106670341	106659078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
ENSMUST00000021062.12	chr11	-	3559	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9616	False	NA	-8	True	AATAAA	-18	NA	106679358	106671180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUST00000021063.13	chr11	+	1904	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	2139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGCGTGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUST00000021077.4	chr11	+	1925	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCTGTGTCCTCCTTT	NA	False	NA	10	True	NA	NA	NA	115054166	115072007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
ENSMUST00000021082.7	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382688	115381245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUST00000021083.7	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUST00000021085.11	chr11	+	2230	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	0	0	0	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGATGGATGTTTCCAC	NA	False	NA	91	True	AATGAA	-12	NA	115455259	115474811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUST00000021087.14	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUST00000021089.11	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	-13	True	AATAAA	-17	NA	115518971	115505003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
ENSMUST00000021114.5	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	1007	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
ENSMUST00000021130.7	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
ENSMUST00000021134.10	chr11	+	1979	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5932	False	NA	NA	False	ATTAAA	-21	NA	115705549	115713920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUST00000021164.4	chr11	+	1513	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	92.1316449435263	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
ENSMUST00000021181.13	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000021183.4	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUST00000021197.10	chr11	+	2497	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836329	76878205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUST00000021243.16	chr11	+	1523	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275517	95282602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUST00000021249.11	chr11	+	1530	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920763	96924784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
ENSMUST00000021277.6	chr11	+	1950	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936477	68942490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUST00000021296.7	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
ENSMUST00000021297.6	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUST00000021306.14	chr11	-	3324	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
ENSMUST00000021313.9	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ENSMUST00000021329.14	chr11	-	3266	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588724	103567674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUST00000021332.10	chr12	-	1022	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	0	0	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	6003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120781	65109197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUST00000021335.7	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_5	42.0133700610757	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ENSMUST00000021359.7	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	34.9372011570955	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274969	69248546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUST00000021370.10	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUST00000021372.6	chr12	+	1485	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771735	69791432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUST00000021379.8	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	False	NA	NA	False	TTTAAA	-6	NA	59060178	59075256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUST00000021380.10	chr12	-	1255	6	FSM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	16.4146276229466	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCATTAATTTAATCA	NA	False	NA	31	True	AATAGA	-14	NA	59108247	59089877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59107941
ENSMUST00000021381.6	chr12	+	3485	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATCTTCATTTA	NA	False	NA	9	True	ATTAAA	-43	NA	59113669	59120784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUST00000021405.8	chr16	+	950	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	904	False	NA	15	True	ATTAAA	-16	NA	20536414	20541017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUST00000021406.6	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	False	NA	1	True	AATAAA	-40	NA	55126895	55092445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUST00000021412.9	chr12	+	1042	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	2649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	55445559	55465239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
ENSMUST00000021413.9	chr12	-	1578	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55539432	55536194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ENSMUST00000021416.9	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392679	56375087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUST00000021425.8	chr12	+	1377	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	2122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313471	87320753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUST00000021428.9	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUST00000021443.7	chr12	+	3241	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	0	0	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7911	False	NA	9	True	AATAAA	-17	NA	76302071	76366577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUST00000021471.13	chr12	+	2795	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499868	70514814	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUST00000021486.10	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
ENSMUST00000021497.16	chr12	-	1544	7	FSM	ENSMUSG00000021087.19	ENSMUST00000021497.16	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATTTCTCTCTGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	72283498	72258526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
ENSMUST00000021512.11	chr12	-	1385	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711683	72697126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
ENSMUST00000021539.16	chr12	+	1742	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976574	106041668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ENSMUST00000021544.8	chr12	-	1583	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGTTCTTGTAGTTA	NA	False	NA	0	True	AATAAA	-21	NA	78953738	78935464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
ENSMUST00000021574.8	chr13	-	2442	16	FSM	ENSMUSG00000021149.9	ENSMUST00000021574.8	2442	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	264.705085372802	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037996_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9045984
ENSMUST00000021595.10	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	2312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3973	False	NA	12	True	NA	NA	NA	100076412	100089664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ENSMUST00000021607.9	chr12	-	1990	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTTTCTGGACTCT	7489	False	NA	-17	True	AAAACA	-15	NA	102406072	102360356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ENSMUST00000021645.9	chr12	+	2008	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	0	0	0	0	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTCTAATTTTGCCAAA	NA	False	NA	10	True	NA	NA	NA	83567239	83588689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUST00000021661.13	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408741	84420570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUST00000021667.7	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820024	84821859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
ENSMUST00000021669.15	chr12	+	749	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	0	0	0	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	768	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUST00000021676.12	chr12	-	1169	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871296	85862221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ENSMUST00000021698.13	chr12	-	2852	11	FSM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	4154.7402337571	13034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662723	110657461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662215_110662685
ENSMUST00000021714.9	chr12	+	1308	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780603	111794820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
ENSMUST00000021715.6	chr12	-	2422	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780275	111769626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
ENSMUST00000021719.7	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	TRUE	canonical	3	2424	junction_1	129.659382828839	1709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933411	111927808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ENSMUST00000021726.8	chr12	+	1777	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586478	112607773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUST00000021790.7	chr13	+	914	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	43.7154434954056	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUST00000021806.11	chr13	-	2708	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGAGCTTGGTAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	47196686	47177018	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
ENSMUST00000021807.13	chr13	-	2556	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259666	47238257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
ENSMUST00000021818.9	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUST00000021843.13	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUST00000021854.14	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178264	35161731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ENSMUST00000021866.10	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	4488	False	NA	18	True	AATAAA	-19	NA	38220970	38245409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
ENSMUST00000021920.8	chr13	-	2606	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1829	False	NA	-18	True	AATAAA	-27	NA	53531433	53486783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
ENSMUST00000021930.10	chr13	+	2783	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225887	54262361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUST00000021933.8	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	4402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	False	NA	NA	False	NA	NA	NA	64518120	64511027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUST00000021956.9	chr13	-	2205	17	FSM	ENSMUSG00000021494.10	ENSMUST00000021956.9	2205	17	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTCTCACCCACCTG	NA	False	NA	1	True	ATTAAA	-27	NA	55684471	55678222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ENSMUST00000021959.11	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUST00000021963.5	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	False	NA	NA	False	AATAAA	-21	NA	55770817	55780224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
ENSMUST00000021991.11	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUST00000021993.5	chr13	-	535	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	4078	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATTATTTGAATTCAA	7712	False	NA	-25	True	AATAAA	-18	NA	67053442	67048680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
ENSMUST00000022030.11	chr13	+	2045	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	8	True	AATAAA	-19	NA	85337526	85361842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUST00000022060.7	chr13	-	1131	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	0	0	0	0	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	False	NA	1	True	AATAAA	-25	NA	74465440	74451627	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUST00000022062.8	chr13	-	2900	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	0	0	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	1921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	-8	True	NA	NA	NA	74498399	74470372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ENSMUST00000022082.8	chr13	+	1345	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	16	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTGTCCGGTTCTGT	NA	False	NA	30	True	ATTAAA	-22	NA	75987986	75998270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_75988295_75995288_75995418_75997362
ENSMUST00000022089.10	chr13	+	913	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGTAATTCTTAAAAT	NA	False	NA	27	True	AATAAA	-23	NA	69957959	69964223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
ENSMUST00000022097.6	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	2333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	False	NA	-3	True	AATAAA	-19	NA	73476661	73467992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
ENSMUST00000022098.10	chr13	+	923	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	NA	False	NA	13	True	ATTAAA	-26	NA	73479106	73480297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_73479211_73479478
ENSMUST00000022115.14	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237727	89997039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUST00000022121.13	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955824	91944651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUST00000022147.15	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	823	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261359	100274198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
ENSMUST00000022148.7	chr13	-	2123	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	0	0	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	669	False	NA	-6	True	AATAAA	-15	NA	100152147	100085040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
ENSMUST00000022153.8	chr13	-	1704	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
ENSMUST00000022163.15	chr13	-	1091	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	9930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453475	98446403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ENSMUST00000022169.10	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUST00000022176.15	chr13	-	4425	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807444	96785474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
ENSMUST00000022196.5	chr13	+	4021	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTCCTAATCCTTAC	NA	False	NA	9	True	AATAAA	-19	NA	94495467	94702825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
ENSMUST00000022203.10	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	107083666	107096268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUST00000022224.16	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_6	196.200152905139	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314931	104279824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUST00000022225.12	chr13	+	3416	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315304	104339525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUST00000022226.6	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
ENSMUST00000022228.13	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUST00000022230.15	chr13	+	2365	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAGTCATTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	104953684	104975782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUST00000022256.5	chr14	+	1387	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	1588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348778	8357589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ENSMUST00000022268.10	chr14	+	1513	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	0	0	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	2437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296747	14303777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUST00000022281.5	chr13	-	3689	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	0	0	0	0	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGAATTTCAGGAACC	7236	False	NA	NA	False	AAAAAG	-14	NA	113063932	113003951	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ENSMUST00000022294.15	chr14	-	1199	5	FSM	ENSMUSG00000021772.16	ENSMUST00000022294.15	1199	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	46.4885738649832	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198469	4189258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_4189750_4191150_4191393_4191594_4191853_4192889_4193001_4198372
ENSMUST00000022295.4	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUST00000022296.7	chr14	+	1408	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137836	4186974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000022317.15	chr14	-	1537	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735732	40715696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
ENSMUST00000022378.9	chr14	-	4418	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	0	0	0	0	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGTCTTTGGTCAGTT	NA	False	NA	89	True	AATAAA	-20	NA	45556029	45520543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
ENSMUST00000022380.9	chr14	+	2234	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	0	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATGATCCAGCTAGG	NA	False	NA	NA	False	AATAAA	-39	NA	45567244	45587162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUST00000022416.15	chr14	+	2394	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	0	0	0	0	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	336	False	NA	26	True	AATAAA	-34	NA	25842579	25887228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ENSMUST00000022496.9	chr14	-	4069	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	0	0	0	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6546	False	NA	-12	True	AATAAA	-22	NA	61677323	61602659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
ENSMUST00000022499.13	chr14	+	1494	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_2	112.951139879153	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATAGTTTTGTTGCT	NA	False	NA	5	True	AATAAA	-17	NA	62569516	62610441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUST00000022517.9	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57635986	57512449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
ENSMUST00000022518.8	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809026	57787054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000022522.15	chr14	-	1881	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	0	0	0	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	7041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746541	63729795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUST00000022528.6	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ENSMUST00000022536.3	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
ENSMUST00000022553.6	chr14	+	3037	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTCTCATTCCTCT	NA	False	NA	5	True	AATAAA	-12	NA	59678429	59786352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUST00000022587.10	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76742282_76742688_76742738_76743856
ENSMUST00000022600.4	chr14	+	1799	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATGTGCCTACAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	79635211	79661027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
ENSMUST00000022609.7	chr14	-	2851	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3444	False	NA	NA	False	AATAAA	-16	NA	65830524	65767897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
ENSMUST00000022612.10	chr14	+	1720	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043285	66055271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUST00000022613.10	chr14	-	2913	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6344	False	NA	-11	True	ATTAAA	-14	NA	66071443	66056486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
ENSMUST00000022614.7	chr14	+	2230	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074750	66104056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ENSMUST00000022634.9	chr14	-	3238	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCCATATATCATTTT	NA	False	NA	-12	True	ATTAAA	-16	NA	67246326	67222687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUST00000022650.9	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	False	NA	15	True	AATAAA	-17	NA	99337342	99491929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
ENSMUST00000022656.8	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ENSMUST00000022704.9	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUST00000022705.7	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUST00000022721.8	chr14	+	2445	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307651	103315064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ENSMUST00000022727.10	chr14	-	1682	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	250	False	NA	-4	True	ATTAAA	-20	NA	118370159	118349887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
ENSMUST00000022767.16	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUST00000022784.9	chr14	-	1587	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791818	54779241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ENSMUST00000022794.14	chr14	-	2365	13	FSM	ENSMUSG00000022185.20	ENSMUST00000022794.14	2365	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	157.658033590285	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3744	False	NA	0	True	AATAAA	-25	NA	54891152	54879617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54890670_54890736_54891136
ENSMUST00000022803.6	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54851939_54853971_54854279_54855250
ENSMUST00000022815.10	chr14	+	1200	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55252910	55261594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUST00000022816.15	chr15	-	3372	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	7369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTTTGTGTTATCCCA	809	False	NA	NA	False	AATAAA	-11	NA	11996144	11981424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ENSMUST00000022821.8	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716214	55727797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUST00000022828.9	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	55822759	55818978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
ENSMUST00000022842.16	chr15	-	1853	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	0	0	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	4906	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601950	31590945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
ENSMUST00000022856.15	chr15	+	1514	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	4	True	NA	27	True	AATAAA	-32	NA	10486103	10493775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUST00000022867.5	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	31	True	NA	NA	False	ATTAAA	-22	NA	34238173	34284448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUST00000022904.8	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUST00000022909.10	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUST00000022925.10	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	2894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728919	51649953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUST00000022945.9	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUST00000022946.6	chr15	-	1004	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ENSMUST00000022960.4	chr15	-	1506	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	0	0	0	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ENSMUST00000022962.8	chr15	+	1231	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340624	43391159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ENSMUST00000022964.9	chr15	+	1613	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	False	NA	12	True	ATTAAA	-22	NA	44482986	44504422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUST00000022977.14	chr15	+	2758	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186929	59203041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
ENSMUST00000022980.5	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	1175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTGCCTGAAGTGT	2816	False	NA	13	True	AATAAA	-14	NA	58805604	58811337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
ENSMUST00000022992.13	chr15	+	3311	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775594	57833457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ENSMUST00000022998.14	chr15	+	3144	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420803	55489819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ENSMUST00000023029.15	chr15	+	3487	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548089	81572516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
ENSMUST00000023036.7	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	3210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUST00000023040.9	chr15	-	1724	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6848	False	NA	-10	True	AATAAA	-27	NA	81245013	81203111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ENSMUST00000023059.13	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUST00000023064.9	chr15	+	1147	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	9559	False	NA	NA	False	ATTAAA	-14	NA	79543399	79551861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
ENSMUST00000023065.8	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUST00000023085.7	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	3916	junction_1	175	1651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	6212	False	NA	-13	True	GATAAA	-21	NA	82238523	82234340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82234573_82235179_82235296_82238281
ENSMUST00000023086.15	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_2	125	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230154	82233291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUST00000023087.13	chr15	-	3025	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487760	94475831	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUST00000023088.8	chr15	-	1913	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1344	False	NA	0	True	AATAAA	-31	NA	82223027	82213732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ENSMUST00000023101.10	chr15	-	3932	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96953837	96892703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ENSMUST00000023104.7	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97603706	97572977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
ENSMUST00000023112.12	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000023143.14	chr16	-	2235	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCCCCATTCATTCT	NA	False	NA	-11	True	AATAAA	-13	NA	10810985	10777138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUST00000023146.5	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUST00000023179.7	chr15	+	2772	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763458	76776595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
ENSMUST00000023189.15	chr16	-	3280	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8110	False	NA	-8	True	AATAAA	-13	NA	4867727	4831772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUST00000023191.17	chr16	-	1431	11	FSM	ENSMUSG00000022540.17	ENSMUST00000023191.17	1431	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	153.714052708267	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831391	4826593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829623_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUST00000023207.15	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ENSMUST00000023212.15	chr15	+	1686	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235505	76238573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000023217.11	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ENSMUST00000023225.8	chr15	+	1725	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130974	76134104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUST00000023231.7	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8919	False	NA	-29	True	AATAAA	-15	NA	75801602	75796531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000023237.8	chr15	-	1898	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTGTCGTTAGTTCAC	NA	False	NA	NA	False	CATAAA	-30	NA	75766330	75762804	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
ENSMUST00000023238.6	chr15	+	1792	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734175	75739257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUST00000023269.5	chr16	+	677	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	4993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786637	55791798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUST00000023289.13	chr15	-	1707	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1180	False	NA	NA	False	AATAAA	-23	NA	89314102	89310569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUST00000023330.8	chr16	+	3045	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251599	48451263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUST00000023351.11	chr16	-	1035	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	21	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGAGTCCTGGTTT	NA	False	NA	-2	True	ATTAAA	-22	NA	15681211	15666304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15666594_15680261_15680408_15680611
ENSMUST00000023353.4	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	TRUE	canonical	3	1276	junction_6	130.715909088714	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUST00000023357.14	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135239	14117107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUST00000023359.13	chr16	+	2287	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981138	14010792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUST00000023362.15	chr16	+	1175	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637114	13653315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUST00000023363.8	chr16	+	3582	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	0	0	0	0	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGTGTTGAATTTTA	NA	False	NA	27	True	AATAAA	-20	NA	13598576	13632703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
ENSMUST00000023365.13	chr16	+	3003	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489721	13521476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUST00000023396.10	chr16	+	1842	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455537	8475395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUST00000023407.12	chr16	+	2159	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCCGGTATATACATG	NA	False	NA	-44	True	NA	NA	NA	59292137	59312824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUST00000023426.12	chr16	+	2147	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUST00000023432.10	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	56987695	56977027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUST00000023444.11	chr16	+	3394	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	0	0	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326551	17344197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ENSMUST00000023453.10	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950247	16948001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16948653_16949460_16949658_16949987
ENSMUST00000023455.14	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUST00000023460.7	chr16	+	2070	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTATTTCCTCGC	NA	False	NA	4	True	AATAAA	-15	NA	31767330	31777290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUST00000023477.15	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUST00000023486.15	chr16	+	4890	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCGGACTCATTTCATA	7957	False	NA	18	True	AATAAA	-19	NA	32427737	32451612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUST00000023510.7	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUST00000023525.9	chr16	-	3084	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360151	37330151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ENSMUST00000023535.4	chr16	+	2257	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648769	36693075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUST00000023550.9	chr16	-	1809	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311243	35217681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
ENSMUST00000023562.9	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9190	False	NA	-2	True	ATTAAA	-16	NA	21766302	21753075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
ENSMUST00000023587.12	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000023598.15	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	1327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUST00000023629.9	chr16	+	3303	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCAATTTCTTTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	62674669	62749709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
ENSMUST00000023630.16	chr16	-	1044	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792160	95781132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
ENSMUST00000023666.11	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUST00000023669.14	chr16	-	1816	12	FSM	ENSMUSG00000022948.17	ENSMUST00000023669.14	1816	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_11	42.1206452981264	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400691	93380344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400099_93400453
ENSMUST00000023677.10	chr16	-	838	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	2281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	811	False	NA	-1	True	AATAAA	-20	NA	91728575	91722101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUST00000023684.14	chr16	-	3518	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	0	0	0	0	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAGGGCACTTAGAG	NA	False	NA	NA	False	NA	NA	NA	91443840	91418073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUST00000023686.15	chr16	-	2347	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAATCTGAGTCTTTT	NA	False	NA	-6	True	AATAAA	-24	NA	91394688	91371390	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
ENSMUST00000023707.11	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
ENSMUST00000023736.10	chr15	-	2304	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98816112	98801797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUST00000023749.15	chr15	+	2452	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	0	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290762	99307930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000023756.12	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ENSMUST00000023762.13	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUST00000023769.11	chr15	+	2365	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125699	100159125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
ENSMUST00000023810.12	chr15	+	1224	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	2378	False	NA	40	True	AATAAA	-43	NA	102367609	102371241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
ENSMUST00000023813.9	chr15	+	1523	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	28.7706447616316	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426893	102432111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUST00000023829.8	chr17	+	1913	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	0	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	1407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4647	False	NA	24	True	NA	NA	NA	29312742	29319696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUST00000023856.9	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	4784	False	NA	19	True	AATAAA	-20	NA	19376446	19399787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
ENSMUST00000023869.15	chr5	+	2339	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	8978	False	NA	NA	False	AATGAA	-2	NA	124045237	124066898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUST00000023913.11	chr16	+	2495	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946606	95959052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUST00000023918.13	chr1	+	3511	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	0	0	0	0	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTGTGGGATTTAATGT	NA	False	NA	17	True	ATTAAA	-21	NA	151220227	151240173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUST00000023924.4	chr14	-	2401	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTATATACCTT	NA	False	NA	-15	True	NA	NA	NA	14389406	14377938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUST00000023994.10	chr2	-	1768	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605748	84595730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
ENSMUST00000024031.13	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUST00000024042.5	chr15	+	1366	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
ENSMUST00000024047.12	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080306	106092588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000024171.14	chr6	+	3237	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	0	0	0	0	multi-exon	TRUE	canonical	2	108	junction_8	52.5929548855327	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUST00000024338.5	chr4	+	1315	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGCACTCTGCTTAT	NA	False	NA	10	True	AATAAA	-24	NA	156046774	156051086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
ENSMUST00000024486.14	chr11	+	1332	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000024594.9	chr17	+	1915	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12338170	12438532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUST00000024636.15	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_6	38.250587420542	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ENSMUST00000024657.12	chr17	-	1663	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181535	15165270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
ENSMUST00000024698.10	chr17	-	984	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896442	23894418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ENSMUST00000024701.9	chr17	+	2040	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	0	0	0	0	multi-exon	TRUE	canonical	3	384	junction_2	52.6761379583211	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATAGCTCTTCTTGTCCCT	2938	False	NA	29	True	AATAAA	-43	NA	23945309	23955704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUST00000024727.10	chr17	-	3027	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2184	False	NA	-2	True	AATAAA	-20	NA	45744663	45702809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUST00000024733.9	chr17	+	3349	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_8	22.4045468336421	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	19	True	AATACA	-33	NA	45817766	45831769	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
ENSMUST00000024734.8	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	143	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	45997247	46009421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45997354_46006407_46006499_46008973
ENSMUST00000024736.14	chr17	-	3628	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	0	True	AATAAA	-30	NA	53996361	53981813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
ENSMUST00000024739.14	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	TRUE	canonical	3	9221	junction_4	988.252604347694	24151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ENSMUST00000024763.10	chr17	+	884	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	778	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421911	46439836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUST00000024778.3	chr17	+	2054	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGTAGTTGCCTTCTT	NA	False	NA	NA	False	CATAAA	-16	NA	47922506	47935343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUST00000024782.12	chr17	+	1388	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48037766	48045407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUST00000024802.10	chr17	-	1462	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9689	False	NA	1	True	NA	NA	NA	29483160	29469776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUST00000024832.9	chr17	-	1191	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	7.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTCTGATGTCGCTTC	NA	False	NA	-1	True	AATAAA	-26	NA	31496357	31473992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
ENSMUST00000024851.10	chr17	-	2201	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCCCTCCCATTTCTG	NA	False	NA	-11	True	AATAAA	-19	NA	71833852	71803094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
ENSMUST00000024882.8	chr17	+	2838	20	FSM	ENSMUSG00000024078.8	ENSMUST00000024882.8	2838	20	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	16.0728948897983	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	75024726	75170565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ENSMUST00000024887.6	chr17	+	1749	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTCTCCTTATCAA	NA	False	NA	NA	False	AGTAAA	-12	NA	79244564	79254928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUST00000024930.8	chr17	-	2166	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCGGGCAGTGGTGGTGC	3337	False	NA	NA	False	NA	NA	NA	24439764	24434027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUST00000024932.12	chr17	-	1183	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	3021	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24388435	24382839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24383583_24383672_24383857_24388179
ENSMUST00000024946.7	chr17	+	1086	7	FSM	ENSMUSG00000024132.7	ENSMUST00000024946.7	1086	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	202.517008887868	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4882	False	NA	11	True	TATAAA	-24	NA	24645656	24658294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24645717_24645826_24645914_24652115_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000024957.7	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332834	87304683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUST00000024959.10	chr17	+	1184	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTGTCTTCAATGAT	NA	False	NA	4	True	AATAAA	-14	NA	87332977	87343238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUST00000024967.14	chr17	+	3283	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4661	False	NA	19	True	AATAAA	-16	NA	87979757	88031141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ENSMUST00000024978.7	chr17	+	715	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	9.82344135219425	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAAAAGTAGTGTTAAG	NA	False	NA	36	True	AATAAA	-35	NA	25115473	25116496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000024981.9	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUST00000025007.7	chr17	-	1006	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314576	26310707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUST00000025014.10	chr17	+	1068	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ENSMUST00000025023.15	chr17	+	1700	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATGTTTACATTAGTG	NA	False	NA	13	True	ATTAAA	-25	NA	26471869	26499693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000025027.10	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUST00000025040.6	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7005	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-27	NA	108117470	108117080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_108117100_108117500
ENSMUST00000025045.15	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	1166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	1947	False	NA	2	True	AATAAA	-24	NA	27352890	27341636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
ENSMUST00000025052.14	chr17	-	522	5	FSM	ENSMUSG00000052146.17	ENSMUST00000025052.14	522	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2686.58356467838	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27849481_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUST00000025095.9	chr17	-	1076	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	644	3606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	9947	False	NA	-23	True	AATAAA	-23	NA	83821759	83809346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_83810167_83811528_83811658_83821632
ENSMUST00000025101.10	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	False	NA	16	True	AATAAA	-24	NA	84933923	84963016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
ENSMUST00000025106.5	chr18	+	1015	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922211	31929754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
ENSMUST00000025170.11	chr17	+	2229	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1979	False	NA	13	True	ATTAAA	-16	NA	34159633	34168671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ENSMUST00000025181.18	chr17	-	1619	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATGATAGATGAATAAA	NA	False	NA	-40	True	NA	NA	NA	34219321	34215026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000025186.16	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUST00000025209.12	chr18	-	702	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_2	20.7980768341691	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795239	35789741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUST00000025215.10	chr18	-	1703	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631982	35399448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
ENSMUST00000025217.11	chr18	-	3049	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	0	0	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	3120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	199	False	NA	-19	True	CATAAA	-5	NA	35087410	35070466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUST00000025218.8	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUST00000025228.12	chr18	-	2084	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784788	34764003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUST00000025241.7	chr18	+	2708	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTCTCTATTTTATTG	NA	False	NA	NA	False	TATAAA	-24	NA	32373352	32403204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
ENSMUST00000025246.13	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35340262	35335173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ENSMUST00000025271.17	chr17	+	1362	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	0	0	0	0	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	9203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
ENSMUST00000025276.15	chr18	+	2170	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGTTGCTAACTCCC	NA	False	NA	NA	False	AATAAA	-45	NA	12301773	12323054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUST00000025278.8	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544592	94550915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUST00000025290.7	chr18	+	3763	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13104979	13126007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUST00000025305.16	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUST00000025314.7	chr18	+	2394	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGCCCTTGAGTGTG	3967	False	NA	20	True	AATAAA	-21	NA	38383311	38395682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
ENSMUST00000025363.7	chr18	-	2375	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36648858	36637979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
ENSMUST00000025385.7	chr18	+	2684	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261267	50329336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ENSMUST00000025394.14	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	False	NA	NA	False	AATAAA	-40	NA	65933585	65950755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
ENSMUST00000025418.4	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUST00000025419.9	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
ENSMUST00000025420.14	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857658	67798581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUST00000025421.9	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUST00000025427.14	chr18	+	1852	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433470	68454977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUST00000025463.14	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250081	80255938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
ENSMUST00000025474.14	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110901	63132521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUST00000025483.11	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	4969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUST00000025506.7	chr18	+	2210	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTTTAAGACTGGATTA	NA	False	NA	35	True	ATTAAA	-45	NA	60693807	60705882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
ENSMUST00000025511.11	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	37607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000025546.17	chr18	-	2124	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84703827	84685589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
ENSMUST00000025563.8	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	5369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	4869	False	NA	23	True	AATAAA	-21	NA	9960009	9962462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
ENSMUST00000025567.9	chr19	-	3150	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	0	0	0	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	9871	False	NA	-4	True	AATAAA	-25	NA	10079110	10040128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ENSMUST00000025642.14	chr19	+	2134	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872594	10882896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUST00000025651.6	chr19	-	2341	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_1	0	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2030	False	NA	NA	False	AATAAA	-14	NA	10181432	10176501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10178462_10181051
ENSMUST00000025667.14	chr19	-	2898	8	FSM	ENSMUSG00000024758.16	ENSMUST00000025667.14	2898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	306.474621914362	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	8960	False	NA	-18	True	AATAAA	-17	NA	7460646	7403265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7445175_7445233_7460303
ENSMUST00000025679.11	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183681	7175566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUST00000025702.14	chr19	-	1635	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178334	6169428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ENSMUST00000025704.3	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135012	6141807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000025707.9	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6440	False	NA	NA	False	AATAAA	-18	NA	6134973	6130791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
ENSMUST00000025713.12	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9961	False	NA	0	True	AATAAA	-15	NA	6117872	6112850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUST00000025714.9	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061130	36082177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUST00000025740.8	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUST00000025743.7	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7371	False	NA	13	True	NA	NA	NA	3333059	3341201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUST00000025752.15	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ENSMUST00000025759.9	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUST00000025767.14	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
ENSMUST00000025773.5	chr19	+	913	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCTTACATCTCTTA	NA	False	NA	6	True	AATAAA	-18	NA	4281952	4283688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
ENSMUST00000025774.11	chr19	-	3222	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	0	0	0	0	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3866	False	NA	-25	True	AATAAA	-18	NA	5345483	5323959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUST00000025779.11	chr19	+	1080	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTCTGTGTGTGGTT	6876	False	NA	34	True	AATAAA	-23	NA	4147181	4149017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUST00000025802.10	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ENSMUST00000025804.7	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ENSMUST00000025815.10	chr19	-	1929	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	24938965	24897279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUST00000025823.6	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675668	4672622	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000025826.7	chr19	+	2401	12	FSM	ENSMUSG00000024891.7	ENSMUST00000025826.7	2401	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	25.5138918569071	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4269	False	NA	18	True	ATTAAA	-19	NA	5074098	5081997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080319_5080519_5081029
ENSMUST00000025847.7	chr19	+	1215	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	NA	False	NA	15	True	AATAAA	-15	NA	5510656	5515077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUST00000025851.4	chr19	-	2683	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	0	0	0	0	multi-exon	TRUE	canonical	3	495	junction_17	96.7659038009169	528	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978315	4957256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ENSMUST00000025885.6	chr19	-	699	4	FSM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_2	15.6276108929747	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTCTTTCTTGGTTCT	NA	False	NA	3	True	AAAACA	-17	NA	5781755	5780330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5780741_5781268_5781354_5781471_5781624_5781703
ENSMUST00000025904.12	chr19	-	1262	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6887474	6884073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUST00000025915.13	chr19	-	1074	6	FSM	ENSMUSG00000024963.13	ENSMUST00000025915.13	1074	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_3	27.3978101314685	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9276	False	NA	-4	True	AATAAA	-17	NA	6969871	6965278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526
ENSMUST00000025918.9	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	1893	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ENSMUST00000025955.8	chr19	-	5125	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8754	False	NA	-31	True	AATAAA	-17	NA	60779081	60749554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ENSMUST00000025957.9	chr19	+	2307	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUST00000025961.7	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
ENSMUST00000025979.13	chr19	-	3527	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	0	0	0	0	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576907	40538700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUST00000025997.7	chr19	-	1948	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379009	53367826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUST00000026009.10	chr19	-	843	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	False	NA	-21	True	AATAAA	-35	NA	46561532	46519534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUST00000026016.13	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	21.435951110226	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438564	17422802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
ENSMUST00000026036.5	chrX	+	1808	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_1	0	759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_85236581_85238956
ENSMUST00000026050.8	chr19	+	1182	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	8468	False	NA	21	True	ATTAAA	-30	NA	47843408	47853229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUST00000026092.9	chr7	-	887	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439226	81431929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUST00000026129.16	chr11	-	1881	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508762	120500912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUST00000026133.15	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUST00000026135.15	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563817	120600273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000026137.8	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
ENSMUST00000026144.5	chr11	-	892	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	9984	False	NA	-4	True	AATAAA	-37	NA	120618107	120616224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000026154.9	chr19	+	1821	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUST00000026169.7	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095537	121068416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
ENSMUST00000026173.13	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUST00000026196.14	chr19	-	2058	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8317	False	NA	-3	True	NA	NA	NA	43513044	43488190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUST00000026222.11	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	3223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
ENSMUST00000026262.8	chr9	+	1996	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446822	59472392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUST00000026289.10	chrX	+	962	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_1	187.651165730459	1578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUST00000026303.16	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371145	149354503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ENSMUST00000026318.15	chrX	-	1162	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUST00000026324.10	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	1384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUST00000026328.11	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	False	NA	-1	True	AATAAA	-22	NA	154121463	154106913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
ENSMUST00000026387.11	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284371	130274571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUST00000026405.10	chr10	-	550	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
ENSMUST00000026409.5	chr10	-	1573	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCAGTTTCCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	128657463	128653770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ENSMUST00000026415.9	chr10	-	2240	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAATCTCTTTCATAT	8275	False	NA	-16	True	ATTAAA	-20	NA	128540872	128533807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUST00000026416.15	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUST00000026420.7	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	15959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
ENSMUST00000026425.13	chr10	-	2432	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	8745	False	NA	-5	True	AATAAA	-14	NA	128401803	128393634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000026434.13	chr11	+	1557	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTAGTGTCTTGGT	NA	False	NA	18	True	ATTAAA	-33	NA	119804635	119810374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
ENSMUST00000026439.14	chr10	-	1130	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245743	128237263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ENSMUST00000026446.4	chr10	+	763	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158336	128163056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUST00000026459.6	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	8585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	False	NA	11	True	ATTAAA	-22	NA	127919141	127926260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUST00000026461.8	chr10	+	1583	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCTCGGTTCTACCC	984	False	NA	18	True	TATAAA	-20	NA	127851040	127865906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUST00000026470.6	chr10	-	2289	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	0	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCCCACGG	NA	False	NA	-21	True	NA	NA	NA	127358313	127353007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUST00000026475.15	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
ENSMUST00000026479.11	chr10	+	1784	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9216	False	NA	16	True	AATAAA	-18	NA	127102255	127117819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUST00000026480.13	chr4	-	2121	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	0	0	0	0	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536141	106519452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
ENSMUST00000026487.6	chr18	+	1402	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	0	0	0	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTCTGATTTATGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	77017712	77029308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUST00000026495.15	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	7877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861428	77870569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUST00000026506.5	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	1365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUST00000026519.10	chr13	+	2565	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_1	23.5189049253763	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUST00000026538.13	chr7	-	1557	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	-1	True	NA	NA	NA	139696389	139685622	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUST00000026539.14	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUST00000026540.9	chr7	+	620	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCGTGTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	139673307	139677113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
ENSMUST00000026553.6	chr7	-	1460	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367765	140357141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
ENSMUST00000026564.9	chr7	+	736	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140548352_140549401
ENSMUST00000026565.7	chr7	-	678	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_1	0	1320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	False	NA	2	True	AATAAA	-23	NA	140590683	140589498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140589803_140590309
ENSMUST00000026576.5	chr7	+	1229	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	0	0	0	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	2753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3840	False	NA	18	True	ATTAAA	-17	NA	140972111	140982881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUST00000026585.14	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3491	False	NA	45	True	NA	NA	NA	141055152	141073340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUST00000026599.10	chrX	+	1359	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGCTTTGTTTATTTAT	NA	False	NA	7	True	AATAAA	-20	NA	111221030	111282452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUST00000026608.11	chr5	+	1492	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058130	130089630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUST00000026613.14	chr5	-	2687	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_6	16.6092675514317	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031890	130017851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUST00000026624.11	chr14	+	3107	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_12	125.603480743967	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCCAAAGTGTAGTAATT	NA	False	NA	18	True	ATTAAA	-20	NA	122344449	122397016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUST00000026625.7	chr14	+	1231	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUST00000026649.14	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
ENSMUST00000026667.15	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	2082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUST00000026704.14	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	4767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUST00000026723.9	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	1629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	12	True	AATAAA	-16	NA	52077013	52110536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUST00000026735.9	chr9	+	1526	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTATATCAGACTCAG	NA	False	NA	14	True	ATTAAA	-28	NA	108911560	108921557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
ENSMUST00000026737.12	chr9	+	1834	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867652	108886792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUST00000026743.14	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	4484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765700	108778691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ENSMUST00000026816.15	chr7	-	2114	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	-3	True	AATAAA	-16	NA	80551017	80540470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUST00000026818.12	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUST00000026826.14	chr17	-	2466	7	FSM	ENSMUSG00000025730.15	ENSMUST00000026826.14	2466	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	False	NA	-1	True	AGTAAA	-17	NA	26138688	26101087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
ENSMUST00000026832.14	chr17	+	2091	9	FSM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGGTGGATGCGCC	NA	False	NA	17	True	NA	NA	NA	26048016	26050816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUST00000026839.5	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUST00000026841.15	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	False	NA	10	True	AATAAA	-25	NA	30360245	30389591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000026843.12	chr5	-	2552	20	FSM	ENSMUSG00000025745.13	ENSMUST00000026843.12	2552	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	102.267992951223	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359974	30324423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_30324959_30325042_30325064_30325717_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUST00000026858.11	chr3	+	3479	16	FSM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_10	36.6472675955824	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTTATTGGCTAAATA	7785	False	NA	27	True	AATAAA	-23	NA	40754453	40771318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUST00000026887.14	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	1582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUST00000026891.5	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	False	NA	15	True	AATAAA	-20	NA	122942279	122965194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ENSMUST00000026899.4	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	False	NA	23	True	AATAAA	-37	NA	120382665	120390013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
ENSMUST00000026986.7	chr13	+	648	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_1	0	737	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCTTAATCTCATTCC	5978	False	NA	23	True	AATAAA	-27	NA	54738019	54738971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_54738233_54738536
ENSMUST00000026987.12	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUST00000026989.15	chr13	-	2727	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713248	54699030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ENSMUST00000026990.6	chr13	-	2335	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	-3	True	AATAAA	-15	NA	54616662	54606649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ENSMUST00000026991.16	chr13	+	1748	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_3	87.926617130423	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769636	54809399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUST00000027036.11	chr1	+	2507	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	0	0	0	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878045	4916962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ENSMUST00000027057.8	chr1	+	1581	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875887	15913694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUST00000027068.11	chr1	-	2938	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	0	0	0	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9656	False	NA	-9	True	ATTAAA	-15	NA	13660134	13634921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
ENSMUST00000027111.15	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ENSMUST00000027123.15	chr1	-	2423	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	0	0	0	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	2355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUST00000027125.7	chr1	+	1733	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTTATTTAAATCTTT	3559	False	NA	22	True	AATAAA	-28	NA	55091928	55111861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
ENSMUST00000027139.15	chr1	+	2953	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834325	45862779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ENSMUST00000027157.10	chr1	+	2692	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUST00000027193.9	chr1	+	763	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625542	58635123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUST00000027198.12	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUST00000027257.10	chr1	-	1231	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUST00000027264.10	chr1	-	2442	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	False	NA	-2	True	AATAAA	-41	NA	53391911	53383775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUST00000027266.4	chr1	+	1910	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTCCTCTGTTTAA	NA	False	NA	93	True	TATAAA	-8	NA	53336253	53349468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
ENSMUST00000027279.12	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ENSMUST00000027285.13	chr1	+	1414	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGCAAGCGGTAT	NA	False	NA	NA	False	AATGAA	-44	NA	37469250	37478205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000027286.7	chr1	-	3863	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	27.5	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTGTTTCAAGATTA	6272	False	NA	-3	True	NA	NA	NA	37469184	37456164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUST00000027297.11	chr1	+	3279	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	18	True	ATTAAA	-18	NA	34889072	34918661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUST00000027338.4	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	0.5	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24044737	24035019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_24035442_24042237_24042388_24044626
ENSMUST00000027357.12	chr1	-	1479	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	8.63384096891663	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	74640556	74632906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000027370.13	chr1	+	2937	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324203	74392843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ENSMUST00000027379.10	chr1	+	2549	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGTGTGAAGTCTCA	322	False	NA	22	True	TATAAA	-28	NA	72346585	72434111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ENSMUST00000027381.13	chr1	-	1186	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323473	72298330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ENSMUST00000027384.6	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_4	38.3577313661217	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUST00000027394.12	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2041	False	NA	12	True	AGTAAA	-18	NA	75145298	75148269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000027396.15	chr1	-	2966	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75157036	75148360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
ENSMUST00000027432.9	chr1	+	3112	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCAATCCACACACCA	NA	False	NA	NA	False	NA	NA	NA	85992340	86066873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ENSMUST00000027444.15	chr1	-	1159	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	False	NA	17	True	ATTAAA	-43	NA	86510269	86470715	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
ENSMUST00000027464.9	chr1	+	1424	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753734	79759162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
ENSMUST00000027492.14	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
ENSMUST00000027503.14	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	1052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ENSMUST00000027534.13	chr1	-	1368	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326505	91303552	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
ENSMUST00000027579.17	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
ENSMUST00000027580.11	chr1	+	2733	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488752	125523557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
ENSMUST00000027601.11	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ENSMUST00000027602.15	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	2023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345096	128291443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ENSMUST00000027626.13	chr1	+	1889	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGGGACTTTTTTTAA	NA	False	NA	6	True	NA	NA	NA	118249568	118261552	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUST00000027634.13	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	1178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	False	NA	-1	True	ATTAAA	-29	NA	120048808	120041009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ENSMUST00000027655.8	chr1	+	2166	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ENSMUST00000027677.8	chr1	+	1823	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135656884	135679970	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUST00000027687.8	chr1	+	1116	7	FSM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	158.492902049272	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890302	134901900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUST00000027700.15	chr1	+	3385	15	FSM	ENSMUSG00000026439.15	ENSMUST00000027700.15	3385	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	125.154109083195	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	9	True	AATAAA	-18	NA	132405172	132433397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_132405266_132411789_132411816_132412483_132412540_132413185_132413244_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ENSMUST00000027777.12	chr1	+	3873	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3147	False	NA	10	True	ATTAAA	-18	NA	180396493	180428819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUST00000027781.7	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
ENSMUST00000027792.6	chr1	+	1367	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	0	0	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952314	181959972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUST00000027802.9	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	16	False	NA	32	True	NA	NA	NA	180731857	180735653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUST00000027867.7	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGTCATCTTGTAG	NA	False	NA	20	True	AATAAA	-20	NA	164103153	164115416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
ENSMUST00000027916.13	chr1	+	2200	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064345	185089974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ENSMUST00000027931.8	chr1	+	3227	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGTTTGTATTCT	NA	False	NA	29	True	TATAAA	-40	NA	191553555	191565162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
ENSMUST00000027940.6	chr1	+	2246	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	21.6248156769306	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGCTACCTTTGTCT	NA	False	NA	6	True	AATAAA	-15	NA	191058108	191083111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUST00000027945.6	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	-4	True	TATAAA	-16	NA	190795102	190778038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000027961.12	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	1277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUST00000027975.8	chr2	+	1438	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	991	False	NA	9	True	AATAAA	-20	NA	4923829	4943541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUST00000027980.8	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
ENSMUST00000028000.13	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_14	29.0531708199618	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUST00000028004.11	chr1	+	2835	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTGCCGTCTTAATT	NA	False	NA	6	True	ATTAAA	-18	NA	167177559	167196101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
ENSMUST00000028059.9	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ENSMUST00000028105.13	chr2	-	2344	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424281	12352073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUST00000028129.13	chr2	-	2108	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3950	False	NA	-13	True	AATAAA	-15	NA	32872094	32863001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
ENSMUST00000028139.11	chr2	+	1254	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236830	29414805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUST00000028148.11	chr2	-	2273	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	-13	True	AATAAA	-20	NA	32584197	32572620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
ENSMUST00000028151.7	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4773	False	NA	23	True	AATAAA	-24	NA	32460869	32463591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
ENSMUST00000028200.9	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	-8	True	TTTAAA	-30	NA	30857945	30850638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
ENSMUST00000028209.15	chr2	+	2251	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGCATACATTACTTG	NA	False	NA	9	True	AATAAA	-16	NA	30282265	30290541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUST00000028214.15	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000028238.15	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9552	False	NA	NA	False	AATAAA	-26	NA	35091132	35070216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUST00000028251.10	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUST00000028278.14	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	2215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8547	False	NA	31	True	AATAAA	-17	NA	61542037	61630720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUST00000028286.12	chr2	-	1489	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9481	False	NA	1	True	TATAAA	-45	NA	26494344	26483068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ENSMUST00000028332.8	chr2	-	1682	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9001	False	NA	-17	True	AATAAA	-17	NA	25246371	25242301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
ENSMUST00000028336.7	chr2	+	2548	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTGTAATGGCAAGG	NA	False	NA	24	True	ATTAAA	-17	NA	53082099	53109232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
ENSMUST00000028342.7	chr2	-	862	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_2	68	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162428	25161050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25161594_25161940_25162141_25162309
ENSMUST00000028351.9	chr2	+	1666	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852411	24862175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUST00000028368.14	chr2	-	2072	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712928	59682707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ENSMUST00000028382.13	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	False	NA	12	True	AATAAA	-21	NA	80469159	80489246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUST00000028430.6	chr2	-	655	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
ENSMUST00000028469.14	chr2	+	2539	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTATCTGTGACTG	NA	False	NA	17	True	AATAAA	-19	NA	84669751	84693930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUST00000028470.10	chr2	+	690	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6417	False	NA	10	True	ATTAAA	-15	NA	84657340	84660557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84657492_84657942_84658058_84660133
ENSMUST00000028475.9	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557694	84553465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUST00000028487.10	chr2	-	1492	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304518	84263203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ENSMUST00000028494.9	chr2	+	2260	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619979	69627567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
ENSMUST00000028509.11	chr2	+	2238	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGTGTACTTCATGTGT	NA	False	NA	38	True	AATAAA	-38	NA	70491919	70522087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUST00000028517.13	chr2	-	2175	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	-13	True	ATTAAA	-14	NA	73044791	72923144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000028527.8	chr2	+	3369	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1376	False	NA	25	True	ATTAAA	-16	NA	109111082	109172092	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
ENSMUST00000028536.13	chr2	-	3337	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804769	106792871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
ENSMUST00000028551.4	chr2	-	983	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	4997	False	NA	-5	True	AATAAA	-29	NA	112198372	112193355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
ENSMUST00000028552.4	chr2	+	2886	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	10	True	AATAAA	-20	NA	112209555	112244585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUST00000028580.12	chr2	+	2070	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848161	109875661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUST00000028583.8	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUST00000028584.8	chr2	+	1191	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716597	101731991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
ENSMUST00000028592.12	chr2	-	1283	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	1136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2640	False	NA	-16	True	AGTAAA	-17	NA	104847425	104830000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUST00000028595.8	chr2	-	1801	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
ENSMUST00000028599.8	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTTTCTTTGTATG	6900	False	NA	19	True	AATAAA	-20	NA	104420867	104495774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
ENSMUST00000028610.10	chr2	-	2613	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGACTTTGGAGGTTC	NA	False	NA	NA	False	NA	NA	NA	103315505	103284193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ENSMUST00000028617.7	chr2	-	3736	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUST00000028619.5	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	572	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988309	93863033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ENSMUST00000028635.6	chr2	-	2073	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701059	125673521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUST00000028650.9	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUST00000028661.6	chr2	+	2115	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	AATAAA	-15	NA	122016752	122036878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUST00000028672.13	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
ENSMUST00000028691.7	chr2	+	2791	17	FSM	ENSMUSG00000027255.15	ENSMUST00000028691.7	2791	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	82.4431385486385	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5821	False	NA	NA	False	AATAAA	-25	NA	91095637	91107276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099414_91099457_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUST00000028694.12	chr2	+	1862	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4750	False	NA	19	True	AATAAA	-16	NA	91087157	91095023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUST00000028768.2	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
ENSMUST00000028780.4	chr2	+	1637	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	33	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119182118_119182837_119182874_119183669
ENSMUST00000028806.12	chr2	+	2270	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCAGTTCAAAGGCTC	NA	False	NA	31	True	AATAAA	-32	NA	131333683	131367103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
ENSMUST00000028816.9	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4870	False	NA	-2	True	TATAAA	-20	NA	132089727	132081411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUST00000028817.7	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	2430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUST00000028841.14	chr2	+	4145	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	0	0	0	0	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3576	False	NA	6	True	ATTAAA	-20	NA	126549262	126601217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
ENSMUST00000028848.4	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286470	127278134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUST00000028858.8	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUST00000028866.9	chr2	-	1624	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	0	0	0	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
ENSMUST00000028880.10	chr2	+	3316	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040683	129053536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUST00000028892.11	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126467	130121228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUST00000028909.5	chr2	-	2419	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	0	0	0	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112492	144092042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ENSMUST00000028916.15	chr2	+	2779	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUST00000028917.7	chr2	+	1350	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
ENSMUST00000028921.6	chr2	+	3434	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	0	0	0	multi-exon	FALSE	canonical	3	956	junction_9	74.1082057489866	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	10	True	AATAAA	-22	NA	146854915	146919920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ENSMUST00000028938.7	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	2277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717496	148713641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUST00000028948.5	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
ENSMUST00000028949.16	chr2	+	1364	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000028964.14	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174573	152158253	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ENSMUST00000028972.9	chr2	-	1273	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
ENSMUST00000028997.8	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	-8	True	AATATA	-16	NA	172212426	172198115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUST00000029005.4	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	False	NA	16	True	AATAAA	-16	NA	172282475	172311828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUST00000029013.10	chr2	+	1742	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	0	0	0	0	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTCCAAGTTTCTC	NA	False	NA	85	True	NA	NA	NA	172841909	172857532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
ENSMUST00000029047.12	chr3	-	2288	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGAGTTTCTTTAGT	NA	False	NA	1	True	ATTAAA	-20	NA	10505147	10483205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUST00000029082.9	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	1706	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUST00000029090.9	chr2	+	1655	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180351909	180360526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUST00000029092.13	chr2	+	2714	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGTGCTTGCTTCAC	4034	False	NA	25	True	NA	NA	NA	180609026	180624319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUST00000029147.16	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	23.0952135493242	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3106	False	NA	-2	True	AATAAA	-17	NA	155986106	155965558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ENSMUST00000029149.13	chr2	-	2711	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAAAATTTTCGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156022087	155989168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUST00000029214.14	chr3	+	2010	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	1850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762655	32781122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUST00000029252.8	chr3	-	1891	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUST00000029259.10	chr3	-	2455	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCTGTAGTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	36054827	36013981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
ENSMUST00000029269.12	chr3	+	1617	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	15	True	AATAAA	-23	NA	36606754	36619876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
ENSMUST00000029277.13	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ENSMUST00000029316.16	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	2107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUST00000029344.10	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	FALSE	canonical	3	661	junction_4	69.2886394407882	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUST00000029382.13	chr3	+	1752	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	2609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498671	79510957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUST00000029386.14	chr3	-	2377	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACCTTTCAAGTCCTTC	3584	False	NA	0	True	AATAAA	-30	NA	79536170	79511094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ENSMUST00000029387.15	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433241	58464922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUST00000029388.10	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4369	False	NA	NA	False	AATAAA	-14	NA	79536385	79540127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_79536664_79538435
ENSMUST00000029414.12	chr3	-	2957	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2716	False	NA	-1	True	ATTAAA	-20	NA	65300044	65287075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
ENSMUST00000029446.13	chr3	+	4318	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927741	102965502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUST00000029476.9	chr3	+	2810	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_4	8.07774721070176	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTGTGAAGTTCTGT	NA	False	NA	18	True	AATAAA	-17	NA	97808505	97830592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUST00000029480.9	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6850	False	NA	-9	True	AATAAA	-18	NA	108819043	108810122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUST00000029546.15	chr3	+	1101	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
ENSMUST00000029549.16	chr3	+	2230	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	1530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986846	90008208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUST00000029564.12	chr3	+	1194	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGGAGACTGATGATT	140	False	NA	21	True	AATAAA	-20	NA	89366424	89376320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUST00000029565.11	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
ENSMUST00000029570.9	chr3	-	2782	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456326	116424812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUST00000029588.10	chr3	-	2121	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUST00000029610.9	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	576	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065750	131027067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ENSMUST00000029626.9	chr3	+	1456	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695073	129707752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUST00000029643.15	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129625045	129618560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUST00000029644.16	chr3	+	1226	12	FSM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	0	0	0	0	multi-exon	TRUE	canonical	3	471	junction_4	36.8801946894343	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTATATATTTAT	NA	False	NA	21	True	AATAAA	-28	NA	133015870	133083839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
ENSMUST00000029663.11	chr3	-	1126	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389645	132366259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
ENSMUST00000029666.14	chr3	+	2600	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270528	131349432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUST00000029674.8	chr3	-	1599	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTCTTTGTGTGGCC	1612	False	NA	NA	False	AATAAA	-14	NA	89245335	89240696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUST00000029679.4	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUST00000029684.15	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUST00000029692.15	chr3	+	1204	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2217	False	NA	74	True	NA	NA	NA	88624144	88637034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUST00000029696.11	chr3	+	2981	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAATGTGCATTGTT	8	True	NA	16	True	AATAAA	-16	NA	88593109	88620231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
ENSMUST00000029698.15	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUST00000029707.13	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1719	False	NA	36	True	TTTAAA	-25	NA	87950414	87963297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUST00000029708.8	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUST00000029722.7	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	30595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ENSMUST00000029740.14	chr3	+	2209	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGCTTCAGCGTCTCAA	4795	False	NA	14	True	AATAAA	-21	NA	96634979	96698468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ENSMUST00000029741.9	chr3	-	2390	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	False	NA	NA	False	CATAAA	-34	NA	96634944	96618805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
ENSMUST00000029752.15	chr3	-	2400	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	0	0	0	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ENSMUST00000029759.16	chr3	-	2741	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179757	123161945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUST00000029773.13	chr3	+	2049	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	0	0	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	2768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220145	121251856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUST00000029786.14	chr3	+	1612	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAGAACTTC	8490	False	NA	NA	False	NA	NA	NA	94350631	94356015	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
ENSMUST00000029804.13	chr3	-	2686	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195276	138164716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUST00000029814.10	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191371	135277165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUST00000029842.9	chr3	+	1949	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_2	11.5	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630016	145640111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145630271_145636160_145636450_145638705
ENSMUST00000029875.4	chr4	+	2339	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAGAGAAAATGATAAAT	21	False	NA	-79	True	NA	NA	NA	14864075	14915176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ENSMUST00000029909.3	chr4	+	2651	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	-10	True	NA	11	True	NA	NA	NA	21879672	21912162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUST00000029912.11	chr4	+	2745	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAACAGACTTAATGTT	7849	False	NA	NA	False	TATAAA	-13	NA	6365649	6396284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUST00000029915.6	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ENSMUST00000029920.15	chr3	+	2239	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824380	144859650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUST00000029938.10	chr3	+	1455	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470805	142489367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUST00000029968.14	chr4	+	1868	20	FSM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_1	51.5992441268264	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	-12	True	NA	12	True	AATAGA	-27	NA	34614956	34660167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUST00000029970.14	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-21	True	NA	-13	True	AATAAA	-14	NA	34687438	34663256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUST00000029972.4	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778423	34768663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34769148_34771257_34771415_34778278
ENSMUST00000030003.10	chr4	-	1077	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	581	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	-22	True	NA	-1	True	AATAAA	-17	NA	45320629	45316612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
ENSMUST00000030015.6	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	-14	True	NA	NA	False	ATTAAA	-27	NA	46389437	46379863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ENSMUST00000030028.5	chr4	-	2624	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	0	0	0	0	multi-exon	TRUE	canonical	3	625	junction_9	43.7020339182862	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGCTTCCAGTTCTTA	20	True	NA	NA	False	AATAAA	-29	NA	48279558	48193322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUST00000030030.15	chr4	-	3102	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
ENSMUST00000030078.12	chr4	+	2611	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGCCTTTTATTTC	0	True	NA	20	True	NA	NA	NA	59581562	59618689	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
ENSMUST00000030091.10	chr4	-	1805	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ENSMUST00000030102.12	chr4	+	4196	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170172	74324097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
ENSMUST00000030103.9	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_75196007_75196217
ENSMUST00000030117.5	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	1702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ENSMUST00000030128.6	chr4	+	1519	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	0	True	NA	14	True	AATAAA	-16	NA	40948406	40965303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUST00000030145.9	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUST00000030154.7	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_41465181_41477513_41477648_41480245
ENSMUST00000030164.8	chr4	-	3316	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	0	0	0	0	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	2067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	10011	False	NA	-15	True	AATAAA	-18	NA	43000507	42979962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUST00000030181.12	chr4	+	817	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-26	True	NA	14	True	AGTAAA	-45	NA	43493361	43495921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
ENSMUST00000030192.5	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	-12	True	NA	-7	True	AATAAA	-14	NA	43656466	43654228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUST00000030206.10	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	18	True	TATAAA	-18	NA	83335960	83371577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ENSMUST00000030254.15	chr4	+	1898	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUST00000030288.14	chr4	-	2871	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059469	108918851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUST00000030296.9	chr4	+	1359	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	1204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCCTTTGGTTACTGG	NA	False	NA	28	True	ATTAAA	-22	NA	108691797	108719324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
ENSMUST00000030311.11	chr4	+	2139	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCCTTTTCCTGTGTT	NA	False	NA	10	True	AATAAA	-11	NA	94502727	94581466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
ENSMUST00000030317.14	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ENSMUST00000030326.10	chr4	-	2460	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
ENSMUST00000030340.15	chr4	-	2640	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGGCTTTTACTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107975729	107901035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ENSMUST00000030348.6	chr4	+	692	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	991	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATATGTGAATTCTC	NA	False	NA	50	True	AATAAA	-35	NA	107736951	107744621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
ENSMUST00000030360.11	chr4	-	1755	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107110729	107090710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
ENSMUST00000030361.11	chr4	+	1775	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035595	107058193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUST00000030365.6	chr4	-	1498	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTCTGTGAGATATTA	NA	False	NA	-8	True	AATAAA	-23	NA	106924065	106913070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
ENSMUST00000030381.8	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ENSMUST00000030385.13	chr4	-	1443	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	22	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5505	False	NA	-4	True	AATAAA	-30	NA	119279617	119275726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119276491_119278776_119278881_119279042
ENSMUST00000030391.9	chr2	+	2838	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172391512	172400542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ENSMUST00000030395.9	chr4	+	733	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052502	119058495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_119052684_119053068_119053219_119058093
ENSMUST00000030401.14	chr4	-	525	3	FSM	ENSMUSG00000028648.14	ENSMUST00000030401.14	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	1318	junction_2	395	1536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1832	False	NA	-25	True	AATAAA	-17	NA	123611995	123606502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_123606720_123609656_123609875_123611905
ENSMUST00000030404.5	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_9	90.3078411481501	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUST00000030412.11	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730034	122752871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUST00000030417.10	chr4	-	1448	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGAAGCTTTATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	137085010	137049072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUST00000030432.8	chr4	+	1418	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673758	135689928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
ENSMUST00000030436.12	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135599766_135600205_135600411_135600984
ENSMUST00000030446.15	chr4	-	1489	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTCCTTTGTTCCT	NA	False	NA	-8	True	NA	NA	NA	116851610	116847161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUST00000030451.10	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUST00000030453.5	chr4	-	2106	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	0	0	0	0	multi-exon	TRUE	canonical	3	184	junction_2	7.07106781186548	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCATGTTTCCTTGAAC	NA	False	NA	NA	False	ACTAAA	-25	NA	116565603	116559475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
ENSMUST00000030455.15	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508877	116493706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUST00000030456.14	chr4	-	2520	16	FSM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_15	334.076930594669	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116485138	116458805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528_116484627_116485086
ENSMUST00000030475.3	chr4	-	2439	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTTTCTTGAGATTTG	NA	False	NA	NA	False	ATTAAA	-38	NA	115911073	115890038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
ENSMUST00000030501.15	chr4	+	2960	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	2441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTCATGATGTCTGTT	NA	False	NA	6	True	NA	NA	NA	118477995	118484973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
ENSMUST00000030538.5	chr4	+	2120	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032040	138039939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUST00000030551.11	chr4	-	2522	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	0	0	0	0	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	600	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	-2	True	AATAAA	-24	NA	137523695	137469043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
ENSMUST00000030563.6	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	9278	False	NA	25	True	AATAAA	-32	NA	130001348	130021927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUST00000030583.13	chr4	+	986	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2869	False	NA	22	True	ATTAAA	-26	NA	128887016	128902194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
ENSMUST00000030586.15	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517740	129513066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
ENSMUST00000030610.3	chr4	-	2321	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271909	129247420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ENSMUST00000030622.3	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUST00000030626.12	chr4	-	1204	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642335	134625159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
ENSMUST00000030636.11	chr4	+	1060	5	FSM	ENSMUSG00000028832.12	ENSMUST00000030636.11	1060	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	251.409029273016	3594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195630	134201154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUST00000030642.3	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	1413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5380	False	NA	19	True	AATAAA	-21	NA	126571422	126603507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
ENSMUST00000030644.8	chr4	-	1994	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_2	27	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTATCTCTTGCTTT	7668	False	NA	7	True	NA	NA	NA	133972903	133970599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133972242_133972335_133972399_133972614
ENSMUST00000030651.9	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	9226	False	NA	-5	True	ATTAAA	-22	NA	133856100	133854716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133855118_133855228_133855397_133855926
ENSMUST00000030661.14	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUST00000030665.7	chr4	-	1316	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	0	0	0	0	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	3858	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCCTCGTCTAGAC	4460	False	NA	NA	False	ATTAAA	-19	NA	133273307	133259852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
ENSMUST00000030675.8	chr4	+	937	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940717	125949325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
ENSMUST00000030684.8	chr4	+	2366	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGGAACTGTGTTCGCTT	NA	False	NA	24	True	ATTAAA	-18	NA	124923784	124949169	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
ENSMUST00000030702.14	chr4	-	2037	7	FSM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	9.9121138007995	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570480	132554239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUST00000030709.9	chr4	-	2006	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCGTGAGGGATCACAGC	NA	False	NA	-1	True	AATAAA	-31	NA	132484563	132460276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
ENSMUST00000030724.9	chr4	-	3475	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	0	0	0	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	-31	True	AATAAA	-22	NA	132237812	132219342	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
ENSMUST00000030726.13	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
ENSMUST00000030730.14	chr4	-	1130	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2316	False	NA	0	True	AATAAA	-17	NA	132056849	132039073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUST00000030734.5	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	912	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608568	124626253	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUST00000030738.8	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUST00000030742.11	chr4	+	1337	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570780	131595097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUST00000030760.15	chr4	-	1906	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	0	0	0	0	multi-exon	TRUE	canonical	3	362	junction_3	45.6883855200484	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8485	False	NA	-10	True	AATAAA	-22	NA	140805668	140793822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ENSMUST00000030771.12	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	False	NA	3	True	AATAAA	-30	NA	21990249	21962264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ENSMUST00000030795.10	chr5	-	2569	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782465	24770342	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
ENSMUST00000030797.4	chr4	-	2120	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ENSMUST00000030800.13	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650285	24646036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUST00000030805.14	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	5551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994383	150981589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUST00000030816.4	chr4	+	2457	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188602	149205104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
ENSMUST00000030842.8	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUST00000030845.13	chr4	-	1238	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTAAATCAATTTTTCT	1652	False	NA	34	True	ACTAAA	-20	NA	149569655	149553015	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
ENSMUST00000030872.12	chr5	-	2103	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	0	0	0	0	multi-exon	TRUE	canonical	3	527	junction_10	41.6678895284064	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755373	22691486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ENSMUST00000030882.12	chr5	+	1615	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	0	0	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942138	21962150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUST00000030895.12	chr4	+	1598	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
ENSMUST00000030901.9	chr4	+	2368	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCACTGTGTACCGTCA	9960	False	NA	21	True	AATAAA	-21	NA	155954002	155973560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUST00000030903.12	chr4	-	2413	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	NA	False	NA	-9	True	AATAAA	-19	NA	155845550	155825097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ENSMUST00000030914.4	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170830	155158566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUST00000030935.10	chr4	-	883	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983567	154980855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
ENSMUST00000030942.13	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUST00000030968.7	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529670	48546187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUST00000030993.8	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUST00000031011.12	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865497	41782318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUST00000031018.10	chr5	-	1042	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854971	31781782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
ENSMUST00000031024.14	chr5	+	478	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771282	31779988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
ENSMUST00000031029.15	chr5	+	2018	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	0	0	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	21	True	ATTAAA	-21	NA	31350570	31356244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ENSMUST00000031038.11	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUST00000031061.12	chr5	-	3010	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCTGTATCTTTTATT	NA	False	NA	2	True	AATAAA	-27	NA	52347856	52307544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ENSMUST00000031073.10	chr5	+	993	7	FSM	ENSMUSG00000029177.10	ENSMUST00000031073.10	993	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	786.892358161733	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9263	False	NA	40	True	AATAAA	-24	NA	30824317	30831753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30824458_30826342_30826397_30827081_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000031103.14	chr5	-	2550	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593292	65570563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
ENSMUST00000031117.13	chr5	-	1894	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	11.5998084275369	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATCTCATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-45	NA	69749683	69732343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUST00000031143.13	chr5	+	1747	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288117	76303326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUST00000031145.7	chr5	-	1181	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76479003	76459973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUST00000031160.16	chr5	+	2482	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	0	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	286	False	NA	15	True	ATTAAA	-18	NA	77099153	77115352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000031243.15	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	3915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000031268.8	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
ENSMUST00000031287.12	chr5	+	1835	7	FSM	ENSMUSG00000029344.16	ENSMUST00000031287.12	1835	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTAGCTTTCTTCTCTT	NA	False	NA	27	True	AATAAA	-37	NA	112424556	112463227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000031311.10	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUST00000031349.9	chr5	+	1115	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	0	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2220	False	NA	10	True	AATAAA	-24	NA	124621196	124629187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124621310_124628185
ENSMUST00000031351.11	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254161	124256259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUST00000031355.10	chr5	+	3898	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCTCTGTCATTGTTC	NA	False	NA	10	True	AATAAA	-18	NA	92285796	92350654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
ENSMUST00000031383.14	chr5	+	2377	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	8725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	342	False	NA	21	True	AATATA	-23	NA	129097132	129101387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUST00000031385.7	chr5	-	681	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAACATTATTTCCTT	8965	False	NA	NA	False	NA	NA	NA	123662196	123655648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000031419.6	chr5	-	1388	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
ENSMUST00000031420.11	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
ENSMUST00000031472.12	chr5	-	1041	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	False	NA	4	True	AATAAA	-28	NA	110434052	110422147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUST00000031481.13	chr5	-	1563	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031481.13	1563	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	204.990146104636	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928525	110921532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928419
ENSMUST00000031483.15	chr5	-	1814	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
ENSMUST00000031508.5	chr5	+	1088	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACTTTATTGAGCAT	2414	False	NA	44	True	AATAAA	-36	NA	115479283	115481628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115479477_115480733
ENSMUST00000031519.14	chr5	-	1370	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	9907	False	NA	-1	True	AATAAA	-20	NA	115324367	115306747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
ENSMUST00000031524.11	chr5	-	1870	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	356	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9774	False	NA	-4	True	AATAAA	-18	NA	115257405	115248357	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ENSMUST00000031531.14	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139809829_139811882_139812120_139812476
ENSMUST00000031534.9	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ENSMUST00000031536.8	chr5	-	1443	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	12	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3901	False	NA	-5	True	AAAACA	-37	NA	140317653	140313428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_140314536_140316734_140317025_140317607
ENSMUST00000031539.12	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	7720	False	NA	-12	True	AATAAA	-14	NA	140375017	140326057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ENSMUST00000031560.14	chr5	-	3020	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGTGGCTCATCTCTC	NA	False	NA	2	True	AATAAA	-36	NA	114582121	114569094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUST00000031565.15	chr5	+	2675	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946097	142958940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
ENSMUST00000031587.13	chr5	+	1985	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUST00000031599.9	chr5	-	1573	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_120748028_120749442_120749795_120750338
ENSMUST00000031613.11	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
ENSMUST00000031621.11	chr5	-	1769	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951671	143924726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUST00000031625.15	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	722	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020639	145045571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUST00000031692.12	chr5	+	1758	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8669	False	NA	29	True	ATTAAA	-24	NA	135197136	135210709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
ENSMUST00000031728.5	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_1	0	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1639	False	NA	-33	True	AATAAA	-19	NA	137500780	137499700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137500342_137500540
ENSMUST00000031731.14	chr5	-	1626	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4023	False	NA	-2	True	AATAAA	-21	NA	137609749	137603364	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
ENSMUST00000031734.16	chr5	+	3078	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGGTGTGTGCCTGCC	2184	False	NA	25	True	AATAAA	-27	NA	137627382	137639356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
ENSMUST00000031739.6	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ENSMUST00000031766.12	chr6	-	2001	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	5426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1567	False	NA	-9	True	AATAAA	-17	NA	7693254	7675168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUST00000031779.17	chr6	+	3229	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348104	29376674	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUST00000031788.9	chr6	-	1825	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2839	False	NA	-1	True	AATAAA	-20	NA	52617374	52523212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
ENSMUST00000031793.8	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
ENSMUST00000031795.8	chr6	+	3009	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	36	True	CATAAA	-14	NA	56809043	56856343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
ENSMUST00000031810.15	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUST00000031841.9	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUST00000031862.14	chr6	+	1889	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	0	0	0	0	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447509	51460684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUST00000031866.9	chr6	-	3960	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTGCTCATAGAAAAG	4148	False	NA	NA	False	ATTAAA	-15	NA	35516823	35485840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
ENSMUST00000031976.14	chr6	+	2155	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755971	65913360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUST00000031985.13	chr6	-	3046	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397396	39374737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUST00000032078.9	chr6	+	2441	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	10052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4610	False	NA	16	True	AGTAAA	-18	NA	85428495	85445457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUST00000032141.14	chr6	+	1464	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2964	False	NA	44	True	AATAAA	-30	NA	87890916	87913611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ENSMUST00000032165.16	chr6	+	1675	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	0	0	0	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTTTTTATATTTTAC	NA	False	NA	31	True	AATAAA	-31	NA	88442390	88474554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
ENSMUST00000032168.7	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	9095	False	NA	5	True	AATAAA	-39	NA	88495887	88480560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUST00000032169.8	chr6	-	1845	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6964	False	NA	-4	True	AATAAA	-21	NA	88818882	88812895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
ENSMUST00000032172.14	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	False	NA	-5	True	AATAAA	-32	NA	89572634	89360132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUST00000032175.11	chr6	+	3052	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527786	90576151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUST00000032183.6	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	9688	False	NA	NA	False	AATAAA	-30	NA	91450684	91465445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUST00000032211.5	chr6	-	2125	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	0	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATTTTGTTAAGGTG	9980	False	NA	NA	False	NA	NA	NA	122587046	122582361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122584095_122586654
ENSMUST00000032214.14	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	2490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ENSMUST00000032220.15	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
ENSMUST00000032237.8	chr6	-	4345	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	0	0	0	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8285	False	NA	-1	True	ATTAAA	-16	NA	118396435	118360341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
ENSMUST00000032264.9	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	False	NA	34	True	AATAAA	-38	NA	129510122	129519309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUST00000032283.12	chr6	-	2610	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334390	120301283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
ENSMUST00000032307.12	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	131270207	131261350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUST00000032326.11	chr6	+	1764	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	0	0	0	0	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6574	False	NA	20	True	ATTAAA	-20	NA	134988574	135000739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
ENSMUST00000032372.7	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ENSMUST00000032373.12	chr6	-	1304	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239395.2	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453683	142435974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUST00000032398.15	chr6	+	2163	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	0	0	0	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023185	113045234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUST00000032406.15	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUST00000032409.15	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
ENSMUST00000032425.7	chr6	-	1985	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGCTTCTGTGGGTTCT	NA	False	NA	2	True	ATTAAA	-29	NA	113508613	113491834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUST00000032429.9	chr6	+	814	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
ENSMUST00000032440.6	chr6	-	1353	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	0	0	0	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	1233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-11	True	NA	-10	True	AATAAA	-23	NA	113717704	113705022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ENSMUST00000032461.12	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUST00000032476.11	chr6	-	3959	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTTTCCCCCTCTTG	9816	False	NA	-4	True	AATAAA	-29	NA	122719704	122704767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUST00000032480.14	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUST00000032492.9	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	2988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUST00000032503.12	chr6	-	1405	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTAGCTCTCTGATTTAT	6166	False	NA	NA	False	NA	NA	NA	128120523	127940869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
ENSMUST00000032508.11	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	1482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ENSMUST00000032561.9	chr7	-	2215	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_9	117.461666323765	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUST00000032573.8	chr7	+	694	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	21	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18618604	18624366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_18618899_18623202_18623325_18624088
ENSMUST00000032635.14	chr7	-	3197	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUST00000032661.14	chr7	+	2362	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2892	False	NA	7	True	AATAAA	-21	NA	43256648	43267709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUST00000032701.14	chr7	-	1620	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAATTCTCTTAAAATA	NA	False	NA	-13	True	AATAAA	-33	NA	35237170	35193036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUST00000032704.12	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
ENSMUST00000032705.13	chr7	+	3508	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033594	35091714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUST00000032723.9	chr7	+	955	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
ENSMUST00000032726.14	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343155	65351650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000032735.8	chr7	-	2248	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	False	NA	-3	True	NA	NA	NA	64042016	64026274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
ENSMUST00000032749.12	chr7	+	2574	23	FSM	ENSMUSG00000030534.14	ENSMUST00000032749.12	2574	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_6	14.9188576657057	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTTTTTTGTTTGT	NA	False	NA	17	True	AATAAA	-21	NA	79919396	79941327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUST00000032809.10	chr7	+	1111	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000032818.13	chr7	+	1958	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416228	28437569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
ENSMUST00000032823.5	chr7	-	2611	8	FSM	ENSMUSG00000030602.14	ENSMUST00000032823.5	2611	8	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_7	25.4076960861894	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTATGTGTGTG	NA	False	NA	-5	True	ATTAAA	-19	NA	28267662	28258245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458
ENSMUST00000032824.10	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUST00000032825.14	chr7	-	2125	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGTGCCTCCTCATT	NA	False	NA	-6	True	AATACA	-18	NA	78798808	78783516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
ENSMUST00000032839.13	chr7	-	2269	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	-3	True	AATAAA	-18	NA	78497011	78477221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
ENSMUST00000032840.5	chr7	+	1056	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78432866	78442737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000032841.7	chr7	-	1134	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGACCTACTGGGC	NA	False	NA	NA	False	AGTAAA	-18	NA	78432837	78424983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
ENSMUST00000032842.13	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUST00000032843.9	chr7	-	2259	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGGAGGTCCCTG	6020	False	NA	NA	False	NA	NA	NA	90125209	90116645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUST00000032844.7	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1645	False	NA	NA	False	AATAAA	-19	NA	90106437	90099907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ENSMUST00000032865.17	chr7	-	1585	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84255150	84234366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
ENSMUST00000032882.9	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	2164	junction_2	233	1617	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	False	NA	21	True	ATTAAA	-20	NA	97049209	97057009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_97049565_97056072_97056217_97056825
ENSMUST00000032884.16	chr7	+	937	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7837	False	NA	19	True	AATAAA	-19	NA	101545634	101548745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
ENSMUST00000032887.4	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6625	False	NA	-2	True	AATAAA	-16	NA	118132579	118124284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
ENSMUST00000032888.10	chr7	-	2171	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	0	0	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTGTTAACTCTGA	NA	False	NA	-11	True	ATTAAA	-25	NA	117728885	117718113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUST00000032895.15	chr7	+	1685	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103603	116139819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUST00000032899.12	chr7	+	1479	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	2126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692535	115704445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUST00000032906.11	chr7	-	994	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2034	False	NA	0	True	ATTAAA	-27	NA	114235592	114230712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ENSMUST00000032907.9	chr7	-	830	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAACCATGGTGGTCA	2079	False	NA	NA	False	AATAAA	-16	NA	114235547	114232527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
ENSMUST00000032910.13	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000032915.8	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7925	False	NA	-6	True	AATACA	-13	NA	126641643	126626902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUST00000032926.12	chr7	-	941	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6219	False	NA	-2	True	AATAAA	-14	NA	126497448	126485391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
ENSMUST00000032934.12	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	6959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398426	126394405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUST00000032936.8	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	1739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5070	False	NA	NA	False	AATAAA	-15	NA	126391668	126385037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
ENSMUST00000032944.9	chr7	+	1148	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTCATGGAACAAGGG	NA	False	NA	12	True	AATAAA	-18	NA	126365505	126374817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
ENSMUST00000032969.14	chr7	-	3069	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770772	99731317	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUST00000032988.10	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
ENSMUST00000032994.15	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
ENSMUST00000032998.13	chr7	-	1908	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	0	0	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	31980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8335	False	NA	-12	True	AATAAA	-29	NA	99132945	99127102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUST00000033006.14	chr7	-	1120	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090768	125066811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUST00000033008.10	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_6	196.061655709387	4283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUST00000033012.9	chr7	-	3346	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113853946	113814793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ENSMUST00000033025.7	chr7	+	1369	11	FSM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	88.7783757454483	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGTACAATGACATTC	6824	False	NA	31	True	AATAAA	-31	NA	122977204	123029581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUST00000033060.14	chr7	+	2140	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGGGATTTATTTGA	5430	False	NA	NA	False	AATAAA	-38	NA	44865176	44883068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUST00000033070.9	chr7	+	1579	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGATTCCTCGCTCCTTT	NA	False	NA	92	True	NA	NA	NA	127511687	127525009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
ENSMUST00000033074.8	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127492664_127493676_127493787_127494580
ENSMUST00000033075.14	chr7	+	1456	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ENSMUST00000033086.8	chr7	+	1570	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172575	127182479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUST00000033093.10	chr7	-	867	6	FSM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_5	352.488638114762	1342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9915	False	NA	-2	True	AATAAA	-22	NA	45116322	45111120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUST00000033095.10	chr7	+	2402	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070661	127075930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUST00000033131.12	chr7	+	1119	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	0	0	0	0	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
ENSMUST00000033135.9	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUST00000033154.8	chr7	+	2199	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	0	0	0	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758661	121769096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ENSMUST00000033156.5	chr7	+	1532	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732263	121748267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUST00000033171.15	chr7	-	1772	8	FSM	ENSMUSG00000030881.16	ENSMUST00000033171.15	1772	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	44.3170396123207	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAGTGAGGTCAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	105289521	105284827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287552_105288215_105288313_105288531_105288673_105289451
ENSMUST00000033176.7	chr7	+	1896	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATCCTCTCAGCTGGT	NA	False	NA	22	True	AGTAAA	-14	NA	120234398	120258747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUST00000033182.10	chr7	+	1795	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGTGGGGACAGAGGG	NA	False	NA	28	True	AATAAA	-18	NA	105385798	105392132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUST00000033210.13	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701575	119720209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUST00000033236.9	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ENSMUST00000033241.6	chr7	+	1612	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212367	132308149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
ENSMUST00000033257.15	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ENSMUST00000033282.5	chr7	+	1244	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1307	False	NA	23	True	AATAAA	-24	NA	133311061	133322874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUST00000033290.12	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
ENSMUST00000033313.3	chrX	+	2324	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGTTACAGTTTTAT	NA	False	NA	84	True	AATAAA	-19	NA	12454039	12483288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUST00000033333.13	chr7	-	1703	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351486	109335040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUST00000033335.6	chr7	+	1028	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302896	109311396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUST00000033383.3	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUST00000033388.12	chr7	+	2015	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468871	144474871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
ENSMUST00000033407.13	chr7	-	2913	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	0	0	0	0	multi-exon	TRUE	canonical	3	340	junction_7	190.956545694956	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	-18	True	AATAAA	-16	NA	144024482	143989469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUST00000033433.3	chrX	+	1747	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
ENSMUST00000033450.3	chrX	-	2651	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTGGAAAATTTCCATT	NA	False	NA	-19	True	ATTAAA	-15	NA	51254129	51141897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
ENSMUST00000033478.5	chrX	-	3659	26	FSM	ENSMUSG00000031139.17	ENSMUST00000033478.5	3659	26	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_25	175.787125808462	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACTCTGGTGTTCGTGT	NA	False	NA	-5	True	AATAAA	-26	NA	59193003	59101318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59192833
ENSMUST00000033486.6	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	2397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
ENSMUST00000033489.8	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUST00000033497.9	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	296	False	NA	-1	True	AATAAA	-22	NA	7765508	7760757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ENSMUST00000033500.5	chrX	-	1077	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794846	7790514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7791453_7794707
ENSMUST00000033519.3	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
ENSMUST00000033540.6	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	3361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	False	NA	14	True	ATTAAA	-20	NA	74557904	74578548	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUST00000033541.5	chrX	+	2562	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	537	False	NA	NA	False	AATAAA	-21	NA	74426004	74440065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUST00000033570.6	chrX	+	1518	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGGACTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	99537896	99559731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUST00000033597.9	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108057010	108048139	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
ENSMUST00000033662.9	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUST00000033673.7	chrX	+	2562	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	2061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473160	100492197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUST00000033683.8	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	36405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101233000	101228546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ENSMUST00000033691.5	chrX	+	812	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	102458072	102468186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
ENSMUST00000033715.5	chrX	+	2168	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTTGTGTTGCTGGCT	NA	False	NA	NA	False	AATAAA	-6	NA	71962162	72002120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUST00000033720.12	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	4501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUST00000033723.4	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ENSMUST00000033737.15	chrX	-	1380	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000033749.9	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUST00000033754.15	chrX	+	3594	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUST00000033763.15	chrX	-	962	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	False	NA	-1	True	AATAAA	-38	NA	72965550	72960478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000033776.15	chrX	+	2804	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	0	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	1758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139459	74153383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUST00000033805.15	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857438	139849177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUST00000033809.4	chrX	+	1965	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	0	0	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	3222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUST00000033839.9	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUST00000033847.5	chr8	+	2841	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTTGTTTTTTCAA	NA	False	NA	15	True	AATAAA	-25	NA	18896294	18933437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
ENSMUST00000033877.6	chr8	-	1899	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACCAGAGCTTTTAAA	NA	False	NA	-26	True	ATTAAA	-35	NA	27618708	27613391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ENSMUST00000033880.7	chr8	+	1997	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	0	0	0	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	7709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTGGTTCCCAGTGG	NA	False	NA	15	True	NA	NA	NA	27750356	27766702	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUST00000033901.11	chr8	+	1359	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUST00000033905.13	chr8	-	2285	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ENSMUST00000033920.6	chr8	+	1181	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGACATTATGGAATGT	NA	False	NA	-61	True	NA	NA	NA	53964761	53976373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
ENSMUST00000033933.8	chr8	+	1860	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTGTTCTTTGTACT	NA	False	NA	9	True	AATAAA	-16	NA	34621729	34637975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ENSMUST00000033934.5	chr8	+	1515	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901376	22919681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUST00000033938.7	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143434	23118141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
ENSMUST00000033950.7	chr8	-	1349	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCAAATGTCTTTTTTT	NA	False	NA	-22	True	AAAACA	-3	NA	23727675	23716631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUST00000033973.14	chr8	+	2921	8	FSM	ENSMUSG00000031568.17	ENSMUST00000033973.14	2921	8	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_6	33.1305395830075	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTATATGTTTTGT	NA	False	NA	7	True	AATAAA	-17	NA	47986698	48005860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
ENSMUST00000033983.6	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUST00000033999.8	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870111	41850495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
ENSMUST00000034012.10	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964795	40945580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUST00000034015.11	chr8	-	2044	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186826	65171172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUST00000034051.7	chr8	+	1640	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8860	False	NA	104	True	AGTAAA	-19	NA	46428564	46449995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ENSMUST00000034094.11	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUST00000034097.8	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615175	96590761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUST00000034111.10	chr8	+	3595	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235996	79460632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
ENSMUST00000034132.13	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUST00000034136.12	chr8	+	3639	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCAGCTTGGTCAATAA	NA	False	NA	13	True	AATAAA	-19	NA	86219204	86254189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
ENSMUST00000034138.7	chr8	-	2919	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	1108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281973	86264261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUST00000034141.18	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350671	87443259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000034147.4	chr8	-	1675	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500789	83490249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ENSMUST00000034164.6	chr8	-	2304	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419892	110397956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUST00000034203.17	chr8	+	2737	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_8	32.668367302671	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATTGTGTTGGGTCCAG	9628	False	NA	13	True	AATAAA	-18	NA	111573665	111608859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
ENSMUST00000034205.5	chr8	+	1768	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648478	117668242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ENSMUST00000034214.8	chr8	+	511	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	8691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899291	94900196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94899504_94899754_94899821_94899963
ENSMUST00000034215.8	chr8	+	549	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	9820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905709	94906955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94905967_94906450_94906517_94906729
ENSMUST00000034220.8	chr8	+	1873	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113122	95121986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUST00000034234.15	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	9	True	AATAAA	-15	NA	95564948	95581523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
ENSMUST00000034245.16	chr8	+	1758	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058911	96074135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUST00000034249.8	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161497	96146876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUST00000034264.11	chr8	+	893	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044819	72048913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUST00000034265.11	chr8	-	1084	7	FSM	ENSMUSG00000031809.11	ENSMUST00000034265.11	1084	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.45034330760623	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCCACTGACAAAAACG	NA	False	NA	NA	False	AATAAA	-22	NA	122268693	122257518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267275_122267320_122268457
ENSMUST00000034272.9	chr8	+	1062	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995573	72000670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
ENSMUST00000034276.13	chr8	+	745	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	7811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000034300.8	chr8	+	1208	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAAGAATGGTGTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	120071226	120075661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
ENSMUST00000034303.3	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
ENSMUST00000034311.15	chr8	+	925	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	3141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71125897	71131402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
ENSMUST00000034313.13	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460941	126474974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUST00000034342.13	chr8	+	667	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4792	False	NA	10	True	ATTAAA	-22	NA	104977492	104990079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
ENSMUST00000034349.10	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUST00000034361.10	chr8	+	2916	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	0	0	0	0	multi-exon	TRUE	canonical	3	239	junction_9	14.7126551724093	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951776	105979685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUST00000034371.9	chr8	-	1698	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706061	106700144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
ENSMUST00000034375.11	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUST00000034388.10	chr8	+	2178	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	17	True	AATAAA	-17	NA	107757853	107772387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ENSMUST00000034398.12	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUST00000034415.6	chr9	+	1148	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9072	False	NA	5	True	AATAAA	-16	NA	15217509	15223400	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ENSMUST00000034426.14	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
ENSMUST00000034428.8	chr8	+	1677	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	0	0	0	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	2854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACATGTACT	NA	False	NA	NA	False	NA	NA	NA	112667334	112680244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUST00000034432.7	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	2134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580923	112495122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
ENSMUST00000034466.10	chr8	+	2984	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	5120	False	NA	34	True	AATAAA	-25	NA	125589771	125616796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUST00000034472.16	chr9	-	1942	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066689	27008679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ENSMUST00000034524.5	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ENSMUST00000034537.8	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	-2	True	ATTAAA	-24	NA	35028169	34957871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
ENSMUST00000034539.12	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUST00000034541.12	chr9	+	2993	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_4	138.528744373691	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
ENSMUST00000034543.5	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ENSMUST00000034552.8	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUST00000034564.4	chr9	-	1257	4	FSM	ENSMUSG00000032062.4	ENSMUST00000034564.4	1257	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2116	False	NA	NA	False	AATAAA	-17	NA	50657836	50650990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUST00000034570.7	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ENSMUST00000034623.8	chr9	-	1220	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1473	False	NA	-8	True	AATAAA	-17	NA	44318897	44315055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUST00000034698.9	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421548	21418850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
ENSMUST00000034700.15	chr9	-	2174	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6068	False	NA	-16	True	AATAAA	-17	NA	21504124	21499977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUST00000034737.13	chr9	+	1681	3	FSM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_73009958_73010111_73010292_73010497
ENSMUST00000034738.14	chr9	+	1543	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8580	False	NA	13	True	AATAAA	-18	NA	73020729	73030615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUST00000034740.15	chr9	+	5499	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTCCGTTACCTAAA	NA	False	NA	NA	False	AATAAA	-27	NA	72569627	72657134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
ENSMUST00000034742.8	chr9	-	1531	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUST00000034754.12	chr9	+	2464	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTTCTCTGGTGTATA	NA	False	NA	79	True	AATGAA	-19	NA	69896747	69915599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
ENSMUST00000034803.10	chr9	+	2863	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGTGTCTTTAATAA	NA	False	NA	20	True	AGTAAA	-16	NA	48966912	48990072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
ENSMUST00000034808.12	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_48503663_48514653_48514862_48516104
ENSMUST00000034815.9	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUST00000034830.9	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54672031	54680394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
ENSMUST00000034834.16	chr9	+	2432	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	9102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1664	False	NA	20	True	AATAAA	-20	NA	59563650	59586658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUST00000034848.14	chr9	+	1165	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	0	0	0	0	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	1192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858073	54865314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUST00000034856.15	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUST00000034859.15	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000034866.9	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419527	55361791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUST00000034868.14	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
ENSMUST00000034876.10	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUST00000034878.12	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700712	79676224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUST00000034883.7	chr9	+	1984	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUST00000034902.12	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78254440	78238299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
ENSMUST00000034903.7	chr9	+	977	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	3861	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	17	True	ATTAAA	-16	NA	78099228	78116631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
ENSMUST00000034904.14	chr9	+	2782	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	77824645	77891801	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
ENSMUST00000034940.11	chr9	-	2405	14	FSM	ENSMUSG00000032376.13	ENSMUST00000034940.11	2405	14	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_10	15.694946987701	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTCCAGAACTGCTCCA	NA	False	NA	-19	True	ATTAAA	-31	NA	66500240	66425158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66425861_66427378_66427447_66427554_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ENSMUST00000034945.6	chr9	+	1240	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1383	False	NA	17	True	AATAAA	-18	NA	66033892	66046237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUST00000034946.15	chr9	-	2073	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	0	0	0	0	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66032168	65995414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
ENSMUST00000034947.7	chr9	+	892	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	1748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1574	False	NA	16	True	AATAAA	-16	NA	65967512	65973905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
ENSMUST00000034953.14	chr5	-	764	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	2	True	AATAAA	-18	NA	137015683	137011047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUST00000034964.7	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9569	False	NA	14	True	AATAAA	-14	NA	64188888	64212074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUST00000034966.9	chr9	+	1538	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	0	0	0	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	27218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTTTGTTCCACATG	NA	False	NA	16	True	AATAAA	-13	NA	64080656	64085948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUST00000034983.7	chr9	-	1994	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246495	96214707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUST00000035007.10	chr9	+	3383	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	19	True	AATAAA	-15	NA	114560240	114578412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
ENSMUST00000035009.16	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUST00000035033.7	chr9	+	3050	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	0	0	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445783	98470435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
ENSMUST00000035034.10	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	-9	True	ATTAAA	-20	NA	98483713	98470782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
ENSMUST00000035038.8	chr9	+	1019	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3544	False	NA	9	True	AATAAA	-23	NA	98868425	98884074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUST00000035053.12	chr9	+	1074	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661825	109672042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUST00000035069.14	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	TRUE	canonical	3	119	junction_3	3.96074487943871	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8924	False	NA	-5	True	ATTAAA	-25	NA	110453520	110450202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
ENSMUST00000035075.13	chr9	-	1932	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	2179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775226	110768670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUST00000035079.10	chr9	-	2754	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100859	111057322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUST00000035092.7	chr9	-	1960	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGACTGACGGTATGTG	NA	False	NA	1	True	AATAAA	-26	NA	119169107	119164999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
ENSMUST00000035106.12	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	1760	False	NA	NA	False	ATTAAA	-16	NA	119939439	119953570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUST00000035113.11	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539394	121541987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_121539538_121539704_121539782_121541630
ENSMUST00000035116.12	chr9	-	2320	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916951	100864084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
ENSMUST00000035166.12	chr9	-	2404	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUST00000035194.8	chr9	-	2816	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTTCTTTATGT	NA	False	NA	-2	True	AATAAA	-24	NA	107167076	107132125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ENSMUST00000035199.13	chr9	-	3064	25	FSM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	145.554250815823	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9714	False	NA	-6	True	AAGAAA	-12	NA	107648186	107617698	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ENSMUST00000035211.14	chr9	+	2262	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6663	False	NA	18	True	CATAAA	-23	NA	107957634	107962202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
ENSMUST00000035222.6	chr9	+	1783	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5077	False	NA	3	True	NA	NA	NA	108539296	108561840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ENSMUST00000035227.8	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	False	NA	14	True	NA	NA	NA	108167627	108173697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUST00000035230.7	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174068	108179501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUST00000035237.12	chr9	+	3662	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTCCACGTTAGCTT	NA	False	NA	64	True	CATAAA	-21	NA	108225051	108269744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
ENSMUST00000035276.5	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	1654	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2490	False	NA	-1	True	AATAAA	-18	NA	126859881	126856130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126856509_126858529_126858641_126859694
ENSMUST00000035295.6	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	182110369	182103336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUST00000035301.7	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	2573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	False	NA	NA	False	AATACA	-20	NA	63463008	63468987	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUST00000035395.14	chr7	+	836	6	FSM	ENSMUSG00000030649.19	ENSMUST00000035395.14	836	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	222.801615793064	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	7749	False	NA	21	True	AATAAA	-21	NA	101545546	101548747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101545658_101546939_101546995_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUST00000035481.5	chr2	+	1325	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3825	False	NA	45	True	NA	NA	NA	128971619	128976054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUST00000035493.14	chr6	+	2147	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	3040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3734	False	NA	NA	False	AATAAA	-14	NA	117883755	117902580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUST00000035721.14	chr2	-	3522	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGCTGCTTGATTCA	NA	False	NA	98	True	AGTAAA	-23	NA	4656897	4626868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUST00000035725.7	chr6	+	1095	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_2	10.5	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGTTTATGATCTGTT	NA	False	NA	11	True	AATAAA	-21	NA	113581732	113593912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUST00000035735.11	chr10	+	934	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGCGCCTGCTAATCA	NA	False	NA	NA	False	AATACA	-21	NA	127350835	127353023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
ENSMUST00000035771.5	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	224.819680830858	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5583	False	NA	-4	True	AATAAA	-40	NA	126795047	126792829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
ENSMUST00000035775.9	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	1891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	-13	True	AATAAA	-25	NA	80691043	80688658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
ENSMUST00000035776.10	chr3	+	2429	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	926	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068036	122078920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
ENSMUST00000035780.4	chr4	+	1915	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ENSMUST00000035785.9	chr3	+	1189	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	0	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	4215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3620	False	NA	15	True	AATAAA	-17	NA	88486977	88495726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUST00000035804.9	chr18	-	1595	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATGCACATGTTTTT	2577	False	NA	8	True	AATAAA	-30	NA	46861462	46846259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUST00000035925.7	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ENSMUST00000035985.8	chr5	-	2831	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	-2	True	NA	NA	NA	142880993	142857543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
ENSMUST00000036004.16	chr15	+	1918	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	0	0	0	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148858	103153382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUST00000036023.3	chr3	-	593	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563537	48560166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_48560355_48563132
ENSMUST00000036041.15	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_4	12.8308372870802	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ENSMUST00000036125.10	chr5	-	2367	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	0	0	0	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	10021	False	NA	-4	True	AATAAA	-18	NA	134668201	134648730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000036126.7	chr14	+	1894	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045297	51058758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUST00000036158.7	chr18	+	2462	3	FSM	ENSMUSG00000033272.13	ENSMUST00000036158.7	2462	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	96	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGTTGTCCTGTCTTC	NA	False	NA	16	True	AATAAA	-34	NA	36812644	36816911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36812677_36813568_36813668_36814580
ENSMUST00000036210.7	chr16	-	2758	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6230	False	NA	-1	True	NA	NA	NA	38370620	38345498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUST00000036320.12	chr11	+	1790	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049438	5056091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
ENSMUST00000036380.14	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	-1	True	AATAAA	-21	NA	117744526	117741522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUST00000036381.10	chr14	-	2649	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969983	69954448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ENSMUST00000036418.10	chr3	-	1398	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCTTTTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	95789543	95785816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
ENSMUST00000036473.16	chr2	+	2918	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126601	32145017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ENSMUST00000036561.8	chr9	+	3845	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723943	119755652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUST00000036572.4	chr4	-	1875	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	4	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9800	False	NA	-6	True	AATAAA	-18	NA	141811615	141758302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_141759406_141764715_141765245_141811372
ENSMUST00000036649.8	chr11	+	2607	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	22.1616535684702	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	15	True	AATAAA	-17	NA	88864760	88882439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUST00000036744.8	chr19	+	1783	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806598	4815968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
ENSMUST00000036805.7	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUST00000036807.13	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_26648550_26650802_26650999_26652461
ENSMUST00000036880.8	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2125	False	NA	10	True	GATAAA	-11	NA	123951580	123958989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000036951.13	chr5	-	1240	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	4493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425690	117420718	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
ENSMUST00000036991.5	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560923	116546549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_116547550_116553465_116553530_116560171
ENSMUST00000036996.6	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	1051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293299	84298255	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84293560_84297458_84297628_84298061
ENSMUST00000037023.9	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_2	210	15029	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205960	69204495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69204596_69205434_69205535_69205770
ENSMUST00000037056.9	chr5	-	540	5	FSM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2948.80004196622	3916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	9969	False	NA	-13	True	AATAAA	-14	NA	145128402	145120518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125069_145128312
ENSMUST00000037099.9	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUST00000037190.15	chr8	+	1191	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343484	61360614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUST00000037210.9	chr2	+	1321	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_6	11.0565326201412	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTGTGTCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	71283619	71355535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUST00000037246.7	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889360	4875393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUST00000037248.10	chr7	+	2766	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTCTCAGGCTCAGT	1476	False	NA	8	True	NA	NA	NA	126461143	126464549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUST00000037260.8	chr15	+	2486	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTGTGTAATTGGCATA	NA	False	NA	10	True	AATAAA	-16	NA	75812800	75821249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_75813009_75818971
ENSMUST00000037290.12	chr10	-	2939	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ENSMUST00000037324.12	chr11	+	1440	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	0	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	4205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	411	False	NA	34	True	AATAAA	-41	NA	52122835	52137685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUST00000037337.10	chr5	+	2273	21	FSM	ENSMUSG00000039178.10	ENSMUST00000037337.10	2273	21	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	8.96994983263563	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGATATCTCTAATAATC	NA	False	NA	NA	False	ATTAAA	-22	NA	53966968	54061307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_53967201_53986691_53986765_53987796_53987843_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
ENSMUST00000037349.8	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602440	47563820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUST00000037361.9	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
ENSMUST00000037383.13	chr12	+	2737	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUST00000037489.15	chr17	+	2190	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGATATCCATATCTT	NA	False	NA	44	True	AATAAA	-44	NA	34824834	34832423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUST00000037499.6	chr2	+	955	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGACTATCTCATATTTG	NA	False	NA	NA	False	TATAAA	-22	NA	105734982	105795903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUST00000037534.8	chr11	+	1833	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUST00000037565.14	chr4	-	2558	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGACTTGCTTGTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	147726965	147696395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
ENSMUST00000037726.14	chr14	-	3416	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220695	123156382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ENSMUST00000037739.8	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUST00000037776.16	chr17	+	2594	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	3277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251605	29261871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
ENSMUST00000037783.7	chr6	+	1752	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGAACTTGTTTCTT	NA	False	NA	12	True	TATAAA	-16	NA	91855033	91876824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
ENSMUST00000037796.14	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412573	75419818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000037807.3	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83688526_83710080_83710269_83714521
ENSMUST00000037839.12	chr3	-	1610	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGCATTTGATCTATAA	NA	False	NA	-1	True	AATAAA	-45	NA	10416377	10405012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ENSMUST00000037850.7	chr18	+	2067	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309387	53353937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ENSMUST00000037928.9	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
ENSMUST00000037941.10	chr7	+	1533	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGACCTCTTCCTGT	NA	False	NA	42	True	AATAAA	-30	NA	142606475	142621671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
ENSMUST00000037967.6	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416955	73412822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73414618_73416219_73416289_73416796
ENSMUST00000038039.3	chr13	+	1957	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015661	25026136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUST00000038091.8	chr1	+	3213	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTGGAGTTTTTTGTT	NA	False	NA	22	True	AATAAA	-22	NA	180678691	180695678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUST00000038131.10	chr5	-	1317	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTATTTTGCTTACA	NA	False	NA	60	True	TTTAAA	-40	NA	151574707	151566220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
ENSMUST00000038169.8	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	2119	7679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75695378_75695520_75695694_75695894
ENSMUST00000038174.8	chr8	-	1356	9	FSM	ENSMUSG00000039720.8	ENSMUST00000038174.8	1356	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	19.421315609402	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27692575	27687486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399
ENSMUST00000038196.7	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUST00000038217.14	chr10	-	1944	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUST00000038237.8	chr11	+	2235	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ENSMUST00000038341.8	chr2	+	3668	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428691	118472072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
ENSMUST00000038411.5	chr10	+	1411	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438713	80443488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80438784_80442147
ENSMUST00000038434.4	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41712815_41713460
ENSMUST00000038439.4	chr2	-	1008	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUST00000038474.14	chr2	+	1686	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560726	31571361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUST00000038514.15	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ENSMUST00000038539.8	chr14	+	1843	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923672	54928198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54924578_54927260
ENSMUST00000038570.9	chr11	+	1926	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	11	True	ATTAAA	-11	NA	4823950	4844200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUST00000038600.4	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	False	NA	28	True	NA	NA	NA	28358077	28361190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUST00000038626.10	chr8	-	980	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
ENSMUST00000038644.5	chr11	-	820	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUST00000038671.10	chr9	-	2598	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.4070697604511	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCATCCCTTCCCA	NA	False	NA	-9	True	AATAAA	-19	NA	21199265	21184752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
ENSMUST00000038709.14	chr11	-	2417	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120135	121113413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
ENSMUST00000038772.13	chr10	-	1546	7	FSM	ENSMUSG00000034620.18	ENSMUST00000038772.13	1546	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	137.068920214937	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933061	121917164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932252_121932367_121932804
ENSMUST00000038791.15	chr7	-	1582	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305001	118287767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
ENSMUST00000038831.15	chr11	+	2378	13	FSM	ENSMUSG00000039307.17	ENSMUST00000038831.15	2378	13	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_9	6.31576510716547	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAAACTCTAATCAGCT	NA	False	NA	12	True	AATAAA	-28	NA	121095258	121113481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105996_121106162_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111689_121111988_121112061_121112164_121112326_121112417_121113038
ENSMUST00000038945.6	chr1	+	1435	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_1	0	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACTGAGTGAAATTC	6745	False	NA	22	True	AATGAA	-29	NA	135693856	135696874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135694633_135696215
ENSMUST00000038973.7	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	False	NA	85	True	ATTAAA	-32	NA	25459090	25453290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUST00000039049.16	chr7	-	967	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	-3	True	AGTAAA	-29	NA	45546138	45536268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
ENSMUST00000039088.9	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	1568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_121037049_121037353_121037428_121037554
ENSMUST00000039101.12	chr16	-	2009	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTTGTTATCAGTAG	NA	False	NA	-4	True	AATAAA	-17	NA	87237461	87230294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
ENSMUST00000039132.9	chr17	+	2376	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTGGCTGGCATAG	NA	False	NA	NA	False	AATAAA	-37	NA	33184787	33198207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUST00000039161.10	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911017	26918630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUST00000039205.11	chr17	+	2314	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGACTCTTGTTCTTTTG	NA	False	NA	11	True	AATAAA	-19	NA	80434899	80492530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
ENSMUST00000039286.5	chr10	+	2352	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144353	44240287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUST00000039506.15	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ENSMUST00000039554.7	chr2	-	2828	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657974	132646126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ENSMUST00000039562.8	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_61837020_61837242_61837345_61841978
ENSMUST00000039571.14	chr3	+	1547	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_2	10.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTAGCATCTTGTTT	NA	False	NA	5	True	ATTAAA	-19	NA	145643768	145650584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145644084_145644652_145644852_145649551
ENSMUST00000039601.10	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155414	32158984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
ENSMUST00000039608.9	chr18	+	2456	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151855	75420035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
ENSMUST00000039620.7	chr16	+	1170	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	11	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTGGTTTTTGTTTGT	NA	False	NA	20	True	ATTAAA	-22	NA	93480102	93487878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_93480502_93481934_93482043_93487215
ENSMUST00000039694.13	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579965	19541845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUST00000039758.6	chr19	-	550	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	9290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7366	False	NA	NA	False	AATAAA	-26	NA	7194981	7192517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7192850_7194763
ENSMUST00000039763.14	chr10	-	1557	8	FSM	ENSMUSG00000040006.14	ENSMUST00000039763.14	1557	8	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_3	111.32321026119	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTATTTTTAATTTTT	7463	False	NA	-1	True	AATAAA	-17	NA	7656681	7643710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7644350_7646120_7646285_7649061_7649193_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000039784.12	chr9	+	1762	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7728	False	NA	28	True	AGTAAA	-19	NA	119170359	119179365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUST00000039803.7	chr14	+	2139	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8886	False	NA	16	True	AATAAA	-16	NA	122116031	122258446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUST00000039894.13	chr13	-	1844	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	False	NA	-5	True	AATAAA	-14	NA	14214223	14172536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000039900.4	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29463677_29464916
ENSMUST00000039949.5	chr11	-	2444	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	32.4422563950167	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4403	False	NA	-5	True	AATAAA	-18	NA	94544790	94535821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ENSMUST00000040005.13	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8875	False	NA	-7	True	ATTAAA	-20	NA	93841075	93810981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUST00000040042.11	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390625	25388662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
ENSMUST00000040077.8	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
ENSMUST00000040117.15	chr13	+	3328	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5494	False	NA	8	True	AATAAA	-20	NA	51805732	51838080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ENSMUST00000040135.9	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	20	True	AATAAA	-20	NA	7543266	7554645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
ENSMUST00000040154.9	chr5	-	571	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	4036	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGACGGTACGATTTTAT	4854	False	NA	-26	True	AATAAA	-26	NA	115487040	115483700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115483986_115486623_115486767_115486897
ENSMUST00000040167.11	chr11	-	1949	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583601	40570140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUST00000040177.7	chr17	+	976	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269483	37276514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_37269595_37275248_37275325_37275725
ENSMUST00000040248.9	chr16	-	3282	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1947	False	NA	0	True	AATAAA	-18	NA	15964715	15707087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
ENSMUST00000040270.6	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUST00000040284.6	chr18	+	979	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	315	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138938	75143004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75139086_75141721_75141898_75142348
ENSMUST00000040312.7	chr2	-	2026	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185952	152179341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
ENSMUST00000040361.8	chr6	+	1789	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	6204	False	NA	27	True	AATAAA	-35	NA	48514548	48518735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
ENSMUST00000040416.8	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ENSMUST00000040421.11	chr5	+	2037	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGATGTCACTTTTTG	NA	False	NA	21	True	AATAAA	-19	NA	115417724	115435031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
ENSMUST00000040423.12	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926145	103945699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUST00000040428.4	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	529	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70129297_70129763_70129841_70130481
ENSMUST00000040430.8	chr11	-	2766	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	0	0	0	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	-11	True	AATAAA	-15	NA	101357056	101349570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ENSMUST00000040440.7	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754363	87740839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUST00000040518.6	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	1017	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959378	78978605	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ENSMUST00000040519.12	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1541	False	NA	NA	False	TTTAAA	-1	NA	111679694	111700654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUST00000040538.10	chr1	+	1948	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUST00000040560.11	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUST00000040577.5	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	550	False	NA	23	True	ATTAAA	-31	NA	76134540	76141445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
ENSMUST00000040607.6	chr6	+	743	4	FSM	ENSMUSG00000034192.6	ENSMUST00000040607.6	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	1663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGTGTCT	NA	False	NA	47	True	ATTAAA	-23	NA	91492909	91499607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000040656.8	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUST00000040735.12	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	TRUE	canonical	3	306	junction_8	20.5156038175824	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ENSMUST00000040766.9	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUST00000040776.6	chr8	-	1814	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578686	106571308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUST00000040828.7	chr17	+	1212	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTGATAATTGCTG	NA	False	NA	12	True	NA	NA	NA	34482182	34488393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
ENSMUST00000040860.3	chr18	+	1692	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ENSMUST00000040873.12	chr5	-	3024	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	8257	False	NA	-1	True	AGTAAA	-29	NA	137305936	137293965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000040881.14	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUST00000040907.8	chr17	-	2224	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTGCTTGTGTTTCCT	NA	False	NA	-4	True	NA	NA	NA	26309311	26300184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ENSMUST00000040917.14	chr9	+	499	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	0	0	0	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	4676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTCCTCCCTCTGCTT	NA	False	NA	30	True	AATAAA	-14	NA	66853367	66856794	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
ENSMUST00000040924.9	chr18	-	3098	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTCTTTAAATTAG	NA	False	NA	-13	True	AATAAA	-23	NA	14815971	14758679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000040967.9	chr5	-	2522	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2236	False	NA	-1	True	AATAAA	-20	NA	124170333	124142703	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
ENSMUST00000041003.8	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
ENSMUST00000041005.6	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314435	45321576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUST00000041008.10	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76884187	76968186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUST00000041045.14	chr3	+	1069	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	0	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	11697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570247	137572683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUST00000041053.11	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUST00000041097.13	chr7	+	2081	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448087	138484786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUST00000041100.4	chr5	+	1773	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136165007	136170466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_136165149_136168191_136168390_136169032
ENSMUST00000041122.11	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000041190.17	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149842	99140697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ENSMUST00000041208.9	chr15	-	1811	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102259194	102246686	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
ENSMUST00000041262.14	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
ENSMUST00000041264.15	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
ENSMUST00000041314.17	chr18	+	1475	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	1785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4640	False	NA	22	True	AATAAA	-16	NA	35731669	35750239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUST00000041316.15	chr12	-	1398	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188996	105183008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUST00000041364.13	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	440	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ENSMUST00000041366.14	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	529	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	9212	False	NA	30	True	AATAAA	-19	NA	136145484	136151801	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
ENSMUST00000041370.11	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUST00000041466.14	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6005	False	NA	NA	False	AATAAA	-17	NA	129924563	129932464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
ENSMUST00000041621.5	chr1	+	1485	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37911286	37915309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37911407_37913944
ENSMUST00000041640.5	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	21	True	AATAAA	-20	NA	36207112	36247290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ENSMUST00000041686.10	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ENSMUST00000041806.13	chr12	+	2690	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3345	False	NA	9	True	ATTAAA	-20	NA	83734925	83781869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
ENSMUST00000041826.14	chr3	+	2678	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643482	57742652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUST00000041830.10	chr2	+	1387	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697837	30713045	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUST00000041882.7	chr10	+	678	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	13	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCCTGGTGAAGT	NA	False	NA	43	True	AATGAA	-45	NA	80008777	80010980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80009009_80010042_80010160_80010650
ENSMUST00000041954.10	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
ENSMUST00000041998.2	chr2	+	737	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	6	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056728	179058675	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179056894_179057552_179057714_179058264
ENSMUST00000042055.10	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306050	30337817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ENSMUST00000042105.11	chr7	-	2333	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	34	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3861	False	NA	44	True	AATAAA	-24	NA	45175692	45172340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45172747_45173162_45174816_45175418
ENSMUST00000042166.11	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	195	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81412672	81419239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUST00000042191.12	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	760	False	NA	23	True	CATAAA	-12	NA	129792566	129795544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUST00000042235.15	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	49911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ENSMUST00000042334.16	chr17	+	830	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	12023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGCCTGTGATTG	NA	False	NA	1	True	AATAAA	-20	NA	28547444	28550007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000042345.8	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
ENSMUST00000042390.5	chr2	+	3755	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3965	False	NA	33	True	ATTAAA	-21	NA	25222740	25242224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
ENSMUST00000042405.8	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	2046	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8531	False	NA	0	True	ATTAAA	-14	NA	27869134	27878694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ENSMUST00000042477.13	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	False	NA	20	True	ATTAAA	-17	NA	101144532	101150375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUST00000042497.14	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6426	False	NA	3	True	AATAAA	-30	NA	4062806	4057496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUST00000042498.14	chr1	-	4427	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93373408	93335483	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
ENSMUST00000042564.17	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	1378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
ENSMUST00000042575.7	chr4	-	3856	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	19	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	9561	False	NA	0	True	AATAAA	-28	NA	40269850	40259600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40263082_40268303_40268502_40269673
ENSMUST00000042662.10	chr14	-	2240	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_1	24.5	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTCCTTTTGATATAC	NA	False	NA	NA	False	AATAAA	-18	NA	99283556	99271979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_99273947_99277950_99278097_99283429
ENSMUST00000042675.9	chr4	+	1604	9	FSM	ENSMUSG00000028745.19	ENSMUST00000042675.9	1604	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	550.173836164534	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAATAAATAAAAA	NA	False	NA	-27	True	NA	NA	NA	138960693	139019094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138960789_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUST00000042700.12	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	1681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUST00000042702.7	chr15	+	1164	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUST00000042726.14	chr7	-	1784	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	0	0	0	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3611	False	NA	-14	True	AATAAA	-16	NA	30349742	30340425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUST00000042753.14	chr5	-	2368	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1474	False	NA	-9	True	AATAAA	-21	NA	3646585	3633977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUST00000042834.4	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_30725325_30729016
ENSMUST00000042901.15	chr3	+	4316	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912070	68941956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ENSMUST00000043045.10	chrX	+	1609	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGGGCGTGCTTTCCCG	4006	False	NA	22	True	AATAAA	-35	NA	7588455	7594445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000043074.14	chr19	+	508	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_1	5677.26170790109	15336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1081	False	NA	1	True	AATAAA	-13	NA	6107972	6109546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000043098.9	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014390	67012079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
ENSMUST00000043152.6	chr11	-	3877	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGAGAATGTTAATCTT	NA	False	NA	-14	True	NA	NA	NA	79853216	79824778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUST00000043269.14	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUST00000043273.16	chr7	+	884	8	FSM	ENSMUSG00000078765.12	ENSMUST00000043273.16	884	8	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_1	81.3154602866678	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGGTTTCCTTCCACC	NA	False	NA	36	True	AATAAA	-24	NA	30262745	30264790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000043286.15	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	False	NA	-16	True	AATAAA	-19	NA	70663505	70641754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUST00000043342.10	chr3	+	1576	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7758	False	NA	NA	False	TTTAAA	-6	NA	115681831	115722981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUST00000043396.15	chr12	-	2674	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_2	66.5	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGATGTTTTCCTTCCTAG	NA	False	NA	-18	True	AATAAA	-20	NA	12991915	12986093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_12987612_12989610_12990488_12991636
ENSMUST00000043419.10	chr11	-	1437	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	7411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ENSMUST00000043429.12	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_8	23.5424491839793	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682903	120614634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
ENSMUST00000043498.9	chr18	-	2032	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTAGTTAGGCCATG	NA	False	NA	-5	True	AATAAA	-21	NA	38088069	38070024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUST00000043517.8	chr7	-	2905	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9931	False	NA	-1	True	NA	NA	NA	19655085	19637502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
ENSMUST00000043520.5	chr8	+	2012	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957802	13990522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
ENSMUST00000043584.5	chr2	-	1598	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	2169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114714	25112171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
ENSMUST00000043675.9	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	4613	junction_2	56	927	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	False	NA	24	True	NA	NA	NA	44832040	44824514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44824765_44825948_44826110_44831907
ENSMUST00000043680.9	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUST00000043735.8	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
ENSMUST00000043757.15	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUST00000043760.15	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582366	114598652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUST00000043794.11	chr5	+	2383	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37208200	37282643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUST00000043814.5	chr10	-	3282	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41179256	41064167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
ENSMUST00000043867.11	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000043867.11	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	2038	junction_1	2670.46824857864	4435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859584	28861564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUST00000043898.8	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
ENSMUST00000043907.14	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_1	12	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114089	25115263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25114463_25114635_25114679_25114761
ENSMUST00000043914.8	chr14	+	2674	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCAGTTCTATTGCACT	NA	False	NA	17	True	AATAAA	-17	NA	65187493	65277281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUST00000043929.11	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ENSMUST00000043931.9	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	2965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
ENSMUST00000043937.9	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	1536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503093	130489560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUST00000043951.10	chr1	-	3248	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	36749089	36737194	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ENSMUST00000043962.9	chr8	+	2301	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807675	13831938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
ENSMUST00000043975.11	chr7	-	998	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4885	False	NA	-6	True	NA	NA	NA	30259071	30254865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
ENSMUST00000044005.14	chr16	+	2778	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010575	10060915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUST00000044007.3	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120347989_120348638
ENSMUST00000044011.12	chr2	+	1658	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTCATGGAGGTTGC	NA	False	NA	25	True	AATAAA	-26	NA	151384402	151403612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUST00000044051.6	chr9	+	518	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_1	0	1042	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8813	False	NA	21	True	AATAAA	-15	NA	50515209	50516620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_50515340_50516232
ENSMUST00000044068.10	chr16	+	4178	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	0	0	0	0	multi-exon	TRUE	non_canonical	1	193	junction_4	108.324454764379	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	974	False	NA	15	True	AATAAA	-26	NA	93629008	93672960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ENSMUST00000044106.6	chr8	-	1581	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	0	0	0	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	3399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315096	108307012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ENSMUST00000044148.3	chr4	-	3021	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCAGTTTATGGTTGCG	-17	True	NA	-2	True	AATAAA	-15	NA	47474333	47469832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_47472459_47473938
ENSMUST00000044200.11	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ENSMUST00000044220.11	chr9	-	1169	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979245	117893589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUST00000044252.7	chr17	-	1427	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105322	25101585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUST00000044355.11	chr7	-	736	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	0	0	0	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	772	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ENSMUST00000044369.13	chr1	+	2049	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGATGATGAGAAGT	NA	False	NA	98	True	AATAAA	-37	NA	5153302	5232752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUST00000044478.7	chr1	+	1830	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTCTGTCTCCAGAA	NA	False	NA	NA	False	AAAAAG	-12	NA	52884204	52960145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUST00000044524.16	chr15	+	1555	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	-9	True	NA	21	True	AATAAA	-21	NA	31224459	31274487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUST00000044567.4	chr3	+	1471	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTCCTCTTCCTTG	NA	False	NA	18	True	AATAAA	-22	NA	54642959	54657216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUST00000044675.5	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857963	119863075	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUST00000044681.7	chr6	+	1442	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	50	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8448	False	NA	10	True	AATAAA	-21	NA	97187649	97210276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUST00000044725.9	chr9	-	1668	3	FSM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7285	False	NA	-2	True	ATTAAA	-13	NA	108183189	108180156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_108181453_108182524_108182628_108182920
ENSMUST00000044825.5	chr2	+	1166	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTTTGAAGCAAGGTG	NA	False	NA	10	True	AATAAA	-21	NA	140012568	140045609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUST00000044923.15	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ENSMUST00000044949.11	chr11	-	2139	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	False	NA	53	True	NA	NA	NA	75081345	75068468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
ENSMUST00000044972.11	chr5	-	1447	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	0	0	0	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378898	135320557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000045029.15	chr3	+	1761	12	FSM	ENSMUSG00000039047.18	ENSMUST00000045029.15	1761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	156.497933870659	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTTGGTGTTTACAAT	3970	False	NA	107	True	NA	NA	NA	152419749	152491559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152446389_152446531_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUST00000045078.13	chr4	+	1280	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-31	True	NA	13	True	NA	NA	NA	44981394	44990734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUST00000045142.15	chr4	-	3664	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-17	True	NA	-6	True	AATAAA	-21	NA	56865188	56810934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
ENSMUST00000045376.11	chr14	+	1782	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTGTCTTGCTTG	NA	False	NA	16	True	AATAAA	-19	NA	21102641	21498637	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUST00000045388.8	chr1	-	1578	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAGTGTATAATAATA	NA	False	NA	NA	False	AATAAA	-26	NA	185849507	185819927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUST00000045454.9	chr10	-	2394	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	-7	True	AATAAA	-26	NA	77351619	77322494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUST00000045542.13	chr4	+	3033	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATATGATTTTGC	NA	False	NA	3	True	ATTAAA	-16	NA	116578144	116661439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
ENSMUST00000045602.9	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	1409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943452	24941033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
ENSMUST00000045604.4	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	False	NA	-3	True	ATTAAA	-21	NA	24865110	24864128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_24864694_24864899
ENSMUST00000045633.6	chr11	+	4358	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUST00000045693.8	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACAATGCCTTGTGGGG	NA	False	NA	28	True	AATAAA	-22	NA	85408970	85423417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ENSMUST00000045694.14	chr1	+	1513	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_163822641_163823482
ENSMUST00000045697.12	chr11	+	940	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACAGCTTCAGACCTCT	NA	False	NA	1	True	NA	NA	NA	59093317	59096960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUST00000045748.7	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
ENSMUST00000045756.14	chr3	+	685	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	0	0	0	0	multi-exon	TRUE	canonical	3	427	junction_2	41.5	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACGTAGAGTGTTTC	NA	False	NA	20	True	AATAAA	-24	NA	93462386	93471950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_93462519_93468250_93468403_93471549
ENSMUST00000045766.8	chr15	-	2126	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGATTTTGTCCTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	8128675	7902542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
ENSMUST00000045791.11	chr9	+	2340	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_4	15.3927742788621	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	13	True	AATAAA	-15	NA	57468225	57496078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUST00000045807.14	chr11	+	3389	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	674	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74788903	74800168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ENSMUST00000045855.9	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	False	NA	-29	True	AATACA	-20	NA	135145213	135114519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
ENSMUST00000045876.8	chr1	-	3179	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	0	0	0	0	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCTTACCAGCTTGAA	NA	False	NA	NA	False	AATAGA	-29	NA	163822365	163781322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ENSMUST00000045884.17	chr8	-	2078	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAAGATGACAATGTGC	436	False	NA	-5	True	AATAAA	-37	NA	122556308	122523051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
ENSMUST00000045887.9	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	1307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1253	False	NA	7	True	AATAAA	-27	NA	71180784	71166309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUST00000045897.15	chr1	+	1216	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	13086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUST00000045905.15	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUST00000045918.15	chr16	-	1451	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTGCTCGTGCCT	NA	False	NA	13	True	AATAAA	-36	NA	20429518	20424200	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
ENSMUST00000045986.8	chr6	-	1230	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	5	678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7982	False	NA	NA	False	AATACA	-21	NA	85114748	85110659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85111271_85113804_85114096_85114420
ENSMUST00000045993.15	chr5	+	1755	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGTTCTATTCCTTTT	5273	False	NA	43	True	AATAAA	-45	NA	100666174	100695669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUST00000046011.12	chr12	+	3021	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398458	17480096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
ENSMUST00000046030.8	chr2	-	3396	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6977	False	NA	-12	True	AATAAA	-16	NA	140012484	139961802	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
ENSMUST00000046094.6	chr19	+	1473	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	0	0	0	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	3013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3277	False	NA	31	True	AATAAA	-20	NA	4242063	4245419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUST00000046114.5	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81100832_81101484_81101642_81102606
ENSMUST00000046149.9	chr2	+	1057	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_1	21	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130405911_130406000_130406352_130406857
ENSMUST00000046191.9	chr14	-	2788	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATCCATCAGGTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	45626418	45613790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUST00000046244.15	chr17	+	1519	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCACTCTGGTTTGC	2976	False	NA	77	True	NA	NA	NA	35055994	35058209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUST00000046246.13	chr13	-	1697	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGCCTCCCCGC	NA	False	NA	-7	True	AATAAA	-15	NA	55661259	55646228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUST00000046255.14	chr6	-	1610	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874821	134846070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
ENSMUST00000046288.16	chr17	+	1582	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739091	31750305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
ENSMUST00000046389.5	chr2	+	1898	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200327	76214112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
ENSMUST00000046404.8	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ENSMUST00000046485.5	chr12	-	2068	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849701	99683790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUST00000046497.8	chr17	+	1190	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	14	True	NA	NA	NA	46807636	46810550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUST00000046514.13	chr1	+	4906	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095240	185160557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
ENSMUST00000046532.4	chr4	-	1880	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	0	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224637	127219027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_127220565_127224294
ENSMUST00000046558.8	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111121	107137125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUST00000046587.8	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ENSMUST00000046638.10	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-22	NA	105677239	105599049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUST00000046644.7	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	1646	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUST00000046651.7	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000046735.11	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7880	False	NA	-6	True	AATAAA	-22	NA	106563114	106535950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
ENSMUST00000046748.13	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
ENSMUST00000046831.11	chr9	-	785	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	45.9879211194514	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCCATGGTCATTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	21838758	21832304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
ENSMUST00000046863.12	chr7	+	1828	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_6	10.2794292967395	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUST00000046908.10	chr2	-	1620	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTGTGTGTTGTTTCTT	NA	False	NA	-4	True	NA	NA	NA	163261448	163247741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
ENSMUST00000046951.10	chr13	+	1722	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154498	41166491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ENSMUST00000046955.7	chr11	+	2002	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2471	False	NA	8	True	AATAAA	-10	NA	17161917	17183796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
ENSMUST00000046974.5	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	50571899	50587805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
ENSMUST00000047028.9	chr11	-	3362	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGGGTTATTACAT	NA	False	NA	-3	True	AATAAA	-17	NA	20781056	20773575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUST00000047057.9	chr19	+	1353	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGTAGCATGTTTCC	3692	False	NA	NA	False	ATTAAA	-19	NA	45549053	45566726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUST00000047086.10	chr17	+	3450	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	18	True	AATAAA	-18	NA	71923209	71966026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUST00000047091.14	chr7	-	2581	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACCTTGGCTAGATTC	NA	False	NA	1	True	AATAAA	-34	NA	112968546	112914832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
ENSMUST00000047177.4	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_148514756_148517201
ENSMUST00000047218.5	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUST00000047281.10	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	163	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753451	85756915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85753864_85756167_85756246_85756503
ENSMUST00000047322.8	chr18	+	3209	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3291	False	NA	9	True	ATTAAA	-31	NA	11790485	11875935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ENSMUST00000047349.8	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUST00000047356.11	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	9686	False	NA	0	True	AATAAA	-19	NA	44466082	44461679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44462945_44464412_44464707_44465825
ENSMUST00000047363.14	chr13	+	4396	34	FSM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	328.385946197822	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835605	49887743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865312_49868288_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ENSMUST00000047368.8	chr3	-	875	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUST00000047404.7	chr9	+	2601	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2126	False	NA	3	True	AATAAA	-16	NA	114517857	114553370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
ENSMUST00000047419.8	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447792	83458404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
ENSMUST00000047429.9	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6285	False	NA	5	True	AATAAA	-17	NA	91855157	91909115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_91855369_91896481_91896622_91908620
ENSMUST00000047436.11	chr17	-	1504	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	0	0	0	multi-exon	TRUE	canonical	3	423	junction_10	38.5186643070603	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUST00000047577.7	chr1	-	2564	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13197387	13183680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
ENSMUST00000047611.4	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	908	False	NA	11	True	AATAAA	-23	NA	24851655	24857811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000047616.10	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUST00000047627.14	chr13	-	3694	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626645	111562213	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUST00000047629.7	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	885	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ENSMUST00000047652.6	chr14	-	2475	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	0	0	0	0	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTGATAAATTGAGC	NA	False	NA	49	True	ATTAAA	-18	NA	40688764	40628401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
ENSMUST00000047655.7	chrX	+	1111	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGACTAGAACTAC	NA	False	NA	NA	False	AAAACA	-13	NA	36007311	36040855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
ENSMUST00000047672.9	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	2893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUST00000047689.11	chr11	-	2961	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	109.5	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758959	11750287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_11753064_11756095_11756216_11758894
ENSMUST00000047721.10	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	1565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUST00000047737.10	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.56637297521078	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUST00000047749.7	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159462	86135387	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUST00000047760.10	chr6	+	1213	3	FSM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785623	124787582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124785743_124786189_124786933_124787231
ENSMUST00000047857.16	chr5	-	2858	11	FSM	ENSMUSG00000039753.17	ENSMUST00000047857.16	2858	11	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_3	32.2155242080584	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8828	False	NA	-1	True	AATAAA	-28	NA	43939492	43901957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ENSMUST00000047864.11	chr10	+	3089	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	0	0	0	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	7259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2181	False	NA	32	True	AATAAA	-20	NA	81012464	81018332	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUST00000047885.14	chr10	-	2743	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_7	12.7305190664984	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294548	34179604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUST00000047899.13	chr14	+	1623	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122298	52129325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUST00000048054.14	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUST00000048073.9	chr11	+	2501	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ENSMUST00000048138.8	chr3	+	715	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	161.897772958398	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
ENSMUST00000048139.12	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470150	69452584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUST00000048162.10	chr4	+	2823	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355373	129382291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUST00000048192.9	chr18	-	1003	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTGTTATCTGTTGCT	NA	False	NA	-1	True	AATACA	-19	NA	77855480	77845267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUST00000048209.16	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	5796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495262	46505051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000048249.8	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	1553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
ENSMUST00000048260.15	chr18	-	3581	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGTCTGTATCCTGCTG	NA	False	NA	-3	True	AATAAA	-34	NA	66135710	66113808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUST00000048274.11	chr4	-	1804	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242476	83158046	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUST00000048363.10	chr5	-	1333	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371860	90362582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
ENSMUST00000048393.8	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	855	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8030	False	NA	31	True	AATAAA	-23	NA	101182152	101188826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_101182427_101184813_101185132_101188148
ENSMUST00000048402.12	chr12	+	2052	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594415	98636074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUST00000048578.3	chr11	-	1438	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638809	43620835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUST00000048642.15	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	2370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUST00000048670.10	chr9	+	2558	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53678821	53725438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUST00000048687.11	chrX	+	1019	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	1909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145827	135147888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUST00000048698.14	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
ENSMUST00000048706.10	chr4	-	2300	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614944	34570795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUST00000048788.14	chr16	+	2866	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAATGCCATCACCTGA	NA	False	NA	NA	False	NA	NA	NA	44544663	44557647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUST00000048792.5	chr2	-	680	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTCTTCTTTGTGCCCA	NA	False	NA	3	True	ATTAAA	-21	NA	32271950	32269112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32269546_32271703
ENSMUST00000048807.12	chr11	+	3003	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70911016_70915375_70915538_70915935
ENSMUST00000048898.17	chr8	-	2488	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_13	15.5985130530912	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTAATCATTTTAT	NA	False	NA	38	True	AATAAA	-23	NA	41087819	41004141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
ENSMUST00000048914.8	chr8	+	607	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_1	0	608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71917712_71917893
ENSMUST00000048937.6	chr9	+	2180	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	926	False	NA	5	True	AATAAA	-14	NA	75348817	75373714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
ENSMUST00000048993.12	chr13	-	3054	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATTTGCAGTGAACA	NA	False	NA	-6	True	AATAAA	-18	NA	81859132	81821961	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
ENSMUST00000049022.15	chr13	+	1187	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340960	49349720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
ENSMUST00000049091.9	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUST00000049130.8	chrX	-	903	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_2	34	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4156	False	NA	0	True	AATAAA	-18	NA	134968985	134967312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_134967957_134968348_134968422_134968799
ENSMUST00000049152.15	chr6	+	2480	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51500880	51567659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ENSMUST00000049166.5	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUST00000049245.10	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79233493_79235427
ENSMUST00000049257.8	chr11	+	3194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832887	83853914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUST00000049323.9	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
ENSMUST00000049343.15	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	44198271	44182169	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ENSMUST00000049353.9	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUST00000049369.16	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	False	NA	-10	True	AATAAA	-27	NA	47525558	47489471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUST00000049385.14	chr11	+	1322	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	0	0	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	6083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	3957	False	NA	21	True	AATAAA	-17	NA	100210710	100212922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUST00000049388.9	chr18	+	1610	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	0	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091882	47221062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ENSMUST00000049411.12	chr14	+	1239	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	179	False	NA	14	True	AATAAA	-15	NA	51162424	51164596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUST00000049424.11	chr19	+	1204	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	656	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	975	False	NA	28	True	AATAAA	-21	NA	8713202	8717988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ENSMUST00000049460.12	chr11	+	2331	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4138	False	NA	15	True	AATAAA	-17	NA	102321147	102327633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUST00000049469.13	chr5	+	3272	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	10	True	AATAAA	-20	NA	76677204	76718134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ENSMUST00000049470.11	chr1	-	3149	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289717	134273834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUST00000049527.7	chr11	+	3359	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	0	0	0	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541746	109560482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUST00000049530.14	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2223	False	NA	-8	True	AATAAA	-16	NA	83135975	83110922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83112796_83114714_83114859_83135900
ENSMUST00000049628.16	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	1228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
ENSMUST00000049642.6	chr17	-	1473	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTCTTTTCCCAGG	NA	False	NA	3	True	AATAAA	-24	NA	25069338	25067865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25067900_25069300
ENSMUST00000049644.9	chr6	+	833	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	680	False	NA	24	True	AATAAA	-14	NA	122603368	122607231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUST00000049821.4	chr4	-	750	5	FSM	ENSMUSG00000045699.5	ENSMUST00000049821.4	750	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	126.107840755442	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
ENSMUST00000049822.10	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217395	94239847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUST00000049896.13	chrX	+	3579	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563369	7576501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ENSMUST00000049911.16	chr17	-	1138	7	FSM	ENSMUSG00000015120.16	ENSMUST00000049911.16	1138	7	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_6	1792.78505404301	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	3820	False	NA	NA	False	AATAAA	-14	NA	25493284	25480889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493146
ENSMUST00000049937.13	chr3	-	2012	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_3	230.9202459725	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416805	90406271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ENSMUST00000050004.3	chr18	+	1348	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGGTGTGGTGGCG	5341	False	NA	NA	False	NA	NA	NA	21077681	21116919	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUST00000050205.12	chr5	+	954	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317663	140323892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000050207.10	chr11	-	1309	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
ENSMUST00000050214.9	chr17	-	2102	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	0	0	0	0	multi-exon	TRUE	canonical	3	272	junction_6	38.0609912279546	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569581	32540397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUST00000050273.9	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_2	455	2248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	False	NA	28	True	ATTAAA	-30	NA	38167352	38173125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_38167570_38169602_38169692_38172987
ENSMUST00000050328.15	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUST00000050410.11	chr2	-	775	5	FSM	ENSMUSG00000044627.12	ENSMUST00000050410.11	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	2656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178087	32168827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUST00000050476.11	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ENSMUST00000050516.14	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUST00000050551.10	chrX	-	901	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	38	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295787	101290986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101295639
ENSMUST00000050552.15	chr1	+	3876	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTGTCTGTGCTTT	657	False	NA	13	True	NA	NA	NA	58432056	58446512	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUST00000050584.10	chr18	+	831	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	90	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481749	36536033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36481870_36499567_36499795_36535549
ENSMUST00000050630.14	chr17	+	1508	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
ENSMUST00000050705.4	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
ENSMUST00000050813.4	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963891	84955296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_84956679_84962231_84962351_84963825
ENSMUST00000050827.14	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4346	False	NA	NA	False	AATAAA	-15	NA	123887452	123866488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUST00000050880.8	chr11	+	2695	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATGTGTGTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	119246382	119271905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ENSMUST00000050881.10	chr16	+	1329	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	105	False	NA	9	True	AATAAA	-15	NA	4756985	4758880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757578_4758059
ENSMUST00000051043.4	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_101747741_101747885_101748198_101750909
ENSMUST00000051064.9	chr3	+	3292	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTCTTGG	NA	False	NA	10	True	NA	NA	NA	7568542	7618896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ENSMUST00000051094.9	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	715	junction_5	234.329170185873	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUST00000051256.10	chrX	+	2253	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618718	133622666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
ENSMUST00000051356.12	chr7	+	2923	14	FSM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_1	140.806720522774	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27305282	27338878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27305363_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUST00000051477.13	chr4	-	2108	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	0	0	0	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	2392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	NA	False	NA	-1	True	ATTAAA	-24	NA	137085031	137047006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUST00000051589.9	chr9	-	2843	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	1	True	NA	NA	False	AATAAA	-45	NA	4309467	4294792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUST00000051594.12	chr13	+	2563	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTTTTTCTTCTT	2847	False	NA	39	True	NA	NA	NA	108452865	108526119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
ENSMUST00000051671.11	chr6	-	1511	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	0	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	-5	True	AATAAA	-16	NA	39397292	39377693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUST00000051672.9	chr8	-	792	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
ENSMUST00000051772.10	chr19	-	1800	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4140	False	NA	-3	True	AATAAA	-21	NA	42074796	42063380	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
ENSMUST00000051784.10	chr13	+	2421	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730366	68740457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUST00000051822.13	chr9	-	1187	11	FSM	ENSMUSG00000061559.16	ENSMUST00000051822.13	1187	11	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_10	209.060852385137	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5423	False	NA	-3	True	AATAAA	-19	NA	54641801	54624442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
ENSMUST00000052120.14	chr3	-	3432	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
ENSMUST00000052126.6	chr14	-	408	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	1631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34077390	34073837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_34074035_34075654_34075718_34077242
ENSMUST00000052209.9	chr8	+	2883	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3746	False	NA	82	True	ATTAAA	-22	NA	105897305	105944621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
ENSMUST00000052248.8	chr19	+	1864	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	0	0	0	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	22507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	843	False	NA	NA	False	AAGAAA	-37	NA	8944404	8955843	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUST00000052249.7	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUST00000052283.7	chrX	-	1854	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715041	78666836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
ENSMUST00000052355.15	chr10	+	1267	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	87982853	88014252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUST00000052374.13	chr15	-	3033	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614204	81588453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ENSMUST00000052499.9	chr15	-	838	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148516	80144815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ENSMUST00000052566.8	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
ENSMUST00000052590.8	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3222	False	NA	-41	True	AATAAA	-14	NA	121590559	121582818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_121583636_121590253
ENSMUST00000052645.13	chr3	-	1155	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37473745	37459058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ENSMUST00000052708.7	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ENSMUST00000052727.5	chr6	+	1219	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	6.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785868	124787582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124785994_124786189_124786933_124787231
ENSMUST00000052761.9	chrX	-	1331	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_10	445.162891535222	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
ENSMUST00000052798.14	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	1592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUST00000052832.6	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	False	NA	-32	True	TTTAAA	-27	NA	56916771	56914451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUST00000052919.8	chr11	-	2184	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1323	False	NA	1	True	AATAAA	-23	NA	98478194	98472081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ENSMUST00000052999.13	chr4	+	1307	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	0	0	0	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022633	108036505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUST00000053150.8	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7974	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114811400_114811800
ENSMUST00000053266.11	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
ENSMUST00000053540.11	chrX	+	930	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	3214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171009	135172727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135171151_135171558_135171632_135172011
ENSMUST00000053558.10	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
ENSMUST00000053583.7	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21867301_21867972
ENSMUST00000053664.9	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUST00000053705.8	chr19	+	2032	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	202	False	NA	9	True	AATAAA	-16	NA	5088853	5091159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5090061_5090334
ENSMUST00000053718.15	chr7	-	2134	9	FSM	ENSMUSG00000039194.17	ENSMUST00000053718.15	2134	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	6.47591692349431	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCTTTCATGATGAACT	NA	False	NA	-16	True	AATAAA	-21	NA	79036707	79024618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033793_79034406_79034528_79036436
ENSMUST00000053729.14	chr2	+	1642	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUST00000053811.10	chr12	+	2764	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157606	85180862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ENSMUST00000053872.12	chr3	+	2805	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTTTCAGAGTAATC	1874	False	NA	21	True	AATAAA	-11	NA	95136042	95143720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUST00000053918.9	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
ENSMUST00000053981.6	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUST00000054080.15	chr6	-	2697	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTCTGGTAAGAATTT	NA	False	NA	NA	False	AATAAA	-24	NA	148847965	148822532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
ENSMUST00000054125.9	chr10	+	2130	11	FSM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	12.3385574521497	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTGTTGCGTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	128542126	128556107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUST00000054289.13	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	54980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	6237	False	NA	4	True	AATAAA	-23	NA	24939083	24940903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUST00000054343.15	chr7	+	1592	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	1400	False	NA	19	True	ATTAAA	-24	NA	44498647	44504845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUST00000054442.11	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151072	87165630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUST00000054445.9	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_29272810_29274648
ENSMUST00000054471.10	chr10	-	2564	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGAAATAAATCCATGAA	NA	False	NA	69	True	AATAAA	-25	NA	100425257	100408126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUST00000054534.4	chrX	+	1178	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	0	0	0	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	1943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234431	138238918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUST00000054536.11	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ENSMUST00000054538.13	chr4	-	1659	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9051	False	NA	-3	True	AATAAA	-18	NA	43499695	43496141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUST00000054544.7	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	9200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69229940_69230756
ENSMUST00000054594.15	chr7	+	1355	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014240	30018471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ENSMUST00000054607.16	chr2	-	2543	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	2376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	-8	True	AATAAA	-30	NA	154916417	154901229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
ENSMUST00000054636.7	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_111677847_111679477
ENSMUST00000054666.7	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
ENSMUST00000054829.13	chr5	+	904	7	FSM	ENSMUSG00000029149.15	ENSMUST00000054829.13	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	21.1344899788631	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409049	31410541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410441
ENSMUST00000054835.15	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUST00000054912.15	chr2	+	677	4	FSM	ENSMUSG00000047459.15	ENSMUST00000054912.15	677	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	797.62021037584	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTGTGTTGTGTCTTTA	NA	False	NA	14	True	AGTAAA	-16	NA	155078452	155092192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155078538_155084654_155084727_155089690_155089859_155091840
ENSMUST00000054952.4	chr11	-	1332	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	-27	True	AATAAA	-25	NA	73067863	73066344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_73067578_73067764
ENSMUST00000055213.11	chr4	+	872	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978943	125003682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ENSMUST00000055327.8	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ENSMUST00000055413.13	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18655370_18655455_18655624_18657839
ENSMUST00000055424.13	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
ENSMUST00000055559.8	chr6	+	2351	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTTATTTTTGGTTTG	NA	False	NA	15	True	AATAAA	-19	NA	49296207	49318516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUST00000055575.8	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	False	NA	30	True	CATAAA	-21	NA	125990415	125992377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_125990603_125991621
ENSMUST00000055844.10	chr9	+	1987	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUST00000055858.14	chr7	+	1982	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896145	43901743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000056078.9	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	218	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	1644	False	NA	-6	True	AATAAA	-23	NA	28441245	28439066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28439665_28440911_28440980_28441189
ENSMUST00000056228.8	chr12	-	1346	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703358	54692176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54693321_54703156
ENSMUST00000056292.8	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
ENSMUST00000056370.13	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317638	88301449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUST00000056398.11	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	1	True	NA	17	True	AATAAA	-17	NA	18848577	18854052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ENSMUST00000056458.14	chr4	-	757	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	0	0	0	0	multi-exon	TRUE	canonical	2	32	junction_8	169.629516415942	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9644	False	NA	-3	True	AATAAA	-19	NA	119177681	119157206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000056601.11	chr11	-	2833	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCATCCCTGAAGCTGG	NA	False	NA	68	True	ATTAAA	-16	NA	76070473	75937051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
ENSMUST00000056937.12	chr5	-	804	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAATTGGAAATAGATAT	NA	False	NA	3	True	AATAAA	-24	NA	110987643	110976935	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
ENSMUST00000056965.12	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
ENSMUST00000056997.15	chr14	-	2202	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAATAAAATGTTA	NA	False	NA	-32	True	NA	NA	NA	59835393	59801424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUST00000057062.12	chr1	-	3430	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078536	183057915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
ENSMUST00000057115.7	chr13	-	1942	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCCTTTTCTTGTTGG	NA	False	NA	3	True	ATTAAA	-23	NA	59917624	59903222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ENSMUST00000057151.10	chr12	+	2971	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634424	30641214	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
ENSMUST00000057177.7	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
ENSMUST00000057195.17	chr7	+	2722	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	0	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	75	False	NA	21	True	AATAAA	-21	NA	44465511	44480236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44465908_44477910
ENSMUST00000057208.13	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUST00000057257.10	chr12	+	1292	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	False	NA	NA	False	TATAAA	-27	NA	72132630	72147635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUST00000057288.7	chr12	+	2175	13	FSM	ENSMUSG00000020571.14	ENSMUST00000057288.7	2175	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	3697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316545	17334771	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUST00000057330.15	chr11	+	2290	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAGAACTCCTTAAT	919	False	NA	21	True	AATAAA	-18	NA	53458205	53491932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
ENSMUST00000057486.9	chr15	-	2509	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496966	36477813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
ENSMUST00000057495.10	chr13	+	2857	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	57.0470300398157	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATACAATAAGAG	NA	False	NA	NA	False	NA	NA	NA	84370418	84444260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUST00000057500.6	chr9	-	1232	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	10	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTTTATTTGGCGGT	3713	False	NA	0	True	ATTAAA	-35	NA	96360728	96352989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_96353906_96356010_96356059_96360460
ENSMUST00000057551.14	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUST00000057578.16	chr6	+	2283	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746126	106759435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUST00000057580.8	chr4	+	1003	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533081	148539430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
ENSMUST00000057623.14	chr10	-	3531	12	FSM	ENSMUSG00000062075.14	ENSMUST00000057623.14	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	3111	False	NA	NA	False	NA	NA	NA	80754079	80737036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUST00000057649.8	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	672	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	43400079	43400642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_43400100_43400600
ENSMUST00000057669.16	chr7	+	1800	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	5216	False	NA	31	True	TATAAA	-24	NA	126358772	126364991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000057716.6	chr19	-	784	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7390	False	NA	1	True	ATTAAA	-22	NA	6902748	6899790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
ENSMUST00000057795.12	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4323	False	NA	NA	False	AATAAA	-11	NA	123887475	123866492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ENSMUST00000057798.9	chr10	+	2106	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTTGAGGGCTTGTGG	1320	False	NA	28	True	TATAAA	-31	NA	81104005	81109080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUST00000057816.15	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4547	False	NA	1	True	AATAAA	-23	NA	181223801	181210941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUST00000057829.4	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_49514578_49520961
ENSMUST00000057885.13	chr5	-	738	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	17710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548787	65545706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUST00000057921.10	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	False	NA	31	True	AATAAA	-20	NA	103857564	103876163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
ENSMUST00000058030.10	chr4	+	2797	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5048	False	NA	NA	False	NA	NA	NA	89055358	89099318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUST00000058125.9	chrX	-	866	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	0	0	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	6675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116262	135114720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135115333_135115652_135115730_135116085
ENSMUST00000058163.11	chr11	+	3559	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616006	23682876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUST00000058230.13	chr3	+	1130	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ENSMUST00000058245.5	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479418	146494363	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ENSMUST00000058265.8	chrX	-	1449	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTATTACTTTTCTGT	NA	False	NA	-2	True	ATTAAA	-18	NA	37723964	37719661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_37721001_37723854
ENSMUST00000058333.10	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUST00000058351.16	chr4	+	2371	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786610	99844491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
ENSMUST00000058370.14	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	208	False	NA	NA	False	AATAAA	-20	NA	120348940	120355184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUST00000058393.9	chr4	+	1098	4	FSM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_1	42.5519290592879	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041693	154046382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_154041780_154044205_154044320_154044987_154045450_154045946
ENSMUST00000058407.6	chr11	-	434	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	8152	junction_1	0	2535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	False	NA	-6	True	AATAAA	-19	NA	4654342	4651972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4652221_4654156
ENSMUST00000058488.9	chr9	-	1346	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	7.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89587121	89581258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_89582033_89584824_89585074_89586798
ENSMUST00000058639.11	chr12	-	1109	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629884	69624401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUST00000058714.10	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	False	NA	10	True	AATAAA	-19	NA	43455164	43460261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_43455319_43458599
ENSMUST00000058716.14	chr5	+	4134	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTCTTATCTCTGCC	NA	False	NA	33	True	AATAAA	-19	NA	139186391	139235595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUST00000058746.7	chr7	+	1619	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	710	False	NA	7	True	NA	NA	NA	141048734	141051385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000058754.9	chr4	-	3429	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955438	120916433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUST00000058884.10	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486034	13355823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
ENSMUST00000058914.10	chr15	+	1982	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98927771	98935991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUST00000058981.3	chr3	-	1112	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGTCTAATTGCATTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	67371259	67365330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
ENSMUST00000059045.8	chr15	+	1796	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	330.5	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTAATGTCTTCTTT	879	False	NA	8	True	NA	NA	NA	76211596	76214877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76211864_76213229_76213437_76213555
ENSMUST00000059057.14	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUST00000059080.7	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	11430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899169	179900238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUST00000059093.7	chr8	+	747	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGCGTGCTTCTGGCA	NA	False	NA	7	True	AATAAA	-18	NA	127149253	127152172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_127149570_127151741
ENSMUST00000059099.7	chrX	-	1041	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAAACGTGGCTTGAG	NA	False	NA	-29	True	AGTAAA	-10	NA	99669541	99666513	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ENSMUST00000059229.16	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	False	NA	-20	True	AATAAA	-18	NA	110417753	110407020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000059250.8	chr12	+	2609	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	2	True	AATAAA	-20	NA	55883108	55916521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
ENSMUST00000059297.6	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ENSMUST00000059354.15	chr4	-	1640	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ENSMUST00000059462.12	chr6	+	2654	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520780	71558563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUST00000059472.10	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000059515.8	chr13	+	2077	10	FSM	ENSMUSG00000021218.11	ENSMUST00000059515.8	2077	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	614.94494383694	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTGGTATTGAGTGTCT	NA	False	NA	35	True	AATAAA	-18	NA	3588129	3615820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_3588344_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUST00000059582.9	chr19	-	999	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	False	NA	-34	True	NA	NA	NA	10533115	10527855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUST00000059775.15	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71152268_71153166_71153394_71157866
ENSMUST00000059844.13	chr17	-	1908	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	False	NA	33	True	NA	NA	NA	47063140	47046630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ENSMUST00000059954.14	chr2	-	1809	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699631	164681437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
ENSMUST00000059980.11	chr1	+	558	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	34160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
ENSMUST00000059983.10	chr6	-	820	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	8093	False	NA	-18	True	AATAAA	-25	NA	72367686	72362205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72362637_72365244_72365404_72367456
ENSMUST00000060049.8	chr5	-	2073	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9954	False	NA	0	True	NA	NA	NA	34326871	34311223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
ENSMUST00000060067.12	chr16	+	2648	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501933	4525559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ENSMUST00000060101.10	chrX	-	1250	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	29	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073091	135070829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUST00000060108.7	chrX	-	2699	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539907	12521117	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUST00000060212.13	chr10	+	2007	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376744	13391287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
ENSMUST00000060433.10	chr7	+	1519	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622985	142624830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUST00000060447.13	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6806	False	NA	-5	True	AATAAA	-34	NA	69715959	69701541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
ENSMUST00000060455.15	chr2	+	1569	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838883	120847385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUST00000060645.13	chr2	-	1586	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1070	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9441	False	NA	NA	False	AATAAA	-22	NA	167473892	167449763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_167451168_167459748_167459898_167473859
ENSMUST00000060738.9	chr3	-	677	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	21.5	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATGTCTGTACCCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	90421699	90418340	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90418672_90419302_90419457_90421507
ENSMUST00000060834.12	chr7	+	982	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008141	30013729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ENSMUST00000060895.6	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	61.1714853284106	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUST00000060987.15	chr10	+	1071	6	FSM	ENSMUSG00000035242.16	ENSMUST00000060987.15	1071	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	2881.68367452085	4556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662489	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000060991.6	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	False	NA	0	True	AATAAA	-15	NA	126906133	126903148	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
ENSMUST00000061052.12	chr17	-	1452	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220967	36208486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000061158.5	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUST00000061242.8	chr11	-	1800	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	0	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1847	False	NA	-4	True	AATAAA	-15	NA	59119096	59102239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
ENSMUST00000061251.6	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114951267_114951840
ENSMUST00000061283.15	chr11	-	2396	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4488	False	NA	-3	True	AATAAA	-20	NA	79971817	79937318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ENSMUST00000061295.7	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_98997482_98998703_98999657_99002196
ENSMUST00000061522.8	chr18	-	1451	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTCTGCTTGGTAT	NA	False	NA	-8	True	ATTAAA	-14	NA	36899251	36896725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
ENSMUST00000061755.9	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUST00000061895.16	chr5	-	2183	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942990	32893644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUST00000061970.12	chrX	+	3379	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAGGGCTATGACTGT	NA	False	NA	16	True	AATAAA	-24	NA	70258611	70358901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUST00000061995.10	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128047261_128047577
ENSMUST00000062211.4	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUST00000062350.15	chr5	+	2252	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115164	138132475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUST00000062542.5	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57956820	57965664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_57956922_57964193
ENSMUST00000062601.14	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	14970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	False	NA	-11	True	AATAAA	-20	NA	130523986	130520479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ENSMUST00000062613.12	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUST00000062626.4	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_59186167_59186323
ENSMUST00000062672.7	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_3330911_3333563
ENSMUST00000062678.11	chr10	-	1984	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	1137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	-19	True	AATAAA	-19	NA	78248877	78236219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
ENSMUST00000062802.5	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	3	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	-15	True	NA	22	True	ATTAAA	-22	NA	32800252	32801383	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUST00000062904.11	chr4	+	3151	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGGCTATGTGGCTT	9070	False	NA	NA	False	NA	NA	NA	152018147	152066594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUST00000063042.11	chr9	+	2396	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230143	114303445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUST00000063117.10	chr12	+	1656	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194491	87211497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUST00000063199.13	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUST00000063249.9	chr7	+	2155	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246574	24272863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ENSMUST00000063262.11	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
ENSMUST00000063417.11	chr17	-	2288	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	2183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000063507.11	chrX	-	4227	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59224449	59101315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
ENSMUST00000063520.15	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUST00000063574.7	chr17	+	1192	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUST00000063661.13	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUST00000063683.8	chr17	-	2312	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228555	7222409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
ENSMUST00000063814.15	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	0	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472056	38460610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000063817.7	chr17	+	753	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223945	79227735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUST00000063879.13	chr10	-	1654	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369630	79362263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
ENSMUST00000064104.13	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ENSMUST00000064141.12	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	False	NA	12	True	AATAAA	-21	NA	70886124	70929486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
ENSMUST00000064162.11	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	25.043711785596	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUST00000064200.9	chr15	+	1623	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7681	False	NA	11	True	AATAAA	-17	NA	97862110	97868156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUST00000064234.7	chr17	-	3164	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAGCGTTTATTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	7050183	7005439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUST00000064244.11	chr2	-	2281	8	FSM	ENSMUSG00000052406.15	ENSMUST00000064244.11	2281	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854398	26843574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
ENSMUST00000064272.10	chr1	+	1998	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUST00000064314.10	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ENSMUST00000064393.6	chr19	+	1803	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	0	0	0	0	multi-exon	TRUE	canonical	3	369	junction_1	16.9958634673264	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGCACTGTAGTGTAAA	NA	False	NA	27	True	CATAAA	-19	NA	29078774	29121243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
ENSMUST00000064495.8	chr8	+	2580	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717245	85729978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
ENSMUST00000064503.13	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUST00000064536.13	chr12	-	4443	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423633	21373517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
ENSMUST00000064635.12	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUST00000064798.16	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739088	31750305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_31739236_31740542_31740667_31750083
ENSMUST00000064807.9	chr4	+	1378	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGACTTTATCTTTT	2	True	NA	65	True	GATAAA	-14	NA	48540078	48561577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_48540272_48552379_48552831_48560843
ENSMUST00000064848.7	chr10	-	3114	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	-4	True	AATAAA	-29	NA	117628610	117586525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ENSMUST00000064889.13	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUST00000064900.16	chr3	+	2931	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGTGTTTATTACTG	3287	False	NA	113	True	AAAAAG	-4	NA	96604398	96613386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUST00000064922.7	chr8	-	1809	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705347	85703538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85703500_85705300
ENSMUST00000064941.7	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
ENSMUST00000064950.11	chr1	+	1618	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1455	False	NA	18	True	NA	NA	NA	171156975	171169250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUST00000065074.14	chr3	+	3224	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGACTGCTTCCTCC	NA	False	NA	15	True	AATAAA	-15	NA	66893004	67265728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUST00000065163.15	chr7	-	1047	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGTAGCAGCAGGACT	2051	False	NA	0	True	AATAAA	-27	NA	79882561	79876894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUST00000065210.10	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	117	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584323	128602428	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128584436_128601015_128601110_128601478
ENSMUST00000065286.2	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUST00000065358.9	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6277	False	NA	-4	True	AATAAA	-15	NA	57065615	57062322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUST00000065373.6	chr1	+	1710	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	10.5	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGTTTTGTTTGCCTC	NA	False	NA	22	True	ATTAAA	-12	NA	16735433	16748499	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUST00000065422.12	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	TRUE	canonical	3	138	junction_1	12.1951720866178	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745600	107809704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUST00000065527.11	chr10	+	1274	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTATGTGCTCCAGAAG	NA	False	NA	2	True	AATAAA	-12	NA	22049419	22059813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUST00000065534.10	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUST00000065625.12	chr1	+	2749	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304292	151333912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUST00000065630.8	chr9	-	3128	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53159353	53009934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
ENSMUST00000065678.6	chr4	+	564	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	0	0	0	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	1363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTGTGCTTTATT	-22	True	NA	NA	False	AATAAA	-25	NA	47474657	47483242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
ENSMUST00000065793.12	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	2171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ENSMUST00000065865.10	chr14	+	937	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	118.776758531907	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTGCTCATTCAAAAC	NA	False	NA	22	True	AATAAA	-16	NA	8508485	8520751	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUST00000065896.9	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
ENSMUST00000065917.16	chr10	+	1486	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	0	0	0	multi-exon	TRUE	canonical	3	684	junction_15	463.449884621364	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUST00000065941.12	chr1	-	2219	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115564	171109518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ENSMUST00000066027.14	chr16	+	1050	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGATCCTTTCCTAGTG	NA	False	NA	25	True	AATAAA	-31	NA	17884306	17889222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
ENSMUST00000066052.12	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ENSMUST00000066070.7	chr7	-	774	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	1470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	-4	True	AATAAA	-17	NA	28681239	28670796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
ENSMUST00000066160.3	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9199	False	NA	31	True	AAAACA	-7	NA	110987865	111022011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUST00000066208.13	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUST00000066237.10	chr11	-	1922	15	FSM	ENSMUSG00000020182.17	ENSMUST00000066237.10	1922	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_14	28.9743905220187	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	5550	False	NA	-1	True	AATAAA	-21	NA	11848044	11764100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11848007
ENSMUST00000066264.13	chr7	+	1267	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	0	0	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524641	28531672	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ENSMUST00000066379.11	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	False	NA	-10	True	AATAAA	-25	NA	33037195	32769151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUST00000066469.14	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	452	False	NA	26	True	AATAAA	-15	NA	70755167	70765640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUST00000066640.5	chr2	-	1394	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTAGAGTGATCTTGT	NA	False	NA	-1	True	ATTAAA	-38	NA	150881318	150871604	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_150872837_150881156
ENSMUST00000066650.12	chr9	+	2261	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	6406	False	NA	49	True	TATAAA	-1	NA	99457851	99466554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUST00000066715.11	chr4	-	2218	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8679	False	NA	-1	True	AATAAA	-18	NA	152112118	152104230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUST00000066760.8	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8292	False	NA	-11	True	AATAAA	-11	NA	69572910	69563946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
ENSMUST00000066921.10	chr5	+	2784	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATTTGTGATTTGTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	8472849	8504797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUST00000066983.13	chr16	-	2848	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563318	45550087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUST00000066984.14	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUST00000067033.8	chr15	-	2471	9	FSM	ENSMUSG00000022329.16	ENSMUST00000067033.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.4851500278157	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGTATTAGAAAAAGAC	NA	False	NA	NA	False	ACTAAA	-33	NA	35155896	34875818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35155672
ENSMUST00000067081.10	chr4	+	2595	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	0	0	0	0	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3962	False	NA	23	True	ATTAAA	-28	NA	155709325	155734395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUST00000067137.14	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUST00000067167.6	chr19	-	1402	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	36.3583414649629	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUST00000067215.9	chr15	-	2619	16	FSM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_9	11.3927852413515	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTTGCCTGTGTTGTCA	3525	False	NA	-26	True	AATATA	-16	NA	83234448	83183939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ENSMUST00000067240.11	chr4	-	2185	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_9	59.1335510476424	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129452184	129442141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
ENSMUST00000067298.5	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95770245_95777805_95777928_95778764
ENSMUST00000067386.14	chr7	+	2701	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	396	False	NA	NA	False	AATAAA	-20	NA	27252657	27281524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
ENSMUST00000067398.13	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ENSMUST00000067404.13	chr6	+	2766	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ENSMUST00000067476.9	chr8	-	3466	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
ENSMUST00000067496.7	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	2340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132258135_132260606_132260699_132260792
ENSMUST00000067549.15	chr14	-	2933	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4694	False	NA	-7	True	AATAAA	-20	NA	52258190	52243538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
ENSMUST00000067563.9	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ENSMUST00000067567.5	chr4	-	1626	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7476149243608	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699937	135695534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUST00000067663.14	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	1555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884353	90889777	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUST00000067664.10	chr11	+	2100	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	0	0	0	0	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	2033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTAACTATGGATCATTT	2991	False	NA	26	True	ATTAAA	-22	NA	75623694	75656671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
ENSMUST00000067763.10	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUST00000067801.14	chr17	-	2533	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1872	False	NA	1	True	NA	NA	NA	31856212	31831596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUST00000067857.11	chr10	+	1442	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551089	61575039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ENSMUST00000067902.13	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133390103_133397048_133397172_133399629
ENSMUST00000067936.6	chr11	-	2150	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	1845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	-15	True	AATAAA	-17	NA	120472206	120468934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
ENSMUST00000067940.3	chrX	-	1224	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	2064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759798	52744867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ENSMUST00000067990.8	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284439	63286059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_63284500_63284892_63285068_63285676
ENSMUST00000068056.12	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	2979	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	False	NA	37	True	AATGAA	-26	NA	35460721	35472683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUST00000068326.14	chr5	+	2898	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUST00000068333.14	chr1	-	1951	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465534	78401704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ENSMUST00000068407.6	chr15	+	1037	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_1	0	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784109	76785505	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76784193_76784551
ENSMUST00000068408.14	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	2550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
ENSMUST00000068532.10	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	537	False	NA	14	True	AATAAA	-24	NA	47069581	47091650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUST00000068586.13	chr2	-	2445	15	FSM	ENSMUSG00000040434.17	ENSMUST00000068586.13	2445	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	34.8762389144289	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201402	92195390	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ENSMUST00000068641.8	chr7	+	1329	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	84	True	AATAAA	-16	NA	27173192	27176789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27173297_27175564
ENSMUST00000068686.13	chr11	-	1621	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGTGAGTACACTATC	4211	False	NA	-2	True	NA	NA	NA	96002790	95990151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
ENSMUST00000068705.13	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUST00000068795.4	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_36953289_36953546
ENSMUST00000068798.13	chr3	+	1500	6	FSM	ENSMUSG00000027942.18	ENSMUST00000068798.13	1500	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	198.067261302821	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATCATTTCTTTAGA	NA	False	NA	7	True	AATAAA	-17	NA	89960177	89969749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89965791_89965959_89966048_89966108_89968944
ENSMUST00000068805.14	chr1	+	2009	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUST00000068825.8	chr5	+	3269	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	0	0	0	0	multi-exon	TRUE	canonical	3	384	junction_1	91.6660977100463	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCTGACGCAGTGA	NA	False	NA	11	True	AATAAA	-20	NA	24890821	24915376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUST00000068856.5	chr9	+	1391	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTGTGGTTATTCGG	NA	False	NA	8	True	AATATA	-19	NA	56858161	56890490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUST00000068916.16	chr8	+	1483	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210063	26214914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUST00000068996.13	chr7	-	1126	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012491	136977302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ENSMUST00000069004.14	chr10	+	3024	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	0	0	0	0	multi-exon	TRUE	canonical	3	170	junction_2	11.5134703716994	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109714	52197472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUST00000069064.7	chr16	+	1297	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964842	16966710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
ENSMUST00000069077.10	chrX	+	1200	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000069103.11	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000069209.2	chrX	+	1427	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTTACCTGTAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	52726792	52740408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
ENSMUST00000069250.14	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUST00000069304.14	chr11	+	2225	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	115.462537790991	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268545	50277354	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUST00000069324.7	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_5054714_5055803
ENSMUST00000069330.14	chr9	-	1356	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8912	False	NA	-19	True	AATAAA	-21	NA	22043111	22038022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
ENSMUST00000069360.14	chrX	-	2216	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702798	51361302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
ENSMUST00000069423.13	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
ENSMUST00000069486.13	chr17	+	1134	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	34	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTCTATTCTTAA	NA	False	NA	39	True	ATTAAA	-30	NA	80531869	80535926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_80532100_80533049_80533194_80535166
ENSMUST00000069530.13	chr15	+	2114	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	0	0	0	0	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	29	True	AATAAA	-15	NA	81900569	81924286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUST00000069579.7	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	3802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048110	24043711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
ENSMUST00000069580.12	chr6	-	1434	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8408	False	NA	NA	False	TATAAA	-15	NA	72339415	72336696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUST00000069695.9	chr6	+	1546	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ENSMUST00000069718.15	chr8	+	3564	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040152	92395067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
ENSMUST00000069722.13	chrX	+	1851	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	76.3282385490455	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	10	True	AATAAA	-23	NA	73326302	73333757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUST00000069731.12	chrX	+	799	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	1697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805444	67848173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
ENSMUST00000069803.5	chrX	-	450	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	19	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135856232_135857483_135857589_135858647
ENSMUST00000069968.13	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUST00000070039.14	chr17	-	1939	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725560	78685313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ENSMUST00000070112.6	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	951	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	-1	True	ATTAAA	-15	NA	35939418	35926337	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
ENSMUST00000070215.8	chr19	-	888	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4887	False	NA	0	True	AATAAA	-27	NA	45738030	45736172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUST00000070257.14	chr11	+	2650	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4587746	4633385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
ENSMUST00000070326.14	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ENSMUST00000070515.2	chr14	-	2035	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTTTCTTGTGTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	66361949	66321825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
ENSMUST00000070532.8	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	3677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202387	130209256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUST00000070575.14	chr11	-	3500	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	1014	False	NA	-11	True	AATAAA	-22	NA	120881918	120852574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUST00000070755.13	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ENSMUST00000070785.16	chr13	-	2561	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
ENSMUST00000070872.13	chr11	-	2354	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	2874	False	NA	NA	False	NA	NA	NA	109364120	109343551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
ENSMUST00000070878.9	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUST00000070996.11	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	8773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
ENSMUST00000071006.9	chr17	+	758	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	1732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059060	28070939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUST00000071044.13	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUST00000071118.7	chr13	-	1030	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1070	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235745	97234715	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_97234700_97235700
ENSMUST00000071134.4	chr8	+	1868	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTGGAGATTTCT	NA	False	NA	27	True	AATAAA	-27	NA	124138162	124148754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUST00000071207.14	chr7	+	1698	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545502	44550048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUST00000071215.5	chr14	+	616	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753073	20754493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_20753266_20753357_20753477_20754188
ENSMUST00000071320.6	chr13	-	894	4	FSM	ENSMUSG00000074830.5	ENSMUST00000071320.6	894	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	65.3469373591618	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGTAATCAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	66846307	66818834	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66819455_66821007_66821069_66821267_66821395_66846221
ENSMUST00000071442.12	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	3126	False	NA	12	True	ATTAAA	-20	NA	25293082	25299506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ENSMUST00000071457.12	chr7	-	702	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
ENSMUST00000071492.9	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8617	False	NA	32	True	AATAAA	-16	NA	86342627	86347040	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUST00000071539.10	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUST00000071544.11	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335967	83360323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ENSMUST00000071555.13	chr11	-	1952	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	0	0	0	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	7706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239368	120236515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUST00000071664.12	chr3	-	1276	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	2421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949863	94940007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000071667.9	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
ENSMUST00000071698.13	chr19	-	3228	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058214	44023382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ENSMUST00000071745.4	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_148256200_148257100
ENSMUST00000071792.7	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832705	76834929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000071841.7	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ENSMUST00000071848.7	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
ENSMUST00000071881.10	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317614	140323892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ENSMUST00000071921.13	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUST00000071986.13	chr7	-	566	4	FSM	ENSMUSG00000089661.10	ENSMUST00000071986.13	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTCTTTGGTTTTTG	NA	False	NA	0	True	AATACA	-18	NA	26880574	26879166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
ENSMUST00000071991.6	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	89826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUST00000072040.7	chr12	+	1509	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976486	106041479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUST00000072119.15	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	2685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	76	True	AATAAA	-19	NA	100923078	100915157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUST00000072154.9	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ENSMUST00000072232.9	chr9	-	3667	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCTGTATGCCACATTA	NA	False	NA	71	True	AATAAA	-30	NA	75466939	75404988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUST00000072235.10	chr1	-	646	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUST00000072298.13	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5914	False	NA	0	True	AATAAA	-22	NA	156833976	156769264	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ENSMUST00000072362.14	chr9	+	3502	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	0	0	0	0	multi-exon	FALSE	canonical	2	327	junction_20	112.703715555433	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5879	False	NA	20	True	AATAAA	-30	NA	21336240	21418436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ENSMUST00000072376.13	chr18	+	3040	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	926	False	NA	23	True	AATAAA	-28	NA	38429687	38450902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUST00000072503.13	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	15237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	5922	False	NA	16	True	AATAAA	-23	NA	45367494	45370259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000072554.13	chr4	+	2528	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8255	False	NA	22	True	NA	NA	NA	156194438	156211722	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUST00000072566.5	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	2862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
ENSMUST00000072576.10	chr18	+	876	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
ENSMUST00000072581.9	chr11	+	1311	11	FSM	ENSMUSG00000023170.15	ENSMUST00000072581.9	1311	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.623816106265	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTACCCACCATCATG	3929	False	NA	-3	True	AATAAA	-7	NA	69804713	69807402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69804901_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000072621.12	chr11	-	3324	14	FSM	ENSMUSG00000038909.17	ENSMUST00000072621.12	3324	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	277.302283100983	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
ENSMUST00000072634.15	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8739	False	NA	-9	True	AATAAA	-19	NA	31123087	31060852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000072697.13	chr3	-	2047	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_11	59.2580851965116	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	-6	True	AATAAA	-16	NA	153650269	153627993	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
ENSMUST00000072699.13	chrX	+	1571	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_1	126.240593708997	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599523	70604282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000072727.7	chr7	-	2285	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102829	143067315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUST00000072744.15	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	False	NA	-10	True	AATAAA	-21	NA	87313030	87285646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ENSMUST00000072751.13	chr10	+	1444	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUST00000072847.12	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUST00000072875.15	chr3	-	2654	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	0	0	0	0	multi-exon	TRUE	canonical	3	573	junction_1	36.7913482463625	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737403	157716555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ENSMUST00000072896.13	chr5	+	2221	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850876	21867692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUST00000072916.5	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ENSMUST00000072961.6	chr13	+	3199	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_25	60.5186237990473	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901459	19050981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ENSMUST00000073025.12	chr1	+	1706	8	FSM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	154.121870675152	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAATGTCTATGGAAAG	NA	False	NA	10	True	AATAAA	-10	NA	82702639	82730108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUST00000073120.11	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_8	32.2076595444831	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
ENSMUST00000073228.12	chr2	+	2669	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACTTGTGTGCTCAC	NA	False	NA	18	True	NA	NA	NA	151838454	151851178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUST00000073308.11	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000073339.7	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	698	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_35862268_35865773_35865930_35868440
ENSMUST00000073352.10	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
ENSMUST00000073388.13	chr11	+	2327	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716749	117730734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUST00000073410.12	chr7	-	1430	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATCACTGTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	41210253	41195097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ENSMUST00000073430.14	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUST00000073471.13	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	19225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68792408	68795360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
ENSMUST00000073570.12	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	4917	False	NA	92	True	NA	NA	NA	33848063	33850753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000073791.10	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	2953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
ENSMUST00000073868.9	chr10	+	885	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	0	0	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	9903	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4912	False	NA	0	True	AATAAA	-24	NA	127871443	127884502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
ENSMUST00000073927.5	chrX	-	2232	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100128978	100122827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ENSMUST00000074043.7	chr15	-	3044	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	0	0	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	-7	True	AATAAA	-18	NA	38300950	38294656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
ENSMUST00000074072.5	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4735	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	False	NA	NA	False	AATAAA	-33	NA	97897140	97896579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_97896600_97897100
ENSMUST00000074082.13	chr9	-	2129	11	FSM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	54.5879107495423	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGTCCTGGTTAGTGTG	8576	False	NA	-14	True	AATAAA	-31	NA	106125055	106111125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115436_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
ENSMUST00000074085.12	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	25671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000074259.15	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4589	False	NA	24	True	AATAAA	-18	NA	36172209	36176294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
ENSMUST00000074267.5	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	20453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUST00000074519.13	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUST00000074575.11	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUST00000074619.6	chrX	-	1645	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-7	True	AATAAA	-16	NA	72140701	72129900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
ENSMUST00000074628.13	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ENSMUST00000074680.8	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	108807136	108807931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108807100_108807900
ENSMUST00000074690.11	chr4	+	1573	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133829893	133854087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUST00000074792.7	chr9	+	2042	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCTGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65360336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUST00000074846.14	chr5	-	3240	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559674	149540309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUST00000074950.11	chrX	+	2426	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501927	133507803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133502083_133503440_133503512_133505603
ENSMUST00000075068.14	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611803	34744133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ENSMUST00000075175.12	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959402	70956944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUST00000075253.13	chr17	-	1752	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166376	33143661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
ENSMUST00000075280.12	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921735	41912004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUST00000075303.7	chr6	-	1928	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508280	120486454	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ENSMUST00000075363.10	chr4	+	1457	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000075418.15	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	83281166	83291536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUST00000075451.12	chr1	-	1651	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813869	194786097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ENSMUST00000075453.9	chr5	+	899	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146770004	146772795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000075491.14	chr8	+	1698	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980396	70987976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000075550.4	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	26.2865816530031	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912407	100896181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUST00000075610.13	chr7	+	1135	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972869	130989568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUST00000075630.10	chr15	-	441	4	FSM	ENSMUSG00000062683.12	ENSMUST00000075630.10	441	4	0	0	0	0	multi-exon	FALSE	canonical	3	4680	junction_1	53.4935094712953	6762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	7279	False	NA	NA	False	GGGGCT	-44	NA	102576184	102571448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145
ENSMUST00000075641.10	chr11	-	1633	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	0	0	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	46017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCAGTGGATAGT	NA	False	NA	NA	False	AATACA	-9	NA	33113206	33102286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000075667.5	chr7	-	1502	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCAGTCAACTTGT	NA	False	NA	28	True	NA	NA	NA	138447989	138437561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_138438760_138447685
ENSMUST00000075671.5	chr7	-	3388	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995909	125982025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUST00000075693.12	chr4	+	1321	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171559	107217019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
ENSMUST00000075775.6	chr4	+	3993	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2283	False	NA	NA	False	AATAAA	-19	NA	147106306	147145251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
ENSMUST00000075829.3	chr10	-	666	6	FSM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	1622.28826045188	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337789	95316667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337751
ENSMUST00000075853.6	chr13	+	692	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	1533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	51799267	51804696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_51799508_51803620_51803749_51804372
ENSMUST00000075895.9	chr1	+	1917	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954321	171962850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUST00000075896.7	chr8	+	2391	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5194	False	NA	9	True	AATAAA	-14	NA	125739735	125760931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUST00000075954.9	chr12	+	2209	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548357	24608538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUST00000075980.12	chr11	+	779	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4647	False	NA	NA	False	AATAAA	-19	NA	68961631	68963856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
ENSMUST00000076022.7	chr4	+	2682	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642918	148666858	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUST00000076051.12	chr5	+	2661	14	FSM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	64.1450833343938	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	80	False	NA	2	True	AATAAA	-18	NA	120649316	120672085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
ENSMUST00000076070.9	chr15	-	877	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296215	93283986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUST00000076095.14	chr5	-	2060	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGATGCATCCCGTGG	NA	False	NA	-19	True	ACTAAA	-32	NA	138980792	138961768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ENSMUST00000076155.6	chr18	+	1791	2	FSM	ENSMUSG00000059040.6	ENSMUST00000076155.6	1791	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAACAGACATAGCTG	NA	False	NA	NA	False	NA	NA	NA	48178401	48181479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_48178513_48179799
ENSMUST00000076264.8	chr5	+	3299	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUST00000076265.13	chrX	-	2344	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUST00000076354.13	chrX	+	1733	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10351396	10462844	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
ENSMUST00000076431.13	chr2	+	3135	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	644	False	NA	19	True	AATAAA	-16	NA	26279350	26287134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUST00000076664.7	chr17	+	2058	4	FSM	ENSMUSG00000057409.8	ENSMUST00000076664.7	2058	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	54.7073019704764	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAAAAGTTTA	3733	False	NA	NA	False	CATAAA	-42	NA	21711517	21730026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_21711579_21720472_21720565_21725242_21725370_21728248
ENSMUST00000076694.13	chr10	-	1612	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	0	0	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	5659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	0	True	ATTAAA	-18	NA	90959921	90952435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUST00000076961.9	chr7	-	899	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	4495	False	NA	-5	True	AATAAA	-24	NA	24672179	24669176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
ENSMUST00000077078.12	chr11	-	2787	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ENSMUST00000077208.6	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	False	NA	NA	False	AATAAA	-37	NA	108166211	108165762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_108165800_108166200
ENSMUST00000077220.14	chr5	-	1617	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
ENSMUST00000077243.5	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000077290.9	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
ENSMUST00000077338.12	chr7	+	1465	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1739	False	NA	39	True	NA	NA	NA	25318838	25324976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ENSMUST00000077340.14	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
ENSMUST00000077353.15	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ENSMUST00000077367.11	chr3	+	1779	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTCCTGTGCTATCTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	89110234	89115986	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUST00000077376.3	chr5	+	1677	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	7.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5398	False	NA	17	True	NA	NA	NA	124466160	124479907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_124466293_124476689_124476999_124478671
ENSMUST00000077385.15	chr7	-	2546	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	130	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2832	False	NA	-4	True	AATAAA	-14	NA	5017677	5010057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_5012205_5015676_5016022_5017623
ENSMUST00000077435.5	chr19	-	888	1	FSM	ENSMUSG00000057605.5	ENSMUST00000077435.5	888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTAACCTCATTAAACA	2199	False	NA	-44	True	NA	NA	NA	45439634	45438746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_45438700_45439600
ENSMUST00000077494.13	chr17	-	1340	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000077535.5	chr17	-	437	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568748	36566536	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
ENSMUST00000077577.8	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	18498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUST00000077605.12	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	AATAAA	-17	NA	22926508	22932696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUST00000077609.12	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	796	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1183	False	NA	37	True	ATTAAA	-20	NA	127566661	127581204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUST00000077626.13	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ENSMUST00000077680.10	chrX	+	3277	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7628896	7641441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000077755.11	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUST00000077798.13	chr2	+	2739	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867577	84877453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUST00000077839.13	chr10	-	1813	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121084	67102467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
ENSMUST00000077851.10	chr4	+	4189	22	FSM	ENSMUSG00000028397.14	ENSMUST00000077851.10	4189	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.9925840495591	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74160733	74324097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_74160878_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
ENSMUST00000077856.13	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	17776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2241	False	NA	62	True	ATTAAA	-18	NA	101333123	101336355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000077915.10	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	13273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559373	114563157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000077938.10	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUST00000078021.13	chr5	-	2015	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745505	107696832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUST00000078079.11	chr18	+	2865	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	20	True	ATTAAA	-17	NA	46730770	46743278	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUST00000078124.8	chr12	-	2940	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAAGCTGTTGAGATG	NA	False	NA	-11	True	AATAAA	-12	NA	54909662	54905601	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUST00000078155.12	chr6	-	2437	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	0	0	0	multi-exon	TRUE	canonical	1	70	junction_10	46.9877234375763	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	8	True	NA	-1	True	AATAAA	-19	NA	29212296	29200435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
ENSMUST00000078218.11	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984404	83000875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUST00000078222.9	chr2	+	1518	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUST00000078286.6	chr17	-	2606	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	0	0	0	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGCCGTTCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	47093582	47084832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUST00000078332.13	chr1	+	1894	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702610	82730111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ENSMUST00000078374.13	chr9	-	3520	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	216.387107234962	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8191	False	NA	-1	True	AATAAA	-17	NA	95394049	95343030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
ENSMUST00000078432.5	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	2291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUST00000078509.12	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1945	False	NA	-17	True	NA	NA	NA	31856139	31831614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUST00000078572.9	chr9	-	1894	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6124	False	NA	-16	True	AATAAA	-17	NA	21504068	21499977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUST00000078589.7	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	False	NA	-20	True	NA	NA	NA	117648178	117616271	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_117616599_117637866_117637974_117648089
ENSMUST00000078665.13	chr8	+	1333	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798385	85801791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUST00000078676.6	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7657	False	NA	-7	True	AATAAA	-17	NA	115932268	115924161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ENSMUST00000078775.13	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
ENSMUST00000078803.5	chr15	-	911	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_9	85.8889607589177	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUST00000078804.12	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	13973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000078845.13	chr7	+	637	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	146	False	NA	NA	False	AATAAA	-19	NA	28140351	28145964	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUST00000078918.10	chr7	-	1053	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAATACCATTACA	NA	False	NA	-1	True	AATAAA	-18	NA	89590274	89567910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
ENSMUST00000079033.6	chr19	-	885	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACAAATGTGGGT	963	False	NA	NA	False	ATTAAA	-5	NA	44134885	44127697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ENSMUST00000079085.11	chr3	-	480	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	15111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130524047	130520487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
ENSMUST00000079213.6	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUST00000079223.11	chr4	+	1891	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445743	95815176	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ENSMUST00000079414.12	chr7	+	2610	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096479	35138114	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ENSMUST00000079419.12	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	14907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
ENSMUST00000079421.15	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ENSMUST00000079589.11	chr11	-	3286	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9161	False	NA	60	True	NA	NA	NA	102207506	102196749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ENSMUST00000079634.8	chr7	+	1020	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358588	25367457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUST00000079644.13	chr4	-	1628	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	0	0	0	0	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	1206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151801	119135177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ENSMUST00000079648.12	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458798
ENSMUST00000079691.13	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUST00000079703.11	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246135	59473533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUST00000079706.7	chr15	-	438	1	FSM	ENSMUSG00000049414.8	ENSMUST00000079706.7	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTTGAATGAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	83290264	83289826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83289800_83290300
ENSMUST00000079716.6	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	22228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	False	NA	21	True	ATTAAA	-37	NA	75133547	75136452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUST00000079724.9	chr3	-	1139	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	0	0	0	0	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	1661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7190	False	NA	NA	False	AATAAA	-26	NA	89906004	89902752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ENSMUST00000079735.12	chr15	-	886	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	6827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	False	NA	-20	True	AATAAA	-27	NA	34443786	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUST00000079883.12	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438713	80451617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUST00000079949.13	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	1641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000079961.14	chr8	+	2707	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941191	95041488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUST00000079970.6	chr7	-	1593	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ENSMUST00000079987.13	chrX	-	2530	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ENSMUST00000080001.9	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7283	False	NA	0	True	AATAAA	-18	NA	171122597	171116135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUST00000080058.11	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866227	26858082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ENSMUST00000080202.12	chr11	-	1727	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515840	120509197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUST00000080281.14	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	18912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ENSMUST00000080316.8	chr16	+	720	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238563	32247913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
ENSMUST00000080356.10	chr7	-	1365	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_6	315.533102683203	2100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895696	26886431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUST00000080411.13	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUST00000080492.7	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	7016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920415	56921243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
ENSMUST00000080536.8	chr8	-	3793	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTTTGACTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	80438369	80410090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
ENSMUST00000080557.12	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124392026	124373775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUST00000080713.5	chrX	+	2507	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345738	47371330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
ENSMUST00000080723.11	chr6	+	3285	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690713	52743765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUST00000080732.10	chr5	+	2134	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115198	138132476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
ENSMUST00000080771.10	chr10	+	2844	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATACTTGATCTTTAT	NA	False	NA	4	True	AATAAA	-16	NA	41326378	41341570	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
ENSMUST00000080812.14	chr6	-	1824	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	0	0	0	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	-9	True	NA	-7	True	AATAAA	-18	NA	30391022	30366378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
ENSMUST00000080813.5	chr7	-	494	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	13475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80995002	80992480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUST00000080839.2	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	2077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUST00000080856.14	chr13	-	4325	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	-6	True	ATTAAA	-19	NA	107073466	106930946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
ENSMUST00000080860.13	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110744	18089423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUST00000080926.13	chr4	+	2027	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	0	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	14561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321408	150333336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUST00000081026.11	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	FALSE	canonical	1	55	junction_1	1176.16816635869	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
ENSMUST00000081064.12	chrX	+	3227	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCCGAATTTTTTTT	NA	False	NA	6	True	AATAAA	-17	NA	133208832	133263388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUST00000081111.14	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	3766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	995	False	NA	36	True	AATAAA	-29	NA	108437484	108442783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUST00000081180.7	chr1	+	625	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	3394.14034280651	4509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730529	36732467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
ENSMUST00000081202.6	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_157209561_157220968_157221175_157237829
ENSMUST00000081333.11	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	False	NA	NA	False	AAGAAA	-45	NA	24257969	24238816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUST00000081335.13	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_156682159_156686075_156686302_156695048
ENSMUST00000081387.11	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	1884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740076	117746558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUST00000081506.11	chr8	-	1791	4	FSM	ENSMUSG00000063253.12	ENSMUST00000081506.11	1791	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	137.734849943247	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTGTGTGTGTGTTT	7694	False	NA	-2	True	AATAAA	-16	NA	84184978	84161123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84184889
ENSMUST00000081551.14	chr1	+	2547	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4928036	4968128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUST00000081567.11	chr5	+	4060	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000081593.13	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	6479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
ENSMUST00000081631.10	chr2	-	1894	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	109108635	108922641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
ENSMUST00000081649.10	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	4102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140535087_140535582
ENSMUST00000081650.15	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	69848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUST00000081677.12	chr1	-	896	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
ENSMUST00000081710.12	chr2	+	2631	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042177	71093647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000081721.13	chr6	-	2787	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	0	0	0	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ENSMUST00000081838.7	chr2	-	1187	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	False	NA	-10	True	ATTAAA	-9	NA	29983647	29980962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
ENSMUST00000081840.6	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	11749	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	-24	True	AATAAA	-22	NA	115785708	115782465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUST00000081848.13	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	2593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ENSMUST00000081940.11	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	7808	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963067	70960915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
ENSMUST00000081946.5	chr7	-	1515	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	0	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2656	False	NA	-1	True	NA	NA	NA	28011497	28004940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUST00000081980.7	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	False	NA	10	True	ATTAAA	-21	NA	59839031	59853031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59839305_59851384
ENSMUST00000082092.5	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	7938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559451	114563157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000082094.5	chr6	-	2581	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3048	False	NA	-3	True	AATAAA	-26	NA	71885734	71857623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUST00000082120.5	chr8	-	1772	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	0	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760017	43748103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUST00000082136.7	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
ENSMUST00000082223.13	chr5	+	2045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	5229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	24	True	AATAAA	-18	NA	108048367	108056871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUST00000082319.15	chr18	+	1115	8	FSM	ENSMUSG00000024400.17	ENSMUST00000082319.15	1115	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	160.52299727161	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTAGTTTTTCCCTCT	5647	False	NA	NA	False	AGTAAA	-17	NA	31937142	31974695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_31974492
ENSMUST00000082431.6	chr12	-	1010	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGGTCTCTGTCTTC	NA	False	NA	-5	True	AATAAA	-16	NA	76842273	76839110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_76839775_76841927
ENSMUST00000082437.11	chr3	+	1514	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276186	144303441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUST00000084007.4	chr18	-	164	1	FSM	ENSMUSG00000094306.3	ENSMUST00000084007.4	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	14780987	14780823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_14780800_14781000
ENSMUST00000084124.7	chr4	-	2218	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251164	149234447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUST00000084149.10	chr4	+	2813	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	76.9805170156709	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	147216494	147265036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUST00000084250.11	chr4	-	2285	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5439	False	NA	-10	True	AATAAA	-21	NA	132073058	132059229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ENSMUST00000084296.10	chr4	-	1626	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830710	124812257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ENSMUST00000084319.11	chr4	+	1134	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266533	118272308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUST00000084383.10	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_9	72.7799809002085	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUST00000084418.4	chr7	-	1490	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTCTCAGCCTG	NA	False	NA	-34	True	AATAAA	-18	NA	141614802	141562286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
ENSMUST00000084497.12	chr7	+	2892	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	16	True	AATAAA	-18	NA	132460953	132486840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
ENSMUST00000084500.8	chr7	-	2152	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	132178127	132159206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
ENSMUST00000084525.12	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUST00000084526.12	chr4	+	3718	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	23	True	AATAAA	-23	NA	62278963	62310006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUST00000084721.8	chr13	+	1222	3	FSM	ENSMUSG00000078941.10	ENSMUST00000084721.8	1222	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100787850	100792567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000084727.11	chr7	+	3003	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	55.3423285861133	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660916	109694594	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ENSMUST00000084867.9	chr9	-	874	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	-17	True	AATAAA	-13	NA	114610900	114585906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
ENSMUST00000084937.11	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000084947.10	chr12	+	2433	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	1	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_111645397_111647235_111647503_111649028
ENSMUST00000085192.7	chr12	-	3399	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497777	84477490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
ENSMUST00000085248.12	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	4370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ENSMUST00000085256.8	chr9	+	816	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	0	0	0	multi-exon	TRUE	canonical	3	175	junction_1	109	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAGAATATTAATGCAA	NA	False	NA	NA	False	AATAAA	-35	NA	89093209	89122293	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_89093365_89097261_89097524_89121894
ENSMUST00000085272.7	chr7	+	1418	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9894	False	NA	-5	True	NA	NA	NA	49408876	49423723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUST00000085375.13	chr7	+	1185	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803737	44809488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUST00000085393.13	chr9	+	2328	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896785	69915537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUST00000085519.13	chr9	+	2113	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248610	62286094	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUST00000085797.6	chr1	+	2473	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180720672	180726668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUST00000085851.12	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28465939	28458456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUST00000085909.9	chr9	+	2126	11	FSM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	77.3110600108419	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	47441554	47762327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ENSMUST00000085912.10	chr1	+	2182	8	FSM	ENSMUSG00000038034.16	ENSMUST00000085912.10	2182	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	261.703446438046	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3147	False	NA	19	True	AATAAA	-19	NA	172139337	172147408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_172139366_172140057_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ENSMUST00000085941.12	chr5	-	740	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015755	137011043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUST00000086046.10	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7767	False	NA	18	True	AATAAA	-17	NA	129802126	129835391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUST00000086058.13	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUST00000086112.8	chr7	+	836	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	784	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16472334	16483219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
ENSMUST00000086349.5	chr7	+	1142	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2940	False	NA	5	True	AATAAA	-15	NA	5018468	5021486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_5018560_5020435
ENSMUST00000086374.8	chr9	-	1264	3	FSM	ENSMUSG00000096472.3	ENSMUST00000086374.8	1264	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.5	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGTTTTGTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	21202449	21199761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21200629_21201720_21201773_21202104
ENSMUST00000086399.6	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
ENSMUST00000086458.10	chr9	-	2056	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	23	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556063	20549084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20555490
ENSMUST00000086519.12	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	30960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697525	115701786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUST00000086535.12	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	18655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406922	39410992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000086614.12	chr1	-	4210	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_3	27.0654761642946	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030199	127881920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ENSMUST00000086635.9	chr5	+	2761	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.518821024341	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUST00000086643.12	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
ENSMUST00000086833.13	chr5	+	1411	8	FSM	ENSMUSG00000029304.15	ENSMUST00000086833.13	1411	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2820.707358093	3912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	False	NA	29	True	AATAAA	-16	NA	104582983	104588914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104584766_104584770_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000086851.2	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
ENSMUST00000086869.6	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	344	False	NA	8	True	NA	NA	NA	56266173	56275285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUST00000087026.13	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	1424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUST00000087133.11	chr5	+	3371	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCTTAAGCCTTATA	NA	False	NA	17	True	AATAAA	-27	NA	76677157	76718141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ENSMUST00000087215.7	chr1	+	3268	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	860	False	NA	38	True	AATAAA	-23	NA	74545216	74570001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUST00000087324.7	chr5	+	2369	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	64250292	64285694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUST00000087351.9	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148880	103153382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUST00000087475.11	chr1	-	1823	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	4340	False	NA	-17	True	AATAAA	-17	NA	59158965	59139755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
ENSMUST00000087514.9	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	23	True	AATAAA	-24	NA	38377813	38391650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUST00000087563.7	chr2	+	1346	6	FSM	ENSMUSG00000039069.20	ENSMUST00000087563.7	1346	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	31.6884837125414	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179720415	179727695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000087566.11	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	6998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
ENSMUST00000087582.13	chr17	-	2370	17	FSM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	626.847466369411	2932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5740	False	NA	-8	True	AATAAA	-13	NA	33904393	33865212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ENSMUST00000087675.9	chr6	+	1729	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	False	NA	20	True	AATACA	-20	NA	137731555	137814892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUST00000087737.10	chr5	-	1987	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671335	34653430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
ENSMUST00000087971.11	chr2	-	2438	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797192	168767280	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUST00000088169.7	chr19	-	2762	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9039	False	NA	-18	True	AATAAA	-17	NA	7460567	7403265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUST00000088223.7	chr19	+	1103	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973539	6976414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUST00000088246.6	chr6	-	1509	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	1112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCCTCTCTAGTGT	3461	False	NA	-8	True	AATAAA	-28	NA	125263005	125255236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ENSMUST00000088248.13	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	1328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUST00000088512.13	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	901	False	NA	NA	False	AATAAA	-24	NA	24633636	24644875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000088785.6	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ENSMUST00000088922.5	chr14	-	1467	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
ENSMUST00000089052.11	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714676	101668358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
ENSMUST00000089140.13	chr2	+	1486	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	0	0	0	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTCTGTTATATAGAAA	NA	False	NA	24	True	AAGAAA	-6	NA	151336101	151353230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000089287.7	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUST00000089559.11	chr2	-	1238	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
ENSMUST00000089570.7	chr6	+	1216	6	FSM	ENSMUSG00000054226.14	ENSMUST00000089570.7	1216	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	87.3026918256247	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGATTTGGACTCTTA	3418	False	NA	NA	False	ATTAAA	-18	NA	85892728	85905502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85900114_85900199_85901341_85901505_85904222_85904346_85904789
ENSMUST00000089645.13	chr6	-	1725	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1897	False	NA	2	True	AATAAA	-31	NA	83031552	83028246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUST00000089680.10	chr15	-	973	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1574.61569007443	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781168	75767338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
ENSMUST00000089765.9	chr15	+	871	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	8	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962240	72965924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_72962433_72964681_72964809_72965372
ENSMUST00000089950.11	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6100	False	NA	-2	True	AATAAA	-15	NA	153618646	153612925	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUST00000090002.10	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000090023.13	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUST00000090031.12	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	1526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	False	NA	26	True	AATAAA	-39	NA	146205561	146211327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUST00000090046.12	chr2	-	2897	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234570	120185792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUST00000090192.12	chr16	-	2609	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	0	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	1490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019356	16969878	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUST00000090205.5	chr14	-	426	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	30850860	30846635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30846791_30850589
ENSMUST00000090546.6	chr3	-	2864	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	15	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5274	False	NA	-14	True	AATAAA	-15	NA	108469782	108463740	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108466277_108467502_108467635_108469586
ENSMUST00000090561.10	chr3	+	1686	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUST00000090608.6	chr2	+	2308	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_91541597_91542424_91543211_91550698
ENSMUST00000090678.11	chr3	-	2407	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	0	0	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708652	105634582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUST00000090682.4	chr2	+	2437	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2338	False	NA	NA	False	AATAAA	-42	NA	90735086	90740905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
ENSMUST00000090749.13	chr11	+	746	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	5811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365869	6369815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUST00000090759.5	chr3	+	1754	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	0	0	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	1757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	False	NA	11	True	NA	NA	NA	97066092	97083890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUST00000090852.11	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	False	NA	-38	True	NA	NA	NA	69691905	69702130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000090976.10	chr2	-	1153	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGACAGACTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUST00000091288.13	chr2	+	2184	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	0.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCGGGGTTTGTTCT	NA	False	NA	7	True	ATTAAA	-17	NA	131751847	131780349	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_131751924_131754114_131754213_131778339
ENSMUST00000091295.14	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
ENSMUST00000091299.8	chr13	-	1988	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	False	NA	NA	False	CATAAA	-17	NA	100867447	100839138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUST00000091328.4	chr7	+	1716	8	FSM	ENSMUSG00000063065.14	ENSMUST00000091328.4	1716	8	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	19.3938765846231	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	6212	False	NA	31	True	TATAAA	-24	NA	126359768	126364991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000091374.9	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	1774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUST00000091878.6	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
ENSMUST00000091879.12	chr17	-	3265	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_3	17.9041894538681	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181432	22145940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
ENSMUST00000092033.4	chr10	-	1481	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	False	NA	NA	False	TTTAAA	-14	NA	128012348	127968975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ENSMUST00000092041.11	chr18	-	2911	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815885	14758687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000092170.7	chr10	-	3012	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198172	115176646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ENSMUST00000092425.11	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	6391.5163271324	9349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917535	97921318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000092559.13	chr11	+	2083	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992507	103003026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUST00000092567.11	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710526	102690404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102692022_102693666_102693743_102710329
ENSMUST00000092569.13	chr11	-	2366	5	FSM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	239.593405585379	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	102588608	102575511	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ENSMUST00000092620.6	chr10	-	635	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATCAATAGAC	NA	False	NA	-8	True	AATAAA	-21	NA	29575376	29574741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_29574700_29575400
ENSMUST00000092688.12	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331915	100320178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUST00000092689.9	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331846	100320181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
ENSMUST00000093040.13	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
ENSMUST00000093043.7	chr8	+	1681	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCTGTCGTTGTGAGG	NA	False	NA	7	True	AATGAA	-21	NA	124245572	124263389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
ENSMUST00000093078.13	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUST00000093107.12	chr11	+	2263	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991749	54022478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUST00000093120.13	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
ENSMUST00000093132.13	chr11	+	1949	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153940	51172591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUST00000093140.5	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4011	False	NA	129	True	AATAAA	-17	NA	120489357	120496602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUST00000093169.3	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1797	False	NA	NA	False	AATAAA	-30	NA	45943138	45942180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_45942200_45943100
ENSMUST00000093191.3	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724468	34700016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
ENSMUST00000093201.13	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	36081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000093336.8	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
ENSMUST00000093346.6	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
ENSMUST00000093357.12	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
ENSMUST00000093456.12	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000093517.7	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	False	NA	NA	False	TTTAAA	-9	NA	47070429	47091752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUST00000093658.3	chr19	-	148	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGCAGAAATGTAGCT	NA	False	NA	-9	True	NA	NA	NA	8866049	8865901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8865900_8866000
ENSMUST00000093795.10	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUST00000093943.10	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	266.87570140423	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	96679984	96699466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
ENSMUST00000093955.12	chr11	+	706	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUST00000094051.6	chr14	+	1647	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAGAAAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	43951188	43952835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_43951200_43952800
ENSMUST00000094065.5	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
ENSMUST00000094154.6	chr7	-	2215	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	90	True	ATTAAA	-17	NA	99002446	98994595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ENSMUST00000094218.4	chr2	+	2275	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	0	0	0	0	multi-exon	TRUE	canonical	3	124	junction_2	30.6879455161143	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367055	180384073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUST00000094245.4	chr5	+	1259	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	513	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5041	False	NA	38	True	AATAAA	-18	NA	135015067	135016326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135015100_135016300
ENSMUST00000094280.4	chr5	-	915	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	8396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2064	False	NA	-3	True	AATAAA	-18	NA	129916311	129909996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ENSMUST00000094357.11	chr5	+	1366	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAATCTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121601214	121633457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
ENSMUST00000094361.11	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	13936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUST00000094434.13	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	17610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109308	45107367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUST00000094467.6	chr2	+	2540	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	12	True	AATAAA	-17	NA	150590961	150613595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
ENSMUST00000094632.6	chr7	+	1868	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	0	0	0	0	multi-exon	TRUE	canonical	3	180	junction_5	21.0516824347446	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	278	False	NA	25	True	AATAAA	-33	NA	28441426	28453296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ENSMUST00000094657.10	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	3430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2331	False	NA	19	True	AATAAA	-19	NA	132262860	132281053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUST00000094693.11	chr12	+	1527	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	4472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	False	NA	NA	False	AATAAA	-23	NA	80992277	80997281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000094695.12	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
ENSMUST00000094712.5	chr4	+	1120	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019838	127023437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_127019987_127021611_127021793_127022646
ENSMUST00000094815.5	chr7	-	1875	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	2367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUST00000094917.10	chr1	-	1869	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
ENSMUST00000095017.11	chr5	-	3498	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGATTTTGAGCCATGCA	NA	False	NA	-5	True	AATAAA	-20	NA	9211749	9168871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUST00000095063.11	chr4	-	3237	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUST00000095145.12	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	-5	True	NA	NA	False	AATAAA	-9	NA	11558941	11585744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
ENSMUST00000095157.11	chr14	-	2666	11	FSM	ENSMUSG00000068245.15	ENSMUST00000095157.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	111.176481325863	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATGTTGCATCAAAATAT	NA	False	NA	NA	False	AATAAA	-27	NA	59602919	59584855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59602815
ENSMUST00000095188.7	chr17	+	1595	11	FSM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_6	13.9484766193302	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGTTTCAATCTATC	2173	False	NA	10	True	AATAAA	-26	NA	85397979	85766016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_85398292_85403917_85404091_85421210_85421276_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
ENSMUST00000095214.10	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845396	88861734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
ENSMUST00000095224.11	chr17	+	3106	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_6	66.4862955803675	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	8062	False	NA	35	True	AATAAA	-26	NA	56892058	56913294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ENSMUST00000095259.10	chr8	+	2109	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941364	71946044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUST00000095273.7	chr8	+	1161	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	461	False	NA	9	True	NA	NA	NA	70583996	70586389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ENSMUST00000095410.8	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5346	False	NA	19	True	AATAAA	-18	NA	110704425	110761462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_110704712_110745729_110745913_110759547
ENSMUST00000095458.6	chr13	+	1918	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	47	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108180979	108185706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108181021_108182958_108183103_108183973
ENSMUST00000095579.11	chr17	-	1450	14	FSM	ENSMUSG00000041319.15	ENSMUST00000095579.11	1450	14	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_13	93.5049281997111	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	754	False	NA	-21	True	AATAAA	-14	NA	23892856	23887591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
ENSMUST00000095725.11	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097481	43316598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ENSMUST00000095786.6	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUST00000095795.5	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUST00000095893.11	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUST00000095932.5	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
ENSMUST00000096014.5	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	4150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079082	47071906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUST00000096045.9	chr16	+	1479	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUST00000096057.5	chr16	-	1240	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544971	45531592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
ENSMUST00000096109.11	chr16	-	993	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918556	31903241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
ENSMUST00000096239.7	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1357	False	NA	11	True	AATAAA	-26	NA	8931210	8943574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
ENSMUST00000096240.3	chr19	+	3135	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
ENSMUST00000096246.5	chr19	+	3860	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUST00000096249.7	chr19	+	3274	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	20	True	AATAAA	-21	NA	8870368	8875252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8870513_8872122
ENSMUST00000096253.7	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	0	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	False	NA	-8	True	AATGAA	-25	NA	8858287	8857377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8857981_8858069
ENSMUST00000096255.7	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	1615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000096261.5	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	1417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
ENSMUST00000096272.11	chr16	-	2663	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAAACAA	NA	False	NA	-40	True	NA	NA	NA	11727287	11621584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
ENSMUST00000096321.3	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
ENSMUST00000096368.4	chrX	+	2491	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTTGAATAATGCT	4256	False	NA	22	True	AATAAA	-28	NA	93679674	93682165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_93679700_93682200
ENSMUST00000096447.9	chrX	-	1773	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCCTAAGCACAACGACT	NA	False	NA	NA	False	AATAAA	-20	NA	52459379	52433884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUST00000096482.10	chr15	-	3118	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGAGCTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	9140452	9112072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
ENSMUST00000096573.4	chr18	-	710	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATCCCATTT	NA	False	NA	-1	True	NA	NA	NA	35795239	35793068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUST00000096639.12	chr7	-	2249	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714365	101668343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUST00000096744.8	chr7	+	2813	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	230	False	NA	14	True	AATATA	-8	NA	3339058	3347865	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUST00000096990.10	chr16	-	1747	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630376	18599202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
ENSMUST00000097014.7	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	2352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851584	98847717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUST00000097175.5	chr16	+	1948	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTCACTCGCCTG	NA	False	NA	NA	False	AATACA	-17	NA	48130839	48140086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUST00000097216.5	chr7	+	1948	11	FSM	ENSMUSG00000030796.18	ENSMUST00000097216.5	1948	11	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	103.303436535287	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	6888	False	NA	NA	False	AATAAA	-29	NA	44866634	44883059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44866770_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUST00000097299.10	chr17	+	1206	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1526	False	NA	NA	False	AATAAA	-31	NA	57369230	57372918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
ENSMUST00000097543.8	chr1	+	3337	14	FSM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	362.778266997786	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCACTGTGGGAT	NA	False	NA	10	True	ATTAAA	-14	NA	151220268	151240166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUST00000097547.10	chr1	-	2851	13	FSM	ENSMUSG00000006010.15	ENSMUST00000097547.10	2851	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	38.2014942988709	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	951	False	NA	NA	False	AATAAA	-13	NA	150268513	150237063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ENSMUST00000097590.5	chr18	-	3980	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	0	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAATCTTTATAC	NA	False	NA	41	True	AATAAA	-17	NA	42395259	42335362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ENSMUST00000097626.10	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUST00000097642.4	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_92565126_92567408_92567482_92569601
ENSMUST00000097646.5	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUST00000097709.11	chr1	-	2302	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218340	65197774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
ENSMUST00000097715.4	chr19	-	1398	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	27.5	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGACAGTGTAGGGTC	NA	False	NA	NA	False	NA	NA	NA	44994881	44993267	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUST00000097737.5	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9080	False	NA	NA	False	AATAAA	-14	NA	155976238	155973318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUST00000097747.9	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334459	155341141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155335108_155335212_155335494_155340591
ENSMUST00000097961.9	chr4	+	3079	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603901	99651697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUST00000098036.9	chr7	-	1571	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182362	126171257	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
ENSMUST00000098048.6	chr7	+	1679	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	750	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	0	True	AATAAA	-17	NA	126086532	126089899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
ENSMUST00000098180.10	chr7	+	3827	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	0	0	0	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103868001	103884359	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ENSMUST00000098300.6	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_8	19.8289560996034	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020812	97041392	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUST00000098378.9	chr7	+	2776	9	FSM	ENSMUSG00000074071.12	ENSMUST00000098378.9	2776	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	48.9283596189367	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67949860	68012835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_67949872_67950578_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUST00000098407.3	chr16	+	1998	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	0	0	0	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571273	84607884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUST00000098461.10	chr7	-	1227	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTGGTAAAAA	4419	False	NA	-13	True	AATAAA	-25	NA	44888264	44883055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ENSMUST00000098594.4	chr7	+	393	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5674	False	NA	24	True	AATAAA	-25	NA	29883568	29885455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
ENSMUST00000098674.6	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUST00000098780.10	chr7	-	2022	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	27.4902887640592	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2760	False	NA	-1	True	AATAAA	-18	NA	18644340	18624807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUST00000098801.9	chr7	+	934	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630048	15637945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
ENSMUST00000098814.13	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUST00000098937.10	chr9	-	1673	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
ENSMUST00000098942.6	chr9	-	1366	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	1840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671599	21666737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ENSMUST00000098990.10	chr3	-	2799	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489841	84403399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
ENSMUST00000099009.9	chr2	+	3823	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3035	False	NA	NA	False	AATAAA	-25	NA	175968361	175982121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
ENSMUST00000099072.11	chr2	-	722	8	FSM	ENSMUSG00000078919.11	ENSMUST00000099072.11	722	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	159.537469209063	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCACATAAAAGAAATGAT	NA	False	NA	-40	True	AATGAA	-39	NA	168072248	168052461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUST00000099151.6	chr3	+	2057	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	495	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4607	False	NA	19	True	AATAAA	-24	NA	34704553	34706610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34704600_34706600
ENSMUST00000099173.11	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	6852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	3632	False	NA	-8	True	AATAAA	-32	NA	154734855	154713329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUST00000099224.10	chr2	+	4206	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068758	152123772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUST00000099272.3	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146770011	146772796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000099304.4	chr2	-	2127	13	FSM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.3739138796905	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908705	139675399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUST00000099384.4	chr13	+	2407	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085956	74109014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUST00000099475.12	chr2	+	525	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279863	121281535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281178
ENSMUST00000099484.9	chr5	+	451	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8371	False	NA	NA	False	NA	NA	NA	110144387	110155333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_110144500_110154809_110154937_110155121
ENSMUST00000099496.4	chr13	-	1678	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248113	55176107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUST00000099554.5	chr16	-	1333	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524292	90516199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
ENSMUST00000099985.6	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_30073223_30074461_30074576_30076356
ENSMUST00000100015.6	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044677	72967870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000100036.10	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000100052.11	chr16	-	3899	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2273	False	NA	NA	False	AATATA	-16	NA	21982049	21877758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
ENSMUST00000100099.10	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUST00000100125.12	chr16	-	1248	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATCTCTGTTTGCAGT	7186	False	NA	97	True	NA	NA	NA	17349000	17345845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
ENSMUST00000100134.10	chr11	+	1925	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1394	False	NA	-3	True	ATTAAA	-14	NA	120675100	120679923	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
ENSMUST00000100162.5	chr15	+	1676	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	1105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181336	103208295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
ENSMUST00000100171.3	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662106	34666543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUST00000100196.9	chr16	+	1755	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1280	False	NA	17	True	AATAAA	-18	NA	5051484	5062767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ENSMUST00000100219.5	chr2	-	2104	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	2248	False	NA	24	True	AATAAA	-44	NA	30176346	30174242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30174200_30176300
ENSMUST00000100220.5	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
ENSMUST00000100248.6	chr11	-	1375	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUST00000100339.9	chr14	-	1090	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
ENSMUST00000100392.5	chr11	+	2547	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139707	102156013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ENSMUST00000100410.10	chr5	+	3148	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121475	149152241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUST00000100483.3	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846665	143839521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
ENSMUST00000100484.6	chr15	-	1899	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUST00000100497.11	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	8341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ENSMUST00000100527.13	chr15	-	1881	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952762	75942030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUST00000100655.5	chr15	-	1341	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	False	NA	-9	True	AATAAA	-40	NA	57897711	57885654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
ENSMUST00000100799.9	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	11006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198725	4200736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUST00000101014.9	chr11	+	657	4	FSM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6885.97448925471	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATTAAAGACTGCTTA	NA	False	NA	9	True	AAGAAA	-41	NA	68792435	68795336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68792639_68793095_68793263_68794004_68794146_68795190
ENSMUST00000101070.5	chr6	+	1201	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	0	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTGTTGGAGATTTGAT	NA	False	NA	33	True	AATAAA	-37	NA	113419529	113425190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113419759_113424218
ENSMUST00000101071.4	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_105183961_105184917_105185089_105188791
ENSMUST00000101087.10	chr5	+	3625	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCGGTATTGGCATTTT	NA	False	NA	28	True	AATAAA	-36	NA	77122529	77147784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
ENSMUST00000101146.4	chr12	+	1913	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594455	98636071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUST00000101165.9	chr12	+	2158	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACTGTTCCTTCTCAA	NA	False	NA	10	True	AATAAA	-23	NA	88327323	88428489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUST00000101212.9	chrX	-	1996	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963317	138907553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
ENSMUST00000101251.8	chrX	+	3085	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208903	133263385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUST00000101340.11	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43317029	43311095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
ENSMUST00000101343.2	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
ENSMUST00000101362.8	chrX	-	2371	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100128958	100122826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
ENSMUST00000101375.5	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000101394.5	chr11	-	1315	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_30927747_30929564_30929601_30936111
ENSMUST00000101486.5	chrX	+	1564	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	AATAAA	-8	NA	72235827	72246526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUST00000101506.10	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
ENSMUST00000101525.9	chr11	+	1157	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	1874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068106	9086170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000101526.9	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUST00000101531.10	chrX	-	3671	25	FSM	ENSMUSG00000031139.17	ENSMUST00000101531.10	3671	25	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_24	117.379696095856	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59193060	59101315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59192833
ENSMUST00000101588.2	chrX	+	1536	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGCCTGTGATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51880076	51888345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_51880203_51886935
ENSMUST00000101636.3	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
ENSMUST00000101644.10	chr11	+	1853	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5180	False	NA	14	True	ATTAAA	-16	NA	3239166	3259083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
ENSMUST00000101800.7	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
ENSMUST00000101801.8	chr7	+	1191	6	FSM	ENSMUSG00000075701.11	ENSMUST00000101801.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_5	18.3804243694209	451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCTCTGGTTTTTCTT	NA	False	NA	7	True	AGTAAA	-16	NA	65729396	65739153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
ENSMUST00000102476.5	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUST00000102483.5	chr11	-	560	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	8876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
ENSMUST00000102500.5	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76104750_76108303
ENSMUST00000102503.10	chr4	-	1221	8	FSM	ENSMUSG00000028741.14	ENSMUST00000102503.10	1221	8	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_5	119.708489460771	905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTTTTTTGTTGTTT	5696	False	NA	-2	True	AATAAA	-44	NA	139079887	139074745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUST00000102508.10	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	2169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	8	True	NA	NA	NA	138920209	139019129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUST00000102525.11	chr5	+	899	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	846	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	4488	False	NA	38	True	ATTAAA	-22	NA	122529940	122544242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
ENSMUST00000102533.11	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	231.929816970565	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6603	False	NA	15	True	AATAAA	-26	NA	135975262	136002209	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUST00000102536.11	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	16115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	False	NA	-59	True	NA	NA	NA	135780704	135777041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUST00000102541.10	chr4	+	1430	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4562	False	NA	11	True	AATAAA	-19	NA	135691037	135695489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ENSMUST00000102542.10	chr2	-	2734	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485445	114346900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ENSMUST00000102550.10	chr4	-	2025	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTTCATCTCTGAGT	NA	False	NA	7	True	ATTAAA	-30	NA	134262579	134252860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ENSMUST00000102553.11	chr4	-	1265	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCTGATCTTTCCCA	NA	False	NA	NA	False	AATAAA	-25	NA	133695312	133692048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUST00000102561.11	chr4	+	1813	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	1282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	7	True	AGTAAA	-24	NA	132495645	132506063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUST00000102567.4	chr4	-	1675	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132187425_132190175_132190320_132191084
ENSMUST00000102569.10	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
ENSMUST00000102574.10	chr11	-	2168	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTGAATGTCACTGCTC	NA	False	NA	4	True	AATAAA	-21	NA	69906234	69901008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
ENSMUST00000102588.10	chr4	-	1810	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9992	False	NA	NA	False	AAAAAG	-21	NA	129590631	129570147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
ENSMUST00000102591.10	chr4	+	1437	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3176	False	NA	16	True	AATAAA	-16	NA	129494472	129502321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUST00000102593.11	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	1937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6377	False	NA	0	True	AATAAA	-32	NA	129494441	129485752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ENSMUST00000102597.5	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	1511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUST00000102601.10	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214888	69216619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102602.8	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214805	69216619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102604.11	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2869	False	NA	29	True	AATAAA	-19	NA	128887016	128905322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
ENSMUST00000102617.5	chr4	-	1672	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	7076	False	NA	NA	False	AATAAA	-20	NA	126215496	126209839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
ENSMUST00000102625.11	chr3	-	1866	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	2537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352485	108333927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUST00000102629.8	chr3	+	1687	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGCTCTCAGACATAGG	7052	False	NA	68	True	AATAAA	-16	NA	108291174	108295547	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUST00000102645.4	chr2	+	2059	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGGAGTCTTCCCT	3357	False	NA	12	True	AATAAA	-21	NA	84508745	84518559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUST00000102646.4	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84500461_84500588_84500735_84500826
ENSMUST00000102647.11	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	2144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	358	False	NA	-14	True	AATAAA	-19	NA	84501052	84499564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
ENSMUST00000102649.4	chr4	+	2074	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
ENSMUST00000102657.10	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
ENSMUST00000102672.5	chr2	-	2475	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534985	75505856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ENSMUST00000102687.4	chr4	-	1566	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
ENSMUST00000102691.11	chr2	+	2424	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8569	False	NA	NA	False	AATAAA	-16	NA	72306502	72317237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
ENSMUST00000102696.5	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	12000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUST00000102699.8	chr4	+	1654	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664919	116676628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUST00000102704.4	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
ENSMUST00000102705.10	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
ENSMUST00000102727.3	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000102738.4	chr4	+	1629	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	9	True	AATAAA	-15	NA	108704981	108706610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108705000_108706600
ENSMUST00000102744.4	chr4	+	3014	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5272	False	NA	21	True	NA	NA	NA	108436650	108472030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUST00000102746.11	chr7	-	2579	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUST00000102748.11	chr2	+	3594	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTTTTTCCTTTTA	NA	False	NA	27	True	AATAAA	-24	NA	60040230	60079555	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUST00000102758.8	chr11	+	2022	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	0	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5131	False	NA	30	True	AATAAA	-26	NA	52251686	52280224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUST00000102763.5	chr11	+	1832	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	0	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUST00000102769.11	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ENSMUST00000102774.11	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUST00000102782.4	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193609	156194054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_156193600_156194100
ENSMUST00000102793.11	chr4	-	1027	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271543	98243606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
ENSMUST00000102795.4	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-18	NA	44361325	44345397	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUST00000102811.10	chr2	+	729	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5822	False	NA	22	True	AATAAA	-21	NA	32851751	32854055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUST00000102814.5	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	27716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUST00000102840.5	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	2959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
ENSMUST00000102844.4	chr11	-	637	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	31105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497860	29495845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
ENSMUST00000102845.11	chr11	-	791	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	30325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29498109	29495845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUST00000102865.11	chr2	-	1165	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983660	29980955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUST00000102866.10	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	6735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUST00000102898.5	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	3351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUST00000102922.10	chr11	-	1646	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9505	False	NA	2	True	AATAAA	-25	NA	5828292	5822179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ENSMUST00000102928.5	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738529	5750962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000102955.11	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_2	3.41869858279434	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
ENSMUST00000102980.11	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	1795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	-5	True	AATAAA	-16	NA	34294413	34280868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
ENSMUST00000102981.10	chr2	-	2448	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	0	0	0	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900243	5875797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUST00000102997.8	chr4	+	3365	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	20	False	NA	NA	False	NA	NA	NA	21727725	21750546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ENSMUST00000103002.8	chr12	-	2110	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	0	0	0	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467437	21440329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
ENSMUST00000103008.12	chr4	+	2086	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	-5	True	NA	13	True	ATTAAA	-18	NA	6365676	6395655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUST00000103032.11	chr11	+	3551	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	0	0	0	0	multi-exon	TRUE	canonical	3	630	junction_7	88.2626444199357	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
ENSMUST00000103036.5	chr11	+	749	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUST00000103038.8	chr11	-	1143	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	51.0217818409179	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078158	115073657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115077944
ENSMUST00000103040.11	chr11	-	1204	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078216	115073657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
ENSMUST00000103060.10	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ENSMUST00000103061.3	chr11	+	1832	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109317051	109327815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUST00000103075.11	chr11	-	3766	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844882	103712607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ENSMUST00000103094.11	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	26.9250812440743	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUST00000103120.5	chr11	+	2357	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465729	100472554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ENSMUST00000103129.9	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	8134	False	NA	-6	True	AATAAA	-30	NA	156848995	156837184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ENSMUST00000103146.5	chr11	-	1059	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	18502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTGAGTGCTTGAGA	NA	False	NA	-9	True	AATAAA	-17	NA	97673263	97668352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
ENSMUST00000103147.5	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	1210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594224	97604326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUST00000103172.4	chr2	+	1911	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	1585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757239	143785244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUST00000103175.8	chr4	+	1309	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	757	False	NA	34	True	TATAAA	-16	NA	156028287	156042168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000103180.4	chr4	+	1688	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCGGGCGTGGTGGC	NA	False	NA	NA	False	TTTAAA	-9	NA	155151472	155156890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
ENSMUST00000103188.10	chr2	-	1241	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCAGAGGTTAGCGGG	NA	False	NA	-15	True	AATAAA	-14	NA	131001940	130988244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ENSMUST00000103191.11	chr4	+	474	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	12475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	16	True	AATAAA	-15	NA	152410309	152416937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000103195.5	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ENSMUST00000103198.11	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	1240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	31	True	AATAAA	-20	NA	130116349	130121233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUST00000103199.9	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	FALSE	canonical	3	3295	junction_4	264.518850409989	2143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ENSMUST00000103213.10	chr11	-	1783	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	0	0	0	0	multi-exon	TRUE	canonical	3	193	junction_4	34.6180548590215	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8303	False	NA	-6	True	AATAAA	-22	NA	82799237	82791593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUST00000103226.10	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUST00000103242.5	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	886	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_78433623_78434311_78434457_78441353
ENSMUST00000104958.2	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	629	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	1535	False	NA	NA	False	AATAAA	-22	NA	48837017	48836180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_48836200_48837000
ENSMUST00000104998.5	chr2	+	854	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGCTCTGAATTGCCAG	NA	False	NA	6	True	ATTAAA	-16	NA	25145450	25146304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25145400_25146300
ENSMUST00000105230.4	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUST00000105267.8	chr10	-	2800	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUST00000105323.8	chr10	-	1463	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	False	NA	-8	True	AATAAA	-20	NA	81186314	81181881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
ENSMUST00000105324.9	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186260	81181884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
ENSMUST00000105362.8	chr10	+	2081	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	0	0	0	0	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100817	80124242	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUST00000105365.9	chr10	+	1321	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6129	False	NA	NA	False	ATTAAA	-18	NA	80003611	80007489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ENSMUST00000105366.2	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79978441_79979665_79979820_79981256
ENSMUST00000105372.9	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	2498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUST00000105381.5	chr10	+	1240	6	FSM	ENSMUSG00000023175.16	ENSMUST00000105381.5	1240	6	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_4	464.180568313668	5073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79545431	79547803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000105384.5	chr10	+	2329	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUST00000105410.10	chr10	+	2347	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869045	76886265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUST00000105447.11	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	5198	False	NA	-11	True	AATAAA	-12	NA	62322584	62291055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUST00000105455.9	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551041	61574432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
ENSMUST00000105583.9	chr4	+	1434	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	795	False	NA	34	True	TATAAA	-16	NA	156028325	156042168	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000105591.2	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	1160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155916125	155917488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
ENSMUST00000105592.8	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155916528_155916808_155917255_155917347
ENSMUST00000105595.2	chr4	+	874	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789591	155816646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ENSMUST00000105598.2	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUST00000105613.10	chr4	+	3152	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9572	False	NA	38	True	AATAAA	-24	NA	155648156	155675458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUST00000105645.9	chr4	+	977	3	FSM	ENSMUSG00000047613.11	ENSMUST00000105645.9	977	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	388	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACTGTGTTCACA	NA	False	NA	NA	False	AATAAA	-22	NA	154041693	154046375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_154041780_154044987_154045450_154045946
ENSMUST00000105673.8	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
ENSMUST00000105675.8	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	4314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	5729	False	NA	-1	True	AATAAA	-26	NA	150998894	150981589	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
ENSMUST00000105720.8	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
ENSMUST00000105734.10	chr4	-	2729	6	FSM	ENSMUSG00000078495.11	ENSMUST00000105734.10	2729	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	98.3963413953995	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9523	False	NA	NA	False	NA	NA	NA	147894245	147838430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147840693_147842158_147842286_147845677_147845736_147880114_147880182_147891546_147891641_147894124
ENSMUST00000105735.9	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
ENSMUST00000105738.9	chr4	+	4006	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145397254	145431011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
ENSMUST00000105741.2	chr4	+	3044	5	FSM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	215.70972972956	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	5019	False	NA	NA	False	NA	NA	NA	145241453	145265758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_145241589_145247375_145247456_145257381_145257486_145261385_145261513_145263160
ENSMUST00000105742.8	chr4	+	2996	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	894	False	NA	NA	False	NA	NA	NA	145237328	145265758	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUST00000105784.8	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUST00000105855.2	chr4	-	2789	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135300941	135269198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ENSMUST00000105866.3	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238309	134251238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134238481_134248782_134248913_134250264
ENSMUST00000105874.9	chr4	+	3153	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGCCTTGCAGA	2081	False	NA	16	True	AATAAA	-21	NA	134070516	134081795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
ENSMUST00000105907.9	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005103	132993355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ENSMUST00000105909.4	chr7	-	2462	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ENSMUST00000105964.2	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
ENSMUST00000105994.4	chr4	+	1584	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253924	130283819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ENSMUST00000106000.10	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	False	NA	8	True	NA	NA	NA	141047305	141051386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000106003.2	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	2515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000106004.8	chr7	+	421	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2459	False	NA	27	True	AATAAA	-20	NA	141027624	141031263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000106040.8	chr7	+	560	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106040.8	560	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	567.5	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547940	140549738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140547965_140548152_140548352_140549401
ENSMUST00000106048.10	chr7	-	1416	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461782	140443582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
ENSMUST00000106057.8	chr3	+	2737	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTCTGACTGAATGTT	NA	False	NA	3	True	AATAAA	-11	NA	157240024	157254013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ENSMUST00000106058.8	chr3	+	2924	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	0	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTGTCACTGT	NA	False	NA	37	True	AATAAA	-45	NA	157239796	157254047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUST00000106091.9	chr4	-	1623	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_1	0	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_127220565_127222868
ENSMUST00000106145.10	chr7	-	1644	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310798	133288084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
ENSMUST00000106148.10	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	6916	False	NA	-4	True	AATAAA	-37	NA	120618069	120616224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000106154.8	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
ENSMUST00000106158.9	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000106192.9	chr3	+	2425	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCAAGTGTCTCGCTATA	NA	False	NA	NA	False	AATAAA	-43	NA	144824349	144859676	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUST00000106197.10	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ENSMUST00000106206.8	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_123606720_123609656_123609875_123611815
ENSMUST00000106215.11	chr11	-	1827	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	7684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTGTTTTTCTGGTTTG	NA	False	NA	-22	True	AATAAA	-17	NA	120238917	120236516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
ENSMUST00000106255.8	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ENSMUST00000106257.10	chr4	-	2768	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779849	122752839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
ENSMUST00000106291.10	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	False	NA	73	True	AATAAA	-13	NA	135143994	135171819	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000106292.8	chr7	+	2175	13	FSM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	75.4609446446748	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTCCTTTGTGCC	NA	False	NA	9	True	TATAAA	-14	NA	127069542	127075931	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127069596_127070156_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUST00000106300.2	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	4	True	NA	-4	True	ATTAAA	-17	NA	127021206	127018138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127018814_127020576_127020691_127020980
ENSMUST00000106314.8	chr7	-	1486	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGCCTTCCCCCA	NA	False	NA	-22	True	AATAAA	-3	NA	126817670	126813633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
ENSMUST00000106318.8	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	163.771144144263	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9582	False	NA	-3	True	AATAAA	-19	NA	119177743	119157206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106321.9	chr4	-	1288	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9644	False	NA	-2	True	NA	NA	NA	119177681	119164356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106343.3	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUST00000106348.8	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	5518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	126399619	126394406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
ENSMUST00000106349.2	chr11	+	2932	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTCTTTGGCAAGACC	NA	False	NA	102	True	AATAAA	-27	NA	117223170	117253150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUST00000106369.2	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1148	False	NA	22	True	ATTAAA	-17	NA	126295144	126295869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126295272_126295354
ENSMUST00000106378.8	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
ENSMUST00000106407.9	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
ENSMUST00000106425.4	chr11	-	2330	15	FSM	ENSMUSG00000020780.16	ENSMUST00000106425.4	2330	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	170.438824383246	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9899	False	NA	-2	True	ATTAAA	-17	NA	116164961	116135991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116162738_116162806_116164751
ENSMUST00000106439.2	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ENSMUST00000106448.9	chr4	+	1555	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	0	0	0	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876598	116944049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
ENSMUST00000106479.8	chr4	+	2118	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAGCAACAGTACAA	NA	False	NA	NA	False	AATAAA	-19	NA	116364745	116395432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ENSMUST00000106513.10	chr4	+	2552	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUST00000106537.8	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	2923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
ENSMUST00000106553.8	chr7	+	3018	30	FSM	ENSMUSG00000030982.20	ENSMUST00000106553.8	3018	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	118.758810925395	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCAGTGTCTCGGTGTGTG	NA	False	NA	10	True	ATTAAA	-21	NA	118339969	118440712	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ENSMUST00000106567.2	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	False	NA	-12	True	ATTAAA	-19	NA	110158314	110155864	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_110155900_110158300
ENSMUST00000106599.8	chr11	+	457	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	7992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559434	114563157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000106602.10	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	13004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559349	114563157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000106607.2	chr7	+	1153	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692575	115704442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_115692623_115702445_115702556_115703446
ENSMUST00000106609.8	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	36.8117839559091	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6596	False	NA	6	True	AATAAA	-18	NA	108561228	108586156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUST00000106633.10	chr11	-	2688	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7766	False	NA	-2	True	AATAAA	-19	NA	113456585	113135678	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUST00000106749.8	chr4	+	607	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCATTTTTTTTATATAA	NA	False	NA	8	True	ATTAAA	-19	NA	107111099	107137135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUST00000106757.8	chr11	-	3098	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUST00000106981.8	chr7	-	960	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	8098	False	NA	0	True	AATAAA	-31	NA	101513352	101507537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
ENSMUST00000107037.8	chr11	+	1221	3	FSM	ENSMUSG00000043372.13	ENSMUST00000107037.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTGGCTACAATTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	103024139	103030017	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_103024249_103024860_103024968_103029012
ENSMUST00000107060.8	chr11	-	3339	28	FSM	ENSMUSG00000020929.15	ENSMUST00000107060.8	3339	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	289.083827865911	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8448	False	NA	-5	True	TATAAA	-22	NA	102771811	102729298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762009_102768435_102768545_102771720
ENSMUST00000107077.4	chr3	+	2695	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	3321	False	NA	16	True	AATAAA	-26	NA	96604432	96613289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUST00000107098.8	chr11	-	1606	12	FSM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	1380.93231173247	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7743	False	NA	NA	False	NA	NA	NA	102298315	102293810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296629_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000107156.9	chr11	-	2015	4	FSM	ENSMUSG00000020922.12	ENSMUST00000107156.9	2015	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	445.4737802485	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6423	False	NA	-1	True	AATAAA	-23	NA	102076055	102053322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102075948
ENSMUST00000107187.9	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	26.9118359384908	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUST00000107237.8	chr3	-	1332	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	2417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949925	94940004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000107249.8	chr11	+	732	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	14935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2389	False	NA	62	True	ATTAAA	-18	NA	101333271	101336355	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000107302.8	chr11	+	1826	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000107308.4	chr11	+	2386	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUST00000107384.10	chr7	-	1745	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	0	0	0	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765140	79744593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUST00000107389.8	chr11	-	4426	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	0	0	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418826	100367178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUST00000107406.2	chr11	-	1062	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATCATTTGTCCTGT	NA	False	NA	-6	True	AATAAA	-23	NA	100156804	100153707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
ENSMUST00000107409.5	chr7	-	2008	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	0	0	0	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798801	78783515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ENSMUST00000107417.9	chr3	+	3079	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325920	89337322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUST00000107421.8	chr7	+	2007	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGGTCCTTTCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	78545681	78558129	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ENSMUST00000107422.2	chr3	-	766	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTATTGGAAATTTTGC	NA	False	NA	23	True	NA	NA	NA	89325324	89322863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89323271_89323580_89323709_89325093
ENSMUST00000107423.2	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
ENSMUST00000107491.11	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUST00000107526.8	chr4	-	1438	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTTTGTAAGGATCCT	30	True	NA	-6	True	ATTAAA	-18	NA	59783808	59771296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ENSMUST00000107553.8	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
ENSMUST00000107583.3	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUST00000107684.2	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	5650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ENSMUST00000107686.8	chr11	-	691	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	3463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGCCTGTC	3568	False	NA	-6	True	NA	NA	NA	95966407	95963812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
ENSMUST00000107700.4	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3277	False	NA	21	True	AATAAA	-43	NA	95925790	95938256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
ENSMUST00000107722.8	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304923	95384232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107723.9	chr7	-	1898	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCCTCTGAGCTTCTT	8634	False	NA	-4	True	AATAAA	-31	NA	45480213	45474650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
ENSMUST00000107724.9	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304905	95384232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107733.10	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUST00000107734.10	chr11	-	3560	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUST00000107752.12	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204316	45216745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUST00000107758.10	chr7	+	1597	10	FSM	ENSMUSG00000023467.19	ENSMUST00000107758.10	1597	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.8989880024427	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	6743	False	NA	17	True	AATAAA	-18	NA	45135787	45171806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUST00000107771.12	chr7	-	1834	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	0	0	0	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9182	False	NA	-4	True	TATAAA	-15	NA	45084047	45071321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUST00000107808.3	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_45105645_45106838_45106889_45107912
ENSMUST00000107810.3	chr4	-	639	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	0	0	0	0	multi-exon	FALSE	canonical	3	2176	junction_1	0	1369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTTTGTGTTTTTAAT	-16	True	NA	NA	False	AATAAA	-18	NA	45108114	45105207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_45105645_45107912
ENSMUST00000107821.9	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUST00000107843.11	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	3995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ENSMUST00000107845.4	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8	True	NA	21	True	AATAAA	-21	NA	44012685	44032846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000107849.10	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
ENSMUST00000107876.8	chr7	+	1770	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUST00000107924.3	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUST00000107992.2	chr7	-	3148	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342142	42309528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
ENSMUST00000108037.9	chr4	-	590	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	28	False	NA	5	True	AATAAA	-28	NA	41774142	41769466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
ENSMUST00000108108.3	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40270848_40272809_40272855_40279157
ENSMUST00000108116.10	chr7	-	2071	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	-5	True	AATAAA	-15	NA	30672852	30657201	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUST00000108127.4	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35225880	35191286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
ENSMUST00000108134.8	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	76	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	-13	True	NA	NA	False	AATAAA	-6	NA	34778364	34768663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34769148_34771257_34771415_34778223
ENSMUST00000108141.2	chr7	-	1526	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	0	0	0	0	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTGGACTTAGAAACT	3784	False	NA	-12	True	AATAAA	-18	NA	30349569	30340423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUST00000108142.8	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUST00000108156.9	chr3	-	2687	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667626	36627290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
ENSMUST00000108196.8	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
ENSMUST00000108200.2	chr7	+	3604	3	FSM	ENSMUSG00000049421.14	ENSMUST00000108200.2	3604	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29794609	29807039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29794637_29798952_29799148_29803657
ENSMUST00000108238.8	chr7	+	1126	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000108240.3	chr4	+	1406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727754	21747962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUST00000108259.8	chr3	+	1916	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	143	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931711_30949858
ENSMUST00000108275.2	chr11	+	582	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUST00000108278.9	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ENSMUST00000108279.9	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
ENSMUST00000108283.8	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
ENSMUST00000108292.9	chr7	+	657	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1815	False	NA	NA	False	AATAAA	-26	NA	28136871	28145971	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUST00000108322.9	chr11	+	1685	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6374	False	NA	21	True	ATTAAA	-15	NA	78079604	78083014	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUST00000108324.4	chr4	+	2908	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	309	False	NA	NA	False	NA	NA	NA	11191729	11204682	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUST00000108358.8	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
ENSMUST00000108365.4	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
ENSMUST00000108382.2	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	False	NA	NA	False	NA	NA	NA	26865838	26858412	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ENSMUST00000108386.8	chr4	+	524	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938887	3943523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000108429.8	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	26778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUST00000108450.5	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUST00000108453.2	chr7	+	1530	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	727	False	NA	26	True	AATAAA	-21	NA	19311211	19314581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_19311554_19311741_19311886_19313537
ENSMUST00000108496.9	chr7	+	2764	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515264	16532199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUST00000108530.2	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108531.8	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108539.8	chr7	+	794	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	13981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656216	12660612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUST00000108568.10	chr11	+	1777	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323462	70331500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
ENSMUST00000108575.9	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	223.35671519393	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128679	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
ENSMUST00000108578.9	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000108579.8	chr11	-	667	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128730	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
ENSMUST00000108583.9	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUST00000108594.8	chr11	-	1454	9	FSM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	188.652085530481	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	8900	False	NA	0	True	AATAAA	-30	NA	69872078	69859049	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039_69871389_69872032
ENSMUST00000108610.8	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
ENSMUST00000108613.10	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	8775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUST00000108623.8	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	2878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
ENSMUST00000108625.8	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	5459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1323	False	NA	-37	True	NA	NA	NA	3707050	3709856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000108627.4	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2933	False	NA	-2	True	AATAAA	-8	NA	3697521	3704003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUST00000108641.10	chr7	-	1166	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632928	3623322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUST00000108657.4	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUST00000108666.8	chr11	+	1831	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUST00000108675.2	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	29.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	67857305	67865417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_67857344_67860597_67860698_67864058
ENSMUST00000108713.8	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
ENSMUST00000108721.9	chr11	-	1813	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307877	60291451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUST00000108787.9	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ENSMUST00000108807.9	chr2	+	2072	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007197	181022575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ENSMUST00000108840.4	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
ENSMUST00000108841.2	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUST00000108857.2	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	1595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
ENSMUST00000108858.8	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3858	False	NA	-2	True	AATAAA	-22	NA	55310724	55285325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ENSMUST00000108883.10	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000108895.8	chr11	+	1829	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGCTCATTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	54413715	54525835	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
ENSMUST00000108901.8	chr2	+	1444	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	63.2077702677623	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179713585	179727695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000108923.2	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720269	177710282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUST00000108934.9	chr2	-	561	3	FSM	ENSMUSG00000074529.11	ENSMUST00000108934.9	561	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTACCCGGTTCATTCTG	NA	False	NA	NA	False	NA	NA	NA	177567397	177545132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177545521_177563481_177563609_177567351
ENSMUST00000108955.2	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
ENSMUST00000108988.9	chr8	+	3274	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8827	False	NA	39	True	AATAAA	-21	NA	120637552	120684299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUST00000109011.8	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661011	175671449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
ENSMUST00000109021.4	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_53319978_53321362_53321530_53321614
ENSMUST00000109075.8	chr2	+	2279	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257596	174269295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUST00000109140.10	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172212455	172198109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUST00000109161.3	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUST00000109203.9	chr13	+	1525	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565136	119593927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUST00000109238.9	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUST00000109262.8	chr2	-	2515	11	FSM	ENSMUSG00000039671.19	ENSMUST00000109262.8	2515	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	162.152520794467	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165738870	165669101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165738772
ENSMUST00000109278.8	chr11	-	1965	8	FSM	ENSMUSG00000041278.11	ENSMUST00000109278.8	1965	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	255.299184231732	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTTTCTGTACAACTTG	NA	False	NA	NA	False	NA	NA	NA	43638835	43620338	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUST00000109298.8	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
ENSMUST00000109300.9	chr2	-	2008	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
ENSMUST00000109333.8	chr13	-	701	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881167	100872462	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUST00000109344.9	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164404725_164407711_164407859_164410254
ENSMUST00000109345.9	chr2	+	558	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
ENSMUST00000109354.10	chr11	-	1157	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	5257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000109384.10	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
ENSMUST00000109468.3	chr2	+	3856	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	23	True	AATAAA	-21	NA	160487807	160564684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
ENSMUST00000109521.4	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	2175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	95584077	95590870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUST00000109566.9	chr2	+	1595	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156562964	156605044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUST00000109587.9	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUST00000109596.8	chr11	-	2171	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3055	False	NA	-8	True	AATAAA	-17	NA	20199418	20188385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
ENSMUST00000109600.2	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155984163_155985286_155985379_155985939
ENSMUST00000109605.5	chr15	+	1725	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	2318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUST00000109607.10	chr2	-	3441	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953859	155913764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
ENSMUST00000109609.9	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ENSMUST00000109636.11	chr2	-	2633	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTTACTGTGTG	NA	False	NA	-58	True	NA	NA	NA	155772230	155688840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUST00000109682.9	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
ENSMUST00000109699.11	chr13	+	2834	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGGCATGAGACTTGGA	NA	False	NA	31	True	AATAAA	-19	NA	69760134	69782453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
ENSMUST00000109737.9	chr11	-	1633	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	0	0	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTGGTCCTGA	NA	False	NA	-5	True	AATAAA	-24	NA	6394443	6377228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ENSMUST00000109761.9	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	TRUE	canonical	3	614	junction_3	246.139156525328	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUST00000109767.9	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUST00000109768.9	chr8	+	2044	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415892	85426415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUST00000109782.2	chr2	-	1343	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474660	153460753	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
ENSMUST00000109810.2	chr8	+	1794	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84442176	84449977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000109820.5	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152672586	152622591	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152624203_152671346_152672023_152672305
ENSMUST00000109845.8	chr11	+	2001	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	40.5239126936183	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCTCAGCCCATCCAT	NA	False	NA	-29	True	NA	NA	NA	5738487	5750629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000109847.9	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUST00000109848.10	chr12	-	2831	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860100	108825955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUST00000109861.8	chr2	+	2590	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841784	151851142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUST00000109901.9	chr12	+	4380	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGTAGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	105750952	105805066	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUST00000109905.5	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	823	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55740981	55745510	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
ENSMUST00000109922.2	chr2	+	3018	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAGAAAAAAATCCACA	NA	False	NA	NA	False	NA	NA	NA	150099436	150112220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
ENSMUST00000109926.8	chr2	+	1728	4	FSM	ENSMUSG00000079009.9	ENSMUST00000109926.8	1728	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	16.0485374896143	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATAGACAGTCATGGTT	NA	False	NA	NA	False	NA	NA	NA	150023674	150035199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775
ENSMUST00000109950.5	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
ENSMUST00000109961.8	chr2	+	1116	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	28	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514520	148517947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_148514756_148516383_148516519_148517201
ENSMUST00000109989.10	chr11	-	1949	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
ENSMUST00000109991.8	chr11	-	1943	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109991.8	1943	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882078	3867191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3882012
ENSMUST00000109997.10	chr8	+	2713	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704914	72724177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
ENSMUST00000110000.8	chr2	+	1142	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUST00000110027.2	chr2	+	2359	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUST00000110030.10	chr2	-	2512	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112826	144092042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUST00000110043.8	chr11	+	3702	5	FSM	ENSMUSG00000020453.18	ENSMUST00000110043.8	3702	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	207.771960331513	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6006	False	NA	14	True	ATTAAA	-16	NA	3239992	3259083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256222_3256361_3257647
ENSMUST00000110053.9	chr8	+	1064	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110053.9	1064	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819491	71822373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000110054.8	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819585	71822376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000110071.3	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUST00000110079.9	chr2	-	2258	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908725	139675399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUST00000110089.9	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733309	136715699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUST00000110143.8	chr8	+	1312	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_6	45.467021015237	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ENSMUST00000110163.8	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4908	False	NA	-2	True	TATAAA	-20	NA	132089689	132081411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ENSMUST00000110231.2	chr15	-	1499	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953876	54939497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUST00000110262.3	chr2	-	3015	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAGTCTTACTGCAT	NA	False	NA	-5	True	AATAAA	-25	NA	130471947	130455759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130458663_130471835
ENSMUST00000110273.9	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ENSMUST00000110329.8	chr15	-	4217	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519507	38488481	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
ENSMUST00000110340.9	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	998	False	NA	-46	True	AATAAA	-19	NA	81531884	81405799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
ENSMUST00000110351.8	chr12	+	1498	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	4345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110354.8	chr12	+	1489	9	FSM	ENSMUSG00000021134.18	ENSMUST00000110354.8	1489	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	756.029885322002	3703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992293	80997277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992355_80992375_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110356.3	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	4037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992358	80997277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000110382.9	chr13	-	963	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	0	0	0	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	1860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945906	24935827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
ENSMUST00000110387.4	chr2	-	2695	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	0	0	0	0	multi-exon	TRUE	canonical	3	394	junction_9	30.9044738701424	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCAGTATTAGCGTCACA	NA	False	NA	13	True	AATAAA	-34	NA	126975874	126945728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
ENSMUST00000110395.11	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ENSMUST00000110424.9	chr2	-	2613	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCATGCAGACTCATGT	NA	False	NA	-10	True	ATTAAA	-14	NA	126517422	126470832	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUST00000110437.4	chr2	+	1276	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	13.6381816969859	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCCTTACCTTTCGACT	9679	False	NA	28	True	ATTAAA	-26	NA	125996460	126007199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUST00000110463.8	chr2	-	3392	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125701059	125672223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUST00000110512.4	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUST00000110551.4	chr2	+	2352	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTATGTGGTTTGTGCCT	NA	False	NA	16	True	AATAAA	-19	NA	122065229	122095821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUST00000110609.8	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110609.8	2300	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	868.905733283728	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330485	26306913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330396
ENSMUST00000110610.8	chr8	-	2337	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	0	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	3102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26337722	26306903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUST00000110620.2	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69229940_69230438
ENSMUST00000110621.3	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215587	69225783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
ENSMUST00000110690.9	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055864	4184826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUST00000110711.9	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398151	120431736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUST00000110731.4	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	143389592	143407656	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUST00000110801.8	chr2	-	1478	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110801.8	1478	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493301	119485926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
ENSMUST00000110802.8	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
ENSMUST00000110813.5	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ENSMUST00000110829.7	chr5	-	2547	17	FSM	ENSMUSG00000029554.16	ENSMUST00000110829.7	2547	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.7873090808766	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307305	139994443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ENSMUST00000110883.9	chr5	+	3714	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186397	139235550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUST00000110893.10	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000110951.8	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	2807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUST00000110960.9	chr5	+	2204	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115198	138132527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
ENSMUST00000110961.9	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115177	138132527	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUST00000111035.2	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	1732	False	NA	-32	True	AATAAA	-20	NA	137500687	137499699	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137499700_137500700
ENSMUST00000111080.8	chr5	-	1353	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074989	137063846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ENSMUST00000111094.8	chr5	+	948	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4051	False	NA	18	True	AATAAA	-19	NA	136982128	136995086	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000111147.8	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUST00000111187.10	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135197453_135199940_135200017_135202024
ENSMUST00000111219.8	chr5	+	1790	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3417	False	NA	NA	False	NA	NA	NA	134961226	134970577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUST00000111230.8	chr1	+	1586	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327613	172334947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUST00000111264.8	chr1	-	2349	9	FSM	ENSMUSG00000026556.16	ENSMUST00000111264.8	2349	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.4520232634623	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTTCCTCAGTTTTT	NA	False	NA	30	True	NA	NA	NA	171854862	171831995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171836365_171836486_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ENSMUST00000111295.8	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
ENSMUST00000111299.8	chr1	+	2322	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111299.8	2322	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	95.9804146688271	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCCCACTTTTCTGA	1446	False	NA	NA	False	AATAAA	-11	NA	171156966	171169893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171157095_171158801_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUST00000111309.8	chr2	-	771	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCCCCTTCCCAGTT	NA	False	NA	NA	False	AATAAA	-42	NA	91762033	91760149	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
ENSMUST00000111318.8	chr1	-	1545	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	1980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUST00000111325.5	chr14	-	1255	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137715	56134739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUST00000111432.10	chr1	+	2163	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ENSMUST00000111435.9	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUST00000111468.10	chr2	+	1066	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	119	False	NA	48	True	NA	NA	NA	90677521	90695732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000111490.2	chr1	+	1419	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_163822547_163823482
ENSMUST00000111587.10	chr5	-	1576	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8922	False	NA	-12	True	AATAAA	-25	NA	123662239	123649767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000111610.12	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	1875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000111620.10	chr1	+	1910	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTTATTTATTCTGTT	NA	False	NA	20	True	AATAAA	-26	NA	160898336	160913908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
ENSMUST00000111663.9	chr6	+	2880	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
ENSMUST00000111664.8	chr2	-	1926	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5229	False	NA	-7	True	AATAAA	-17	NA	84508462	84501659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
ENSMUST00000111721.2	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156911	145162265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_145156971_145160909_145160998_145161076
ENSMUST00000111726.10	chr6	+	1374	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111726.10	1374	3	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_1	45.5	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156881	145162265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_145156979_145160909_145160998_145161076
ENSMUST00000111742.8	chr6	-	2556	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8485	False	NA	-24	True	AATAAA	-16	NA	145021910	144944883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUST00000111754.9	chr1	+	2491	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	87	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911471	155929275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_155911667_155916820_155916881_155927039
ENSMUST00000111957.10	chr1	+	580	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615352	143622514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
ENSMUST00000111960.2	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ENSMUST00000111961.8	chr2	+	1734	10	FSM	ENSMUSG00000059005.14	ENSMUST00000111961.8	1734	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3663.85558909979	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUST00000111964.8	chr2	+	1654	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	1052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7475	False	NA	NA	False	NA	NA	NA	75489604	75496183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUST00000111994.10	chr14	+	3343	10	FSM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	198.662813783171	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31887747	31901204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_31887780_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUST00000111996.8	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	2451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ENSMUST00000112028.10	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058224	44023382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ENSMUST00000112047.10	chr19	+	1233	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGTCTCAGGTTCTTTC	9274	False	NA	16	True	AATAAA	-19	NA	43741536	43757077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUST00000112050.2	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
ENSMUST00000112059.10	chr9	+	1910	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTCTACTTCTTGAAC	NA	False	NA	71	True	NA	NA	NA	108867632	108886845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUST00000112090.2	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115436893_115438571
ENSMUST00000112138.8	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042101	71093635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112139.8	chr2	+	2483	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112139.8	2483	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	151.295501879233	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	15	True	AATAAA	-17	NA	71042084	71093638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ENSMUST00000112144.9	chr2	+	2565	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112144.9	2565	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	241.288883414706	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATTTTCACTTTTACT	NA	False	NA	18	True	AATAAA	-20	NA	71042315	71093641	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112151.2	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_128335157_128336068_128336318_128339801
ENSMUST00000112160.4	chr5	-	1333	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	719	False	NA	0	True	ATTAAA	-23	NA	114952037	114946256	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114947393_114951840
ENSMUST00000112186.9	chr2	-	2347	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
ENSMUST00000112194.2	chrX	+	1418	5	FSM	ENSMUSG00000079317.11	ENSMUST00000112194.2	1418	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	111.246067346221	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165228298	165236136	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_165228370_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ENSMUST00000112205.2	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491933	70519704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
ENSMUST00000112210.11	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUST00000112221.8	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5265	False	NA	-5	True	AATAAA	-21	NA	126916550	126900377	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUST00000112257.10	chrX	+	3212	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202782	163216907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUST00000112279.2	chr5	-	899	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	7978	False	NA	-11	True	AATAAA	-13	NA	114266279	114261995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
ENSMUST00000112294.9	chrX	+	3199	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692140	162712542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
ENSMUST00000112315.2	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	False	NA	-7	True	AATAAA	-16	NA	161612450	161571913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ENSMUST00000112320.8	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
ENSMUST00000112324.2	chr5	-	1102	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428453	113421817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ENSMUST00000112326.8	chrX	+	1430	10	FSM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	178.323675750959	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	161543457	161558891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731
ENSMUST00000112349.9	chr17	+	1728	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112349.9	1728	14	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_11	233.064406873892	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	12	True	AATAAA	-17	NA	84013591	84100304	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096346_84096472_84099081_84099231_84099970
ENSMUST00000112384.10	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	3	5102	junction_4	3158.6347030798	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24540748	24545500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
ENSMUST00000112417.9	chr6	+	1487	8	FSM	ENSMUSG00000030330.16	ENSMUST00000112417.9	1487	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.5119036099053	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7132	False	NA	7	True	AATAAA	-17	NA	125016823	125026228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024864_125024904_125025138_125025201_125025330
ENSMUST00000112439.9	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942501	124935375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUST00000112464.8	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	TRUE	canonical	3	339	junction_9	109.675027103931	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ENSMUST00000112482.2	chr5	+	747	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434206	110439101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
ENSMUST00000112484.10	chr6	-	2219	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
ENSMUST00000112495.8	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423420	61484515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUST00000112505.9	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000112507.4	chr17	-	2817	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	75858941	75844080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
ENSMUST00000112519.9	chr5	+	3159	18	FSM	ENSMUSG00000014668.16	ENSMUST00000112519.9	3159	18	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	36.3883322871989	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTGTACTCCTGTG	NA	False	NA	21	True	AATAAA	-21	NA	110283714	110319837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUST00000112540.8	chr5	+	2081	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTCATGGTATCTTT	8370	False	NA	22	True	NA	NA	NA	110144386	110158277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
ENSMUST00000112570.2	chr1	+	4511	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTGTGTGAACTATT	NA	False	NA	27	True	ATTAAA	-21	NA	127701900	127733669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
ENSMUST00000112580.8	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000112581.8	chr6	+	1995	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1913.25775837967	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_122684476_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000112598.9	chr14	+	802	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAATTCATATCCAA	NA	False	NA	-38	True	AATACA	-8	NA	4199069	4200696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4199418_4199652_4199790_4200379
ENSMUST00000112600.9	chr6	-	3127	14	FSM	ENSMUSG00000040669.15	ENSMUST00000112600.9	3127	14	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_13	317.929693392782	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCACACCTACCCTAATCC	8173	False	NA	-12	True	AATAAA	-13	NA	122317520	122295262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122317503
ENSMUST00000112699.9	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	False	NA	51	True	TTTAAA	-5	NA	149597341	149589365	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
ENSMUST00000112700.8	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596703	149589416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ENSMUST00000112747.2	chr5	+	1507	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	3900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104584057	104588909	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112748.8	chr5	+	1456	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	3907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGTCTGGTGGTGTCA	NA	False	NA	28	True	AATAAA	-15	NA	104582986	104588913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112844.10	chr1	+	2046	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697896	97720694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUST00000112862.7	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUST00000112890.3	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_93728633_93729419
ENSMUST00000112914.8	chrX	+	2484	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011172	141022688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUST00000112916.9	chrX	+	2532	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUST00000112978.2	chrX	-	1390	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857477	139849177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUST00000113039.9	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000113092.9	chr6	-	1269	9	FSM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	15.858258889298	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACCAAGGACTGTG	NA	False	NA	-8	True	AATAAA	-42	NA	113396301	113392279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUST00000113097.8	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644439	135633690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
ENSMUST00000113110.5	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88571039_88597540_88597803_88601711
ENSMUST00000113112.2	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	2804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135171151_135171558_135171632_135172057
ENSMUST00000113113.2	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_1	0	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	135171523	135172669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135171632_135172011
ENSMUST00000113115.2	chrX	+	888	2	FSM	ENSMUSG00000042712.11	ENSMUST00000113115.2	888	2	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_1	0	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135146431	135147888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135146516_135147084
ENSMUST00000113120.2	chrX	-	718	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116192	135114721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_135115333_135116085
ENSMUST00000113127.7	chr5	-	4182	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	0	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231578	92200022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUST00000113198.8	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
ENSMUST00000113199.8	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
ENSMUST00000113203.2	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501973	133507809	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133502083_133505603
ENSMUST00000113211.8	chrX	+	483	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	12227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	75	True	ATTAAA	-16	NA	133486402	133488805	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUST00000113231.4	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	1460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113233.8	chr1	+	1807	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141635	87156578	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113235.8	chr1	+	3473	8	FSM	ENSMUSG00000026254.18	ENSMUST00000113235.8	3473	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	1022.13094732005	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
ENSMUST00000113239.10	chr6	-	2084	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777035	106757161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
ENSMUST00000113248.4	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUST00000113278.9	chr2	+	2085	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113278.9	2085	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	112.542831352729	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32511769	32525070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32511890_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUST00000113286.8	chrX	+	2717	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132959963	132976612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
ENSMUST00000113301.2	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47997988_47998112_47998214_47998823
ENSMUST00000113306.4	chr1	+	2582	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTGCTTCCTTGGTCTT	NA	False	NA	36	True	AATAAA	-27	NA	86230955	86235027	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_86231277_86232766
ENSMUST00000113397.9	chr2	-	580	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178017	32168827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
ENSMUST00000113429.8	chr17	+	998	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113429.8	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	389.469903273097	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	27	True	AATAAA	-16	NA	46957175	46961057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959595_46959696_46959960_46960035_46960809
ENSMUST00000113471.3	chr19	+	535	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUST00000113482.8	chr2	+	3268	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	0	0	0	0	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	493	False	NA	36	True	AATAAA	-37	NA	31462662	31507538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUST00000113485.9	chr19	+	3221	12	FSM	ENSMUSG00000024949.18	ENSMUST00000113485.9	3221	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	431.203485933256	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	834	False	NA	21	True	AATAAA	-21	NA	6413951	6427232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
ENSMUST00000113487.8	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
ENSMUST00000113489.8	chr19	+	2863	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113489.8	2863	13	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	368.940026366828	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTTCTTTTCTTTTAAA	631	False	NA	22	True	AATAAA	-22	NA	6413748	6427233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6426325
ENSMUST00000113535.9	chr5	+	1969	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696141	74756806	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUST00000113550.6	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUST00000113584.8	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412586	75419817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000113600.10	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUST00000113605.10	chr1	-	1571	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293589	75285208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
ENSMUST00000113619.8	chr6	-	1661	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	0	0	0	0	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	3622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828062	87820063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
ENSMUST00000113621.10	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249344	30234822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000113627.4	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	1053	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
ENSMUST00000113645.8	chr2	+	1325	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUST00000113669.9	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	-11	True	ACTAAA	-17	NA	37269374	37265247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
ENSMUST00000113695.8	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	False	NA	-2	True	AATAAA	-24	NA	66951084	66929873	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113696.8	chr9	-	1714	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951189	66929871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113721.8	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640536	74632911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000113732.2	chr1	+	1679	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	48.4072856719156	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTACCTACAAGATCTA	1216	False	NA	13	True	AATAAA	-14	NA	74627532	74631348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74627764_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUST00000113733.10	chr1	+	1488	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1131	False	NA	4	True	CATAAA	-16	NA	74627447	74631283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUST00000113755.8	chr2	+	2305	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUST00000113756.8	chr2	+	3826	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113756.8	3826	21	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	191.01803579767	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7203	False	NA	13	True	AATAAA	-13	NA	29779806	29821757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUST00000113811.8	chrX	+	930	8	FSM	ENSMUSG00000047694.13	ENSMUST00000113811.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.4662255638889	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATATTTGCAAGGCT	NA	False	NA	26	True	ATTAAA	-36	NA	97979921	97988737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_97979952_97981791_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUST00000113820.9	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	TRUE	canonical	3	1389	junction_1	306.215936881149	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7828	False	NA	14	True	AATAAA	-19	NA	74275655	74307368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000113888.3	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUST00000113904.9	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	21	True	ATTAAA	-17	NA	52940395	52982007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUST00000113906.9	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ENSMUST00000113938.5	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_2	17.5	550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7383	False	NA	NA	False	ATTAAA	-19	NA	83086020	83086920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83086185_83086294_83086408_83086502
ENSMUST00000113952.10	chr2	+	2890	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405168	27426547	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUST00000113980.4	chr6	+	1945	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUST00000114011.11	chr17	+	840	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	-6	True	NA	26	True	AATAAA	-20	NA	35200855	35204867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000114016.10	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_78668390_78671446_78671527_78679096
ENSMUST00000114023.3	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9102	False	NA	NA	False	AATAAA	-24	NA	91525589	91491225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000114049.2	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72934636_72934895
ENSMUST00000114050.8	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	4346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72934636_72934895_72935008_72935319
ENSMUST00000114070.10	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557904	74567652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
ENSMUST00000114079.9	chr1	-	2030	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656401	64645631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUST00000114093.2	chr2	+	1638	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	653	False	NA	NA	False	NA	NA	NA	26279359	26283953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
ENSMUST00000114143.10	chrX	-	1899	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436878	73428324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
ENSMUST00000114151.10	chr6	+	2518	13	FSM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	563.839288322085	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808393	71852241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUST00000114152.2	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	4536	False	NA	-19	True	AATAAA	-29	NA	73397181	73395767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_73396105_73396450_73396609_73396930
ENSMUST00000114160.2	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	199	False	NA	NA	False	AATAAA	-33	NA	73356638	73363755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUST00000114184.8	chr16	+	2202	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84631812	84658203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ENSMUST00000114195.8	chr16	+	4370	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	0	0	0	0	multi-exon	FALSE	canonical	3	3263	junction_7	414.866630361679	2626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	17	True	AATAAA	-20	NA	84571010	84622816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
ENSMUST00000114218.2	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
ENSMUST00000114220.9	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ENSMUST00000114226.8	chr6	+	1155	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114226.8	1155	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	135.972423674803	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCCTTTGATGGGGTCT	NA	False	NA	17	True	AATAAA	-33	NA	66873417	66995273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
ENSMUST00000114228.8	chr6	+	748	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	0	0	0	0	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873406	66994913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUST00000114276.3	chr9	+	2024	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	960	False	NA	18	True	ATTAAA	-19	NA	55949140	55966361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ENSMUST00000114294.8	chr6	+	2178	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617548	58669496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUST00000114329.8	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794536	34790992	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ENSMUST00000114331.10	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794556	34790989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ENSMUST00000114348.8	chr1	-	1033	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484593	58470152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUST00000114349.9	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ENSMUST00000114371.5	chr16	-	1150	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_5	24.152805731247	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57427209	57122362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
ENSMUST00000114379.8	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
ENSMUST00000114387.8	chrX	-	979	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965494	72960492	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114389.10	chrX	-	1031	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114389.10	1031	8	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_1	110.126457923125	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGGGTATGCTTTTT	NA	False	NA	-3	True	AATAAA	-36	NA	72965530	72960480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114410.10	chr1	-	2512	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTGACTACTTACT	NA	False	NA	1	True	AATAAA	-25	NA	58009287	57994406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
ENSMUST00000114426.10	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUST00000114437.9	chr9	+	3430	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAATTTCACAGTTTC	-13	True	NA	NA	False	NA	NA	NA	50768236	50792731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUST00000114444.9	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850102	55835868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUST00000114446.8	chr6	+	1719	6	FSM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	927.333381260483	1283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447674	51460684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUST00000114449.7	chr5	+	2193	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGAGGTGTTTGTAA	NA	False	NA	20	True	AATAAA	-21	NA	33492852	33530640	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
ENSMUST00000114459.8	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	4848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUST00000114503.9	chrX	-	1656	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72326501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUST00000114518.9	chrX	+	1652	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192401	72202478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUST00000114524.9	chrX	-	1584	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ENSMUST00000114530.8	chrX	-	1220	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114530.8	1220	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	102.200477004758	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286581
ENSMUST00000114533.9	chr5	+	2424	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684338	31711381	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
ENSMUST00000114551.10	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUST00000114582.9	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599533	70604282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000114590.8	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
ENSMUST00000114603.8	chr5	-	1966	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350358	31344911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
ENSMUST00000114618.8	chr6	-	2775	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_12	268.321921839443	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ENSMUST00000114647.8	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
ENSMUST00000114725.3	chrX	+	2156	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	0	0	0	0	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAACCTCCCTGTCTGGC	NA	False	NA	9	True	TATAAA	-2	NA	56454513	56534127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ENSMUST00000114786.8	chr5	+	2048	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360269	30389587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000114797.2	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39779479_39782420_39782546_39787797
ENSMUST00000114810.2	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUST00000114822.2	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUST00000114839.8	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUST00000114888.11	chr17	+	1631	5	FSM	ENSMUSG00000046711.17	ENSMUST00000114888.11	1631	5	0	0	0	0	multi-exon	FALSE	canonical	3	2165	junction_2	1373.00680533638	4310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTCTGGTGTAAGGAG	NA	False	NA	NA	False	AATAAA	-21	NA	27775558	27782642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUST00000114897.9	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	1695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUST00000114925.10	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469219	37478065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000114935.9	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9278	False	NA	-18	True	AATAAA	-17	NA	27158517	27156946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ENSMUST00000114945.9	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
ENSMUST00000114975.8	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	-9	True	AATAAA	-19	NA	25113467	25067745	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ENSMUST00000114981.3	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUST00000115021.8	chr6	+	4041	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCGTGCATTCTTTG	1257	False	NA	32	True	AATAAA	-20	NA	34686376	34752408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
ENSMUST00000115075.2	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	2450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115076.8	chr16	+	519	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	12269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32877175	32880545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115078.8	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	13509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876896	32880535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115079.8	chr16	+	510	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115079.8	510	5	0	0	0	0	multi-exon	FALSE	canonical	3	3184	junction_1	2675.04705566089	15956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCCTAAATTGAGTT	NA	False	NA	21	True	AATAAA	-36	NA	32876835	32880546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_32876926_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115118.8	chrX	-	3344	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCATTTAAAGATACT	NA	False	NA	-28	True	AATAAA	-20	NA	37665073	37622150	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ENSMUST00000115160.10	chr6	-	3485	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509782	30481226	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ENSMUST00000115168.9	chr16	+	1718	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTTTCTTCAGTCTG	6492	False	NA	26	True	AATAAA	-26	NA	31918617	31926887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
ENSMUST00000115195.8	chr5	-	1994	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990214	21962279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
ENSMUST00000115206.8	chr6	+	1879	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	15	True	NA	7	True	AATAAA	-23	NA	30048029	30144859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUST00000115231.4	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	18126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36346403_36347637_36347742_36348777
ENSMUST00000115246.9	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	472	False	NA	25	True	ATTAAA	-16	NA	61688388	61715187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
ENSMUST00000115248.10	chrX	-	3340	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127899	36112195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUST00000115262.9	chr17	+	886	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTTGTTGTCTCATG	NA	False	NA	19	True	AATAAA	-19	NA	24955615	24961752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
ENSMUST00000115272.9	chr9	+	2533	14	FSM	ENSMUSG00000001833.18	ENSMUST00000115272.9	2533	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	485.66204432895	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTTGTATATTCT	NA	False	NA	22	True	AATAAA	-22	NA	25163734	25219867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_25163996_25176597_25176603_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUST00000115313.8	chrX	-	3251	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_8	283.721694623446	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCGTTACTCCTCAGTTT	NA	False	NA	-8	True	AATAAA	-29	NA	23231321	23085509	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
ENSMUST00000115331.10	chr9	+	1983	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	18	True	AATAAA	-14	NA	21914361	21925516	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUST00000115342.10	chrX	+	883	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	False	NA	16	True	AATAAA	-17	NA	20736404	20740972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000115352.10	chr1	-	960	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	0	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUST00000115371.9	chr17	+	1646	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	884	False	NA	NA	False	AATAAA	-18	NA	24633619	24644869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000115389.8	chr6	+	2546	12	FSM	ENSMUSG00000029670.13	ENSMUST00000115389.8	2546	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	46.7513203066312	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	-3	True	NA	22	True	AATATA	-21	NA	21949655	21974902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968916_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUST00000115441.9	chr5	-	2972	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609538	5587453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUST00000115467.11	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUST00000115490.9	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	116.170706876108	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	765	False	NA	-22	True	AATAAA	-13	NA	23892845	23887592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ENSMUST00000115516.11	chr17	-	2104	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_1	5.98665181883831	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4823	False	NA	0	True	ATTAAA	-21	NA	23805206	23794817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ENSMUST00000115522.10	chr16	+	1134	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCTTTATGCTTCTG	5899	False	NA	12	True	NA	NA	NA	20430342	20437761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUST00000115524.8	chrX	+	2022	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_10583944_10584222
ENSMUST00000115529.8	chr1	+	930	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGGTAAGATGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	4878133	4915575	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ENSMUST00000115535.3	chr17	-	2784	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUST00000115595.8	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUST00000115606.9	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	18245166	18297823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUST00000115615.9	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	1380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6535	False	NA	-9	True	ATTAAA	-23	NA	8011962	8008599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115616.8	chrX	-	1225	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	255.122192945524	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6485	False	NA	-16	True	ATTAAA	-16	NA	8012012	8008606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115617.10	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6562	False	NA	-16	True	ATTAAA	-16	NA	8011935	8008606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115621.9	chrX	-	1338	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	3	764	junction_2	192.247597875471	1419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6378	False	NA	-7	True	ATTAAA	-25	NA	8012119	8008597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115628.10	chr16	-	1622	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161906	18118690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
ENSMUST00000115640.8	chr16	+	2367	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	269	False	NA	8	True	AATAAA	-22	NA	18066746	18071366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUST00000115645.10	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	5066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUST00000115655.8	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
ENSMUST00000115677.8	chrX	+	2943	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630197	7641440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000115689.10	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000115795.9	chr16	+	2335	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981208	14010782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
ENSMUST00000115807.9	chr16	-	964	4	FSM	ENSMUSG00000022683.14	ENSMUST00000115807.9	964	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.0720922897661	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548307	13532920	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_13533461_13542893_13543080_13545826_13545978_13548220
ENSMUST00000115844.3	chr16	-	3292	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUST00000115851.10	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUST00000115854.4	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501959	4525559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ENSMUST00000116238.9	chr10	-	3851	22	FSM	ENSMUSG00000037012.19	ENSMUST00000116238.9	3851	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	213.005232388651	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	-3	True	AGTAAA	-19	NA	62215687	62104882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62188836_62188885_62194114_62194210_62200801_62200848_62215593
ENSMUST00000116279.10	chr4	-	1969	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTCTTGGTTCATC	NA	False	NA	0	True	ATTAAA	-23	NA	134262698	134252867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ENSMUST00000116305.8	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000116358.8	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	4091	False	NA	11	True	AATAAA	-21	NA	69804875	69807416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000116359.3	chr11	+	3978	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5272	False	NA	18	True	AATAAA	-18	NA	68906922	68927296	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000116380.9	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	194.730412606121	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUST00000116403.9	chr13	-	2970	18	FSM	ENSMUSG00000021546.19	ENSMUST00000116403.9	2970	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	2601.31267501967	1818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	3924	False	NA	-8	True	AATACA	-15	NA	58551157	58538955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206_58550327_58551084
ENSMUST00000116415.9	chr8	-	1520	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	25.939533052852	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835066	121824291	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUST00000116432.2	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ENSMUST00000116434.11	chr13	-	2600	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586925	21571172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
ENSMUST00000116440.9	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
ENSMUST00000116468.2	chr14	+	2939	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUST00000116514.4	chr6	-	2739	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2832	False	NA	-1	True	AATAAA	-19	NA	136805231	136790651	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ENSMUST00000116515.9	chr6	-	2075	5	FSM	ENSMUSG00000032641.19	ENSMUST00000116515.9	2075	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	27.6981497577004	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874888	134846055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_134847407_134854179_134854298_134864592_134864749_134873820_134874177_134874794
ENSMUST00000116527.2	chrX	+	837	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	2369	junction_2	964	2807	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039744	135041192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135039916_135040271_135040349_135040603
ENSMUST00000116542.9	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	AATAAA	-14	NA	10181307	10176501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10178462_10181167
ENSMUST00000116551.10	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	TRUE	canonical	3	803	junction_1	23.6971634495683	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUST00000116552.8	chr9	+	888	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919847	69930020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
ENSMUST00000116556.4	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUST00000116560.3	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	3070.36039578418	6372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	12	True	NA	NA	NA	5540512	5544057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
ENSMUST00000116567.4	chr19	+	1388	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2730	False	NA	8	True	AATAAA	-19	NA	5091381	5099945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUST00000116578.8	chrX	-	1418	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	2160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974456	72965726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
ENSMUST00000116621.2	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUST00000116641.9	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	TRUE	canonical	1	15	junction_2	37.5467708331888	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798150	25881800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUST00000117069.8	chr1	-	1363	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484588	58470152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
ENSMUST00000117083.2	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUST00000117095.8	chr7	-	2282	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252637	27231424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ENSMUST00000117136.2	chr16	-	758	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	False	NA	-11	True	ATTAAA	-13	NA	15681233	15666313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
ENSMUST00000117146.9	chr1	-	2181	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTTCTATGACAATG	NA	False	NA	NA	False	TATAAA	-21	NA	16689713	16640005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUST00000117268.9	chr4	-	3266	7	FSM	ENSMUSG00000040550.18	ENSMUST00000117268.9	3266	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTCAAATTGTCATTTGT	-2	True	NA	9	True	AATAAA	-28	NA	14826587	14809497	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ENSMUST00000117280.8	chr4	+	5328	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
ENSMUST00000117291.8	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
ENSMUST00000117299.10	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
ENSMUST00000117355.2	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	1857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000117399.2	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
ENSMUST00000117411.8	chr6	+	933	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448408	40457926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000117425.8	chr5	-	1231	7	FSM	ENSMUSG00000015806.13	ENSMUST00000117425.8	1231	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45605515	45591394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45605434
ENSMUST00000117449.8	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUST00000117536.8	chr5	+	1862	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	347	False	NA	9	True	NA	NA	NA	77099214	77115160	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000117557.8	chr9	+	2019	9	FSM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7062.92189779662	25927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2485	False	NA	10	True	AATAAA	-20	NA	40712597	40716496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714091_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUST00000117583.8	chr6	+	950	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	0	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986817	87005441	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUST00000117597.2	chr10	+	1799	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858060	85884187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUST00000117600.9	chr17	+	1595	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	1949.43562345618	3863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	27775626	27782644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414
ENSMUST00000117634.2	chr7	+	1281	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4651	False	NA	39	True	NA	NA	NA	141056312	141073334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUST00000117644.8	chr16	-	1727	12	FSM	ENSMUSG00000058240.15	ENSMUST00000117644.8	1727	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	525.741459887489	1559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTTTTTAAATATTCA	9001	False	NA	NA	False	NA	NA	NA	91525690	91486229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000117757.9	chr6	-	1273	7	FSM	ENSMUSG00000057666.19	ENSMUST00000117757.9	1273	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4049.97499649346	2585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125143430	125138815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125143356
ENSMUST00000117812.8	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
ENSMUST00000117814.8	chr1	+	1268	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2650	False	NA	18	True	CATAAA	-18	NA	92862487	92868694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
ENSMUST00000117831.8	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
ENSMUST00000117836.8	chr16	+	1099	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169737	91190928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
ENSMUST00000117878.8	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUST00000117890.8	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105616	25111123	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUST00000117892.2	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	1	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682235	97690573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_97682498_97687783_97687952_97688467
ENSMUST00000117989.2	chr7	+	1317	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_2	14	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910962	79915122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79911172_79911568_79911680_79914125
ENSMUST00000118012.9	chr2	+	1213	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGAGTTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	176490404	176500411	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
ENSMUST00000118097.8	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	1052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607513	45591394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
ENSMUST00000118108.2	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ENSMUST00000118110.3	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ENSMUST00000118155.8	chr11	-	884	3	FSM	ENSMUSG00000020738.17	ENSMUST00000118155.8	884	3	0	0	0	0	multi-exon	FALSE	canonical	2	199	junction_1	1955	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427007	115413927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115414596_115425377_115425510_115426923
ENSMUST00000118190.2	chr7	+	1391	3	FSM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	414	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAACTTTACCTTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	81413030	81419228	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_81413113_81417274_81417472_81418116
ENSMUST00000118193.8	chr15	+	1671	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215005	5247817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUST00000118218.8	chrX	+	1611	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUST00000118223.2	chr11	-	69	1	FSM	ENSMUSG00000084277.2	ENSMUST00000118223.2	69	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTCCTTCCCTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	115548385	115548316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115548300_115548400
ENSMUST00000118283.8	chr17	-	1388	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71160541	71151205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71152268_71153166_71153394_71160442
ENSMUST00000118310.8	chr16	+	1700	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151114	87165630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
ENSMUST00000118368.8	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	False	NA	-35	True	AATAAA	-11	NA	43317044	43311099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
ENSMUST00000118466.8	chr14	-	1567	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735745	40715696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
ENSMUST00000118501.8	chr7	-	684	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	927	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	35346946	35341406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
ENSMUST00000118504.9	chr17	-	2474	16	FSM	ENSMUSG00000024039.16	ENSMUST00000118504.9	2474	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	69.6264317626575	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGTGTCGACCTTATTT	1872	False	NA	-16	True	NA	NA	NA	31856212	31831613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUST00000118515.9	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145830	44139534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000118535.9	chr8	+	1419	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
ENSMUST00000118539.2	chr3	-	1815	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630714	157599884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUST00000118551.8	chr18	+	602	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	3574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGGTTCTGGTGT	NA	False	NA	63	True	AATAAA	-13	NA	60907752	60911613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000118558.5	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
ENSMUST00000118627.2	chr11	-	831	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8018	False	NA	NA	False	NA	NA	NA	3143424	3135567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUST00000118703.8	chr16	-	2554	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608156	4584704	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
ENSMUST00000118762.9	chr17	+	3853	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171395	29188523	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUST00000118784.8	chr11	+	1404	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095236	88102333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000118788.8	chr17	+	1191	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUST00000118808.9	chr7	-	1872	7	FSM	ENSMUSG00000008140.19	ENSMUST00000118808.9	1872	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTCTTGGTTCATTCC	NA	False	NA	28	True	NA	NA	NA	44145953	44139360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000118816.6	chr5	-	1307	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUST00000118830.8	chr5	+	1014	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	695	False	NA	17	True	AATAAA	-17	NA	122492447	122501349	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
ENSMUST00000118875.8	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	47049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142736	125138816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUST00000118882.2	chr5	-	1984	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	2	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28415020	28407446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUST00000118885.8	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	156.624391459313	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	False	NA	10	True	AATAAA	-11	NA	4574766	4584109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUST00000118902.8	chr4	-	1887	10	FSM	ENSMUSG00000032897.18	ENSMUST00000118902.8	1887	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	134.081235740792	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120688769	120614634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120688637
ENSMUST00000118924.2	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20368	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528464	95529085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_95528500_95529100
ENSMUST00000118927.8	chr7	+	2410	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	0	0	0	0	multi-exon	TRUE	canonical	3	240	junction_5	25.4348893009189	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438750	48477188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUST00000118976.9	chr7	-	2175	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020715	16007969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUST00000119002.2	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1142	False	NA	-7	True	AATAAA	-13	NA	88460166	88457126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
ENSMUST00000119273.2	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ENSMUST00000119274.3	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ENSMUST00000119278.8	chr7	-	2394	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968599	112914849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
ENSMUST00000119353.9	chr8	+	1720	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119353.9	1720	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	528.343741682439	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980373	70987978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000119379.2	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569516	39576405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ENSMUST00000119438.2	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	599	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	105385190	105384545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_105384500_105385200
ENSMUST00000119464.2	chr16	+	2878	8	FSM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	133.242452020398	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36514399	36547103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
ENSMUST00000119504.8	chr16	+	2562	17	FSM	ENSMUSG00000025616.15	ENSMUST00000119504.8	2562	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	72.8774388528439	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTTCACCTAAGTAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	87251866	87280198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266565_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279994
ENSMUST00000119633.8	chr19	+	2267	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800028	60824665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUST00000119698.8	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000119718.8	chr4	+	2498	5	FSM	ENSMUSG00000078502.11	ENSMUST00000119718.8	2498	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	22.5111083689809	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	145311772	145351911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_145311905_145343687_145343746_145347127_145347255_145348721_145349454_145350462
ENSMUST00000119736.8	chr8	+	1837	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCTGACATAATTTTTC	NA	False	NA	33	True	AATAAA	-33	NA	106738138	106780472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUST00000119827.8	chr10	-	1253	9	FSM	ENSMUSG00000019942.14	ENSMUST00000119827.8	1253	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	961.092444825158	997	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTCTGTATATGTGCA	NA	False	NA	-28	True	TTTAAA	-1	NA	69188733	69174153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69187421_69187513_69188665
ENSMUST00000119945.8	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7141	False	NA	7	True	NA	NA	NA	47679815	47689606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUST00000119950.2	chr2	+	379	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	474	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6552	False	NA	14	True	AATAAA	-19	NA	155986159	155987714	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155986201_155986364_155986510_155987521
ENSMUST00000119953.2	chr16	-	1945	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUST00000119968.8	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	False	NA	16	True	AATAAA	-18	NA	87826812	87830969	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000119976.8	chr8	+	2136	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUST00000120041.8	chr14	-	2164	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5295	False	NA	51	True	AATAAA	-19	NA	55880708	55873421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
ENSMUST00000120095.8	chr4	-	2549	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62389124	62370868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
ENSMUST00000120240.8	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ENSMUST00000120272.8	chr3	+	3323	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	AATAAA	-20	NA	159201069	159235592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUST00000120281.8	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUST00000120299.4	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
ENSMUST00000120344.8	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUST00000120356.8	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUST00000120364.2	chr5	+	575	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253737	74254998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_74253801_74254018_74254081_74254548
ENSMUST00000120377.8	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ENSMUST00000120389.8	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000120447.8	chr1	-	2430	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164135058	164118957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUST00000120450.2	chr16	-	1865	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	0	0	0	0	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443823	91430292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUST00000120697.8	chr3	+	1475	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084796	89090072	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUST00000120805.8	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
ENSMUST00000120879.8	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000120912.8	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	2163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000120928.2	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
ENSMUST00000121004.3	chr7	+	1840	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172700	127182477	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUST00000121185.8	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
ENSMUST00000121204.8	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
ENSMUST00000121228.2	chr11	-	704	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	27	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6805	False	NA	0	True	AATAAA	-26	NA	88857757	88855483	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_88856100_88857540_88857603_88857731
ENSMUST00000121231.8	chr3	-	2121	9	FSM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.7074191137345	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106454898	106410298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446913_106454738
ENSMUST00000121304.2	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6864	False	NA	-10	True	AATAAA	-12	NA	75757448	75732610	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
ENSMUST00000121360.8	chr6	+	1188	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	1920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000121442.2	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129512156_129512284_129512429_129512806
ENSMUST00000121532.8	chr7	-	915	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6242	False	NA	-2	True	AATAAA	-14	NA	126497425	126485391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
ENSMUST00000121542.2	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.68606270481621	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ENSMUST00000121623.8	chr8	-	884	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	2108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTAATTGGTGTCTAG	NA	False	NA	-13	True	AATAAA	-19	NA	70975813	70960921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000121651.8	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	-5	True	NA	23	True	ATTAAA	-16	NA	3938913	3943521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000121783.7	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	3	1223	junction_2	41.2946727799119	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747037	23731368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ENSMUST00000121920.8	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000121937.8	chr14	-	2398	5	FSM	ENSMUSG00000002320.16	ENSMUST00000121937.8	2398	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	147.332956258944	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCTGTCGTTGGAAGTT	5231	False	NA	48	True	AATAAA	-16	NA	55880772	55873424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55874070_55875366_55875590_55877841_55878028_55878423_55879046_55880050
ENSMUST00000122026.6	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUST00000122038.8	chr1	-	2850	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137305	60116026	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
ENSMUST00000122062.2	chr11	+	346	1	FSM	ENSMUSG00000081766.4	ENSMUST00000122062.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1705	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGAGGGCCCCACAGCC	NA	False	NA	NA	False	NA	NA	NA	88863482	88863828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_88863500_88863800
ENSMUST00000122110.8	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ENSMUST00000122188.10	chr8	+	2371	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	73.1522385166715	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350733	87443259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000122202.8	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	2124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895670	26886431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUST00000122204.3	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	44070485	44071259	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_44070500_44071300
ENSMUST00000122279.2	chr18	+	667	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	32930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60909310	60911617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000122384.9	chr9	-	1167	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	3694	False	NA	21	True	GATAAA	-10	NA	99318979	99269980	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
ENSMUST00000122817.8	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUST00000123244.8	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUST00000123355.8	chr7	+	1298	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251948	30254864	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30252153_30253686_30253810_30253893
ENSMUST00000123413.8	chr16	+	1965	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	2839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6072	False	NA	NA	False	AATAAA	-1	NA	22926526	22932680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUST00000123498.8	chr12	+	2117	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277231	57543985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ENSMUST00000123544.2	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	60822693	60811742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_60812732_60822391
ENSMUST00000123680.2	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_22068210_22069027
ENSMUST00000123701.9	chr11	-	1259	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	0	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9889	False	NA	-4	True	AATAAA	-26	NA	69871089	69859053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
ENSMUST00000123774.2	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
ENSMUST00000123836.2	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUST00000123924.8	chr13	+	2328	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	24.7839645327212	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399701	98410426	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
ENSMUST00000123976.2	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
ENSMUST00000124187.8	chr2	+	3154	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439863	120452041	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUST00000124200.8	chrX	+	1742	9	FSM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	66.075241202738	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
ENSMUST00000124334.8	chr19	-	2067	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538430	5532859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ENSMUST00000124340.8	chr7	+	2556	9	FSM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	138.760078462791	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383362	143402147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_143383477_143383875_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUST00000124518.2	chr2	-	2383	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046446	157016905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ENSMUST00000124540.8	chr2	+	837	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4613	False	NA	12	True	AATAAA	-34	NA	102904039	102922976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUST00000124565.3	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	72892658	72887003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_72887479_72892422
ENSMUST00000124621.2	chr15	+	513	3	FSM	ENSMUSG00000022201.17	ENSMUST00000124621.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	305.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCCTAGCTGTAA	75	False	NA	NA	False	ACTAAA	-25	NA	12117951	12122423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_12118034_12118324_12118425_12122092
ENSMUST00000124745.8	chr8	+	1933	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	0	0	0	0	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUST00000124790.8	chr8	-	945	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	5	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGAGTTTATTGTG	NA	False	NA	-24	True	ATTAAA	-18	NA	65489824	65481071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_65481644_65488316_65488407_65489541
ENSMUST00000124818.3	chr11	-	771	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	1	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6475818_6476354_6476438_6478305
ENSMUST00000124838.2	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_3	35.482102415679	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7489	False	NA	-10	True	AATAAA	-8	NA	7656655	7643719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000124857.8	chr4	+	1931	14	FSM	ENSMUSG00000028687.18	ENSMUST00000124857.8	1931	14	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	30.7380611354533	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAACTTTCTGGGCTTTC	NA	False	NA	33	True	AATAAA	-23	NA	116664934	116676635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675480_116676451
ENSMUST00000124904.8	chrX	+	1744	9	FSM	ENSMUSG00000067768.13	ENSMUST00000124904.8	1744	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	126.780075327316	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72258088_72258379_72258962_72259091_72259265_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000124932.2	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	1280	junction_1	0	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286943	69287506	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69287187_69287345
ENSMUST00000124949.2	chr2	-	1589	5	FSM	ENSMUSG00000039033.12	ENSMUST00000124949.2	1589	5	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.8423695919137	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCTCAGTGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	139884134	139818451	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013
ENSMUST00000124975.2	chr4	+	282	3	FSM	ENSMUSG00000085525.8	ENSMUST00000124975.2	282	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	186	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206941	146215004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_146207052_146209452_146209546_146214925
ENSMUST00000124996.8	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346946	34362151	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_34347233_34361963
ENSMUST00000125040.8	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUST00000125127.8	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80250012	80255947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
ENSMUST00000125172.8	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	3558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUST00000125183.2	chr3	-	923	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGGTGTGTGCCAGT	NA	False	NA	-4	True	AATGAA	-19	NA	96634791	96630738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96631369_96633149_96633316_96634664
ENSMUST00000125243.3	chr2	-	1425	14	FSM	ENSMUSG00000061136.17	ENSMUST00000125243.3	1425	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	212.889059087803	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081184	53043061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53078459_53078553_53079980_53080113_53081034
ENSMUST00000125257.3	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_9	63.7020456287233	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	-73	True	AATAAA	-18	NA	91860655	91850196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUST00000125445.8	chr4	-	1851	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	AAAAAG	-21	NA	129590589	129570147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
ENSMUST00000125612.2	chr10	+	1169	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
ENSMUST00000125630.8	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUST00000125786.8	chr4	+	2937	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8258	False	NA	22	True	NA	NA	NA	156194441	156211722	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUST00000125894.9	chr6	-	1216	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9882	False	NA	0	True	TATAAA	-18	NA	83133379	83129690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ENSMUST00000125929.2	chr11	+	779	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTGTTTCTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	6241640	6247677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_6241694_6246951
ENSMUST00000125992.2	chr10	+	399	2	FSM	ENSMUSG00000025393.13	ENSMUST00000125992.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATGTCTGTTTATGTTG	NA	False	NA	21	True	AATAAA	-14	NA	127924909	127926141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_127925028_127925860
ENSMUST00000126019.2	chrX	+	1364	5	FSM	ENSMUSG00000031311.18	ENSMUST00000126019.2	1364	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	1520.69496859166	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100473340	100486037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121
ENSMUST00000126112.8	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUST00000126116.3	chr7	-	1429	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTAACTTGGTTATTT	NA	False	NA	-9	True	NA	NA	NA	29894473	29886367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ENSMUST00000126148.2	chr11	-	513	3	FSM	ENSMUSG00000025137.16	ENSMUST00000126148.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	25	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCCAGAGCAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	120508736	120506001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_120506279_120506674_120506764_120508589
ENSMUST00000126245.2	chr3	-	1875	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	440	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	False	NA	-7	True	AATAAA	-44	NA	88821306	88816921	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ENSMUST00000126283.8	chrX	-	2153	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAAGTGTAAAAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	96420822	96381396	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUST00000126380.4	chr4	+	1213	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035945	132038335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461
ENSMUST00000126386.8	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
ENSMUST00000126485.2	chr17	-	2481	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	18	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_22160832_22172868_22173035_22181236
ENSMUST00000126523.9	chr18	+	1282	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTGATTTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	12301773	12314177	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
ENSMUST00000126529.2	chr17	-	1335	3	FSM	ENSMUSG00000024048.16	ENSMUST00000126529.2	1335	3	0	0	0	0	multi-exon	FALSE	canonical	3	3116	junction_2	53	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2316	False	NA	-19	True	ATTAAA	-14	NA	71309160	71301288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303891_71309102
ENSMUST00000126581.2	chr5	-	562	2	FSM	ENSMUSG00000004642.14	ENSMUST00000126581.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	33809645	33808968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_33809424_33809538
ENSMUST00000126641.2	chr4	+	3754	6	FSM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	623.730198082472	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4321	False	NA	23	True	AATAAA	-28	NA	135583057	135597219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUST00000126705.9	chr8	+	895	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	1	True	NA	13	True	AATAAA	-15	NA	106053019	106055684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
ENSMUST00000126794.2	chr7	+	312	3	FSM	ENSMUSG00000030432.13	ENSMUST00000126794.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	3317	2079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3412	False	NA	17	True	AATAAA	-32	NA	4796591	4797561	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_4796626_4797048_4797182_4797416
ENSMUST00000126909.8	chr2	+	1554	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUST00000127027.2	chr17	+	2667	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
ENSMUST00000127234.8	chr18	+	1755	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250109	80255956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
ENSMUST00000127309.8	chr2	-	2123	10	FSM	ENSMUSG00000039660.17	ENSMUST00000127309.8	2123	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.729409885181	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068454	30063464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
ENSMUST00000127405.2	chr11	+	1042	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	0	0	0	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	3601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCAGTTCTAACGGGT	NA	False	NA	NA	False	TATAAA	-3	NA	51510561	51514541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
ENSMUST00000127477.8	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	2959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32791138	32805715	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUST00000127505.8	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	1189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000127587.8	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
ENSMUST00000127647.3	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
ENSMUST00000127652.2	chr4	+	1332	8	FSM	ENSMUSG00000028618.12	ENSMUST00000127652.2	1332	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	584.439518701814	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGAGTGTTGGGCTTT	72	False	NA	13	True	ATTAAA	-25	NA	107036214	107058191	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUST00000127878.2	chr19	+	1026	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10181629_10183787_10184665_10185080
ENSMUST00000127896.8	chr9	+	575	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	4540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTCCCTCTGCTTCT	NA	False	NA	32	True	AATAAA	-16	NA	66853372	66856796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
ENSMUST00000127939.2	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUST00000127996.8	chr9	-	2289	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	18.9747200242849	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122351	35115503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUST00000128243.2	chr2	-	1008	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAGGAAAAAAAACC	NA	False	NA	-32	True	AATAGA	-8	NA	156022132	156020478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156021161_156021806
ENSMUST00000128518.2	chr4	+	297	1	FSM	ENSMUSG00000078238.5	ENSMUST00000128518.2	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	493	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTCAGTTCCCATCCAA	NA	False	NA	NA	False	NA	NA	NA	115924464	115924761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_115924500_115924800
ENSMUST00000128519.8	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	TRUE	canonical	3	9657	junction_9	1461.90417007037	8868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUST00000128548.2	chr4	-	1654	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_2	17	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTATATAATTATTTT	0	True	NA	NA	False	AATAAA	-20	NA	59783838	59774087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_59775550_59782253_59782335_59783727
ENSMUST00000128571.2	chrX	-	540	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	0	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7289227	7278341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7278772_7289117
ENSMUST00000128715.8	chr8	-	3463	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACTTTTGTGTGTTT	9833	False	NA	20	True	NA	NA	NA	25592001	25530855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ENSMUST00000128784.2	chr11	+	585	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCAAAGTCTATGCAAT	8951	False	NA	24	True	AATAAA	-29	NA	116734386	116736959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116734601_116736588
ENSMUST00000128788.8	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427186	78432563	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUST00000128972.9	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000129021.9	chr4	-	1378	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	21	False	NA	-8	True	AATATA	-17	NA	40703187	40686241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
ENSMUST00000129245.8	chr12	+	1498	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506883	109511202	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_109506983_109509582_109509689_109509909
ENSMUST00000129256.2	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	False	NA	-9	True	AATAAA	-16	NA	76070464	76067784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_76068209_76070238
ENSMUST00000129557.2	chr11	-	1372	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGGACTTTGCATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98084102	98060736	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUST00000129595.8	chr8	+	1920	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583623	85595885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000129668.8	chr8	+	691	7	FSM	ENSMUSG00000002345.19	ENSMUST00000129668.8	691	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	76.8253791978204	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCTTTCCATGCTGGG	8837	False	NA	22	True	AATACA	-16	NA	70592372	70599911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597147_70597248_70597673_70597785_70598460_70598541_70599739
ENSMUST00000129673.8	chr2	+	834	3	FSM	ENSMUSG00000062647.17	ENSMUST00000129673.8	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	4686	junction_2	409.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26802203	26803330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26802814_26802999_26803070_26803176
ENSMUST00000129713.2	chr2	-	1309	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTAGCTACTTTATT	7129	False	NA	-4	True	NA	NA	NA	167996433	167994522	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_167995672_167996273
ENSMUST00000129777.2	chr11	-	632	3	FSM	ENSMUSG00000020914.18	ENSMUST00000129777.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	1518	junction_2	50	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTCCAATAAAGTCCAG	NA	False	NA	NA	False	AAAAAG	-6	NA	98915004	98912910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_98913257_98913665_98913819_98914871
ENSMUST00000129808.2	chr7	+	955	4	FSM	ENSMUSG00000002043.18	ENSMUST00000129808.2	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	59.4025813131607	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCCCTTAAATGTGGT	525	False	NA	NA	False	NA	NA	NA	19242654	19249243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_19242758_19248125_19248194_19248346_19249016_19249128
ENSMUST00000129847.8	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	26725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
ENSMUST00000129917.8	chr17	-	1790	5	FSM	ENSMUSG00000061046.10	ENSMUST00000129917.8	1790	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	4.7169905660283	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCAGGTCTGTTTAT	4591	False	NA	-2	True	NA	NA	NA	26004309	26001763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26003977
ENSMUST00000129935.8	chr17	+	949	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
ENSMUST00000129947.9	chrX	-	1319	8	FSM	ENSMUSG00000031167.17	ENSMUST00000129947.9	1319	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	511.677353696364	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6562	False	NA	NA	False	ATTAAA	-38	NA	8011935	8008710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010413_8010685_8010811_8010919_8011193_8011312_8011876
ENSMUST00000130098.8	chr8	+	1881	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
ENSMUST00000130174.2	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUST00000130216.3	chr17	+	2618	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	9000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251601	29262347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUST00000130487.8	chr7	-	405	3	FSM	ENSMUSG00000061787.16	ENSMUST00000130487.8	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	227	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTATTGTTCTTGC	NA	False	NA	-9	True	AATAAA	-13	NA	80994279	80992479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058
ENSMUST00000130621.2	chr11	-	886	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGTAGGGGTCTCGCC	5338	False	NA	NA	False	NA	NA	NA	6224870	6221660	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
ENSMUST00000130643.9	chr17	-	4653	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTCCACAAGTTTGGT	NA	False	NA	-11	True	AATAAA	-20	NA	28841683	28806621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUST00000130645.8	chr3	+	2953	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242273	19274981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUST00000130731.2	chr3	-	705	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAACTGCCTTCAGTTTG	NA	False	NA	-7	True	AGTAAA	-20	NA	30753959	30752270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_30752864_30753847
ENSMUST00000130875.8	chr6	+	690	4	FSM	ENSMUSG00000073155.13	ENSMUST00000130875.8	690	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	461.033621333629	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTCTGGTGAATTAATC	NA	False	NA	13	True	ATTAAA	-17	NA	35229650	35238572	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_35229718_35229890_35229981_35237344_35237399_35238093
ENSMUST00000130880.9	chrX	+	1389	5	FSM	ENSMUSG00000040621.15	ENSMUST00000130880.9	1389	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	17.0293863659264	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_164953547_164959840_164960076_164961787_164961827_164963348_164963806_164972239
ENSMUST00000130881.8	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
ENSMUST00000130911.8	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUST00000131184.8	chr15	+	1819	7	FSM	ENSMUSG00000023051.12	ENSMUST00000131184.8	1819	7	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_2	131.824904913888	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426626	102432109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUST00000131193.3	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUST00000131303.8	chr16	+	532	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245211	18256562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
ENSMUST00000131332.8	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUST00000131365.2	chr2	-	629	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_157437906_157439014
ENSMUST00000131384.3	chr7	-	1974	8	FSM	ENSMUSG00000053801.19	ENSMUST00000131384.3	1974	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	174.077744770806	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCTGAGCTTCTTTGCT	8479	False	NA	0	True	AATAAA	-35	NA	45480368	45474646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018_45480214_45480296
ENSMUST00000131687.2	chr11	+	612	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
ENSMUST00000131728.4	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8692	False	NA	-7	True	AATAAA	-12	NA	128401856	128393636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000131751.7	chr1	-	3583	22	FSM	ENSMUSG00000007097.15	ENSMUST00000131751.7	3583	22	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_18	23.2329229216428	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCCACAGGTCCCGC	NA	False	NA	-14	True	AATAAA	-18	NA	172125631	172102109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
ENSMUST00000131787.2	chr11	+	462	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	3800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUST00000131815.8	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
ENSMUST00000131871.8	chr16	+	1737	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6073	False	NA	NA	False	AATAAA	-18	NA	22926527	22932697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000131909.8	chr8	-	1406	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807261	85801663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
ENSMUST00000131940.8	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
ENSMUST00000131990.2	chr16	-	3283	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAACATCCTCTGTAG	8675	False	NA	NA	False	NA	NA	NA	33787373	33775163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
ENSMUST00000132034.5	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31064111_31064742
ENSMUST00000132093.8	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	1033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUST00000132102.2	chr5	+	1426	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885514	146892416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
ENSMUST00000132193.8	chr7	+	1112	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008212	30013728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
ENSMUST00000132316.8	chr16	+	2105	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUST00000132541.8	chr4	-	490	4	FSM	ENSMUSG00000078350.12	ENSMUST00000132541.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	16.391054470859	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGGGATTCCCTCCCA	NA	False	NA	-22	True	AATAAA	-17	NA	154110393	154107766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_154107911_154108144_154108345_154109960_154110079_154110365
ENSMUST00000132551.2	chr1	-	1405	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	0	0	0	0	multi-exon	FALSE	canonical	3	1179	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	182110369	182106061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_182107284_182110186
ENSMUST00000132584.8	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	57.6520598070876	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
ENSMUST00000133032.8	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000133131.2	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	3219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
ENSMUST00000133280.2	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	104314947	104310229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_104311513_104314621
ENSMUST00000133308.3	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUST00000133316.8	chr5	+	1031	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9186	False	NA	9	True	AATATA	-14	NA	30824240	30831722	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000133426.8	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUST00000133548.5	chr5	+	562	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	4	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCATTCCGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116576778	116600157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_116576898_116577427_116577496_116599782
ENSMUST00000133553.8	chr7	+	825	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000133683.8	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
ENSMUST00000133697.2	chr2	-	845	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162422	25161050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25161594_25161940_25162141_25162320
ENSMUST00000133967.8	chr11	+	421	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729339	69730439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
ENSMUST00000134108.8	chr17	+	2062	11	FSM	ENSMUSG00000002280.12	ENSMUST00000134108.8	2062	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	83.5912076716206	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6920	False	NA	6	True	AATAAA	-18	NA	25992749	26001765	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000166_26000353_26000661_26000820_26000989
ENSMUST00000134328.8	chr7	-	1790	11	FSM	ENSMUSG00000030541.17	ENSMUST00000134328.8	1790	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	581.342962458479	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748130_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUST00000134462.8	chr7	-	1372	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878240	26867851	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
ENSMUST00000134479.8	chr19	-	1438	9	FSM	ENSMUSG00000037916.15	ENSMUST00000134479.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	478.184326384711	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6566	False	NA	3	True	AATAAA	-30	NA	4062666	4057496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4062550
ENSMUST00000134503.8	chr10	+	2140	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404489	75422034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUST00000134611.4	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
ENSMUST00000134657.3	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113024666_113026299_113026378_113027717
ENSMUST00000134702.3	chr3	+	1524	6	FSM	ENSMUSG00000015714.12	ENSMUST00000134702.3	1524	6	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_5	29.9759903923123	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAGAAACAGAGAGTTC	9367	False	NA	NA	False	NA	NA	NA	95227443	95229983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95227547_95227952_95228071_95228252_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUST00000134760.2	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	1621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
ENSMUST00000135091.2	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	0	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	False	NA	-5	True	GATAAA	-14	NA	127634408	127633307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_127633753_127634053
ENSMUST00000135136.8	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUST00000135148.2	chr11	-	562	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGATCTTTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
ENSMUST00000135192.8	chr1	+	4622	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	0	0	0	0	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2764	False	NA	10	True	AATAAA	-15	NA	171910095	171949892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
ENSMUST00000135241.8	chr1	+	1461	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAAGGCTGCAGGT	NA	False	NA	116	True	AATAAA	-21	NA	162398158	162422934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
ENSMUST00000135345.2	chr5	+	632	2	FSM	ENSMUSG00000041453.13	ENSMUST00000135345.2	632	2	0	0	0	0	multi-exon	FALSE	canonical	3	8667	junction_1	0	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146772015	146772796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146772525_146772673
ENSMUST00000135417.2	chr15	-	2412	2	FSM	ENSMUSG00000058600.14	ENSMUST00000135417.2	2412	2	0	0	0	0	multi-exon	FALSE	canonical	3	5662	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	423	False	NA	-20	True	AATAAA	-27	NA	34443306	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34442927_34443170
ENSMUST00000135458.2	chr2	+	560	5	FSM	ENSMUSG00000017299.14	ENSMUST00000135458.2	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	38.3699100858993	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164596058	164601479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
ENSMUST00000135484.8	chr1	+	1570	7	FSM	ENSMUSG00000026201.13	ENSMUST00000135484.8	1570	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	83.8424448328861	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATTTTAGGTCAATG	NA	False	NA	6	True	AATAAA	-14	NA	75187519	75190883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75187644_75187883_75188059_75188568_75188789_75189243_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUST00000135691.2	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
ENSMUST00000135711.8	chrX	-	2125	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974423	72965728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
ENSMUST00000135724.2	chr3	-	437	2	FSM	ENSMUSG00000062908.13	ENSMUST00000135724.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATTAACTGTAACATAC	161	False	NA	NA	False	AATAAA	-28	NA	153650100	153647238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153647608_153650032
ENSMUST00000135941.8	chr1	+	1735	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	2361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173237	171186822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUST00000136026.8	chr8	+	1686	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	0	0	0	0	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTGTGCTGTTCTCTTC	NA	False	NA	NA	False	CATAAA	-14	NA	85598739	85614850	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUST00000136123.8	chr7	-	1298	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_127018814_127020576
ENSMUST00000136155.2	chrX	-	1212	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	2386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGTTTAAGTCTATAAT	NA	False	NA	NA	False	AATAAA	-9	NA	7537611	7534198	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
ENSMUST00000136207.2	chr2	-	1201	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_4	13.2759180473518	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGTTGTGATACTGG	NA	False	NA	NA	False	TATAAA	-16	NA	23045909	23026695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ENSMUST00000136252.8	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUST00000136263.4	chr6	+	1601	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2335	False	NA	10	True	AATAAA	-19	NA	113303959	113311145	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUST00000136447.2	chrX	+	1412	4	FSM	ENSMUSG00000086877.8	ENSMUST00000136447.2	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.8057117628931	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCATGAATGCTATTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	20828352	20852976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_20828897_20833967_20834048_20851664_20851705_20852228
ENSMUST00000136618.8	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUST00000136628.2	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_144436126_144436967
ENSMUST00000136652.8	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
ENSMUST00000136661.8	chr14	-	695	6	FSM	ENSMUSG00000021792.16	ENSMUST00000136661.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	130.026766475215	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGTAAAGAAAATCAAGCT	NA	False	NA	NA	False	AAAAAG	-39	NA	40730223	40716528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40730155
ENSMUST00000136757.8	chr7	-	789	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97228704	97199537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
ENSMUST00000136804.2	chr6	+	855	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125169172_125169478_125169590_125170185
ENSMUST00000136810.8	chr11	-	964	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772921	11764102	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
ENSMUST00000136858.2	chr7	+	525	2	FSM	ENSMUSG00000006333.15	ENSMUST00000136858.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	0	2690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGGTGACAAAGCTGTC	2887	False	NA	NA	False	NA	NA	NA	3708614	3709227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3708919_3709006
ENSMUST00000136872.8	chr2	+	2596	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	0	0	0	0	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	2078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGTGACTTAGTGGT	96	False	NA	NA	False	ATTAAA	-12	NA	90677498	90697154	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000136913.2	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTCCCATCAGCTC	NA	False	NA	-12	True	AATAAA	-13	NA	70959387	70956948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUST00000136933.8	chr2	-	2413	10	FSM	ENSMUSG00000005882.19	ENSMUST00000136933.8	2413	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	134.914879429061	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155771980	155688813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752388_155753660_155753757_155763554_155763648_155771932
ENSMUST00000137170.3	chr12	+	2270	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498195	84578347	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ENSMUST00000137340.2	chr2	-	715	3	FSM	ENSMUSG00000027620.17	ENSMUST00000137340.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	908	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAAGAGGAAAAAAAA	NA	False	NA	-34	True	AATAGA	-6	NA	156022065	156020480	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156020873_156021096_156021161_156021806
ENSMUST00000137423.2	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117011185_117011495
ENSMUST00000137563.8	chr11	-	510	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115308848	115306514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
ENSMUST00000137648.8	chr17	-	2160	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3276	False	NA	0	True	AATAAA	-21	NA	24439825	24434212	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
ENSMUST00000137699.3	chr5	+	838	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACTGTGGGCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
ENSMUST00000137811.8	chr16	+	639	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	0	0	0	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	4116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUST00000138005.2	chr7	+	1709	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910967	79915122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79911680_79914125
ENSMUST00000138037.2	chr14	+	2343	9	FSM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.7945304543636	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55842035	55847487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55842179_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUST00000138149.2	chrX	+	2384	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235816	72246535	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUST00000138226.8	chr9	+	835	7	FSM	ENSMUSG00000032249.15	ENSMUST00000138226.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.326954973336	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTTCTGATTGTA	NA	False	NA	NA	False	NA	NA	NA	62248574	62284983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_62248634_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUST00000138567.9	chr4	+	1350	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUST00000138666.8	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000138666.8	534	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	552.74607390937	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGTTTCTTGTGTATA	4875	False	NA	NA	False	TTTAAA	-1	NA	30176435	30193822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192016_30192058_30193671
ENSMUST00000138759.8	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
ENSMUST00000138800.8	chr2	+	771	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_2	3.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3625	False	NA	1	True	AATAAA	-17	NA	180829328	180830297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180829680_180829796_180829894_180829974
ENSMUST00000138889.8	chr2	+	1192	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697952	30713029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
ENSMUST00000138944.8	chrX	-	1275	3	FSM	ENSMUSG00000025283.16	ENSMUST00000138944.8	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	88	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCTTGAACATCTTTTG	NA	False	NA	NA	False	TTTAAA	-30	NA	153997900	153996301	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028
ENSMUST00000139085.2	chr11	+	953	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729388	69730438	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69730095_69730191
ENSMUST00000139167.3	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_115472654_115473525_115473630_115478900
ENSMUST00000139263.8	chr2	-	2036	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977040	156941320	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUST00000139332.2	chr4	-	2558	4	FSM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	7.78888096369861	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749217	117746103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_117746874_117746951_117748316_117748511_117748625_117748906
ENSMUST00000139349.3	chr7	+	1248	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	36	True	AATAAA	-22	NA	12656257	12660611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
ENSMUST00000139443.8	chr5	-	923	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTAAACTTTAAGCTTG	6793	False	NA	NA	False	AATAAA	-2	NA	148989821	148986210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUST00000139584.2	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUST00000139685.8	chr4	+	2051	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	12977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCACTGTGCAAGGCTTT	NA	False	NA	29	True	ATTAAA	-19	NA	152410323	152418528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000139715.8	chr1	+	2518	21	FSM	ENSMUSG00000026229.18	ENSMUST00000139715.8	2518	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	342.245102229382	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	30	True	NA	NA	NA	85992340	86060471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
ENSMUST00000139718.10	chr19	+	1012	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4370	False	NA	NA	False	AATAAA	-15	NA	4175958	4181725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
ENSMUST00000139782.8	chr8	-	1366	10	FSM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.8282992660481	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835049	121824295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
ENSMUST00000139846.2	chr11	+	447	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTTTTAAGTGCTTGT	4590	False	NA	NA	False	NA	NA	NA	100211343	100212175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUST00000139934.8	chr11	+	865	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562485	116566624	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUST00000139959.8	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	8300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUST00000140131.8	chr6	+	1446	8	FSM	ENSMUSG00000030330.16	ENSMUST00000140131.8	1446	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	35.3345526679608	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7031	False	NA	8	True	AATAAA	-15	NA	125016722	125025965	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024441_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUST00000140254.8	chr10	+	2038	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899482	126903166	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
ENSMUST00000140265.8	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
ENSMUST00000140267.10	chr19	+	938	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4370	False	NA	NA	False	AATAAA	-16	NA	4175958	4181726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000140281.2	chr6	-	455	4	FSM	ENSMUSG00000030042.16	ENSMUST00000140281.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	461.738983505713	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATTCAAGCCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	82629499	82624823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629365
ENSMUST00000140291.2	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
ENSMUST00000140375.8	chr9	+	1921	7	FSM	ENSMUSG00000032309.16	ENSMUST00000140375.8	1921	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.947759623971	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCAACTGGTGTTGTA	NA	False	NA	2	True	AATAAA	-9	NA	55116271	55131708	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125717_55125764_55128305_55128472_55130523
ENSMUST00000140405.10	chr19	+	874	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4400	False	NA	NA	False	AATAAA	-16	NA	4175988	4181726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUST00000140411.8	chr7	+	599	6	FSM	ENSMUSG00000025487.16	ENSMUST00000140411.8	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_5	133.449016481951	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGCTTGGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	140462341	140467178	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931
ENSMUST00000140521.8	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000140570.8	chr2	+	3543	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	11	True	AATAAA	-21	NA	121786960	121843096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
ENSMUST00000140575.8	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506585	152524260	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
ENSMUST00000140879.2	chr5	-	2651	2	FSM	ENSMUSG00000047215.15	ENSMUST00000140879.2	2651	2	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548741	65545707	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_65548336_65548718
ENSMUST00000140931.2	chr5	-	2369	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTACTTCATTTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	33815243	33810562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
ENSMUST00000141125.8	chr1	-	2085	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157913	44146044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUST00000141470.2	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25161594_25161940
ENSMUST00000141531.8	chr11	-	1503	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998945	115996577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
ENSMUST00000141881.2	chr11	-	822	2	FSM	ENSMUSG00000057113.14	ENSMUST00000141881.2	822	2	0	0	0	0	multi-exon	FALSE	canonical	3	19753	junction_1	0	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33104465	33102510	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_33102853_33103985
ENSMUST00000141916.8	chr7	+	2752	9	FSM	ENSMUSG00000058454.16	ENSMUST00000141916.8	2752	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	182.381468356848	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383813	143402147	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_143384003_143387545_143387674_143390254_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUST00000142010.2	chr18	+	956	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464228	34469606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
ENSMUST00000142029.2	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	False	NA	29	True	ATTAAA	-18	NA	127137576	127141602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_127137692_127140695
ENSMUST00000142087.2	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	False	NA	31	True	ATTAAA	-14	NA	25512017	25510078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
ENSMUST00000142127.8	chr2	-	851	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
ENSMUST00000142141.3	chr17	+	451	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27236960	27241491	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27237145_27241224
ENSMUST00000142424.2	chr9	+	1394	10	FSM	ENSMUSG00000032563.17	ENSMUST00000142424.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.559127200181	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930499	104954665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_104930712_104931713_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUST00000142440.2	chr4	-	917	3	FSM	ENSMUSG00000059291.16	ENSMUST00000142440.2	917	3	0	0	0	0	multi-exon	FALSE	canonical	3	10574	junction_1	310	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGGAATCACATACTGGA	NA	False	NA	NA	False	NA	NA	NA	135780017	135777943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135778614_135778924_135779032_135779877
ENSMUST00000142519.3	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000142550.8	chr11	-	1403	8	FSM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_5	29.2665442484229	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	500	False	NA	-6	True	AATAAA	-16	NA	116029601	116022646	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
ENSMUST00000142643.2	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780
ENSMUST00000142669.8	chr2	-	2424	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068441	30063464	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
ENSMUST00000142704.8	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_1	36.8929090028677	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ENSMUST00000142712.2	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_23112319_23112722
ENSMUST00000142735.8	chr4	+	581	4	FSM	ENSMUSG00000028936.16	ENSMUST00000142735.8	581	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	12465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCGGTGGTTTATCCTT	NA	False	NA	12	True	AATAAA	-11	NA	152410198	152416933	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000142768.8	chr2	-	862	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGTTGTGTCTCTTT	NA	False	NA	-121	True	NA	NA	NA	73741626	73739074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUST00000142779.8	chr5	-	2008	8	FSM	ENSMUSG00000023452.20	ENSMUST00000142779.8	2008	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	261.322148518112	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942929	32893644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_32894799_32895329_32895377_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUST00000142788.8	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
ENSMUST00000142796.8	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946829	61943988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_61944903_61945662_61945792_61946737
ENSMUST00000142822.4	chr8	-	975	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489988	65481068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
ENSMUST00000142861.2	chr2	+	1460	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGAGG	2209	False	NA	NA	False	AAAAAG	-43	NA	126912584	126929790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
ENSMUST00000143044.2	chr9	+	566	4	FSM	ENSMUSG00000036781.14	ENSMUST00000143044.2	566	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5436.29598164044	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTCCCTCTGCTTCTCT	NA	False	NA	34	True	AATAAA	-18	NA	66853636	66856798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_66853795_66854112_66854222_66854868_66854980_66856610
ENSMUST00000143085.8	chr7	+	2963	17	FSM	ENSMUSG00000035632.17	ENSMUST00000143085.8	2963	17	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	81.2505528827343	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCCTCTCCTATCC	2750	False	NA	NA	False	AATAAA	-22	NA	3648288	3664107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUST00000143107.2	chr7	+	1158	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	6014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	False	NA	20	True	AATAAA	-24	NA	109118353	109121574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUST00000143231.2	chr7	+	827	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2940	False	NA	NA	False	AAAAAG	-2	NA	3632990	3634420	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3633056_3633556_3633742_3633843
ENSMUST00000143260.2	chr13	-	2509	5	FSM	ENSMUSG00000074863.6	ENSMUST00000143260.2	2509	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	116.358014335068	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTATGGGTGCATATTT	5491	False	NA	-4	True	ATTAAA	-17	NA	62874503	62847219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62849306_62853514_62853576_62853943_62854071_62871911_62872032_62874388
ENSMUST00000143587.3	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	2197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
ENSMUST00000143961.2	chr17	+	614	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135325	13137266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929
ENSMUST00000144093.8	chr2	-	2010	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068471	30063484	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
ENSMUST00000144166.8	chr4	+	326	3	FSM	ENSMUSG00000085525.8	ENSMUST00000144166.8	326	3	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_2	93	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206900	146215004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_146207052_146209452_146209546_146214922
ENSMUST00000144236.9	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573332	87562085	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
ENSMUST00000145118.8	chr12	-	4427	19	FSM	ENSMUSG00000052593.17	ENSMUST00000145118.8	4427	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	37.6614630951738	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423594	21373517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379157_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
ENSMUST00000145276.8	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUST00000145477.8	chrX	-	1540	10	FSM	ENSMUSG00000071708.12	ENSMUST00000145477.8	1540	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	195.70127146833	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275062	156228691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUST00000145559.8	chr7	+	578	4	FSM	ENSMUSG00000019738.16	ENSMUST00000145559.8	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	50.6776303927307	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTAGTGTTTCCCGTGT	NA	False	NA	11	True	AATAAA	-11	NA	29931766	29932808	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29931962_29932174_29932407_29932491_29932544_29932709
ENSMUST00000145593.8	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUST00000145634.9	chr18	+	1538	8	FSM	ENSMUSG00000025421.16	ENSMUST00000145634.9	1538	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031839	77059101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77031882_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUST00000145795.2	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132260699_132260792
ENSMUST00000145959.8	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ENSMUST00000146010.3	chr18	+	430	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	24	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33927944	33929039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_33928178_33928435_33928499_33928905
ENSMUST00000146089.8	chr2	+	750	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3436	False	NA	1	True	AATAAA	-17	NA	180829139	180830297	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ENSMUST00000146280.2	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_40960690_40963055_40963268_40964580
ENSMUST00000146474.8	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
ENSMUST00000146511.8	chr5	+	1298	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTTCCGTCGT	NA	False	NA	23	True	ATTAAA	-23	NA	146885466	146892424	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
ENSMUST00000146736.8	chr15	-	698	9	FSM	ENSMUSG00000022487.15	ENSMUST00000146736.8	698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.4303026825177	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	9270	False	NA	-2	True	AGTAAA	-16	NA	103337989	103310887	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103337939
ENSMUST00000146749.2	chr13	-	1592	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTAAAGTGTATATGA	2370	False	NA	NA	False	AATAAA	-18	NA	81781260	81727159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUST00000146867.2	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	2	95	junction_4	4232.31002970009	46707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6378	False	NA	0	True	AATAAA	-19	NA	24939224	24940899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
ENSMUST00000146927.2	chr7	+	813	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	3092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1635	False	NA	0	True	AATAAA	-15	NA	3707362	3709893	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
ENSMUST00000146980.2	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135490826	135493983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
ENSMUST00000147114.2	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUST00000147117.8	chr16	+	1947	10	FSM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACCAAAAAAAGTTTGT	6049	False	NA	NA	False	AATAAA	-13	NA	22926503	22932886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000147148.5	chr5	+	922	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	5	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_53424701_53434484_53434542_53435238
ENSMUST00000147165.8	chr4	+	1964	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
ENSMUST00000147196.3	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	False	NA	-12	True	AATAAA	-17	NA	43416964	43401128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
ENSMUST00000147407.2	chr13	-	534	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	1802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476571	73467997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
ENSMUST00000147425.2	chr2	+	1381	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424777	119431227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUST00000147435.8	chr7	+	778	5	FSM	ENSMUSG00000012848.16	ENSMUST00000147435.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7593.8368883918	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTCAGGGCATACCACT	NA	False	NA	NA	False	NA	NA	NA	12656244	12660421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_12656476_12656899_12657009_12659318_12659529_12659663_12659793_12660322
ENSMUST00000147452.2	chr4	+	781	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	352	False	NA	4	True	AATAAA	-15	NA	124696374	124699171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_124696437_124698452
ENSMUST00000147543.2	chr16	-	678	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	91	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38337233_38338728_38338895_38342702
ENSMUST00000147630.2	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
ENSMUST00000147632.3	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	False	NA	22	True	AATAAA	-22	NA	34346946	34362156	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_34347233_34350043_34350120_34361963
ENSMUST00000147688.8	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
ENSMUST00000147742.9	chrX	-	1991	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUST00000147762.9	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478779	6475590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
ENSMUST00000147782.2	chr11	-	565	2	FSM	ENSMUSG00000020460.16	ENSMUST00000147782.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	16484	junction_1	0	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29496671	29495845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29496030_29496290
ENSMUST00000147820.2	chr2	+	599	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661037	175671684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
ENSMUST00000148088.2	chr9	+	676	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGGAACACGACCAGCC	NA	False	NA	11	True	AATAAA	-11	NA	22068241	22069621	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_22068324_22069027
ENSMUST00000148223.8	chr4	-	845	4	FSM	ENSMUSG00000036078.17	ENSMUST00000148223.8	845	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	233.709696465984	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATACTCCAGGGGGCCAG	34	False	NA	NA	False	NA	NA	NA	41745072	41739100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41745001
ENSMUST00000148235.8	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	False	NA	NA	False	AATAAA	-32	NA	117648194	117615423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUST00000148330.8	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ENSMUST00000148381.3	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUST00000148403.2	chr7	+	343	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	273	False	NA	22	True	AATAAA	-24	NA	3620389	3623162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
ENSMUST00000148460.8	chr2	+	2088	5	FSM	ENSMUSG00000005804.15	ENSMUST00000148460.8	2088	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	54.4443523241851	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCTGGCGATTCTTTT	8285	False	NA	4	True	AATAAA	-16	NA	122580438	122590019	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_122580625_122584508_122584651_122586049_122586134_122587974_122588062_122588430
ENSMUST00000148482.8	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ENSMUST00000148573.2	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85640158_85647022_85647134_85648675
ENSMUST00000148592.2	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85807908_85808405_85808504_85808574
ENSMUST00000148629.2	chr2	+	481	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	10683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899171	179900235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
ENSMUST00000148721.8	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
ENSMUST00000148807.11	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4390	False	NA	NA	False	AATAAA	-24	NA	4175978	4181734	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000148894.2	chr17	+	1672	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471972	26499697	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000148966.2	chr16	+	2315	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGATTTGGGTATTGTCA	521	False	NA	9	True	NA	NA	NA	13758558	13766446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
ENSMUST00000148968.8	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149241957
ENSMUST00000149085.8	chr5	-	2552	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650185	24646037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
ENSMUST00000149105.2	chr8	+	2093	11	FSM	ENSMUSG00000002342.18	ENSMUST00000149105.2	2093	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.1644841919278	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCAGTGTGGTCTGGCCC	7764	False	NA	24	True	AATAAA	-34	NA	70626952	70635517	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630176_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUST00000149205.2	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUST00000149267.8	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUST00000149277.8	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220949	36208503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000149322.8	chr9	-	2188	14	FSM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	26.8991102116318	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916930	100864084	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
ENSMUST00000149330.8	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
ENSMUST00000149566.2	chr1	-	838	6	FSM	ENSMUSG00000043716.14	ENSMUST00000149566.2	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	2771.11529893651	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCAACAGGGAAGACC	NA	False	NA	NA	False	AAAAAG	-27	NA	16174451	16172003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
ENSMUST00000149615.8	chr2	-	542	3	FSM	ENSMUSG00000009549.15	ENSMUST00000149615.8	542	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	715	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTGGTTTGTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	118309364	118306331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_118306789_118307307_118307341_118309312
ENSMUST00000149689.2	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
ENSMUST00000149719.8	chr2	-	3303	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGTTGAAATTATTTC	NA	False	NA	-22	True	AATAAA	-12	NA	22930253	22830097	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUST00000149755.9	chr4	-	708	6	FSM	ENSMUSG00000028772.20	ENSMUST00000149755.9	708	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_5	114.074361711999	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAAAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	130238652	130210487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130238498
ENSMUST00000149760.8	chr1	+	1040	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
ENSMUST00000149778.2	chr5	+	1475	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038559	135041024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135038972_135039740_135040520_135040740
ENSMUST00000149796.2	chr4	-	1803	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170828	155158566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUST00000149822.3	chr11	+	600	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	875	False	NA	20	True	AATAAA	-16	NA	116967608	116969781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116968029_116969601
ENSMUST00000149936.2	chr9	+	3158	4	FSM	ENSMUSG00000015656.18	ENSMUST00000149936.2	3158	4	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_2	5585.07877195021	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTTGTCCTGACTGAG	2459	False	NA	9	True	AATAAA	-19	NA	40712571	40716495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269
ENSMUST00000149985.8	chrX	+	1883	4	FSM	ENSMUSG00000031207.17	ENSMUST00000149985.8	1883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_3	48.6095555306659	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95139662	95197645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
ENSMUST00000150050.3	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15630183_15631328_15631478_15632369
ENSMUST00000150103.3	chr17	+	1022	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	2108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547573	28550002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
ENSMUST00000150165.8	chr2	-	975	4	FSM	ENSMUSG00000026939.13	ENSMUST00000150165.8	975	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	9.10433352249844	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25511975	25510115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619
ENSMUST00000150268.8	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	False	NA	7	True	AATAAA	-40	NA	82962828	82979662	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUST00000150280.3	chr17	-	995	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGAGAAGTGGGAATCT	NA	False	NA	NA	False	NA	NA	NA	26314459	26312370	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26313245_26314338
ENSMUST00000150350.9	chr7	-	1047	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	0	0	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	24945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	False	NA	-1	True	AATAAA	-19	NA	44778185	44774981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000150371.8	chr14	-	2494	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	3757	False	NA	-6	True	AATAAA	-19	NA	54891139	54879623	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
ENSMUST00000150459.3	chr10	+	1194	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558728	83598626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUST00000150485.2	chr4	+	576	4	FSM	ENSMUSG00000028936.16	ENSMUST00000150485.2	576	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2633.7473092324	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152411936	152416930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152412043_152413716_152413871_152414463_152414586_152416736
ENSMUST00000150571.2	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166867733	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
ENSMUST00000150576.8	chr9	+	733	4	FSM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	0	0	0	0	multi-exon	FALSE	canonical	3	2142	junction_1	1217.38161642108	10859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306652	106308767	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_106306776_106307168_106307214_106307506_106307572_106308267
ENSMUST00000150739.2	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
ENSMUST00000150745.9	chr2	+	3627	5	FSM	ENSMUSG00000027405.17	ENSMUST00000150745.9	3627	5	0	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	249.795291188605	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTATTTTGTTTATT	NA	False	NA	30	True	AATAAA	-19	NA	130116363	130121232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130118095_130118355
ENSMUST00000150749.2	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	7927	False	NA	-16	True	AATAAA	-21	NA	64729818	64719029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_64719545_64729622
ENSMUST00000150826.9	chr9	+	2939	8	FSM	ENSMUSG00000034563.17	ENSMUST00000150826.9	2939	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	12.4638252063927	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTGCTTTCTGATGTC	NA	False	NA	NA	False	NA	NA	NA	72892859	72921220	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
ENSMUST00000150844.3	chr7	-	3564	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGATTTGTGTGTTTGA	NA	False	NA	-4	True	AATAAA	-32	NA	119393281	119383053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUST00000150971.8	chr1	+	877	8	FSM	ENSMUSG00000025903.15	ENSMUST00000150971.8	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_6	40.2700070696263	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4878052	4911509	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
ENSMUST00000151118.2	chr11	-	728	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	15365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
ENSMUST00000151120.9	chr7	-	2127	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	0	0	0	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGCTCTGTACTGT	8684	False	NA	-2	True	AATAAA	-23	NA	141941775	141929647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUST00000151163.2	chr2	+	746	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721214	109727083	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
ENSMUST00000151254.2	chr7	+	1430	5	FSM	ENSMUSG00000030663.13	ENSMUST00000151254.2	1430	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	766.33690371794	2111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692600	115704445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
ENSMUST00000151258.8	chr7	-	1440	12	FSM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	85.8415800151892	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958735	97865649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97879656_97879821_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ENSMUST00000151266.8	chr16	+	1086	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTTCCTAGTGACTCT	NA	False	NA	30	True	AATAAA	-36	NA	17884266	17889227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUST00000151287.8	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	7412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUST00000151374.2	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	490.5	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132079555_132079930_132080010_132080907
ENSMUST00000151488.2	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
ENSMUST00000151524.9	chr13	-	3747	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283592	77191206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUST00000151559.2	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	2654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_4652221_4653903_4653990_4654156
ENSMUST00000151624.2	chr9	+	1112	7	FSM	ENSMUSG00000032076.21	ENSMUST00000151624.2	1112	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	18.6904610251682	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCAGTTGGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	47441670	47725352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070
ENSMUST00000151698.8	chr4	+	2600	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
ENSMUST00000151911.9	chrX	+	3903	6	FSM	ENSMUSG00000031381.17	ENSMUST00000151911.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	95.333939392013	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_163202837_163205579_163206669_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUST00000151969.8	chr4	+	875	6	FSM	ENSMUSG00000028797.21	ENSMUST00000151969.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	309.843831631356	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCGCACG	3183	False	NA	NA	False	NA	NA	NA	129494479	129501530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495987_129496055_129500879_129500973_129501248
ENSMUST00000152075.8	chr1	+	1038	9	FSM	ENSMUSG00000026418.17	ENSMUST00000152075.8	1038	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.2898077169369	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7353	False	NA	43	True	ATTAAA	-24	NA	135727158	135738727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_135727235_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUST00000152105.8	chr5	+	585	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239974	148250270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUST00000152233.9	chr1	+	2739	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	0	0	0	0	multi-exon	TRUE	canonical	2	42	junction_4	25.5582124222768	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUST00000152391.9	chr6	-	1673	10	FSM	ENSMUSG00000039130.19	ENSMUST00000152391.9	1673	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	369.85085415744	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGCTGCTAGAGAATTG	12	True	NA	-11	True	AATAAA	-14	NA	30391001	30366382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373357_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
ENSMUST00000152459.8	chr9	+	1784	12	FSM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	125.413102509234	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGCTGTTTGACACCT	NA	False	NA	3	True	AAAACA	-21	NA	47441508	47761885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47748014_47748069_47759464_47759597_47761569
ENSMUST00000152528.2	chr19	+	1735	5	FSM	ENSMUSG00000024791.11	ENSMUST00000152528.2	1735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	197.768014350147	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135856	6141807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6135886_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000152608.8	chr2	-	1654	10	FSM	ENSMUSG00000027108.16	ENSMUST00000152608.8	1654	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	135.509008401747	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGTTTGGGGA	NA	False	NA	-3	True	AATAAA	-16	NA	73044770	72923543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73044629
ENSMUST00000152634.8	chr13	+	2095	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295287	108331519	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUST00000152665.3	chr17	+	901	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	11804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547559	28550001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000152700.8	chr11	+	854	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628377	87634449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
ENSMUST00000152704.8	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	10061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUST00000152730.4	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_37210700_37211950_37211997_37218618
ENSMUST00000152804.9	chr18	+	445	3	FSM	ENSMUSG00000046727.14	ENSMUST00000152804.9	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	356.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGACCAATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	36481826	36526423	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36481870_36499567_36499795_36526248
ENSMUST00000152901.8	chr3	-	2357	9	FSM	ENSMUSG00000027669.15	ENSMUST00000152901.8	2357	9	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_7	7.72981241687015	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTACTTTTCCATTTT	NA	False	NA	-2	True	TATAAA	-16	NA	32670674	32638146	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_32639376_32641709_32641927_32643857_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
ENSMUST00000152943.8	chr4	-	437	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080997	132079243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_132079555_132079973_132080010_132080907
ENSMUST00000152979.8	chr11	+	3976	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5261	False	NA	21	True	AATAAA	-21	NA	68906911	68927299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000153008.8	chr2	+	765	4	FSM	ENSMUSG00000015092.10	ENSMUST00000153008.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	3	2578	junction_3	170.755836080515	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTCTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	25447882	25451373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980
ENSMUST00000153056.8	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
ENSMUST00000153065.8	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
ENSMUST00000153073.8	chr11	-	2061	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ENSMUST00000153146.9	chr8	+	801	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	259	False	NA	16	True	AATAAA	-18	NA	106052993	106055687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
ENSMUST00000153157.8	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
ENSMUST00000153185.8	chr11	+	1578	6	FSM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	71.7568115233669	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7809	False	NA	21	True	AATAAA	-21	NA	101355824	101362679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101355971_101356456_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUST00000153187.8	chr16	-	2922	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6266	False	NA	-4	True	NA	NA	NA	38370584	38345501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ENSMUST00000153341.8	chr8	+	960	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617994	3628597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3618097_3623120_3623222_3627840
ENSMUST00000153360.8	chr18	-	2498	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ENSMUST00000153442.8	chr5	-	2374	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186728	100182579	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUST00000153474.9	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUST00000153510.9	chr11	+	1887	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUST00000153512.2	chr15	-	738	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	4696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	403	False	NA	-5	True	AATAAA	-18	NA	35937791	35932125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_35932244_35935430_35935560_35937300
ENSMUST00000153514.8	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
ENSMUST00000153609.8	chr7	+	1248	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	0	0	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	2213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTGTGTATCTGCA	NA	False	NA	23	True	AATAAA	-23	NA	65710085	65724335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
ENSMUST00000153627.8	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99850795	99921478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000153655.8	chr2	-	2484	11	FSM	ENSMUSG00000039671.19	ENSMUST00000153655.8	2484	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	203.909293559661	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165717697	165669048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165694787_165694800_165717624
ENSMUST00000153674.8	chr8	-	884	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452904	46449947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
ENSMUST00000153766.8	chr4	+	1377	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696419	115731067	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
ENSMUST00000153892.2	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
ENSMUST00000154030.8	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
ENSMUST00000154032.2	chr15	-	2456	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044669	102024962	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
ENSMUST00000154169.4	chr5	-	3241	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGTCTGCTAATCT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUST00000154207.8	chr9	-	859	5	FSM	ENSMUSG00000037742.15	ENSMUST00000154207.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	5371.55305172536	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGGATGTCTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	78396433	78386930	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78396355
ENSMUST00000154219.8	chr3	+	1945	13	FSM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_3	220.750408958977	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433476	58464922	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUST00000154241.8	chr5	-	1724	8	FSM	ENSMUSG00000107283.4	ENSMUST00000154241.8	1724	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_7	57.209960599853	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTTTAGCAGTTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	31311595	31297997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000154340.8	chr2	+	1417	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5811	False	NA	24	True	AATAAA	-23	NA	32851740	32854057	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
ENSMUST00000154469.8	chr5	+	1473	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	0	0	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038309	135041024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUST00000154490.8	chr2	+	860	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825439	29828967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_29825611_29826021_29826250_29828506
ENSMUST00000154548.8	chr5	-	1080	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053339	77044088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ENSMUST00000154550.8	chr8	+	1000	8	FSM	ENSMUSG00000002395.15	ENSMUST00000154550.8	1000	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	297.542656862947	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000154553.2	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUST00000154596.2	chr2	+	826	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_2	23	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTGCCTCCAGCTG	NA	False	NA	6	True	AATAAA	-18	NA	155118808	155119988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_155118934_155119017_155119125_155119394
ENSMUST00000154853.8	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228703	97199546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
ENSMUST00000155364.8	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
ENSMUST00000155387.8	chr16	+	1415	4	FSM	ENSMUSG00000003531.16	ENSMUST00000155387.8	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	154.861228201251	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGCAGAGGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	17884311	17889496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17884721_17887287_17887389_17887945_17888096_17888741
ENSMUST00000155399.2	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUST00000155480.9	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	2558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21467589	21440332	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUST00000155592.8	chr7	-	1091	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUST00000155611.8	chr16	-	1468	7	FSM	ENSMUSG00000003166.21	ENSMUST00000155611.8	1468	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	165.862392763801	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709513	17667174	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
ENSMUST00000155672.8	chr7	+	1938	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	False	NA	17	True	AATAAA	-31	NA	138448323	138484783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUST00000155677.8	chr8	-	639	6	FSM	ENSMUSG00000055553.17	ENSMUST00000155677.8	639	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	323.170543212094	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCCCACCCAGTATCACC	NA	False	NA	NA	False	NA	NA	NA	70975830	70966776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_70966819_70967244_70967399_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000155805.2	chr7	+	518	4	FSM	ENSMUSG00000037563.16	ENSMUST00000155805.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_2	895.518844022838	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050348	28052121	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUST00000155837.8	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUST00000155873.3	chr4	-	622	5	FSM	ENSMUSG00000059291.16	ENSMUST00000155873.3	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	4504.49472749164	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGCCGATTGTCCCACG	NA	False	NA	NA	False	NA	NA	NA	135780401	135777590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
ENSMUST00000155965.2	chr11	+	473	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024327	94046602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
ENSMUST00000156212.8	chrX	+	2368	9	FSM	ENSMUSG00000009995.18	ENSMUST00000156212.8	2368	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	93.7382492635744	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331946_73332056_73332626_73332710_73332789_73332904
ENSMUST00000156218.2	chr10	-	2124	4	FSM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	59.275252471462	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATTTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060687	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82062428_82063278_82063426_82063632_82063760_82077004
ENSMUST00000156260.2	chr10	+	401	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGACACAGCAGACATG	NA	False	NA	NA	False	AATAAA	-14	NA	81245408	81247413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81245600_81247203
ENSMUST00000156291.2	chr19	-	2373	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	414.5	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	1929	False	NA	NA	False	AATAAA	-20	NA	10181533	10176495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10178462_10181051_10181384_10181458
ENSMUST00000156299.8	chrX	-	2080	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	0	0	0	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ENSMUST00000156374.9	chr4	-	1909	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUST00000156473.8	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266159	100141391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000156503.2	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_53319978_53321481
ENSMUST00000156529.8	chr7	+	2034	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	594	False	NA	16	True	AATAAA	-23	NA	101872234	101887774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000156970.8	chr8	+	1708	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583648	85595885	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000157063.2	chr10	+	722	8	FSM	ENSMUSG00000020153.15	ENSMUST00000157063.2	722	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_2	732.821330230511	1602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTCTGTGTGGACT	9725	False	NA	25	True	AATAAA	-16	NA	80085318	80092628	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80085326_80088230_80088268_80088912_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUST00000158630.3	chr17	-	128	1	FSM	ENSMUSG00000089255.3	ENSMUST00000158630.3	128	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCGACTCTGCTGCCCC	4463	False	NA	NA	False	NA	NA	NA	24938777	24938649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24938600_24938800
ENSMUST00000159018.8	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077217	145084884	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000159209.8	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291099	99306416	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000159634.8	chr19	+	1684	12	FSM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8815092	8826031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUST00000159663.8	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ENSMUST00000159693.2	chr19	-	705	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781760	5780334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
ENSMUST00000159890.8	chr1	+	1066	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862757	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000159917.8	chr10	-	2491	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUST00000160047.8	chr3	+	1196	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
ENSMUST00000160052.2	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	False	NA	NA	False	AATAAA	-43	NA	37164217	37164661	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_37164200_37164700
ENSMUST00000160075.2	chr5	+	928	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077224	145084881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000160180.9	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	871	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	False	NA	19	True	AATATA	-24	NA	84869462	84897996	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUST00000160226.8	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_102070850_102072670_102072804_102074153
ENSMUST00000160271.8	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUST00000160337.2	chr10	+	1138	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490727	72504997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ENSMUST00000160372.9	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237959
ENSMUST00000160405.8	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ENSMUST00000160429.8	chr1	+	759	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000160439.8	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000160507.8	chr14	+	2229	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGAGTTATGGGTTTT	NA	False	NA	11	True	AATAAA	-14	NA	73790104	73833582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUST00000160683.8	chr12	+	1027	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	3534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4770	False	NA	1	True	ATTAAA	-12	NA	71021444	71041275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000160853.8	chr15	+	1651	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235493	76238573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000160874.8	chr9	+	412	5	FSM	ENSMUSG00000084786.10	ENSMUST00000160874.8	412	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	478.321740567999	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556130	20558071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556790_20556917_20556956_20557911
ENSMUST00000161011.8	chr12	-	1000	9	FSM	ENSMUSG00000021189.12	ENSMUST00000161011.8	1000	9	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.5380238253514	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATTTTGTCTGTTTATA	NA	False	NA	-2	True	ATTAAA	-19	NA	101924502	101899184	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUST00000161012.8	chr17	-	1665	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9333	False	NA	-5	True	AATAAA	-20	NA	35827721	35823630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
ENSMUST00000161021.2	chr3	-	818	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102074246	102065495	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
ENSMUST00000161137.8	chr3	-	1927	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	0	0	0	0	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGCTATAAGACAATT	NA	False	NA	-11	True	ATTAAA	-13	NA	75464163	75423796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUST00000161198.4	chr6	-	1021	2	FSM	ENSMUSG00000057103.12	ENSMUST00000161198.4	1021	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAATGCATGTGATGGCT	9864	False	NA	NA	False	NA	NA	NA	85892669	85887135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85888003_85892515
ENSMUST00000161211.8	chr12	-	1059	8	FSM	ENSMUSG00000002679.15	ENSMUST00000161211.8	1059	8	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTCCCTTGTCTCTGA	NA	False	NA	1	True	AATAAA	-25	NA	81641780	81620330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
ENSMUST00000161229.8	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000161410.8	chr12	-	2764	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108859124	108825955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
ENSMUST00000161461.8	chr1	+	793	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862747	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000161527.8	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000161576.8	chr8	+	1952	8	FSM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_6	55.7864002152818	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCAAGCTTGCTGTGTCT	NA	False	NA	47	True	AATAAA	-40	NA	95113065	95122005	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUST00000161639.8	chr13	+	3157	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274485	97312959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ENSMUST00000161712.8	chr12	-	2154	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490606	87474849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ENSMUST00000161739.8	chr6	-	3893	15	FSM	ENSMUSG00000040669.15	ENSMUST00000161739.8	3893	15	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_10	176.752392241987	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCATTGTCTTACTGCA	9076	False	NA	-19	True	ATTAAA	-34	NA	122316617	122294696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ENSMUST00000161892.2	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_82230422_82232100_82232242_82233043
ENSMUST00000162004.8	chr19	-	2847	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTGTGTGTGTACA	NA	False	NA	88	True	NA	NA	NA	42768417	42743543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUST00000162099.8	chr6	-	2580	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	7	False	NA	-2	True	AATAAA	-18	NA	29216341	29200436	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
ENSMUST00000162117.3	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
ENSMUST00000162163.8	chr1	+	1614	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862753	160866109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000162183.8	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	9244	False	NA	0	True	AATAAA	-17	NA	88703521	88689446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUST00000162247.8	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490598	87474846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ENSMUST00000162303.8	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000162360.8	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	3891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
ENSMUST00000162364.8	chr1	+	2840	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	13	True	CATAAA	-13	NA	55170389	55194058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUST00000162413.9	chr16	-	1687	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUST00000162466.8	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUST00000162503.8	chr15	+	2040	15	FSM	ENSMUSG00000022550.19	ENSMUST00000162503.8	2040	15	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_10	17.9268638913668	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3102	False	NA	NA	False	AAGAAA	-1	NA	76460557	76480016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ENSMUST00000162558.8	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	TRUE	canonical	3	1206	junction_7	1656.43137771865	4376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000162594.8	chr5	+	867	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077171	145084888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000162787.9	chr4	-	2408	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059469	108919275	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUST00000162789.9	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
ENSMUST00000162811.2	chr11	-	2788	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3044	False	NA	-9	True	AATAAA	-16	NA	20199429	20188386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_20190699_20191885_20192239_20199306
ENSMUST00000162834.3	chr15	-	1982	9	FSM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	535.950499113491	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83054378	83037694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83054337
ENSMUST00000163085.8	chr10	-	1132	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7539025	7513493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUST00000163140.2	chr8	-	807	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCTTAGCGTCTCTCA	NA	False	NA	-3	True	AATAAA	-25	NA	105368331	105366472	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
ENSMUST00000163147.8	chr1	-	3370	25	FSM	ENSMUSG00000026383.15	ENSMUST00000163147.8	3370	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.0580754034102	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576664	119475860	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527992_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUST00000163168.9	chr6	+	2401	3	FSM	ENSMUSG00000042079.14	ENSMUST00000163168.9	2401	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	255	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3788	False	NA	NA	False	AATAAA	-14	NA	117883809	117902580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117884170_117894430_117894560_117900668
ENSMUST00000163242.3	chr15	+	1937	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUST00000163311.9	chr7	-	1288	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895185	26886431	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ENSMUST00000163329.2	chr9	+	1364	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUST00000163352.9	chr16	+	391	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892449	35912329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
ENSMUST00000163377.10	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128583868_128601015_128601110_128601478
ENSMUST00000163399.8	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ENSMUST00000163506.3	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ENSMUST00000163528.8	chr1	-	3413	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078800	183057917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
ENSMUST00000163530.8	chr3	-	2157	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	0	0	0	0	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
ENSMUST00000163558.3	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUST00000163600.8	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUST00000163602.9	chr10	-	1609	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369626	79362263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
ENSMUST00000163654.8	chr7	+	781	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262749	30264787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUST00000163666.3	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	8908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUST00000163668.3	chr2	-	1733	11	FSM	ENSMUSG00000026860.17	ENSMUST00000163668.3	1733	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	145.180714972754	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249301	30234822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000163717.2	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	913	False	NA	NA	False	AATAAA	-18	NA	24633648	24644869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000163812.9	chr7	+	3026	14	FSM	ENSMUSG00000038943.17	ENSMUST00000163812.9	3026	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_13	239.092317096712	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944197	79966007	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
ENSMUST00000163837.2	chr8	-	1272	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	1729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321058	84298328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
ENSMUST00000163869.2	chr8	+	1467	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43636155	43646918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000163889.3	chr14	-	1886	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959720	55953781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
ENSMUST00000163946.2	chr4	-	762	3	FSM	ENSMUSG00000078570.11	ENSMUST00000163946.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7655	False	NA	-2	True	ATTAAA	-21	NA	124744523	124743277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUST00000163949.9	chr6	+	2561	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-3	True	NA	13	True	AATAAA	-19	NA	30738048	30748461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ENSMUST00000164083.4	chr10	+	1473	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGGTCTGTGCACG	NA	False	NA	28	True	AATAAA	-18	NA	59839148	59935810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUST00000164088.8	chr10	-	2618	14	FSM	ENSMUSG00000020166.16	ENSMUST00000164088.8	2618	14	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	135.006640204874	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116385068	116321069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937
ENSMUST00000164181.2	chr10	-	665	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	3496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTCTTTCTTTCTTTC	8224	False	NA	-4	True	AATAAA	-21	NA	128329744	128326728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000164199.8	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245597	128237263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
ENSMUST00000164342.10	chr17	-	2559	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ENSMUST00000164359.8	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	6572	False	NA	-9	True	AATAAA	-26	NA	69811911	69807539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
ENSMUST00000164470.3	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
ENSMUST00000164532.3	chr15	-	1770	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	8739	False	NA	-4	True	AATAAA	-22	NA	63869818	63802790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
ENSMUST00000164542.8	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
ENSMUST00000164553.8	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3341816_3345237
ENSMUST00000164589.9	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855659	28851934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUST00000164655.2	chr14	-	2843	8	FSM	ENSMUSG00000060373.16	ENSMUST00000164655.2	2843	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	1536.09765314579	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATAGTTGGTATATACA	8725	False	NA	-34	True	AATAAA	-19	NA	52341485	52310836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321874_52341345
ENSMUST00000164659.8	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000164688.2	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	3286	False	NA	10	True	AATAAA	-13	NA	102368517	102371211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102368582_102368804_102369155_102370605
ENSMUST00000164744.8	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ENSMUST00000164791.8	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	2866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000164807.2	chr8	+	1175	5	FSM	ENSMUSG00000005161.16	ENSMUST00000164807.2	1175	5	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_2	252.757171015977	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATAGGGGT	NA	False	NA	NA	False	NA	NA	NA	85696867	85701289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000164868.8	chr14	+	1864	8	FSM	ENSMUSG00000021906.15	ENSMUST00000164868.8	1864	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	99.0186541897587	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807767	31825159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821490_31821589_31822911_31823052_31824213
ENSMUST00000164916.9	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892054	35912490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUST00000164924.8	chr7	+	1957	10	FSM	ENSMUSG00000025509.16	ENSMUST00000164924.8	1957	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	33.2714239899796	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCATGTTACCCTTGC	9976	False	NA	28	True	AATAAA	-29	NA	141035141	141040016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141035387_141036480_141036563_141037185_141037419_141037504_141037571_141037996_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUST00000164957.8	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
ENSMUST00000165007.9	chr17	-	1954	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTCCTATTTCTGGC	NA	False	NA	-3	True	TATAAA	-14	NA	46991840	46985478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
ENSMUST00000165015.9	chr14	+	1619	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	100	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835695	61843395	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_61835796_61837242_61837345_61841978
ENSMUST00000165017.2	chr19	+	3634	13	FSM	ENSMUSG00000015176.12	ENSMUST00000165017.2	3634	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTCAGAGTTATGTC	137	False	NA	11	True	AATAAA	-14	NA	46064301	46073967	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000165096.9	chr7	-	2837	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613793	126586031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ENSMUST00000165306.3	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	14	True	AATAAA	-14	NA	35340458	35343790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35340775_35342028_35342636_35343195
ENSMUST00000165307.8	chr3	+	3274	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	0	0	0	0	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	1418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836557	95854702	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000165392.8	chr6	-	1643	4	FSM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.0636362518253	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874778	134846055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_134847407_134864592_134864749_134874124_134874177_134874694
ENSMUST00000165485.8	chr19	+	1557	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524715	5531881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUST00000165532.3	chr9	+	1009	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	8985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120400509	120403720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUST00000165630.3	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760332	75796749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUST00000165721.8	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ENSMUST00000165740.9	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	1748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321113	84298328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
ENSMUST00000165806.8	chr10	+	1775	11	FSM	ENSMUSG00000019794.14	ENSMUST00000165806.8	1775	11	0	0	0	0	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601763	7638914	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
ENSMUST00000165842.3	chr3	+	1562	4	FSM	ENSMUSG00000028102.16	ENSMUST00000165842.3	1562	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	131.995791178692	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96543148	96552042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_96543241_96543989_96544106_96544446_96544649_96550890
ENSMUST00000165953.3	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000166010.2	chrX	-	1318	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879539	149872476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
ENSMUST00000166021.8	chr3	+	1768	9	FSM	ENSMUSG00000028069.17	ENSMUST00000166021.8	1768	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTGTTTTGTTTTTGA	1719	False	NA	39	True	TTTAAA	-28	NA	87950414	87963300	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUST00000166078.9	chr8	-	2234	15	FSM	ENSMUSG00000031575.19	ENSMUST00000166078.9	2234	15	0	0	0	0	multi-exon	FALSE	canonical	3	3119	junction_12	186.608342443171	2969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330110	26306897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
ENSMUST00000166099.3	chr5	+	1101	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCAGTGGGACAT	1204	False	NA	26	True	AATAAA	-18	NA	137639698	137641164	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUST00000166120.9	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	-19	True	AATAAA	-12	NA	71183422	71169947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
ENSMUST00000166192.7	chr6	-	3155	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873729	30748410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ENSMUST00000166223.2	chr15	-	1908	16	FSM	ENSMUSG00000022464.15	ENSMUST00000166223.2	1908	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	409.635849125646	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCGTGCAGTGCAGTGTG	NA	False	NA	-9	True	ATTAAA	-26	NA	96918203	96894645	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96918183
ENSMUST00000166291.8	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
ENSMUST00000166407.9	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	2121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000166411.8	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	2062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691905	69702190	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000166497.9	chr14	-	2226	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCAACACCCAGGTA	NA	False	NA	NA	False	AATAAA	-13	NA	14466871	14413009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUST00000166498.8	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
ENSMUST00000166518.8	chrX	+	800	6	FSM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	165.944569058466	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACGGGGCTCCTGTGT	5432	False	NA	46	True	AATAAA	-28	NA	72830633	72834430	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000166526.9	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	1785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ENSMUST00000166627.8	chr17	+	1211	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000166693.3	chr17	-	271	4	FSM	ENSMUSG00000067288.14	ENSMUST00000166693.3	271	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9429.71906026662	2002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043450	34042025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34042068_34042166_34042305_34043272_34043321_34043407
ENSMUST00000166735.8	chr12	+	1033	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	0	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751015	105775968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ENSMUST00000166769.8	chr5	-	1878	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGCCTTTGTATCT	NA	False	NA	-1	True	AATAAA	-23	NA	31350483	31344902	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
ENSMUST00000166915.8	chr1	-	503	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	3772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	False	NA	-9	True	AATAAA	-30	NA	133538029	133531608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
ENSMUST00000167032.2	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ENSMUST00000167110.8	chr11	-	3547	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96714839	96708239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
ENSMUST00000167163.8	chr13	-	1654	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8372	False	NA	2	True	AATAAA	-28	NA	34120066	34101900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
ENSMUST00000167180.8	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717041	48724282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000167182.8	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	2254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117877300	117902582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
ENSMUST00000167199.3	chr19	+	1162	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	161	False	NA	NA	False	NA	NA	NA	11747754	11752324	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUST00000167256.8	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100788226_100790698_100790792_100791541
ENSMUST00000167264.8	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5234	False	NA	9	True	AATAAA	-13	NA	34222069	34267192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUST00000167316.8	chr5	+	4104	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGACTCTTTGTTTTGAG	1299	False	NA	16	True	NA	NA	NA	145168532	145184112	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
ENSMUST00000167361.8	chr7	+	860	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	185.966751472034	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262774	30264786	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000167399.2	chr16	+	1421	8	FSM	ENSMUSG00000022871.14	ENSMUST00000167399.2	1421	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	210.181845465457	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22740494	22758507	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22740626_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000167493.9	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	7992	False	NA	NA	False	ATTAAA	-14	NA	140752770	140740240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ENSMUST00000167525.3	chr8	-	1764	4	FSM	ENSMUSG00000063253.12	ENSMUST00000167525.3	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	125.913550590166	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAAGCTGTTTCAGAG	7417	False	NA	-23	True	TTTAAA	-29	NA	84169136	84161144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_84162670_84164181_84164263_84164613_84164686_84169050
ENSMUST00000167624.2	chr17	-	895	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTCTGGGCAGCAAG	NA	False	NA	-17	True	AATAAA	-19	NA	30831633	30811839	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUST00000167661.7	chr2	-	1151	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806480	26803394	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUST00000167662.8	chr17	+	2754	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTGTGACTCTGC	NA	False	NA	11	True	ATTAAA	-15	NA	26780462	26875905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUST00000167741.9	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	3595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
ENSMUST00000167816.8	chr12	+	2657	7	FSM	ENSMUSG00000040877.17	ENSMUST00000167816.8	2657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6713610367747	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_108860240_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUST00000167926.8	chr4	+	1505	9	FSM	ENSMUSG00000028937.15	ENSMUST00000167926.8	1505	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTAGGTGGTCATTTGTC	NA	False	NA	20	True	AATAAA	-25	NA	152270590	152356312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000167998.2	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110246	89115988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUST00000168036.8	chr10	-	2693	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGGCTTTGATTTGAA	NA	False	NA	-1	True	AATAAA	-23	NA	116417416	116321065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
ENSMUST00000168083.2	chr19	-	603	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	1083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	1995	False	NA	-20	True	AATAAA	-16	NA	44543858	44538691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
ENSMUST00000168115.8	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
ENSMUST00000168166.8	chr9	+	3944	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTATTGATTTTAAT	NA	False	NA	1	True	AATAAA	-11	NA	74944895	74967576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000168176.8	chr2	+	1806	5	FSM	ENSMUSG00000032679.13	ENSMUST00000168176.8	1806	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAGATTATCTTGAC	NA	False	NA	NA	False	ATTAAA	-15	NA	103926145	103945694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUST00000168194.3	chr7	+	1076	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616324	139620515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUST00000168266.8	chr2	+	2721	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867794	84877450	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUST00000168345.6	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	395	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUST00000168419.3	chr18	-	2152	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	-2	True	AATAAA	-21	NA	84700184	84685593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
ENSMUST00000168457.3	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523701	139525025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_139524343_139524439
ENSMUST00000168463.8	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
ENSMUST00000168503.8	chr4	-	1240	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236592	148230172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUST00000168584.9	chr14	+	1498	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3526	False	NA	8	True	AATAAA	-19	NA	30723356	30733947	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUST00000168776.8	chr1	+	3267	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406782	93437455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000168811.2	chr15	+	1464	11	FSM	ENSMUSG00000078954.10	ENSMUST00000168811.2	1464	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	23.8748821986623	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	1022	False	NA	9	True	ATTAAA	-16	NA	84617092	84656405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000168817.2	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_170879422_170881507_170881763_170885259
ENSMUST00000168833.9	chr14	+	2993	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710075	47769415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_47710175_47763661_47763772_47766631
ENSMUST00000168846.3	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ENSMUST00000168900.3	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUST00000168972.2	chr14	+	1573	6	FSM	ENSMUSG00000052334.12	ENSMUST00000168972.2	1573	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	33.7911230946827	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41765951	41825776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820192_41820192_41820240_41825013
ENSMUST00000169003.8	chr9	+	1803	9	FSM	ENSMUSG00000032387.16	ENSMUST00000169003.8	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	685.603919457145	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGATTTTTGCTTCTA	NA	False	NA	16	True	AATAAA	-16	NA	65536929	65567810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558942_65558987_65566416_65566487_65566719
ENSMUST00000169032.8	chr1	-	2283	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTATTATGTGTTTT	NA	False	NA	-8	True	ATTAAA	-26	NA	65225638	65197776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
ENSMUST00000169308.8	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	7195	False	NA	39	True	AATAAA	-40	NA	26094474	26096143	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
ENSMUST00000169309.3	chr10	+	1277	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982938	88014250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUST00000169390.8	chr5	+	1833	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187843	100216619	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ENSMUST00000169437.9	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	False	NA	NA	False	ATTAAA	-30	NA	99002321	98994582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
ENSMUST00000169492.8	chr9	+	3963	4	FSM	ENSMUSG00000007656.14	ENSMUST00000169492.8	3963	4	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944895	74967595	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000169543.8	chr17	+	778	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1578	False	NA	NA	False	AATAAA	-30	NA	57369282	57372917	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
ENSMUST00000169550.8	chr4	+	2660	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8271	False	NA	20	True	NA	NA	NA	156194454	156211720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUST00000169611.4	chr17	+	3674	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTCCTGTTGTGTGTTC	NA	False	NA	NA	False	TATAAA	-23	NA	41245575	41272879	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUST00000169613.4	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ENSMUST00000169673.3	chr19	+	2757	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043489	38062869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUST00000169712.3	chr10	+	1991	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGTATTTAACAT	NA	False	NA	7	True	AATAAA	-14	NA	20223515	20237050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
ENSMUST00000169826.3	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	7326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUST00000169828.8	chr11	-	3530	4	FSM	ENSMUSG00000038615.18	ENSMUST00000169828.8	3530	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96714953	96708239	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
ENSMUST00000169860.8	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	4335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUST00000170000.4	chr9	-	1773	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTCTCTTTATTTT	NA	False	NA	-4	True	ATTAAA	-12	NA	48406597	48400000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUST00000170010.3	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416290
ENSMUST00000170070.3	chr17	-	3208	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5683	False	NA	NA	False	NA	NA	NA	25946384	25937899	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
ENSMUST00000170078.8	chr15	+	1319	6	FSM	ENSMUSG00000001285.13	ENSMUST00000170078.8	1319	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	204.652290483151	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5956	False	NA	16	True	AATAAA	-17	NA	102240172	102246286	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102240638_102242616_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUST00000170103.3	chr17	+	925	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGATTTCATTTTC	3477	False	NA	19	True	NA	NA	NA	33978965	33980844	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33979562_33980515
ENSMUST00000170122.4	chr3	-	345	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	13930	junction_3	2970.01597451746	7856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120958	90119977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
ENSMUST00000170142.8	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ENSMUST00000170241.8	chr4	+	1079	5	FSM	ENSMUSG00000028478.19	ENSMUST00000170241.8	1079	5	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_1	75.1631558677521	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAAGCATCTTTAAT	8196	False	NA	20	True	AATAAA	-20	NA	44012642	44032845	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000170263.9	chr8	+	2096	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_1	42.4480859403578	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUST00000170295.8	chr1	-	2286	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGAGTTCCTTCCATC	NA	False	NA	3	True	ATTAAA	-22	NA	36722264	36601772	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUST00000170308.8	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	False	NA	42	True	ATTAAA	-29	NA	74944958	74964120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
ENSMUST00000170334.8	chr15	-	2063	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1219	False	NA	NA	False	AATAAA	-30	NA	89314063	89310562	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
ENSMUST00000170335.4	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	7423	False	NA	NA	False	NA	NA	NA	61393043	61392078	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_61392100_61393000
ENSMUST00000170382.5	chr6	-	494	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	0	0	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681677	56678047	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
ENSMUST00000170468.8	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928481	110921533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
ENSMUST00000170491.8	chr17	-	2433	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250622	34247246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
ENSMUST00000170629.3	chr15	+	2641	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATAAAGTTTATTAAA	7137	False	NA	-13	True	ATTAAA	-18	NA	85743945	85760731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUST00000170667.8	chr6	-	1990	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648118	100550042	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUST00000170693.9	chr18	+	2480	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGTCTCATCTCTCA	NA	False	NA	17	True	AATAAA	-28	NA	35904610	35940221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUST00000170705.8	chr8	+	1634	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5025	False	NA	9	True	AATAAA	-13	NA	34221860	34267192	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUST00000170715.8	chr17	+	998	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	0	0	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	54489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATGTTTTTTTTTGTCTG	6190	False	NA	1	True	AATAAA	-20	NA	24939036	24940900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUST00000170744.2	chr2	+	2776	7	FSM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCTGGTTCTGACCCTT	NA	False	NA	22	True	AATAAA	-24	NA	172392910	172400539	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ENSMUST00000170781.2	chr3	-	1111	4	FSM	ENSMUSG00000028133.18	ENSMUST00000170781.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4043561297323	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGTTTTCATGTTTA	NA	False	NA	-3	True	ATTAAA	-13	NA	120965337	120949494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_120949952_120950049_120950166_120952463_120952905_120965240
ENSMUST00000170788.9	chr3	+	1730	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479577	68533797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUST00000170805.9	chr16	+	1520	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	163.600059877241	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737131	22758528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000170811.8	chr18	+	2886	8	FSM	ENSMUSG00000060450.15	ENSMUST00000170811.8	2886	8	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACACGGTGTCCTGT	926	False	NA	21	True	AATAAA	-26	NA	38429687	38450900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUST00000170828.2	chrX	+	452	5	FSM	ENSMUSG00000079435.10	ENSMUST00000170828.2	452	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	5056.48450012457	11963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486438	133488811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133486469_133486826_133486933_133487260_133487328_133488199_133488323_133488685
ENSMUST00000170908.8	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7279	False	NA	25	True	ATTAAA	-23	NA	125994060	126007196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUST00000170953.3	chr7	-	589	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	18092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTGGTTCTTTCTGC	NA	False	NA	0	True	AATAAA	-20	NA	115933430	115930739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUST00000171080.8	chr11	-	2844	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_11753064_11758894
ENSMUST00000171121.9	chr17	-	1710	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	3930	False	NA	0	True	AATAAA	-17	NA	34846409	34835635	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
ENSMUST00000171140.8	chr15	-	1416	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1640	False	NA	NA	False	AATAAA	-23	NA	89313642	89310569	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
ENSMUST00000171172.3	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	3.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	False	NA	-2	True	AATAAA	-21	NA	46464479	46458312	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46459211_46463704_46463968_46464368
ENSMUST00000171183.2	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_1	0	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1694	False	NA	-5	True	AATAAA	-24	NA	28441195	28439065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28439665_28440911
ENSMUST00000171229.8	chr13	-	1426	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_9	38.39206450927	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178127	35161730	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
ENSMUST00000171247.8	chr11	+	1867	11	FSM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	15	True	AATAAA	-16	NA	69471184	69482698	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUST00000171249.6	chr3	-	1110	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTTTTTTTAAGTG	NA	False	NA	-2	True	AATAAA	-13	NA	96615878	96613384	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
ENSMUST00000171265.8	chr1	+	3680	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_4	18.6899036915657	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	9814	False	NA	NA	False	ATTAAA	-14	NA	9918496	9971068	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUST00000171280.3	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_15635663_15636774_15636933_15637624
ENSMUST00000171597.2	chr1	+	2098	6	FSM	ENSMUSG00000026036.18	ENSMUST00000171597.2	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_2	29.7119504576862	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGACACACTGTAT	NA	False	NA	13	True	NA	NA	NA	58486789	58501425	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUST00000171702.8	chr15	-	3052	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549524	99518376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
ENSMUST00000171795.9	chr17	-	2734	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85397652	85371957	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ENSMUST00000171847.8	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910529	45896125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
ENSMUST00000171938.2	chr11	-	2974	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	284.5	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_11753064_11756095_11756216_11758884
ENSMUST00000172023.8	chrX	+	812	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	10839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486437	133488811	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUST00000172079.2	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
ENSMUST00000172107.8	chr15	-	3346	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	0	0	0	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	2076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284244	81247869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUST00000172175.3	chr19	+	2004	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5428	False	NA	12	True	CATAAA	-17	NA	8779918	8782210	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8780050_8780337
ENSMUST00000172184.2	chr13	-	1327	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089691	34063799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
ENSMUST00000172229.8	chr17	-	1446	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	419.5	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71156785	71151199	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71152268_71153166_71153394_71156634
ENSMUST00000172282.8	chr10	+	3110	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1383	False	NA	23	True	AATAAA	-13	NA	79690260	79700266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUST00000172298.8	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	0	0	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGTGAGATTACATTCT	NA	False	NA	-2	True	AATAAA	-21	NA	64645040	64622580	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUST00000172307.9	chr15	+	1544	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000172455.3	chr17	+	1544	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4928	False	NA	3	True	NA	NA	NA	33848074	33850664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
ENSMUST00000172501.8	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	6010	False	NA	NA	False	AATAAA	-14	NA	35171444	35169218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ENSMUST00000172518.8	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269425	37265249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
ENSMUST00000172618.8	chr17	-	1559	8	FSM	ENSMUSG00000015120.16	ENSMUST00000172618.8	1559	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4216	False	NA	NA	False	GATAAA	-15	NA	25492888	25481152	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUST00000172809.2	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000172817.2	chr17	+	807	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	58	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1259	False	NA	13	True	NA	NA	NA	34124108	34125649	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34124169_34124501_34124892_34125292
ENSMUST00000172912.8	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	False	NA	-4	True	AATAAA	-32	NA	34219263	34214990	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000172974.8	chr6	+	3063	6	FSM	ENSMUSG00000029767.17	ENSMUST00000172974.8	3063	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	338.701638614282	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	NA	False	NA	115	True	AATAAA	-19	NA	29348067	29376671	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29374397
ENSMUST00000173035.2	chr17	+	1406	3	FSM	ENSMUSG00000092390.2	ENSMUST00000173035.2	1406	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGTAGTAAAGACTTTG	NA	False	NA	NA	False	NA	NA	NA	38320537	38323287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_38320666_38320869_38320931_38322070
ENSMUST00000173070.8	chr17	-	434	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6007	False	NA	NA	False	AATAAA	-16	NA	35171447	35169216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
ENSMUST00000173080.10	chr17	-	1138	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
ENSMUST00000173084.8	chr17	-	1286	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4747	False	NA	NA	False	AATAAA	-9	NA	25492357	25480894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUST00000173114.8	chr17	-	917	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_6	341.027369380621	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTCCTACTGTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	35340405	35335171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
ENSMUST00000173132.8	chr17	+	438	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4106	False	NA	25	True	AATATA	-16	NA	34043577	34057283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34043655_34048640_34048791_34057072
ENSMUST00000173154.8	chr4	+	2773	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_23	124.10724948608	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642887	148666847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
ENSMUST00000173158.8	chr13	-	1415	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	398	False	NA	NA	False	AATAAA	-10	NA	67081131	67060189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
ENSMUST00000173183.2	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ENSMUST00000173357.8	chr17	+	1399	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	0	0	0	0	multi-exon	TRUE	canonical	3	266	junction_1	84.0802592764794	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	-6	True	NA	30	True	AGTAAA	-20	NA	35069373	35075230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000173363.8	chr17	-	871	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173363.8	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	61	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159278	34157896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721
ENSMUST00000173397.8	chr9	+	3510	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	0	0	0	0	multi-exon	TRUE	canonical	2	185	junction_20	132.122244531343	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	18	True	AATAAA	-28	NA	21336227	21418434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ENSMUST00000173480.8	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34042091_34042166_34042305_34043272
ENSMUST00000173482.8	chr18	-	871	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173482.8	871	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	659.109626693466	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803339	36800298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803314
ENSMUST00000173486.8	chr17	-	579	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568735	36566558	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
ENSMUST00000173492.9	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	9693	False	NA	-7	True	AATAAA	-26	NA	34109635	34094632	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
ENSMUST00000173584.8	chr17	+	4048	29	FSM	ENSMUSG00000007029.17	ENSMUST00000173584.8	4048	29	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	416.176527192145	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAGCGCTCTAGA	9538	False	NA	NA	False	NA	NA	NA	35220026	35235006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
ENSMUST00000173655.8	chr11	-	1213	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600346	113588997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUST00000173678.3	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34158638_34158721_34158793_34158997
ENSMUST00000173713.8	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUST00000173734.9	chr9	+	1228	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
ENSMUST00000173789.2	chr17	+	783	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	NA	False	NA	12	True	AATAAA	-15	NA	34029496	34041891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUST00000173811.8	chr17	-	747	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6022	False	NA	NA	False	AATAAA	-16	NA	35171432	35169216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
ENSMUST00000173814.2	chr17	+	1020	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	112	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269532	37276514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_37269688_37275248_37275325_37275725
ENSMUST00000173824.8	chr7	+	2912	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944226	79965999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
ENSMUST00000173869.8	chr17	-	1859	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	False	NA	-11	True	AATAAA	-8	NA	34000517	33993881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
ENSMUST00000173900.2	chr17	+	1111	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTATCTCTATTAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	36305344	36349327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_36305453_36348324
ENSMUST00000173937.8	chr4	+	756	4	FSM	ENSMUSG00000028797.21	ENSMUST00000173937.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	291.296336323606	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTACAGAGTGAGTCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129500879_129500973_129501248
ENSMUST00000173938.8	chr11	+	1626	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319448	80362735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ENSMUST00000173969.2	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_102720426_102723799
ENSMUST00000174039.8	chr17	-	934	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	40	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6044	False	NA	NA	False	AATAAA	-15	NA	35171410	35169217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860
ENSMUST00000174048.8	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159299	34157892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ENSMUST00000174105.8	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
ENSMUST00000174172.8	chr7	+	3008	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944252	79966002	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
ENSMUST00000174175.8	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	8485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
ENSMUST00000174259.8	chr14	+	1112	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815816	55818985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUST00000174269.8	chr9	-	3286	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174269.8	3286	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	268.954664525916	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTCATTAATATAAATG	NA	False	NA	34	True	AATAAA	-16	NA	88364184	88334692	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345112_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUST00000174350.8	chr4	+	1124	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3198	False	NA	NA	False	NA	NA	NA	129494494	129501670	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUST00000174355.8	chr7	-	1104	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174355.8	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432933	19430196	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432896
ENSMUST00000174493.8	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
ENSMUST00000174510.8	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	90	False	NA	5	True	AATAAA	-18	NA	77458108	77481827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ENSMUST00000174609.9	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_2	9115.60860557319	8278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
ENSMUST00000174620.3	chr17	-	974	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174627	34170975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ENSMUST00000174672.2	chr17	+	2597	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	0	0	0	0	multi-exon	FALSE	canonical	3	2767	junction_1	286	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37314557	37321524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_37315796_37316941_37317087_37320310
ENSMUST00000174714.8	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6030	False	NA	NA	False	AATAAA	-16	NA	35171424	35169216	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
ENSMUST00000174745.8	chr17	-	536	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174745.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174186	34170972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ENSMUST00000174846.8	chr1	+	995	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174846.8	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	89.5408038581046	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATAGTTTCATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	87254719	87283444	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282692
ENSMUST00000175714.8	chr15	+	1953	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	8246	False	NA	6	True	NA	NA	NA	79776603	79792119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUST00000176010.8	chr10	-	582	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	58029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385174	128383982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
ENSMUST00000176016.2	chr11	+	471	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5892	False	NA	8	True	ATTAAA	-17	NA	83182568	83185456	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83182924_83185340
ENSMUST00000176086.8	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
ENSMUST00000176116.8	chr11	-	1688	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176116.8	1688	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	221.001523681145	984	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70130656	70126031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130485
ENSMUST00000176215.2	chr17	+	477	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4783	False	NA	13	True	AATAAA	-16	NA	24747240	24747717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24747200_24747700
ENSMUST00000176304.8	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
ENSMUST00000176531.8	chr9	-	2310	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176531.8	2310	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_5	12.2031416719903	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7977	False	NA	NA	False	NA	NA	NA	35111224	35098080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111152
ENSMUST00000176610.9	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
ENSMUST00000176667.8	chr5	+	2209	18	FSM	ENSMUSG00000093445.8	ENSMUST00000176667.8	2209	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	70.0872417297699	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGTGTGCCTGCCTGTCC	2241	False	NA	30	True	AATAAA	-32	NA	137627439	137639361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137639026
ENSMUST00000176668.8	chr17	-	2667	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746824	24727823	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUST00000176683.8	chr10	-	437	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176683.8	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_3	9065.73447413697	57782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385031	128383982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384550_128384817_128384841_128384956
ENSMUST00000176906.2	chr10	-	509	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176906.2	509	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	7652	30996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	False	NA	-24	True	AATAAA	-23	NA	128384971	128383988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384321_128384526_128384550_128384817
ENSMUST00000176921.2	chr17	+	298	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4764	False	NA	14	True	AATAAA	-17	NA	24747221	24747718	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24747411_24747609
ENSMUST00000176939.8	chr19	-	3427	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576813	40538700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUST00000176957.8	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	1241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUST00000176966.2	chr10	-	523	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAGGAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128384981	128384344	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384843_128384956
ENSMUST00000177150.2	chr11	+	383	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	190.5	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTATTTGTTTGGGTAAG	5848	False	NA	9	True	ATTAAA	-18	NA	83182524	83185457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_83182660_83182792_83182924_83185340
ENSMUST00000177163.8	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	58454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385022	128383982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384550_128384817
ENSMUST00000177207.2	chr14	+	1476	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6275	False	NA	29	True	AATAAA	-19	NA	76741653	76745203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_76741734_76742688_76742738_76743856
ENSMUST00000177359.2	chr15	-	1110	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	30	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544317	76542339	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76543066_76543418_76543640_76544154
ENSMUST00000177390.8	chr3	+	2836	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496244	95526553	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ENSMUST00000177466.8	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUST00000177470.8	chr17	-	2912	14	FSM	ENSMUSG00000025733.18	ENSMUST00000177470.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.5966828445327	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCTTGGATTTTGATCT	6075	False	NA	-4	True	ATTAAA	-17	NA	26063437	26057813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059195_26059310_26059411_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26061066_26061153_26061393_26062080_26062135_26062914_26062959_26063062_26063288_26063373
ENSMUST00000177501.2	chr1	+	1636	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	240	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAGTATGTGTTTGTT	NA	False	NA	5	True	NA	NA	NA	16735430	16748419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_16735730_16737888_16737998_16747191
ENSMUST00000177513.2	chr10	-	680	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_2	7636	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	-21	True	AATAAA	-26	NA	128385007	128383985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384843_128384956
ENSMUST00000177588.10	chr7	+	3174	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	0	0	0	0	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	1107	False	NA	30	True	AATAAA	-18	NA	13011238	13045350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUST00000177752.9	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957869	6955111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUST00000177840.9	chr7	+	1708	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAGCACTCGAATC	NA	False	NA	-2	True	NA	NA	NA	141047334	141051376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000177841.8	chr7	+	1364	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	18	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUST00000177955.8	chr8	+	1307	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547505	11563287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUST00000178034.9	chr14	-	2730	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	396	False	NA	-23	True	AATAAA	-22	NA	55950951	55937490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
ENSMUST00000178079.8	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	2334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000178092.2	chr14	+	1306	8	FSM	ENSMUSG00000115338.3	ENSMUST00000178092.2	1306	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	82.8093458197928	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCACAATGTTTTGAGAA	9234	False	NA	NA	False	NA	NA	NA	51181962	51202694	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860_51189295_51202479_51202558_51202629
ENSMUST00000178147.3	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18533	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_151692500_151693200
ENSMUST00000178235.8	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	-5	True	AATAAA	-13	NA	74323839	74319004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
ENSMUST00000178289.3	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_14804870_14810884
ENSMUST00000178310.9	chr19	+	613	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	0	0	0	0	multi-exon	FALSE	canonical	3	11442	junction_1	1294.53167207295	16077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	982	False	NA	4	True	AATAAA	-16	NA	6107873	6109549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000178385.9	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328600	84264261	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ENSMUST00000178421.8	chr13	-	1414	10	FSM	ENSMUSG00000021417.16	ENSMUST00000178421.8	1414	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178127	35161732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUST00000178473.8	chr4	+	1076	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334422	155341144	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ENSMUST00000178474.8	chr1	-	2565	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUST00000178627.8	chr1	+	1363	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGAGACCATGCTAGGC	319	False	NA	NA	False	AAGAAA	-16	NA	91178040	91213747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUST00000178632.8	chrX	+	933	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_2	2417.5	3210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171001	135172727	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_135171151_135171558_135171632_135172016
ENSMUST00000179074.9	chr17	+	1938	14	FSM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.5571327177388	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	False	NA	9	True	AATAAA	-22	NA	74702615	74731004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714200_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUST00000179094.8	chr11	-	4052	17	FSM	ENSMUSG00000061306.17	ENSMUST00000179094.8	4052	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.660889305683	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5030	False	NA	-12	True	AATAAA	-12	NA	120042138	119995277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ENSMUST00000179142.2	chr19	+	736	4	FSM	ENSMUSG00000038274.14	ENSMUST00000179142.2	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	4782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCTTCATTTGTAA	1105	False	NA	9	True	AATAAA	-21	NA	6107996	6109554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000179175.3	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
ENSMUST00000179233.2	chr8	-	1423	9	FSM	ENSMUSG00000008892.13	ENSMUST00000179233.2	1423	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	726.253560662528	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTAGTAGTGGTTGGT	NA	False	NA	0	True	AATAAA	-33	NA	23083829	23067090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077565_23077619_23078741_23078811_23083699
ENSMUST00000179323.2	chr4	+	808	2	FSM	ENSMUSG00000050188.9	ENSMUST00000179323.2	808	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTCTGTGCCTGATGCC	NA	False	NA	27	True	CATAAA	-18	NA	125990445	125992374	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_125990501_125991621
ENSMUST00000179324.2	chr13	+	2764	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	70.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_97619286_97619456_97619541_97630912
ENSMUST00000179353.8	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000179365.8	chr6	+	2464	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACTTTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	51521502	51567650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ENSMUST00000179422.8	chr9	-	1462	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	78.0418516710419	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5921	False	NA	-9	True	AATAAA	-15	NA	21996698	21983541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
ENSMUST00000179498.2	chr4	+	434	5	FSM	ENSMUSG00000078773.12	ENSMUST00000179498.2	434	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	99.672902536246	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCACAAGAAGAGGAAGCT	-25	True	NA	NA	False	AAGAAA	-13	NA	11558921	11593653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676_11583723_11593620
ENSMUST00000179554.3	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	5415	junction_4	1216.82506959711	3362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
ENSMUST00000179569.3	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	1895	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
ENSMUST00000179600.8	chrX	-	1650	9	FSM	ENSMUSG00000058328.14	ENSMUST00000179600.8	1650	9	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_8	84.6742840241357	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72151240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72336481
ENSMUST00000179781.8	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	5219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540324	79547803	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000179869.3	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUST00000179954.8	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	2381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000179990.8	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	1612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034865	94056810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000180020.8	chr6	+	2280	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	0	0	0	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	2309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117894254	117902582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_117894560_117896059_117896121_117900668
ENSMUST00000180025.8	chrX	+	2812	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTGTTTGTGTATA	NA	False	NA	7	True	AATAAA	-18	NA	134786599	134791827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUST00000180036.8	chr10	+	1044	6	FSM	ENSMUSG00000035242.16	ENSMUST00000180036.8	1044	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	2881.68367452085	4589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662519	80665124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000180043.8	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUST00000180077.7	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUST00000180095.4	chr6	+	1475	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	2499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908394	124913108	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
ENSMUST00000180159.8	chr15	+	489	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	109	False	NA	NA	False	ATTAAA	-12	NA	36174155	36177153	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ENSMUST00000180180.8	chr9	-	1676	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
ENSMUST00000180358.3	chr14	-	2032	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGTCTATTTCCAAAT	1888	False	NA	-10	True	AATAAA	-17	NA	70680730	70676235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
ENSMUST00000180365.9	chr9	-	2014	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6086	False	NA	-20	True	AATAAA	-13	NA	21504106	21499981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUST00000180765.2	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	58.0427428710946	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
ENSMUST00000181091.8	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181217.8	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181233.2	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	804	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_110864500_110865000
ENSMUST00000181516.2	chr13	-	1094	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66652035_66653161_66653268_66667410
ENSMUST00000181586.8	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	7795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000181645.8	chr10	+	1579	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034467	22059816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUST00000181658.2	chr17	-	1179	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15461045	15451846	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUST00000181873.8	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577394	100568700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUST00000181960.3	chr16	+	574	3	FSM	ENSMUSG00000097290.10	ENSMUST00000181960.3	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_21613197_21614599_21614726_21627427
ENSMUST00000181967.3	chr9	+	843	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362404	58376918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_58362640_58374083_58374201_58376427
ENSMUST00000182111.8	chr7	-	585	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755161_4755722
ENSMUST00000182174.8	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
ENSMUST00000182183.8	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	False	NA	13	True	AATAAA	-16	NA	88037013	88081868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ENSMUST00000182209.8	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000182328.8	chr7	-	1391	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879977	28873612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000182402.8	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057527	95082557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUST00000182533.8	chr17	+	3122	21	FSM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_18	119.307543768196	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCATTTTTGTTCG	7977	False	NA	-40	True	NA	NA	NA	56891973	56913219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912550_56912658_56912796_56912864_56912975
ENSMUST00000182580.8	chr1	-	473	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	0	0	0	multi-exon	TRUE	canonical	3	370	junction_3	129.892263049036	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGGACTTTTTGTCAAT	NA	False	NA	1	True	AATAAA	-15	NA	10014343	10012183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_10012381_10012547_10012617_10012834_10012943_10014244
ENSMUST00000182602.2	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	7355	False	NA	-33	True	AATAAA	-10	NA	139812598	139809367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_139809829_139811882_139812120_139812563
ENSMUST00000182633.8	chr12	+	1116	11	FSM	ENSMUSG00000010608.16	ENSMUST00000182633.8	1116	11	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	175.251276742853	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	4055	False	NA	-11	True	NA	NA	NA	83679099	83710773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUST00000182709.8	chr5	+	3046	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493632	34510783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000182719.8	chr3	+	2156	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401540	68533796	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUST00000182742.2	chr1	-	400	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014342	10012249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
ENSMUST00000182758.2	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
ENSMUST00000182898.8	chr10	-	1852	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGTTGAAACTATT	NA	False	NA	2	True	AATAAA	-28	NA	59838957	59823230	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUST00000182980.8	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUST00000183032.8	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
ENSMUST00000183087.2	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_61772840_61778233_61778437_61780274
ENSMUST00000183146.2	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	10	True	AATAAA	-19	NA	84463969	84465352	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84464000_84465400
ENSMUST00000183309.8	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUST00000183334.8	chr7	-	490	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756022	4754793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
ENSMUST00000183363.2	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUST00000183431.8	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	TRUE	canonical	3	49	junction_3	71.4624998785299	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
ENSMUST00000183638.8	chr3	-	1723	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATCTGAGTGTGAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	116388509	116374743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUST00000183947.8	chr2	+	1437	7	FSM	ENSMUSG00000027333.19	ENSMUST00000183947.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	49.4705299479734	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362974_131363092_131363978_131364140_131366662
ENSMUST00000184126.3	chr9	+	496	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	0	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72946999	72950061	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_72947148_72949713
ENSMUST00000184143.8	chr7	-	435	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
ENSMUST00000184297.8	chr17	-	2742	14	FSM	ENSMUSG00000024095.16	ENSMUST00000184297.8	2742	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	238.271661377061	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	3570	False	NA	NA	False	TATAAA	-15	NA	80369656	80337265	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80352368_80352452_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUST00000184557.8	chr9	-	1434	13	FSM	ENSMUSG00000090626.10	ENSMUST00000184557.8	1434	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	78.1435200270772	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGATATCAAGTGTAG	7736	False	NA	-108	True	NA	NA	NA	72399383	72368460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72383329_72383429_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUST00000184678.2	chr18	+	890	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859503	61868988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_61860074_61868668
ENSMUST00000184862.8	chr2	+	1730	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712384	179727695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
ENSMUST00000184866.10	chrX	+	893	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	4056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8505	False	NA	17	True	ATTAAA	-14	NA	36891635	36897308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUST00000184877.8	chr3	-	1575	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398331	90395679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
ENSMUST00000185168.8	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458986
ENSMUST00000185384.7	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	2017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
ENSMUST00000185524.7	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUST00000185558.2	chr11	+	427	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	466	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	False	NA	19	True	NA	NA	NA	119989769	119991189	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_119989892_119989973_119990089_119990999
ENSMUST00000185641.7	chr15	-	731	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	0	0	0	0	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	7660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUST00000185752.2	chr1	-	1901	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186176	135181316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
ENSMUST00000185800.7	chr10	+	3142	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2858	False	NA	9	True	AATAAA	-17	NA	20188282	20216009	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ENSMUST00000186131.7	chr14	-	1005	4	FSM	ENSMUSG00000021917.17	ENSMUST00000186131.7	1005	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723623	30721783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000186182.2	chr7	-	1512	7	FSM	ENSMUSG00000030591.18	ENSMUST00000186182.2	1512	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28880098	28873612	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000186239.7	chr10	-	2255	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_11	75.4430440303278	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	384	False	NA	4	True	AATAAA	-25	NA	41685609	41594836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
ENSMUST00000186364.2	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUST00000186375.8	chr16	+	2350	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	0	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702546	3722634	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
ENSMUST00000186531.2	chr8	+	2137	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTTTACCTGCTGCT	NA	False	NA	9	True	NA	NA	NA	123769204	123771341	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123769200_123771300
ENSMUST00000186647.7	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8866613_8867366_8867465_8867774
ENSMUST00000186863.7	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
ENSMUST00000186870.7	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_14672354_14674600_14674718_14676269
ENSMUST00000187168.7	chr16	+	1238	12	FSM	ENSMUSG00000022884.17	ENSMUST00000187168.7	1238	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGAGGAAAGGTGTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22931934	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUST00000187500.7	chr1	-	3403	10	FSM	ENSMUSG00000025982.14	ENSMUST00000187500.7	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_5	107.350930234545	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066623	55042309	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUST00000187578.2	chr15	-	1877	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3571	False	NA	-5	True	AATAAA	-13	NA	79967554	79961995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
ENSMUST00000187656.7	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
ENSMUST00000187836.7	chr1	-	1862	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	0	0	0	0	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293793	75285208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
ENSMUST00000188111.7	chr7	+	2131	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	296.487211641019	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896158	43901741	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000188124.7	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	False	NA	NA	False	AATAAA	-19	NA	127111154	127128494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
ENSMUST00000188260.7	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	944	False	NA	-5	True	NA	NA	NA	115681743	115675229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_115675488_115679862_115680025_115681424
ENSMUST00000188414.4	chr6	-	3121	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217173	6041218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUST00000188445.7	chr9	+	2711	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTCTCGACAACATT	NA	False	NA	0	True	AATAAA	-15	NA	83716741	83751546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
ENSMUST00000188503.2	chr15	+	1211	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8402	False	NA	27	True	AATAAA	-15	NA	74827516	74831180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_74827567_74829628_74829727_74830117
ENSMUST00000188632.2	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917829	7939195	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
ENSMUST00000188641.7	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUST00000188852.2	chr17	-	845	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845879	30841414	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
ENSMUST00000189013.8	chr16	-	982	6	FSM	ENSMUSG00000023791.19	ENSMUST00000189013.8	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	-2	True	AATAAA	-28	NA	31918545	31903235	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUST00000189268.7	chr11	-	2347	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUST00000189529.7	chr1	-	1801	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465499	78401721	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
ENSMUST00000189690.7	chr1	-	2060	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_8	12	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGTAATTTGGTCAC	NA	False	NA	-4	True	AATAAA	-17	NA	90017866	89969856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUST00000189770.7	chr10	-	2232	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	72.0486641097529	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	129	False	NA	4	True	AATAAA	-25	NA	41685864	41594836	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ENSMUST00000189808.7	chr19	-	708	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9073	False	NA	NA	False	NA	NA	NA	4109446	4107476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
ENSMUST00000189936.7	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
ENSMUST00000189967.3	chr5	-	877	1	FSM	ENSMUSG00000101587.3	ENSMUST00000189967.3	877	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAGCTGAAAATTTTAC	NA	False	NA	NA	False	NA	NA	NA	45927085	45926208	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_45926200_45927100
ENSMUST00000190033.4	chr9	-	1408	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405016	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
ENSMUST00000190415.2	chr17	+	1964	3	FSM	ENSMUSG00000060149.8	ENSMUST00000190415.2	1964	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	11	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171800	17194419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17171971_17191432_17191494_17192686
ENSMUST00000190602.2	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_75555246_75556106_75556298_75562696
ENSMUST00000190715.7	chr9	+	1768	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125513	99146981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUST00000190729.2	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787887	100792566	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000191108.7	chr1	+	1500	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187513	75190886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
ENSMUST00000191150.2	chr1	+	874	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591661	105592875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_105592359_105592698
ENSMUST00000191237.7	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUST00000191316.2	chr15	-	1391	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	23	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140439	9127134	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_9128085_9139518_9139791_9140270
ENSMUST00000191436.7	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
ENSMUST00000191450.7	chr4	-	1304	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	-11	True	AATAAA	-17	NA	148711215	148701181	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUST00000191485.7	chr3	+	3154	13	FSM	ENSMUSG00000042626.14	ENSMUST00000191485.7	3154	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCTCTGGAAAGTCTGA	NA	False	NA	32	True	ATTAAA	-29	NA	89325857	89337334	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUST00000191689.6	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUST00000191691.2	chr3	+	590	2	FSM	ENSMUSG00000039221.11	ENSMUST00000191691.2	590	2	0	0	0	0	multi-exon	FALSE	canonical	3	7992	junction_1	0	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACATGTATGGTTCAT	NA	False	NA	11	True	AATAAA	-16	NA	28860647	28861565	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_28861008_28861335
ENSMUST00000191783.6	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUST00000191997.2	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108216758_108216978
ENSMUST00000192150.6	chr1	+	1756	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898519	160913894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
ENSMUST00000192248.2	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUST00000192639.6	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
ENSMUST00000192704.6	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	15	True	ATTAAA	-17	NA	171975708	172023033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUST00000193168.2	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	4729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
ENSMUST00000193254.6	chr9	-	2518	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971805	107962611	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
ENSMUST00000193638.6	chr1	+	2253	14	FSM	ENSMUSG00000026554.16	ENSMUST00000193638.6	2253	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	236.134301371113	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGATACCTGAGGAGGAC	NA	False	NA	NA	False	AATAAA	-2	NA	171975650	172022361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014919_172015028_172016505_172016637_172018410_172018647_172020084_172020205_172021351_172021469_172022122
ENSMUST00000193673.6	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	False	NA	46	True	NA	NA	NA	37929612	37937445	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000193675.2	chr2	+	1777	8	FSM	ENSMUSG00000026728.10	ENSMUST00000193675.2	1777	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	98.0899212613673	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	50	False	NA	13	True	AATAAA	-13	NA	13579091	13587636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13587283
ENSMUST00000193683.6	chr1	+	1740	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135240	164264869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUST00000193907.6	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	180972257	180993813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
ENSMUST00000194111.6	chr1	-	1501	9	FSM	ENSMUSG00000016481.16	ENSMUST00000194111.6	1501	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	99.5100497437319	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTATCAGGAGTGAG	NA	False	NA	53	True	NA	NA	NA	194813631	194780966	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813367
ENSMUST00000194208.6	chr3	+	1527	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTATTGTTTTATTA	NA	False	NA	2	True	AATAAA	-14	NA	86893857	86897087	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUST00000194244.6	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
ENSMUST00000194565.2	chr2	-	1303	6	FSM	ENSMUSG00000025816.16	ENSMUST00000194565.2	1303	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	114.035783857524	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900145	5886618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900070
ENSMUST00000194649.2	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	4482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ENSMUST00000194876.6	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000194876.6	1059	9	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	False	NA	NA	False	AATAGA	-28	NA	154302780	154327804	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUST00000194932.6	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUST00000195014.6	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	4159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUST00000195235.6	chr9	-	1162	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419392	107416773	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
ENSMUST00000195286.5	chr1	+	656	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_133251787_133254872_133255079_133257093
ENSMUST00000195450.2	chr1	+	462	3	FSM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	16	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37174588	37180417	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_37174647_37176810_37176969_37180171
ENSMUST00000195752.6	chr9	+	2062	5	FSM	ENSMUSG00000010047.13	ENSMUST00000195752.6	2062	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.7532980956336	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTCTTTTTCTGCTTC	NA	False	NA	18	True	ATTAAA	-20	NA	107445143	107449978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_107445176_107446181_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUST00000195833.6	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
ENSMUST00000195838.6	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
ENSMUST00000196069.5	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	192.902969276151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
ENSMUST00000196101.2	chr5	-	388	1	FSM	ENSMUSG00000105828.2	ENSMUST00000196101.2	388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49375030	49374642	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_49374600_49375000
ENSMUST00000196111.5	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	583.199688394301	1770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8129	False	NA	-84	True	NA	NA	NA	145051121	145064883	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUST00000196202.5	chr3	-	495	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	-56	True	NA	NA	NA	130523970	130520524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
ENSMUST00000196388.5	chr5	-	946	9	FSM	ENSMUSG00000062604.12	ENSMUST00000196388.5	946	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.286727911461	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGGAGTGGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23881012	23732944	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23829050_23829125_23880717_23880773_23880855
ENSMUST00000196644.5	chr5	-	2511	18	FSM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	149.186374694419	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAGAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124564064	124531030	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
ENSMUST00000196695.5	chr3	+	2374	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916155	151938408	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUST00000196709.5	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	2752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ENSMUST00000196733.5	chr3	-	2555	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6440	False	NA	-7	True	AATAAA	-14	NA	94566179	94520065	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
ENSMUST00000196769.5	chr3	+	1702	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTTTTGGTTTTATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	90383432	90395270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
ENSMUST00000197044.2	chr5	+	714	1	FSM	ENSMUSG00000029614.14	ENSMUST00000197044.2	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	121342608	121343322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_121342600_121343300
ENSMUST00000197440.5	chr14	-	2278	12	FSM	ENSMUSG00000000958.11	ENSMUST00000197440.5	2278	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	56.5898685556036	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655156	54606900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655113
ENSMUST00000197466.5	chr5	-	2972	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8265	False	NA	-12	True	AGTAAA	-18	NA	137305928	137293976	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000197694.5	chr3	+	2129	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4859	False	NA	20	True	ATTAAA	-23	NA	34074256	34123494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUST00000197767.5	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	1612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7221	False	NA	NA	False	AATAAA	-19	NA	89905973	89902759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
ENSMUST00000197859.5	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000198051.5	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUST00000198077.2	chr9	+	1150	1	FSM	ENSMUSG00000019659.9	ENSMUST00000198077.2	1150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	110485592	110486742	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_110485600_110486700
ENSMUST00000198180.5	chr3	+	3849	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAATGACAAGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	102927922	102965307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUST00000198201.5	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUST00000198350.5	chr3	-	1399	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6182	False	NA	-4	True	AATAAA	-44	NA	153618564	153612927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUST00000198509.2	chr3	-	776	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	45	True	AATAAA	-18	NA	123301979	123301203	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_123301200_123302000
ENSMUST00000198968.2	chr3	+	2916	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474460	37633245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ENSMUST00000199014.5	chr3	-	1280	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7201	False	NA	NA	False	AATAAA	-15	NA	89905993	89902763	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
ENSMUST00000199031.5	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	TRUE	canonical	3	15374	junction_1	2726.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499
ENSMUST00000199033.5	chr3	+	1127	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	0	0	0	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281959	145309868	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUST00000199195.3	chr14	+	463	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	0	0	0	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664386	54667206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUST00000199243.5	chr5	-	2988	20	FSM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	194.772841622735	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGTGCTGTATGTCCC	8265	False	NA	-8	True	AGTAAA	-22	NA	137305928	137293972	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000199317.2	chr3	+	743	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUST00000199406.5	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_3	528.705609099951	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000199464.5	chr3	-	2037	16	FSM	ENSMUSG00000028107.15	ENSMUST00000199464.5	2037	16	0	0	0	0	multi-exon	TRUE	canonical	1	10	junction_13	192.904973727711	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662163	95647287	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95660318_95660443_95661630_95661828_95662069
ENSMUST00000199592.5	chr9	+	1304	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2182	False	NA	7	True	AATAAA	-17	NA	110134240	110150391	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUST00000199633.2	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_41476891_41477364_41477680_41482833
ENSMUST00000199645.2	chr3	-	528	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301982	123301205	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_123301512_123301760
ENSMUST00000199742.2	chr3	-	1570	1	FSM	ENSMUSG00000055436.19	ENSMUST00000199742.2	1570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157737391	157735821	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_157735800_157737400
ENSMUST00000199910.5	chr3	+	2610	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326003	129428620	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUST00000200058.5	chr5	-	1174	7	FSM	ENSMUSG00000029472.14	ENSMUST00000200058.5	1174	7	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_2	189.823382823789	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATTTTATTTTTAAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	122959081	122943906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000200117.2	chr9	+	777	1	FSM	ENSMUSG00000106208.2	ENSMUST00000200117.2	777	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTGTCACTCATGGTAT	NA	False	NA	NA	False	GATAAA	-23	NA	109799500	109800277	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_109799500_109800300
ENSMUST00000200284.5	chr5	-	1405	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706802	109702574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ENSMUST00000200298.2	chr5	+	2632	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478672	111536225	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
ENSMUST00000200305.2	chr3	-	546	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120930	90119977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
ENSMUST00000200323.3	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUST00000200474.5	chr5	-	2413	17	FSM	ENSMUSG00000038095.16	ENSMUST00000200474.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_15	101.972863271314	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563656	124531012	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
ENSMUST00000200486.5	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ENSMUST00000200524.5	chr3	+	2552	20	FSM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	393.500738277491	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916118	151938409	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
ENSMUST00000200566.5	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUST00000200645.5	chr5	-	2404	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959357	122925793	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000200948.2	chr7	-	1430	3	FSM	ENSMUSG00000030680.7	ENSMUST00000200948.2	1430	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCAGGAGGCAGAGGCA	9430	False	NA	-2	True	NA	NA	NA	126616524	126614204	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUST00000201125.4	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUST00000201143.2	chr5	-	2156	22	FSM	ENSMUSG00000029415.5	ENSMUST00000201143.2	2156	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	77.7590324025538	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCAAGGAACACTATAAT	NA	False	NA	-36	True	ATTAAA	-1	NA	92457753	92434599	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446118_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ENSMUST00000201223.2	chr5	+	950	1	FSM	ENSMUSG00000063646.19	ENSMUST00000201223.2	950	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATAAATAAAA	2480	False	NA	NA	False	NA	NA	NA	37248423	37249373	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_37248400_37249400
ENSMUST00000201333.4	chr5	+	1027	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUST00000201422.4	chr5	-	1697	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865464	41782318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUST00000201534.2	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000201791.4	chr5	-	1297	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378868	135320557	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000201937.4	chr5	+	889	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409068	31410541	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUST00000201980.5	chr5	-	3097	6	FSM	ENSMUSG00000023452.20	ENSMUST00000201980.5	3097	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	330.561098739704	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTACCGTAGCTTTGT	7834	False	NA	NA	False	ATTAAA	-11	NA	32899819	32893652	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_32895491_32895731_32895879_32896125_32896718_32897967_32898134_32898388_32898477_32899553
ENSMUST00000202258.4	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUST00000202281.4	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUST00000202361.4	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUST00000202535.4	chr7	+	3112	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTTAATTATG	NA	False	NA	NA	False	AATGAA	-10	NA	42827011	42841533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUST00000202567.2	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	89.9026684582742	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUST00000202622.4	chr5	-	2726	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACCTCTAAAGAAGAAAC	9878	False	NA	NA	False	NA	NA	NA	134668344	134648574	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000202645.4	chr13	-	1406	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642089	74628172	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
ENSMUST00000202758.4	chr5	-	1767	13	FSM	ENSMUSG00000029145.13	ENSMUST00000202758.4	1767	13	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_12	179.460688979199	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	-9	True	AATAAA	-15	NA	31350352	31344910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350163
ENSMUST00000202798.2	chr7	-	1412	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACGCCTTTAATCCCAGC	9430	False	NA	-20	True	AATAAA	-28	NA	126616524	126614222	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUST00000202898.2	chr6	+	2409	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTATTCCTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	35154550	35182588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
ENSMUST00000202950.4	chr5	+	2499	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684355	31711386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
ENSMUST00000202965.2	chr5	-	382	1	FSM	ENSMUSG00000107316.2	ENSMUST00000202965.2	382	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTAAGTGTCTTTTTTA	NA	False	NA	NA	False	GATAAA	-34	NA	32705661	32705279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_32705300_32705700
ENSMUST00000203077.3	chr6	+	1617	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	4994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5872	False	NA	37	True	AATATA	-25	NA	67243994	67261295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203220.3	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	4153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000203436.3	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	4517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203578.3	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUST00000203762.4	chr6	-	498	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCGCTTTGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	134864731	134847211	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
ENSMUST00000203954.3	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUST00000203964.2	chr2	-	1628	1	FSM	ENSMUSG00000107535.2	ENSMUST00000203964.2	1628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	38456366	38454738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_38454700_38456400
ENSMUST00000204158.3	chr6	-	1542	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000204188.3	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000204189.3	chr6	-	1777	8	FSM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	153.460491492044	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_49221666_49221801_49221870_49222415_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUST00000204214.3	chr6	-	550	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
ENSMUST00000204254.2	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419570	113425170	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_113419766_113424218
ENSMUST00000204293.3	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000204436.3	chr6	+	1687	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	14.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTGTGTCAGTGCT	NA	False	NA	6	True	AATAAA	-18	NA	71248660	71262303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_71248825_71259134_71259302_71260947
ENSMUST00000204778.3	chr6	-	3382	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATGATGCTAATAATT	828	False	NA	-5	True	AATAAA	-18	NA	51989529	51834401	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUST00000204885.2	chr6	-	1554	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204885.2	1554	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATACTTTTGTATC	NA	False	NA	-45	True	AATACA	-9	NA	51440164	51438124	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_51438414_51438899
ENSMUST00000204890.3	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	3280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
ENSMUST00000204895.3	chr6	+	1826	10	FSM	ENSMUSG00000068328.11	ENSMUST00000204895.3	1826	10	0	0	0	0	multi-exon	TRUE	canonical	3	960	junction_8	79.6814646104672	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGCCTCTTTGGGTTT	5338	False	NA	13	True	ATTAAA	-23	NA	83031626	83034667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUST00000205091.3	chr6	+	1166	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5872	False	NA	19	True	NA	NA	NA	67243994	67261031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000205106.3	chr6	+	1288	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205106.3	1288	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2366.15668801164	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5866	False	NA	38	True	NA	NA	NA	67243988	67261050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000205118.3	chr6	+	600	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	73	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1785	False	NA	-67	True	AATAAA	-25	NA	65019650	65021115	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_65019715_65020189_65020430_65020819
ENSMUST00000205287.2	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
ENSMUST00000205335.2	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000205352.2	chr7	-	2145	1	FSM	ENSMUSG00000044702.14	ENSMUST00000205352.2	2145	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	121732208	121730063	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_121730100_121732200
ENSMUST00000205367.2	chr7	+	827	1	FSM	ENSMUSG00000045598.11	ENSMUST00000205367.2	827	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8341	False	NA	NA	False	NA	NA	NA	126832465	126833292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_126832500_126833300
ENSMUST00000205548.2	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_115933010_115933134_115933184_115933319
ENSMUST00000205658.2	chr7	+	995	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380204	25385983	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
ENSMUST00000205681.2	chr6	+	752	1	FSM	ENSMUSG00000034744.14	ENSMUST00000205681.2	752	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83773223	83773975	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_83773200_83774000
ENSMUST00000205750.2	chr7	+	1452	1	FSM	ENSMUSG00000046591.11	ENSMUST00000205750.2	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1950	False	NA	NA	False	NA	NA	NA	79309969	79311421	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_79310000_79311400
ENSMUST00000205802.2	chr6	-	1854	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91450431	91448577	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_91448600_91450400
ENSMUST00000205906.2	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
ENSMUST00000205960.2	chr7	+	1992	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUST00000206026.2	chr7	-	2906	7	FSM	ENSMUSG00000042502.11	ENSMUST00000206026.2	2906	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	225.562999329825	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGAGTCTGCGCCCAG	5520	False	NA	28	True	NA	NA	NA	126795110	126791167	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795086
ENSMUST00000206135.2	chr19	+	744	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701521	8703807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000206155.2	chr19	+	605	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700838	8703807	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000206194.2	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_64042592_64049916_64050093_64061582
ENSMUST00000206319.2	chr6	-	2410	1	FSM	ENSMUSG00000055850.13	ENSMUST00000206319.2	2410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8717	False	NA	NA	False	TATAAA	-15	NA	72339106	72336696	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_72336700_72339100
ENSMUST00000206405.2	chr7	+	1428	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUST00000206439.2	chr7	-	1690	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26895578	26893888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_26893900_26895600
ENSMUST00000206570.2	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	1739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5226	False	NA	NA	False	AATAAA	-13	NA	126391512	126385039	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
ENSMUST00000206598.2	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690349	8684950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ENSMUST00000206603.2	chr7	-	1601	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	33929688	33914633	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUST00000206882.2	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_64042592_64061582
ENSMUST00000206947.2	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	1551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91493029	91499602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000207082.2	chr7	-	1241	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892397	29886360	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
ENSMUST00000207083.2	chr8	+	228	1	FSM	ENSMUSG00000109462.2	ENSMUST00000207083.2	228	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCTGTGGTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	4828041	4828269	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_4828000_4828300
ENSMUST00000207296.2	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	290.731118618791	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	9275	False	NA	-14	True	AGTAAA	-16	NA	30428947	30427127	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000207309.2	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
ENSMUST00000207419.2	chr7	+	675	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTTA	NA	False	NA	NA	False	AAGAAA	-10	NA	130972884	130973559	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_130972900_130973600
ENSMUST00000207628.2	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUST00000207683.2	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
ENSMUST00000207711.2	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUST00000207776.2	chr7	+	1735	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623089	142624824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_142623100_142624800
ENSMUST00000207779.2	chr7	-	774	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9290	False	NA	-12	True	AGTAAA	-18	NA	30428932	30427125	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000207895.2	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUST00000207957.2	chr7	-	880	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCCACCTGTACACTG	9671	False	NA	-77	True	NA	NA	NA	6158925	6145351	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_6146150_6158843
ENSMUST00000208054.2	chr7	-	383	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCTGTATTGTTCT	NA	False	NA	-12	True	AATAAA	-10	NA	80994975	80992482	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
ENSMUST00000208185.2	chr8	+	376	1	FSM	ENSMUSG00000087687.4	ENSMUST00000208185.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5587	False	NA	NA	False	AATATA	-6	NA	3671550	3671926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_3671600_3671900
ENSMUST00000208190.2	chr7	-	2259	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	-5	True	ATTAAA	-16	NA	143102843	143067319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUST00000208214.2	chr9	+	2398	24	FSM	ENSMUSG00000032604.17	ENSMUST00000208214.2	2398	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.995898669366	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385257	108393140	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_108385399_108385581_108385681_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUST00000208352.2	chr7	-	293	2	FSM	ENSMUSG00000036751.8	ENSMUST00000208352.2	293	2	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	134	False	NA	-4	True	AATAAA	-18	NA	30322908	30316398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_30316588_30322804
ENSMUST00000208357.2	chr7	-	806	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTGAAATACCATTAC	NA	False	NA	-2	True	AATAAA	-17	NA	89590407	89567911	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ENSMUST00000208441.2	chr7	+	485	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGTCTACGCAGTGGA	5724	False	NA	72	True	NA	NA	NA	29883618	29885503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
ENSMUST00000208477.2	chr7	-	1553	6	FSM	ENSMUSG00000035227.8	ENSMUST00000208477.2	1553	6	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_5	975.780180163545	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508066	99488109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99498363_99498460_99507970
ENSMUST00000208532.2	chr7	-	489	6	FSM	ENSMUSG00000030744.14	ENSMUST00000208532.2	489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5856.28204238833	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8437	False	NA	-34	True	AATAAA	-36	NA	99132843	99128088	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99128159_99128480_99128535_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUST00000208737.2	chr11	+	1843	14	FSM	ENSMUSG00000025156.18	ENSMUST00000208737.2	1843	14	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_6	299.627579489159	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	1404	False	NA	1	True	ATTAAA	-18	NA	120675110	120679927	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677837_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000208848.2	chr7	+	832	2	FSM	ENSMUSG00000066979.7	ENSMUST00000208848.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	131162119	131163206	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_131162184_131162438
ENSMUST00000209032.2	chr7	-	1610	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508118	99488110	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
ENSMUST00000209099.2	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
ENSMUST00000209200.2	chr8	+	1519	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633577	43646901	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000209210.2	chr8	-	936	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACAGAACTGACTCTT	NA	False	NA	NA	False	AGTAAA	-17	NA	45618256	45613530	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_45614092_45614492_45614559_45617947
ENSMUST00000209245.2	chr7	-	1512	12	FSM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	132.007888569692	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	3171	False	NA	NA	False	NA	NA	NA	45463726	45457062	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ENSMUST00000209287.2	chr7	+	1027	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	14436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6008	False	NA	9	True	AATAAA	-16	NA	45367580	45370252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000209294.2	chr7	-	1612	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680455	140671089	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ENSMUST00000209356.2	chr8	-	1744	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	3541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759987	43748099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
ENSMUST00000209396.2	chr8	+	2421	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2120	False	NA	88	True	AATAAA	-18	NA	13388767	13428442	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUST00000209449.2	chr16	+	580	3	FSM	ENSMUSG00000097290.10	ENSMUST00000209449.2	580	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTGGAAAGATGGG	NA	False	NA	16	True	AATAAA	-21	NA	21613091	21627776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_21613197_21614599_21614726_21627427
ENSMUST00000209484.2	chr7	-	1783	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8628	False	NA	-7	True	AATAAA	-28	NA	45480219	45474653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
ENSMUST00000209565.2	chr8	+	1971	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608428	11613250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_11608567_11611417
ENSMUST00000209626.2	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ENSMUST00000209693.2	chr7	+	535	5	FSM	ENSMUSG00000059070.17	ENSMUST00000209693.2	535	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3268.24428210316	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5963	False	NA	12	True	AATAAA	-19	NA	45367535	45370255	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369717_45369912_45370137
ENSMUST00000209812.2	chr7	-	690	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209812.2	690	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	5944.08936744421	17812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCTTAGGCACTGC	NA	False	NA	45	True	NA	NA	NA	44778147	44775295	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919_44776993_44778123
ENSMUST00000209872.2	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
ENSMUST00000209885.2	chr8	+	2511	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2103	False	NA	94	True	AATAAA	-24	NA	13388750	13428448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUST00000210073.2	chr7	-	992	6	FSM	ENSMUSG00000074129.15	ENSMUST00000210073.2	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	955.88798506938	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44777247	44775345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919
ENSMUST00000210106.2	chr7	-	943	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	17276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45109263	45107368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
ENSMUST00000210136.2	chr8	+	1552	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000210139.2	chr7	+	1077	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUST00000210191.2	chr7	-	562	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATAAAGACTGTTT	NA	False	NA	3	True	NA	NA	NA	44778160	44775371	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000210314.2	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	140748602	140740238	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
ENSMUST00000210381.2	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
ENSMUST00000210530.2	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ENSMUST00000210558.2	chr7	+	2815	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTTCAAGGTGCCCA	NA	False	NA	58	True	AATAAA	-29	NA	67925742	68012840	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUST00000210564.3	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	False	NA	85	True	CATAAA	-20	NA	67338436	67340960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67338400_67341000
ENSMUST00000210587.2	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
ENSMUST00000210642.2	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	871	False	NA	-7	True	CATAAA	-10	NA	44753169	44742487	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
ENSMUST00000210815.2	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000210815.2	1535	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2882.58672099932	5758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495264	46505051	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_46495342_46497019_46497170_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000210917.2	chr19	+	410	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9355	False	NA	0	True	NA	NA	NA	5962980	5964854	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5963101_5964564
ENSMUST00000210966.2	chr7	-	956	1	FSM	ENSMUSG00000030751.19	ENSMUST00000210966.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113875302	113874346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_113874300_113875300
ENSMUST00000210967.2	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	21588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000211115.2	chr8	+	2601	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070325	47092724	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUST00000211174.2	chr8	-	2447	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
ENSMUST00000211179.2	chr7	-	1606	8	FSM	ENSMUSG00000025486.18	ENSMUST00000211179.2	1606	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	111.890799534225	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462211	140443582	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_140443997_140444887_140445098_140447643_140447800_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
ENSMUST00000211217.2	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUST00000211248.2	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	2930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
ENSMUST00000211352.2	chr7	-	1453	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
ENSMUST00000211365.2	chr7	-	801	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	1302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9977	False	NA	-2	True	AATAAA	-22	NA	45116260	45111120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUST00000211443.2	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613067	21627790	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
ENSMUST00000211500.2	chr7	-	825	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTTTGAGACAGC	NA	False	NA	-40	True	AGTAAA	-2	NA	45108887	45107388	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108085_45108507
ENSMUST00000211626.2	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
ENSMUST00000211719.2	chr8	-	1622	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	0	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235508	79231905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_79233447_79235427
ENSMUST00000211759.2	chr7	+	915	6	FSM	ENSMUSG00000025503.6	ENSMUST00000211759.2	915	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1496.17504323525	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	2942	False	NA	18	True	ATTAAA	-17	NA	140979340	140982881	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_+_140979379_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUST00000211807.2	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94905900_94907000
ENSMUST00000211898.2	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	447	False	NA	18	True	NA	NA	NA	70583982	70586398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
ENSMUST00000212019.2	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
ENSMUST00000212075.2	chr9	+	2800	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-5	True	NA	14	True	AATAAA	-1	NA	4376561	4386870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_4376624_4383536_4384143_4384738
ENSMUST00000212095.2	chr8	+	1257	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAGTTATGTGCAGC	NA	False	NA	21	True	AATAAA	-18	NA	73449917	73466531	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
ENSMUST00000212129.2	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	17396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
ENSMUST00000212158.2	chr8	+	1862	1	FSM	ENSMUSG00000110631.2	ENSMUST00000212158.2	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGTTAGAGAGAGAG	2115	False	NA	NA	False	NA	NA	NA	122559985	122561847	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_122560000_122561800
ENSMUST00000212289.2	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_96535388_96539051_96539129_96544253
ENSMUST00000212291.2	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905838	94906955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_94905967_94906450
ENSMUST00000212332.2	chr8	-	426	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGAAGGCTGTGTCTT	NA	False	NA	-7	True	AATAAA	-20	NA	106663657	106662366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
ENSMUST00000212335.2	chr1	+	400	4	FSM	ENSMUSG00000046330.11	ENSMUST00000212335.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	7389.73726792021	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750916	72752776	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72750960_72751300_72751384_72752340_72752499_72752660
ENSMUST00000212341.2	chr8	+	1519	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995571	71997165	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_71995702_71995776
ENSMUST00000212426.2	chr8	+	2604	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	32	True	AATAAA	-45	NA	75836203	75854321	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUST00000212432.2	chr1	+	665	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	4096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750472	72752755	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr1_+_72750960_72751300_72751384_72752660
ENSMUST00000212490.2	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123899783_123904588
ENSMUST00000212571.2	chr8	+	2649	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_17	98.3685253625717	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100491	124130545	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
ENSMUST00000212681.2	chr8	+	3001	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7200	False	NA	27	True	AATAAA	-18	NA	69661689	69683188	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUST00000212683.2	chr18	-	3317	6	FSM	ENSMUSG00000044906.7	ENSMUST00000212683.2	3317	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	79.1722173492697	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605580	70585283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_70586460_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUST00000212686.2	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663670	106662367	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
ENSMUST00000212716.2	chr8	-	1568	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
ENSMUST00000212796.2	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	17391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUST00000212811.2	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUST00000212843.2	chr8	-	1409	1	FSM	ENSMUSG00000033732.11	ENSMUST00000212843.2	1409	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAAAGGCACGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	111573359	111571950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_111572000_111573400
ENSMUST00000212851.2	chr8	+	1507	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	269.5	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCATTTGTGGTAC	461	False	NA	19	True	NA	NA	NA	70583996	70586399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_70584250_70584567_70584659_70585236
ENSMUST00000212938.2	chr8	-	646	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	9	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663659	106662375	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327
ENSMUST00000213005.2	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000213053.2	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
ENSMUST00000213316.2	chr9	-	1454	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420648_21421289
ENSMUST00000213426.2	chr9	+	1111	1	FSM	ENSMUSG00000111472.2	ENSMUST00000213426.2	1111	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATCCTTCAACAAACCAA	NA	False	NA	NA	False	NA	NA	NA	104963118	104964229	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_104963100_104964200
ENSMUST00000213620.2	chr10	-	1442	7	FSM	ENSMUSG00000075232.7	ENSMUST00000213620.2	1442	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	51.8183258016784	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAGAAGAAAAAAC	NA	False	NA	NA	False	AAGAAA	-27	NA	40178182	40165319	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUST00000213660.2	chr9	-	652	5	FSM	ENSMUSG00000032312.8	ENSMUST00000213660.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	9.78199877325692	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTCCGCCAAGGCCATG	NA	False	NA	NA	False	NA	NA	NA	57536044	57534600	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935
ENSMUST00000213747.2	chr9	-	935	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCATTCAGTGAATATAA	1967	False	NA	53	True	NA	NA	NA	44318403	44314994	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
ENSMUST00000213763.2	chr9	+	1216	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUST00000213770.2	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUST00000213815.2	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	9074	False	NA	-30	True	AATAAA	-10	NA	22042949	22038033	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
ENSMUST00000213874.2	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUST00000214072.2	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
ENSMUST00000214285.2	chr9	-	1213	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421483	21418852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21421289
ENSMUST00000214644.2	chr10	-	1103	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	-4	True	ATTAAA	-16	NA	31321850	31208372	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000214685.2	chr11	-	1269	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
ENSMUST00000214910.2	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
ENSMUST00000214923.2	chr9	-	1867	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406594	48400008	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
ENSMUST00000215151.2	chr9	-	129	1	FSM	ENSMUSG00000111228.2	ENSMUST00000215151.2	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACAGCTACAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	75427784	75427655	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_75427700_75427800
ENSMUST00000215307.2	chr9	+	3776	19	FSM	ENSMUSG00000032512.8	ENSMUST00000215307.2	3776	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	68.0088955692063	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGCTGGACATGTT	NA	False	NA	30	True	AATAAA	-18	NA	119723971	119755653	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745858_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUST00000216057.2	chr9	-	627	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671599	21667399	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
ENSMUST00000216313.2	chr11	-	1304	12	FSM	ENSMUSG00000018593.14	ENSMUST00000216313.2	1304	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	267.658904683178	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3431	False	NA	NA	False	AATACA	-28	NA	55311151	55286246	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904_55311027_55311123
ENSMUST00000216344.2	chr9	+	2228	18	FSM	ENSMUSG00000003402.15	ENSMUST00000216344.2	2228	18	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	191.361611709314	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914101	21925518	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUST00000216365.2	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUST00000216825.2	chr9	+	1210	11	FSM	ENSMUSG00000031939.17	ENSMUST00000216825.2	1210	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_10	180.996160180265	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	NA	False	NA	-1	True	NA	NA	NA	15219041	15228266	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
ENSMUST00000216841.2	chr9	+	1426	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818316	57837249	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUST00000216867.2	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	1750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
ENSMUST00000216925.2	chr9	+	1319	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216925.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	82.3315856764583	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818261	57837251	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_57818291_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUST00000216990.2	chr9	+	598	4	FSM	ENSMUSG00000025794.10	ENSMUST00000216990.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	2	573	junction_1	6865.05966632645	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120401160	120403501	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_120401264_120402641_120402742_120402829_120402884_120403160
ENSMUST00000217150.2	chr9	-	951	4	FSM	ENSMUSG00000079677.3	ENSMUST00000217150.2	951	4	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	55.4276304943863	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGACATGTTTTGTG	NA	False	NA	-8	True	AATAAA	-11	NA	20984910	20978816	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559
ENSMUST00000217356.2	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	24997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUST00000217381.2	chr9	+	1789	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	368	False	NA	22	True	AATAAA	-26	NA	45281482	45307457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUST00000217382.2	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_21668691_21668980_21669126_21671414
ENSMUST00000217484.2	chr9	+	2580	11	FSM	ENSMUSG00000032279.12	ENSMUST00000217484.2	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	False	NA	35	True	AATAAA	-15	NA	54493617	54511945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000217524.2	chr9	-	1819	1	FSM	ENSMUSG00000110816.2	ENSMUST00000217524.2	1819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGATCCCAGACCCCATG	NA	False	NA	NA	False	NA	NA	NA	18211947	18210128	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_18210100_18211900
ENSMUST00000217641.2	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8743	False	NA	-9	True	AATAAA	-19	NA	31123083	31060852	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000217809.2	chr10	-	1115	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	28	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159427	95011126	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95011841_95158447_95158752_95159330
ENSMUST00000217969.2	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8242	False	NA	-7	True	AATAAA	-18	NA	128329726	128326731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
ENSMUST00000218055.2	chr10	-	2180	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUST00000218095.2	chr10	+	1622	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521388	86525818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_86521473_86521743_86521861_86524397
ENSMUST00000218107.2	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	25267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ENSMUST00000218119.2	chr10	-	609	4	FSM	ENSMUSG00000035215.10	ENSMUST00000218119.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	2094.66343093321	1812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCCCTCCCTTCCTGCT	NA	False	NA	-23	True	AATAAA	-15	NA	80691027	80688668	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690847
ENSMUST00000218127.2	chr10	-	691	7	FSM	ENSMUSG00000090841.3	ENSMUST00000218127.2	691	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	1160.32375750142	3231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8242	False	NA	-5	True	AATAAA	-20	NA	128329726	128326729	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128326903_128327588_128327634_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000218208.2	chr10	-	1964	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_11	105.465203223192	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4772	False	NA	-13	True	AATAAA	-15	NA	80896012	80879910	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
ENSMUST00000218218.2	chr10	+	1143	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584396	128602433	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
ENSMUST00000218221.2	chr10	-	460	5	FSM	ENSMUSG00000061983.8	ENSMUST00000218221.2	460	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1861.96017344625	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663115	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23663053
ENSMUST00000218267.2	chr10	-	600	2	FSM	ENSMUSG00000033307.8	ENSMUST00000218267.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTGAGCCTCGCTCCA	NA	False	NA	-107	True	NA	NA	NA	75696026	75695283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_75695378_75695520
ENSMUST00000218311.2	chr14	+	1201	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051597	55091552	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
ENSMUST00000218576.2	chr10	-	3092	28	FSM	ENSMUSG00000052798.14	ENSMUST00000218576.2	3092	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	174.862046350179	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	-4	True	AATAAA	-29	NA	117628569	117586525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610494_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ENSMUST00000218582.2	chr10	+	2795	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	48.9166587797331	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109732	52197474	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUST00000218885.2	chr10	+	2233	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5893	False	NA	7	True	AATAAA	-16	NA	78410827	78420313	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUST00000218893.2	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUST00000219019.2	chr10	-	677	6	FSM	ENSMUSG00000062981.6	ENSMUST00000219019.2	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	1931.1881316951	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95336385	95316666	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244
ENSMUST00000219069.2	chr12	+	605	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACATGGTGGTGTGTGCC	NA	False	NA	NA	False	AATAAA	-15	NA	4893327	4899343	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_4893452_4898862
ENSMUST00000219143.2	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
ENSMUST00000219215.2	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
ENSMUST00000219236.2	chr10	-	692	7	FSM	ENSMUSG00000090841.3	ENSMUST00000219236.2	692	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1170.06704461278	2692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8252	False	NA	-7	True	AATAAA	-18	NA	128329716	128326731	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128326903_128327158_128327217_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000219239.2	chr10	-	2238	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUST00000219317.2	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	3431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128736857	128748691	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000219374.2	chr10	-	1852	12	FSM	ENSMUSG00000061032.10	ENSMUST00000219374.2	1852	12	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_11	269.317686996093	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	NA	False	NA	-17	True	AATAAA	-21	NA	78248826	78236217	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78248653
ENSMUST00000219442.3	chr10	+	3531	14	FSM	ENSMUSG00000020250.12	ENSMUST00000219442.3	3531	14	0	0	0	0	multi-exon	TRUE	canonical	1	267	junction_2	143.143532881919	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	13	True	AATAAA	-14	NA	82696134	82733544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUST00000219527.2	chr10	-	3862	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628065	62580240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUST00000219591.2	chr10	-	596	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	0	0	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	7400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCGGAGTGTGTTTAT	NA	False	NA	-9	True	NA	NA	NA	128462293	128460402	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128460506_128461075_128461207_128461931
ENSMUST00000219896.2	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_80736094_80736315_80736385_80736502
ENSMUST00000219915.2	chr10	+	2733	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	0	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171931	21244782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUST00000220027.2	chr10	-	1307	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7245	False	NA	-3	True	AATAAA	-12	NA	128204560	128198968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
ENSMUST00000220046.2	chr12	+	3040	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGGTGTTGAAACATAA	8026	False	NA	8	True	AATAAA	-16	NA	76302186	76366576	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUST00000220070.2	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23662987	23661095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ENSMUST00000220107.2	chr10	+	767	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAAACTTTGTTTTCAGT	NA	False	NA	-91	True	NA	NA	NA	120063006	120067469	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
ENSMUST00000220110.2	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	67	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	False	NA	-8	True	AATAAA	-18	NA	17898966	17887011	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_17887565_17894586_17894650_17898814
ENSMUST00000220171.2	chr10	-	1795	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGCTGGTATA	NA	False	NA	-4	True	AATAAA	-27	NA	23663100	23661081	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_23662779_23662891_23662943_23663053
ENSMUST00000220287.2	chr10	+	2726	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATATACTGCCATCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	81919186	81947050	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
ENSMUST00000220419.2	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_86521602_86521743_86521861_86524397
ENSMUST00000220512.2	chr13	-	1995	3	FSM	ENSMUSG00000113260.2	ENSMUST00000220512.2	1995	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCCTTTGCGTGTCAAT	7830	False	NA	NA	False	NA	NA	NA	65840810	65837426	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_65839243_65840427_65840492_65840695
ENSMUST00000220899.2	chr12	-	1994	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	0	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	9612	False	NA	-8	True	ATTAAA	-11	NA	112793043	112783856	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_112785733_112792925
ENSMUST00000221173.2	chr13	-	1549	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642111	74628175	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
ENSMUST00000221191.2	chr12	-	511	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	787	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAGAAGAATTTAAA	NA	False	NA	-17	True	AATAAA	-12	NA	101942186	101934368	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_101934470_101935751_101935894_101941918
ENSMUST00000221296.2	chr12	-	969	6	FSM	ENSMUSG00000047534.18	ENSMUST00000221296.2	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	123.279195325083	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219373	65199546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
ENSMUST00000221372.2	chr12	+	1840	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548628	24608538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUST00000221374.2	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
ENSMUST00000221375.2	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
ENSMUST00000221411.2	chr12	-	1641	19	FSM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	100.091563019339	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274953	69248546	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_69248657_69249680_69249749_69250913_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUST00000221479.2	chr12	+	1026	4	FSM	ENSMUSG00000073079.7	ENSMUST00000221479.2	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	150.738183616494	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTCTGTGTGTC	2874	False	NA	NA	False	AATAAA	-16	NA	55127344	55138680	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033
ENSMUST00000221637.2	chr13	+	452	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_2	20.5	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62411379	62421101	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62411510_62420579_62420707_62420906
ENSMUST00000221715.2	chr12	+	2367	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_1	90.3704039902189	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4920	False	NA	14	True	AATAAA	-16	NA	110452171	110538122	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUST00000221747.2	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	9512	False	NA	NA	False	NA	NA	NA	62614646	62600829	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
ENSMUST00000221871.2	chr12	-	820	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	19049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685856	28681082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
ENSMUST00000221996.2	chr13	-	2458	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	60.1461183748008	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62821755_62823062_62823124_62823332_62823460_62832646
ENSMUST00000222087.4	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ENSMUST00000222291.2	chr12	+	615	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAGAGATTTAAGCTT	9731	False	NA	NA	False	NA	NA	NA	70984716	70994486	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
ENSMUST00000222324.2	chr13	+	886	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245583	62259791	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUST00000222399.2	chr13	+	2430	16	FSM	ENSMUSG00000057649.7	ENSMUST00000222399.2	2430	16	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	38.2023850331654	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCCCGTCCGCTTTGAT	NA	False	NA	28	True	AATAAA	-25	NA	74085929	74109013	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090812_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUST00000222435.2	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17595	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	7962	False	NA	NA	False	NA	NA	NA	74554527	74555465	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_74554500_74555500
ENSMUST00000222457.2	chr12	-	723	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTTGTAGGAGGTTA	3378	False	NA	-19	True	AATAAA	-8	NA	110855550	110841467	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUST00000222520.2	chr12	+	767	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	59	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATCAATGTCTCAGCA	NA	False	NA	5	True	ATTAAA	-19	NA	69215594	69225779	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_69215837_69218635_69218735_69225353
ENSMUST00000222606.2	chr12	+	2284	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1861	False	NA	8	True	AATAAA	-13	NA	84363903	84390494	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUST00000222695.2	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327417	88428490	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUST00000222710.2	chr12	+	521	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548609	24559747	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
ENSMUST00000222746.2	chr13	-	2206	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	2.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706443	62664608	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_62666545_62668231_62668359_62706300
ENSMUST00000222821.2	chr12	+	783	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129360	86209233	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUST00000222929.2	chr13	+	1055	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63387842	63450096	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUST00000223033.2	chr13	-	2857	30	FSM	ENSMUSG00000021585.11	ENSMUST00000223033.2	2857	30	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_7	32.8082020428457	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACTTTCTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	74918768	74842361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
ENSMUST00000223119.2	chr12	-	479	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87519039	87518560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_87518600_87519000
ENSMUST00000223194.2	chr13	+	1398	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43518981	43548679	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUST00000223450.2	chr12	-	2726	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	-3	True	AATAAA	-20	NA	54909583	54905593	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ENSMUST00000223558.2	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21102769_21103789
ENSMUST00000223737.2	chr14	+	1057	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	66534514	66535571	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_66534500_66535600
ENSMUST00000223939.2	chr14	+	2769	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540796	24545913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
ENSMUST00000223999.2	chr14	+	525	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	7137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540797	24545913	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
ENSMUST00000224069.2	chr14	+	1818	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126219	21498630	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUST00000224150.2	chr13	-	784	6	FSM	ENSMUSG00000021377.16	ENSMUST00000224150.2	784	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	757.290063317881	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTGTATTTTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	47251813	47239407	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47246593_47246690_47251630
ENSMUST00000224182.2	chr13	-	2754	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	0	0	0	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4751	False	NA	-19	True	AATAAA	-19	NA	58550330	58539048	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUST00000224220.2	chr13	+	1204	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	2806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTGGAGTCAGATAG	5553	False	NA	15	True	NA	NA	NA	55469831	55473082	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
ENSMUST00000224284.3	chr18	+	1955	20	FSM	ENSMUSG00000024474.8	ENSMUST00000224284.3	1955	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877744	36890688	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUST00000224286.2	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_2	790	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_20441529_20441960_20442222_20443245
ENSMUST00000224313.2	chr14	+	519	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063886	58064405	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_58063900_58064400
ENSMUST00000224463.2	chr13	+	658	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	29594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071335	91072842	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
ENSMUST00000224467.3	chr18	+	1910	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	0	0	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	800	False	NA	26	True	AATAAA	-15	NA	84952906	84999598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUST00000224487.2	chr13	-	533	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842986	38839787	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_38840217_38842882
ENSMUST00000224568.2	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUST00000224897.2	chr19	-	2168	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCATTGTTTTTAGTT	7439	False	NA	-7	True	AATAAA	-38	NA	55304464	55286732	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
ENSMUST00000224905.2	chr17	+	1906	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTTTTGGTTGGCAT	NA	False	NA	9	True	ATTAAA	-19	NA	45874799	45878596	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUST00000224917.2	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUST00000224947.2	chr17	+	2016	14	FSM	ENSMUSG00000019487.12	ENSMUST00000224947.2	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_12	68.855048845232	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556454	57570427	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
ENSMUST00000225035.2	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
ENSMUST00000225141.2	chr19	+	1209	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	False	NA	17	True	AATAAA	-17	NA	5510643	5515079	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUST00000225294.2	chr14	-	1191	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185505	10167783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUST00000225355.2	chr14	-	2771	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3467	False	NA	NA	False	AATAAA	-16	NA	65830501	65767897	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
ENSMUST00000225401.2	chr14	+	951	9	FSM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508547	8520749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUST00000225476.2	chr19	-	1455	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675669	4672618	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000225490.2	chr13	+	1771	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225490.2	1771	6	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_4	61.475198251002	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015926	25026135	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUST00000225542.2	chr13	-	1153	3	FSM	ENSMUSG00000114839.2	ENSMUST00000225542.2	1153	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGTCCAAAGACATAAAGG	NA	False	NA	NA	False	NA	NA	NA	66889377	66886434	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_66887397_66888983_66889042_66889244
ENSMUST00000225561.2	chr13	-	1296	5	FSM	ENSMUSG00000021485.15	ENSMUST00000225561.2	1296	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	4.41588043316392	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTAAGTTCCTGTCCAT	6090	False	NA	-8	True	ATTAAA	-7	NA	55477636	55473299	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081
ENSMUST00000225585.2	chr16	+	1705	2	FSM	ENSMUSG00000079737.5	ENSMUST00000225585.2	1705	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTACTTTGGTATCTTAA	NA	False	NA	NA	False	AATAAA	-1	NA	13489792	13496252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_13489943_13494697
ENSMUST00000225612.2	chr14	+	550	6	FSM	ENSMUSG00000021774.14	ENSMUST00000225612.2	550	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	122.433002086856	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGACCAAGAGATACGC	NA	False	NA	NA	False	NA	NA	NA	4137951	4186327	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_4138010_4138657_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000225639.2	chr14	+	1269	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	63359962	63361231	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_63360000_63361200
ENSMUST00000225674.2	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUST00000225735.2	chr14	+	2377	1	FSM	ENSMUSG00000021748.10	ENSMUST00000225735.2	2377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296810	14299187	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_14296800_14299200
ENSMUST00000225815.2	chr13	+	2447	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550513	58557906	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
ENSMUST00000225857.2	chr14	+	1962	14	FSM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	577.508113624194	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30279565	30295581	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_30279651_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUST00000225972.2	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_108181243_108182958_108183103_108183973
ENSMUST00000226072.2	chr14	+	578	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	962	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753125	20754493	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_20753266_20753343_20753477_20754188
ENSMUST00000226086.2	chr17	+	850	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874885	45876981	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
ENSMUST00000226256.2	chr14	+	1455	1	FSM	ENSMUSG00000022109.7	ENSMUST00000226256.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73747471	73748926	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_73747500_73748900
ENSMUST00000226290.2	chr14	-	1241	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30723326	30721784	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30722861_30723161
ENSMUST00000226340.2	chr14	+	935	8	FSM	ENSMUSG00000022111.10	ENSMUST00000226340.2	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	1942.45800521937	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTTGTTTTTGCTA	3059	False	NA	21	True	AATAAA	-17	NA	101903231	101933560	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101923006_101923199_101928007_101928084_101932594_101932654_101933337
ENSMUST00000226522.2	chr14	-	2804	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	128.961961446002	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTCTGCCTGTGTT	5765	False	NA	-2	True	AATAAA	-25	NA	52252039	52243533	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
ENSMUST00000226599.2	chr17	+	788	6	FSM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	84.7216619289305	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	15261895	15266171	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
ENSMUST00000226659.2	chr14	-	1730	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2342	False	NA	-23	True	AATAAA	-14	NA	55897908	55895350	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
ENSMUST00000226707.2	chr15	-	922	10	FSM	ENSMUSG00000050891.11	ENSMUST00000226707.2	922	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	44.4124885117066	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGTGTTTCCTTTTTA	NA	False	NA	-4	True	ATTAAA	-13	NA	58805587	58772825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800392_58800599_58805527
ENSMUST00000226740.2	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_10	235.33125806065	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUST00000226753.2	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	53.6977653166312	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655136	54606898	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
ENSMUST00000226782.2	chr14	-	949	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	30723566	30721782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000226827.2	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUST00000227139.2	chr14	-	867	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227139.2	867	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_3	15.0499169432924	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACACATTGGTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	56137685	56135366	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270
ENSMUST00000227173.2	chr15	+	1122	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246133	59473521	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
ENSMUST00000227242.2	chr14	-	2617	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	1892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8748	False	NA	-38	True	AATAAA	-19	NA	52341462	52311001	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000227371.2	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
ENSMUST00000227463.2	chr15	+	556	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	1199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2304	False	NA	34	True	AATAAA	-15	NA	5146182	5148157	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
ENSMUST00000227536.2	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUST00000227545.2	chr17	+	553	3	FSM	ENSMUSG00000036552.20	ENSMUST00000227545.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAGTGTTGGATGATAC	NA	False	NA	NA	False	NA	NA	NA	15270606	15272326	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_15270636_15271008_15271039_15271832
ENSMUST00000227635.2	chr15	+	925	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2297	False	NA	36	True	AATAAA	-17	NA	5146175	5148159	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_5146905_5147100_5147186_5148048
ENSMUST00000227729.2	chr17	+	656	5	FSM	ENSMUSG00000045257.11	ENSMUST00000227729.2	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTGAATTATGTATTG	NA	False	NA	15	True	AATAAA	-18	NA	80597631	80604905	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ENSMUST00000227815.2	chr14	+	1270	4	FSM	ENSMUSG00000022111.10	ENSMUST00000227815.2	1270	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2159.4787951417	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTTTAGAACCATTCT	90	False	NA	NA	False	AGTAAA	-14	NA	101891402	101905258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427
ENSMUST00000228117.2	chr14	+	1466	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228117.2	1466	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	26.4952825989835	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATTTAAAAGCTCTA	NA	False	NA	NA	False	AATAAA	-11	NA	43156328	43163461	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_43156357_43157302_43157435_43158114_43158297_43162337
ENSMUST00000228198.2	chr14	-	2498	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8754	False	NA	NA	False	GGGGCT	-20	NA	52341456	52311132	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000228226.2	chr15	-	1896	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932192	63802792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
ENSMUST00000228232.2	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
ENSMUST00000228277.2	chr14	+	4140	26	FSM	ENSMUSG00000030662.11	ENSMUST00000228277.2	4140	26	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	254.949231024532	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTGTAGAACTTCAGT	6454	False	NA	18	True	AATAAA	-20	NA	121153258	121184830	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_121153582_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUST00000228505.2	chr14	+	1591	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGCTCTAGAAAACA	NA	False	NA	NA	False	AATAAA	-18	NA	43132674	43163468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUST00000228538.3	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUST00000228580.2	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4726	False	NA	-7	True	AATAAA	-20	NA	52258158	52243538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
ENSMUST00000228672.2	chr14	+	2173	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045402	51058757	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUST00000228736.2	chr14	-	702	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723320	30721783	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000228748.2	chr14	-	1691	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	0	0	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	1330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8746	False	NA	-17	True	AATAAA	-21	NA	52341464	52311908	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000228826.2	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUST00000229019.2	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9671	False	NA	-25	True	AATAAA	-17	NA	76510206	76506308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
ENSMUST00000229085.2	chr15	-	1270	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229085.2	1270	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	151.287309447951	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800362_75800740_75800899_75801567
ENSMUST00000229183.2	chr15	+	1020	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	22763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788301	76790514	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUST00000229261.2	chr15	-	1631	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229261.2	1631	8	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_7	94.9343489588721	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGGCAGCTATACTG	9591	False	NA	-24	True	AATAAA	-18	NA	76510286	76506307	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUST00000229385.2	chr15	-	1291	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845043	81835308	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000229428.2	chr15	+	1455	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7680	False	NA	10	True	AATAAA	-16	NA	97862109	97868155	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUST00000229618.2	chr15	+	1576	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2123	False	NA	5	True	ATTAAA	-5	NA	102379087	102407316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229641.2	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8840	False	NA	-22	True	AATAAA	-22	NA	75801681	75796524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ENSMUST00000229854.2	chr15	+	1499	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	165.819713890698	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2254	False	NA	5	True	ATTAAA	-5	NA	102379218	102407316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229951.2	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8946	False	NA	-22	True	AATAAA	-22	NA	75801575	75796524	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000229961.2	chr16	+	1162	4	FSM	ENSMUSG00000022516.11	ENSMUST00000229961.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_3	242.27670131484	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCATGGCCACATCTTT	95	False	NA	25	True	AATAAA	-31	NA	4756975	4758896	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757503_4758059_4758180_4758297
ENSMUST00000229999.2	chr15	-	510	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCCGCTTTCCTCCCG	NA	False	NA	NA	False	NA	NA	NA	97065124	97059069	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ENSMUST00000230086.2	chr15	-	1963	16	FSM	ENSMUSG00000022464.15	ENSMUST00000230086.2	1963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	409.635849125646	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	-12	True	ATTAAA	-23	NA	96929092	96894648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96929014
ENSMUST00000230105.2	chr15	+	1981	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2243	False	NA	NA	False	NA	NA	NA	82031451	82058095	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
ENSMUST00000230171.2	chr15	+	1283	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148858	103155119	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ENSMUST00000230229.2	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000230274.2	chr15	+	1111	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_1	105.909814884594	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832721	76834929	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000230380.2	chr15	-	1020	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATTCTTTTCCTACTT	1388	False	NA	NA	False	NA	NA	NA	82222983	82218817	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ENSMUST00000230494.2	chr15	-	382	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGCACTGGTGAACC	6280	False	NA	-37	True	AATAAA	-26	NA	82238455	82234364	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_82234573_82238281
ENSMUST00000230495.2	chr16	-	1147	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	False	NA	-8	True	NA	NA	NA	14135208	14117111	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_14118074_14122317_14122452_14135157
ENSMUST00000230729.2	chr15	+	1062	7	FSM	ENSMUSG00000022471.15	ENSMUST00000230729.2	1062	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	249.016342614072	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGTGCACTTTTCAGTA	63	False	NA	28	True	AATAAA	-14	NA	81912332	81924285	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_81912356_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUST00000231024.2	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_97059277_97064383_97064508_97065057
ENSMUST00000231039.2	chr15	-	3923	15	FSM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	96.7698721879145	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGATCTTCTTTCGT	NA	False	NA	-9	True	AATAAA	-19	NA	96917832	96892700	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604
ENSMUST00000231074.2	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUST00000231152.2	chr15	-	1271	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543956	76542332	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr15_-_76543066_76543418
ENSMUST00000231322.2	chr16	+	1503	6	FSM	ENSMUSG00000055692.22	ENSMUST00000231322.2	1503	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	34.92506263416	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094540	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUST00000231351.2	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	448.847621693599	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	-5	True	AATACA	-14	NA	35891739	35864215	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
ENSMUST00000231355.2	chr17	+	2194	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGTATGAATGTAATTAATG	6224	False	NA	NA	False	NA	NA	NA	17455133	17486325	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
ENSMUST00000231380.2	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443813	91430292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUST00000231414.2	chr16	-	806	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
ENSMUST00000231471.2	chr16	-	1215	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231471.2	1215	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.403247114701	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20427736_20427837_20429292
ENSMUST00000231548.2	chr16	-	1110	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7275	False	NA	1	True	AATAAA	-19	NA	17348911	17345941	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
ENSMUST00000231579.2	chr16	+	1703	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_3	35.6118531058502	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUST00000231621.2	chr16	+	1485	8	FSM	ENSMUSG00000000884.18	ENSMUST00000231621.2	1485	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	85.0267664938998	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCCTCAAGGTGGGAAC	NA	False	NA	15	True	AATAAA	-17	NA	18317462	18383290	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUST00000231681.2	chr16	-	1156	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
ENSMUST00000231766.2	chr16	-	2118	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231766.2	2118	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	59.9637750728526	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	21814190	21774142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792892_21794982_21795085_21800085_21800195_21802650_21803019_21814070
ENSMUST00000231768.2	chr16	+	1572	8	FSM	ENSMUSG00000022871.14	ENSMUST00000231768.2	1572	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	190.973018716129	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737083	22758528	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_22737345_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000231913.2	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
ENSMUST00000232092.2	chr16	+	1627	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	39.2189042297154	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUST00000232167.2	chr16	+	781	7	FSM	ENSMUSG00000055692.22	ENSMUST00000232167.2	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	82.8231046669145	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094833	17101093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17100678
ENSMUST00000232260.2	chr4	+	896	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035933	132038335	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
ENSMUST00000232265.2	chr17	+	1681	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	0	0	0	0	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	4565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAAGGAGCATTCA	NA	False	NA	NA	False	AATAAA	-27	NA	27775547	27782648	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUST00000232328.2	chr17	+	1598	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATACTGGAGAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	17171813	17193939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ENSMUST00000232344.2	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_2	5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964839	16966710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_16965011_16965096_16965257_16965461
ENSMUST00000232387.2	chr16	+	546	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832636	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
ENSMUST00000232396.2	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
ENSMUST00000232413.2	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_-_57382126_57427028
ENSMUST00000232581.2	chr16	+	2950	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_1	102.489023802552	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688620	16710849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUST00000232687.2	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
ENSMUST00000232766.2	chr17	-	883	4	FSM	ENSMUSG00000024048.16	ENSMUST00000232766.2	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1388.00920586124	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	6427	False	NA	-12	True	ATTAAA	-21	NA	71305049	71301281	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71305025
ENSMUST00000232770.2	chr17	+	1202	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	2192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547589	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
ENSMUST00000233006.2	chr17	+	1125	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1609	False	NA	NA	False	NA	NA	NA	29275833	29278719	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29275960_29276834_29276933_29277818
ENSMUST00000233136.2	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978386	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUST00000233174.2	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUST00000233187.2	chr17	-	512	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
ENSMUST00000233319.2	chr17	+	2567	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980364	57018764	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUST00000233427.2	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	11917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547541	28550006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000233430.2	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991911	46994028	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUST00000233474.2	chr17	-	2004	19	FSM	ENSMUSG00000073460.6	ENSMUST00000233474.2	2004	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	33.1558701951112	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2974	False	NA	-8	True	GATAAA	-20	NA	13128833	13107615	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113499_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUST00000233519.2	chr17	-	414	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	False	NA	-36	True	AATAAA	-18	NA	24048088	24043782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
ENSMUST00000233549.2	chr17	+	2749	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9250	False	NA	12	True	NA	NA	NA	57071783	57077093	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUST00000233581.2	chr17	-	734	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGTATATGACAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	74623458	74606468	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
ENSMUST00000233593.2	chr17	-	578	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	2402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATTTCTCATTTTTAT	NA	False	NA	-5	True	AGTAAA	-16	NA	24048072	24043713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
ENSMUST00000233832.2	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	False	NA	22	True	AATAAA	-22	NA	57024782	57029141	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
ENSMUST00000233845.2	chr17	+	434	1	FSM	ENSMUSG00000002660.9	ENSMUST00000233845.2	434	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57297391	57297825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_57297400_57297800
ENSMUST00000233916.2	chr17	+	1473	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUST00000233974.2	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956948	46941549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ENSMUST00000233988.2	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1000	False	NA	NA	False	AATAAA	-15	NA	47016037	46993916	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ENSMUST00000234017.2	chr17	-	1443	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043468	34042025	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34042000_34043500
ENSMUST00000234028.2	chr17	+	1270	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	484	False	NA	14	True	AATAAA	-15	NA	29487934	29520498	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUST00000234046.2	chr5	-	947	2	FSM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTCTTGTGGGTGAT	9593	False	NA	2	True	NA	NA	NA	114961529	114959995	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_-_114960787_114961373
ENSMUST00000234107.2	chr18	+	2422	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134397	21160592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUST00000234186.2	chr18	+	2110	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234186.2	2110	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	58.8005102018681	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-12	True	NA	18	True	AATAAA	-20	NA	4375591	4396785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUST00000234207.2	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-11	True	NA	2	True	NA	NA	NA	10617795	10627955	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
ENSMUST00000234295.2	chr17	+	3079	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	95172345	95185749	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUST00000234304.2	chr17	+	1137	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4840	False	NA	11	True	TATAAA	-24	NA	24645614	24658294	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000234308.2	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	10	True	AATAAA	-22	NA	24851653	24857810	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000234342.2	chr17	+	2106	1	FSM	ENSMUSG00000034681.18	ENSMUST00000234342.2	2106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	803	False	NA	NA	False	NA	NA	NA	24633538	24635644	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24633500_24635600
ENSMUST00000234352.2	chr17	-	1224	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105323	25101590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
ENSMUST00000234503.2	chr17	-	1991	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	80514736	80508258	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
ENSMUST00000234520.2	chr17	-	1177	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915086	24912163	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
ENSMUST00000234524.2	chr18	-	2603	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAATTATTTGTGA	NA	False	NA	-45	True	TTTAAA	-19	NA	14815823	14758711	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000234536.2	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUST00000234554.2	chr17	-	2828	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	1920	False	NA	2	True	NA	NA	NA	26463196	26431664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUST00000234579.2	chr17	-	1445	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	253.310580118557	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGTGTCTGTCTTGTT	NA	False	NA	-5	True	AGTAAA	-25	NA	25105313	25101584	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
ENSMUST00000234633.2	chr18	+	515	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAATGATGTAAATG	NA	False	NA	NA	False	NA	NA	NA	47245205	47245720	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_47245200_47245700
ENSMUST00000234687.2	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1928	False	NA	-17	True	AATAAA	-31	NA	26463188	26431683	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ENSMUST00000234889.2	chr17	-	1898	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514733	80508738	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUST00000234961.2	chr18	+	792	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091927	47168874	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
ENSMUST00000234968.2	chr17	-	1502	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105307	25101590	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUST00000234977.2	chr17	+	1769	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	889	False	NA	NA	False	AATAAA	-24	NA	24633624	24644875	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000235036.2	chr17	-	1921	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514734	80508740	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUST00000235050.2	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	476	False	NA	19	True	AATAAA	-20	NA	29487926	29520503	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235114.2	chr17	+	1073	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	468	False	NA	12	True	AATAAA	-13	NA	29487918	29520496	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235135.2	chr18	+	2633	15	FSM	ENSMUSG00000025423.17	ENSMUST00000235135.2	2633	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	468.401450005598	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATCTTTGTACTGTGC	7936	False	NA	-82	True	NA	NA	NA	77152940	77241032	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77210692_77210767_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUST00000235160.2	chr19	+	3301	11	FSM	ENSMUSG00000010663.6	ENSMUST00000235160.2	3301	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	244.492126662598	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTATTCATTTGAAAT	NA	False	NA	21	True	AATAAA	-22	NA	10160302	10174241	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10160629_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUST00000235271.2	chr19	+	2661	8	FSM	ENSMUSG00000034445.9	ENSMUST00000235271.2	2661	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	32.1856857523176	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554814	10567193	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_10555258_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUST00000235274.2	chr19	+	3788	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1899	False	NA	-56	True	GATAAA	-42	NA	8875470	8894036	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUST00000235293.2	chr19	-	1598	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9793	False	NA	NA	False	NA	NA	NA	60215109	60187346	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
ENSMUST00000235307.2	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14690	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-30	NA	48179713	48181460	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_48179700_48181500
ENSMUST00000235327.2	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
ENSMUST00000235400.2	chr18	+	1522	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4672	False	NA	19	True	AATAAA	-13	NA	35731701	35750236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ENSMUST00000235442.2	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
ENSMUST00000235455.2	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
ENSMUST00000235476.2	chr18	+	1569	7	FSM	ENSMUSG00000037058.17	ENSMUST00000235476.2	1569	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1378.81757918394	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCTTGTGTTATTGGT	5607	False	NA	23	True	AATAAA	-17	NA	35732636	35750240	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35732672_35732765_35732812_35733097_35733171_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ENSMUST00000235484.2	chr17	-	1498	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUST00000235590.2	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000235606.2	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084307	42008664	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUST00000235619.2	chr18	-	1524	9	FSM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	48.2841524208513	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631947	35399448	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319_35571434_35631843
ENSMUST00000235620.2	chr19	+	2441	13	FSM	ENSMUSG00000015176.12	ENSMUST00000235620.2	2441	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTGTGATTTTCAG	4	False	NA	14	True	ATTAAA	-14	NA	46064427	46072900	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000235701.2	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3629	False	NA	-6	True	AATAAA	-15	NA	5660076	5653044	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ENSMUST00000235799.2	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774670	67787232	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUST00000235830.2	chr19	-	1992	6	FSM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	113.82794033101	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTAACAAAGGGGCGG	NA	False	NA	-2	True	AATAAA	-23	NA	53377853	53367820	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53374803_53374988_53377733
ENSMUST00000235847.2	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
ENSMUST00000235853.2	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
ENSMUST00000235859.2	chr19	-	2179	18	FSM	ENSMUSG00000041360.9	ENSMUST00000235859.2	2179	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	491.227662003022	742	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	False	NA	67	True	NA	NA	NA	27407220	27367376	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397518_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUST00000235900.2	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	128.02514401476	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078774	29121329	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
ENSMUST00000235964.2	chr19	-	833	7	FSM	ENSMUSG00000071662.5	ENSMUST00000235964.2	833	7	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	75.5005518743627	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTCATGGAAATGTTG	NA	False	NA	-12	True	CATAAA	-12	NA	8775817	8770548	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587
ENSMUST00000235966.2	chr18	+	755	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235966.2	755	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10470.3724556484	37610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60880220	60911617	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_60880294_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000235977.2	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUST00000236020.2	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4664	False	NA	-19	True	NA	NA	NA	35731693	35749572	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
ENSMUST00000236044.2	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUST00000236046.2	chr19	-	1167	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	358.309542707226	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5874	False	NA	-6	True	AGTAAA	-15	NA	46327047	46318982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46327007
ENSMUST00000236061.2	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ENSMUST00000236085.2	chr18	+	1796	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9067	False	NA	44	True	AATAAA	-29	NA	38551959	38598250	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUST00000236112.2	chr17	-	1176	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314447	26310713	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26311127_26312590_26313245_26314338
ENSMUST00000236152.2	chr19	+	2619	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4058	False	NA	21	True	ATTAAA	-22	NA	5073887	5082000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUST00000236178.2	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
ENSMUST00000236181.2	chr19	+	1318	7	FSM	ENSMUSG00000040385.8	ENSMUST00000236181.2	1318	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1475.23350317463	2673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATAGCCTCTGTCTCTCT	3645	False	NA	30	True	AATAAA	-19	NA	4242431	4245418	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_4242485_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUST00000236217.2	chr19	+	503	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	14281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1107	False	NA	4	True	AATAAA	-16	NA	6107998	6109549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000236232.2	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUST00000236322.2	chr17	+	1108	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACTAGACAAGTGTCTA	6798	False	NA	28	True	AATAAA	-36	NA	34354601	34358074	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
ENSMUST00000236326.2	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
ENSMUST00000236361.2	chr17	-	1320	7	FSM	ENSMUSG00000039615.10	ENSMUST00000236361.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	576.693568736658	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6759	False	NA	-19	True	AATAAA	-15	NA	26051921	26049609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051281_26051665
ENSMUST00000236451.2	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
ENSMUST00000236503.2	chr17	-	1987	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569569	32540398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUST00000236515.2	chr17	-	1701	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236515.2	1701	6	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	90.6986218197388	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6765	False	NA	-17	True	AATAAA	-17	NA	26051915	26049607	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019
ENSMUST00000236547.2	chr17	-	926	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUST00000236565.2	chr17	-	1408	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUST00000236683.2	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8378	False	NA	-7	True	AATAAA	-17	NA	26011361	26009479	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
ENSMUST00000236740.2	chr17	-	1567	7	FSM	ENSMUSG00000061232.17	ENSMUST00000236740.2	1567	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.8920794248234	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	NA	False	NA	-11	True	AATAAA	-25	NA	34219279	34214997	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_34215478_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000236744.2	chr17	-	740	4	FSM	ENSMUSG00000024194.17	ENSMUST00000236744.2	740	4	0	0	0	0	multi-exon	FALSE	canonical	3	797	junction_2	77.9016473937918	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9663	False	NA	-17	True	AATAAA	-18	NA	27158132	27156945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157592_27157700_27157761_27157857
ENSMUST00000236801.2	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
ENSMUST00000236873.2	chr18	-	2482	14	FSM	ENSMUSG00000024587.11	ENSMUST00000236873.2	2482	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1471.99684444606	2400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64649550	64632725	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUST00000236888.2	chr17	-	719	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9387	False	NA	-18	True	AATAAA	-17	NA	27158408	27156946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
ENSMUST00000236910.2	chr17	-	1375	6	FSM	ENSMUSG00000062202.15	ENSMUST00000236910.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	4.24264068711928	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAAACCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	30795233	30732449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ENSMUST00000236960.2	chr19	-	2148	9	FSM	ENSMUSG00000025220.9	ENSMUST00000236960.2	2148	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	256.490953787848	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGTGGTTGCATTTC	NA	False	NA	0	True	AATAAA	-23	NA	45760325	45740268	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45753888_45754064_45755832_45756447_45758489_45758649_45760120
ENSMUST00000236976.2	chr19	+	744	4	FSM	ENSMUSG00000038274.14	ENSMUST00000236976.2	744	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	3637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000236978.2	chr19	-	2731	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_12	26.041358331508	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCAAGAGTAAATTAAA	9889	False	NA	65	True	NA	NA	NA	5821447	5808378	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUST00000236980.2	chr19	-	999	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUST00000237158.2	chr17	-	1613	7	FSM	ENSMUSG00000019214.15	ENSMUST00000237158.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_6	169.684756730434	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5737	False	NA	NA	False	NA	NA	NA	25946330	25943754	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUST00000237167.2	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416461
ENSMUST00000237219.2	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUST00000237323.2	chr17	-	975	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTGACTTCTTGTAA	NA	False	NA	-18	True	AATAAA	-18	NA	31877729	31866055	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
ENSMUST00000237341.2	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ENSMUST00000237347.2	chr19	+	1940	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTCAATTCATACAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	18609313	18629792	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ENSMUST00000237359.2	chr17	-	2044	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	11.5648646230728	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	6591	False	NA	-4	True	AATAAA	-20	NA	25973352	25967588	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUST00000237369.2	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	1774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237400.2	chr18	-	2745	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	4889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649723	64632717	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237411.2	chr17	-	1958	6	FSM	ENSMUSG00000057789.15	ENSMUST00000237411.2	1958	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	53.687987483235	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	-2	True	AATAAA	-18	NA	27247561	27238785	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241847_27244766_27244868_27247384
ENSMUST00000237467.2	chr19	-	2101	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGGAAAGACAC	6027	False	NA	-24	True	NA	NA	NA	4251606	4245218	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUST00000237478.2	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46731224_46731707_46731768_46740570
ENSMUST00000237487.2	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000237585.2	chr18	-	2268	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	-15	True	AATAAA	-21	NA	64649508	64633288	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237609.2	chr17	-	785	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9398	False	NA	-18	True	AATAAA	-17	NA	27158397	27156946	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
ENSMUST00000237634.2	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
ENSMUST00000237700.2	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
ENSMUST00000237720.2	chr19	-	425	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTATGAACCTGGAA	NA	False	NA	-22	True	NA	NA	NA	47079073	47071924	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
ENSMUST00000237742.2	chr19	-	2683	10	FSM	ENSMUSG00000025228.6	ENSMUST00000237742.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	95.5045083287229	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCAGTCTGACCTCTTTC	NA	False	NA	-5	True	AATAAA	-16	NA	46384177	46365252	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_46366909_46367046_46367088_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUST00000237893.2	chr19	-	806	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237893.2	806	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1359.76024234667	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4087977	4085410	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087865
ENSMUST00000238036.2	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	5946	False	NA	3	True	ATTAAA	-16	NA	8848956	8853227	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000238168.2	chr18	+	2012	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	1440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
ENSMUST00000238230.2	chr2	+	2159	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153350	150168932	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
ENSMUST00000238277.2	chr2	+	572	5	FSM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	409.357041590834	4262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905140	166907782	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907232_166907401_166907606
ENSMUST00000238492.2	chr8	+	2044	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889651	72906984	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUST00000238623.2	chr13	+	1525	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATCATAAAAGAACCCAT	NA	False	NA	NA	False	NA	NA	NA	66261293	66270282	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
ENSMUST00000238953.2	chr10	-	3204	8	FSM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178182	40163453	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUST00000239015.2	chr7	-	1855	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTTCTTGGTTCATTC	NA	False	NA	27	True	NA	NA	NA	44145937	44139361	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000239075.2	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	172	False	NA	12	True	AATAAA	-12	NA	26476641	26482693	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUST00000239083.2	chr9	+	3558	20	FSM	ENSMUSG00000025240.11	ENSMUST00000026270.9	3558	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTTGGTACTGTTTCT	NA	False	NA	19	True	AATAAA	-20	NA	123358823	123421665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
ENSMUST00000239099.2	chr14	-	880	5	FSM	ENSMUSG00000021951.8	ENSMUST00000239099.2	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809069	57787053	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000239124.2	chr6	-	1008	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9874	False	NA	NA	False	NA	NA	NA	85892659	85887138	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_85888003_85892515
ENSMUST00000239253.2	chr9	-	1781	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239253.2	1781	2	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404992	88403109	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88404435_88404536
ENSMUST00000239281.2	chr11	+	857	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562513	116566625	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
ENSMUST00000239288.2	chr2	-	1233	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTATCTGGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	130126381	130121236	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUST00000239344.2	chr9	-	1437	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404943	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970
ENSMUST00000239365.2	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ENSMUST00000239397.2	chr6	-	1287	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUST00000239401.2	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	8006	False	NA	10	True	AATAAA	-12	NA	79505243	79511960	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr10_+_79505618_79511233
ENSMUST00000239402.2	chr12	+	2125	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	3696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316595	17334771	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUST00000239403.2	chr14	+	2406	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496688	54506626	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ENSMUST00000239430.2	chr17	-	1442	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	496	4	496	-4	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTGATGTGTGAGTAG	NA	False	NA	-5	True	AATAAA	-23	NA	41245442	41233945	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ENSMUST00000239432.2	chr6	-	1601	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	3462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	False	NA	-23	True	AATACA	-16	NA	124791259	124787554	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUST00000239436.2	chr8	+	1897	6	FSM	ENSMUSG00000031532.8	ENSMUST00000239436.2	1897	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGTGTTTCGTGTGTGGT	NA	False	NA	33	True	AATAAA	-40	NA	34621716	34637999	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ENSMUST00000239441.2	chrX	-	2648	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042420	8020710	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUST00000239462.2	chr9	-	3112	28	FSM	ENSMUSG00000032422.19	ENSMUST00000239462.2	3112	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATTTACTGTCTTGA	NA	False	NA	1	True	AATAAA	-43	NA	88321004	88258799	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ENSMUST00000239472.2	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	563	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr9_+_56344700_56345700
ENSMUST00000239473.2	chr5	+	1813	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000239499.2	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
ENSMUST00000239523.1	chrX	+	868	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	3997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9192	False	NA	20	True	ATTAAA	-17	NA	36892322	36897311	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUST00000239687.1	chr11	+	215	1	FSM	ENSMUSG00000119648.1	ENSMUST00000239687.1	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATTTTTTATTGTTTTT	7809	False	NA	NA	False	NA	NA	NA	87339452	87339667	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_87339500_87339700
ENSMUST00000240535.1	chr11	+	191	1	FSM	ENSMUSG00000119776.1	ENSMUST00000240535.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGAGTAAAGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101518191	101518382	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_chr11_+_101518200_101518400
SIRV101	SIRV1	-	1561	6	FSM	SIRV1A	SIRV101	1561	6	0	0	0	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	3170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
SIRV102	SIRV1	-	1300	4	FSM	SIRV1A	SIRV102	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10366	1006	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
SIRV103	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	2584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
SIRV105	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
SIRV106	SIRV1	-	973	3	FSM	SIRV1A	SIRV106	973	3	0	0	0	0	multi-exon	FALSE	canonical	2	497	junction_2	204	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_1485_7552_7809_10553
SIRV107	SIRV1	-	744	3	FSM	SIRV1A	SIRV107	744	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGGCGCAAGGTACAT	NA	False	NA	NA	False	GATAAA	-18	NA	11643	10647	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_-_10792_10882_11243_11403
SIRV108	SIRV1	+	702	3	FSM	SIRV1B	SIRV108	702	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10582	11606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_+_10792_10897_11188_11403
SIRV109	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV1_+_10792_10882_11058_11434
SIRV201	SIRV2	-	2051	11	FSM	SIRV2A	SIRV201	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	1777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCCAACGTGGCATGCG	NA	False	NA	NA	False	NA	NA	NA	5907	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV202	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV203	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
SIRV204	SIRV2	-	740	3	FSM	SIRV2A	SIRV204	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_1	198	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCCTATATCGGA	NA	False	NA	NA	False	NA	NA	NA	4732	3643	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_-_3826_3966_4480_4687
SIRV205	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_+_1100_1600
SIRV206	SIRV2	+	424	1	FSM	SIRV2C	SIRV206	424	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	669	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACACACTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	4033	4457	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV2_+_4000_4500
SIRV301	SIRV3	+	2467	5	FSM	SIRV3A	SIRV301	2467	5	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1944	8939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
SIRV302	SIRV3	+	1807	2	FSM	SIRV3A	SIRV302	1807	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_2006_6057
SIRV304	SIRV3	+	1083	8	FSM	SIRV3A	SIRV304	1083	8	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1963	8937	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
SIRV305	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_4081_4568_4780_6570
SIRV306	SIRV3	+	2373	3	FSM	SIRV3A	SIRV306	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1944	8292	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_6057
SIRV307	SIRV3	+	779	5	FSM	SIRV3A	SIRV307	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1963	8939	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
SIRV308	SIRV3	-	479	3	FSM	SIRV3B	SIRV308	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	5391	junction_1	17	641	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	1982	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_-_1168_1532_1765_1902
SIRV309	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_-_8976_9189_9299_9434
SIRV310	SIRV3	-	589	3	FSM	SIRV3C	SIRV310	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	66	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGGTTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	9914	8759	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV3_-_8967_9189_9325_9667
SIRV403	SIRV4	-	670	4	FSM	SIRV4A	SIRV403	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	2485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15122	8322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
SIRV404	SIRV4	-	592	4	FSM	SIRV4A	SIRV404	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	14623	8322	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
SIRV405	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_-_8991_13672
SIRV408	SIRV4	-	570	5	FSM	SIRV4A	SIRV408	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	15122	8323	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
SIRV409	SIRV4	+	1567	3	FSM	SIRV4C	SIRV409	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1000	3403	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_+_1347_1678_1886_2389
SIRV410	SIRV4	+	950	2	FSM	SIRV4C	SIRV410	950	2	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1455	2771	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV4_+_1886_2251
SIRV501	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV502	SIRV5	+	1984	18	FSM	SIRV5A	SIRV502	1984	18	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1019	10989	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV503	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_8586_10858_10992_11133
SIRV504	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_11100_13600
SIRV505	SIRV5	+	2029	16	FSM	SIRV5A	SIRV505	2029	16	0	0	0	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV506	SIRV5	+	552	2	FSM	SIRV5A	SIRV506	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987
SIRV507	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
SIRV508	SIRV5	+	2085	17	FSM	SIRV5A	SIRV508	2085	17	0	0	0	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV509	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
SIRV510	SIRV5	+	2474	18	FSM	SIRV5A	SIRV510	2474	18	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	1484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1028	11867	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
SIRV601	SIRV6	+	1435	9	FSM	SIRV6A	SIRV601	1435	9	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	1742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	1000	11826	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV602	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
SIRV603	SIRV6	+	1969	1	FSM	SIRV6A	SIRV603	1969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	662	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8999	10968	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_9000_11000
SIRV604	SIRV6	+	1537	10	FSM	SIRV6A	SIRV604	1537	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	9140.21704229429	2670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTAGTTCAATCTT	NA	False	NA	NA	False	NA	NA	NA	1087	11837	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
SIRV605	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
SIRV606	SIRV6	+	545	4	FSM	SIRV6A	SIRV606	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	3352.72986617705	1021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724
SIRV607	SIRV6	+	574	4	FSM	SIRV6A	SIRV607	574	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1130	2540	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
SIRV608	SIRV6	+	377	4	FSM	SIRV6A	SIRV608	377	4	0	0	0	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3023	11270	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
SIRV609	SIRV6	+	485	4	FSM	SIRV6A	SIRV609	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1137	2120	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
SIRV610	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
SIRV611	SIRV6	+	454	3	FSM	SIRV6A	SIRV611	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1303	1950	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1382_1468_1535_1640
SIRV612	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	2792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV613	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
SIRV614	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
SIRV615	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_10819_11031_11109_11205
SIRV616	SIRV6	+	531	4	FSM	SIRV6A	SIRV616	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
SIRV617	SIRV6	-	276	1	FSM	SIRV6B	SIRV617	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTACTTGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	1820	1544	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV6_-_1500_1800
SIRV701	SIRV7	-	2462	5	FSM	SIRV7A	SIRV701	2462	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	1584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGTTAATATGAATC	NA	False	NA	NA	False	TATAAA	-19	NA	147923	1003	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
SIRV702	SIRV7	-	2247	6	FSM	SIRV7A	SIRV702	2247	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
SIRV703	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
SIRV704	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_56098_78841_78964_114680
SIRV706	SIRV7	-	949	5	FSM	SIRV7A	SIRV706	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
SIRV708	SIRV7	-	889	6	FSM	SIRV7A	SIRV708	889	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCTAAGAGATCGAC	NA	False	NA	NA	False	NA	NA	NA	147957	56037	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
SIRV7A_56032_147957_1	SIRV7	-	915	5	NIC	SIRV7A	novel	889	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	1736.72714825905	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_captrap_pacbio	iso_detect_ref_ritchie_captrap_pacbio	NIC_SIRV7_-_56098_70883_70988_78841_78964_114686_114961_147608
